Multiple sequence alignment - TraesCS3D01G148400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G148400 chr3D 100.000 8911 0 0 1 8911 113521558 113512648 0.000000e+00 16456.0
1 TraesCS3D01G148400 chr3D 90.958 2787 232 11 4306 7087 126964606 126961835 0.000000e+00 3733.0
2 TraesCS3D01G148400 chr3D 88.411 1812 190 11 5281 7090 281345325 281347118 0.000000e+00 2165.0
3 TraesCS3D01G148400 chr3D 94.732 1120 54 5 4293 5409 347589573 347588456 0.000000e+00 1736.0
4 TraesCS3D01G148400 chr3D 92.727 55 4 0 32 86 451377117 451377063 7.420000e-11 80.5
5 TraesCS3D01G148400 chr3D 80.952 84 11 3 38 116 943612 943529 2.690000e-05 62.1
6 TraesCS3D01G148400 chr3A 89.980 3064 192 52 1298 4294 108883794 108880779 0.000000e+00 3851.0
7 TraesCS3D01G148400 chr3A 90.045 894 72 10 7090 7980 108880772 108879893 0.000000e+00 1142.0
8 TraesCS3D01G148400 chr3A 88.540 541 36 11 724 1252 108884334 108883808 4.540000e-177 632.0
9 TraesCS3D01G148400 chr3A 90.446 157 13 2 8083 8238 108879895 108879740 1.170000e-48 206.0
10 TraesCS3D01G148400 chr3A 92.500 120 9 0 7973 8092 585500957 585501076 1.190000e-38 172.0
11 TraesCS3D01G148400 chr3A 88.889 81 8 1 8250 8330 108879656 108879577 2.050000e-16 99.0
12 TraesCS3D01G148400 chr3B 90.048 2914 172 37 1425 4291 167662777 167665619 0.000000e+00 3666.0
13 TraesCS3D01G148400 chr3B 87.607 2808 328 13 4290 7090 745194176 745196970 0.000000e+00 3240.0
14 TraesCS3D01G148400 chr3B 87.553 2804 324 16 4292 7090 181310754 181313537 0.000000e+00 3221.0
15 TraesCS3D01G148400 chr3B 97.422 892 18 3 7091 7980 167665630 167666518 0.000000e+00 1515.0
16 TraesCS3D01G148400 chr3B 93.429 624 25 9 753 1366 167662030 167662647 0.000000e+00 911.0
17 TraesCS3D01G148400 chr3B 89.338 619 42 11 8295 8911 167666809 167667405 0.000000e+00 756.0
18 TraesCS3D01G148400 chr3B 86.806 432 45 4 1 432 167643117 167643536 1.050000e-128 472.0
19 TraesCS3D01G148400 chr3B 98.585 212 3 0 8083 8294 167666516 167666727 8.450000e-100 375.0
20 TraesCS3D01G148400 chr3B 86.861 274 23 7 431 704 167643617 167643877 2.430000e-75 294.0
21 TraesCS3D01G148400 chr7B 89.262 2803 281 11 4292 7090 244412253 244415039 0.000000e+00 3491.0
22 TraesCS3D01G148400 chr7B 91.129 124 11 0 7969 8092 483809313 483809190 1.540000e-37 169.0
23 TraesCS3D01G148400 chr1A 89.314 2798 269 7 4293 7087 242786627 242789397 0.000000e+00 3483.0
24 TraesCS3D01G148400 chr7D 89.107 2653 269 7 4290 6939 383217111 383219746 0.000000e+00 3280.0
25 TraesCS3D01G148400 chr7D 85.406 1624 217 12 5196 6816 173941162 173942768 0.000000e+00 1668.0
26 TraesCS3D01G148400 chr5B 86.894 2373 295 7 4720 7090 137972959 137975317 0.000000e+00 2645.0
27 TraesCS3D01G148400 chr5B 92.500 120 9 0 7971 8090 70910802 70910683 1.190000e-38 172.0
28 TraesCS3D01G148400 chr5B 88.525 61 2 3 49 104 392070694 392070754 1.610000e-07 69.4
29 TraesCS3D01G148400 chr5B 88.525 61 2 3 49 104 392077992 392078052 1.610000e-07 69.4
30 TraesCS3D01G148400 chr2D 89.966 2043 189 5 4306 6344 239715872 239717902 0.000000e+00 2623.0
31 TraesCS3D01G148400 chr2D 93.162 117 8 0 7979 8095 154110781 154110665 1.190000e-38 172.0
32 TraesCS3D01G148400 chr6B 87.610 1703 195 6 4291 5990 195284786 195286475 0.000000e+00 1962.0
33 TraesCS3D01G148400 chr2B 88.356 1606 162 11 4291 5892 250259302 250260886 0.000000e+00 1906.0
34 TraesCS3D01G148400 chr4D 88.506 174 18 2 3380 3551 301804826 301804999 9.070000e-50 209.0
35 TraesCS3D01G148400 chr1B 86.022 186 23 3 3311 3493 14940139 14940324 7.060000e-46 196.0
36 TraesCS3D01G148400 chr1B 84.507 71 6 3 39 104 422723686 422723756 2.080000e-06 65.8
37 TraesCS3D01G148400 chr4A 94.690 113 6 0 7979 8091 548344180 548344068 9.190000e-40 176.0
38 TraesCS3D01G148400 chr6A 93.162 117 8 0 7979 8095 158088023 158087907 1.190000e-38 172.0
39 TraesCS3D01G148400 chr6A 91.870 123 10 0 7979 8101 436115577 436115455 1.190000e-38 172.0
40 TraesCS3D01G148400 chr6A 92.562 121 6 3 7967 8086 106923563 106923445 4.280000e-38 171.0
41 TraesCS3D01G148400 chr4B 91.736 121 10 0 7971 8091 607431823 607431943 1.540000e-37 169.0
42 TraesCS3D01G148400 chr4B 85.333 75 6 3 38 107 64374680 64374754 1.240000e-08 73.1
43 TraesCS3D01G148400 chr7A 82.609 92 8 4 46 132 688947916 688947828 3.450000e-09 75.0
44 TraesCS3D01G148400 chr7A 84.416 77 7 3 39 110 293179971 293179895 4.460000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G148400 chr3D 113512648 113521558 8910 True 16456.0 16456 100.0000 1 8911 1 chr3D.!!$R2 8910
1 TraesCS3D01G148400 chr3D 126961835 126964606 2771 True 3733.0 3733 90.9580 4306 7087 1 chr3D.!!$R3 2781
2 TraesCS3D01G148400 chr3D 281345325 281347118 1793 False 2165.0 2165 88.4110 5281 7090 1 chr3D.!!$F1 1809
3 TraesCS3D01G148400 chr3D 347588456 347589573 1117 True 1736.0 1736 94.7320 4293 5409 1 chr3D.!!$R4 1116
4 TraesCS3D01G148400 chr3A 108879577 108884334 4757 True 1186.0 3851 89.5800 724 8330 5 chr3A.!!$R1 7606
5 TraesCS3D01G148400 chr3B 745194176 745196970 2794 False 3240.0 3240 87.6070 4290 7090 1 chr3B.!!$F2 2800
6 TraesCS3D01G148400 chr3B 181310754 181313537 2783 False 3221.0 3221 87.5530 4292 7090 1 chr3B.!!$F1 2798
7 TraesCS3D01G148400 chr3B 167662030 167667405 5375 False 1444.6 3666 93.7644 753 8911 5 chr3B.!!$F4 8158
8 TraesCS3D01G148400 chr3B 167643117 167643877 760 False 383.0 472 86.8335 1 704 2 chr3B.!!$F3 703
9 TraesCS3D01G148400 chr7B 244412253 244415039 2786 False 3491.0 3491 89.2620 4292 7090 1 chr7B.!!$F1 2798
10 TraesCS3D01G148400 chr1A 242786627 242789397 2770 False 3483.0 3483 89.3140 4293 7087 1 chr1A.!!$F1 2794
11 TraesCS3D01G148400 chr7D 383217111 383219746 2635 False 3280.0 3280 89.1070 4290 6939 1 chr7D.!!$F2 2649
12 TraesCS3D01G148400 chr7D 173941162 173942768 1606 False 1668.0 1668 85.4060 5196 6816 1 chr7D.!!$F1 1620
13 TraesCS3D01G148400 chr5B 137972959 137975317 2358 False 2645.0 2645 86.8940 4720 7090 1 chr5B.!!$F1 2370
14 TraesCS3D01G148400 chr2D 239715872 239717902 2030 False 2623.0 2623 89.9660 4306 6344 1 chr2D.!!$F1 2038
15 TraesCS3D01G148400 chr6B 195284786 195286475 1689 False 1962.0 1962 87.6100 4291 5990 1 chr6B.!!$F1 1699
16 TraesCS3D01G148400 chr2B 250259302 250260886 1584 False 1906.0 1906 88.3560 4291 5892 1 chr2B.!!$F1 1601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.033306 TCATATGCCTGCAAAGCCCA 60.033 50.0 5.96 0.00 0.00 5.36 F
225 226 0.259647 ATGCCTGCAAAGCCCATCTA 59.740 50.0 5.96 0.00 0.00 1.98 F
371 372 0.319641 GAGGGTTCGCGTTTGAGACT 60.320 55.0 5.77 0.00 0.00 3.24 F
1650 1822 0.250081 CTGGGGGATTTCTCGCTAGC 60.250 60.0 4.06 4.06 34.84 3.42 F
2704 2891 0.298707 CTTGTCGTGGATCGCAATCG 59.701 55.0 0.00 0.00 39.67 3.34 F
4496 4728 0.034198 TTGATCCGGTCGACAAGCAA 59.966 50.0 18.91 13.83 0.00 3.91 F
5580 5813 0.111089 CGAACTTGACGAGTGCAAGC 60.111 55.0 1.55 0.00 45.00 4.01 F
6415 6649 0.178068 GGCCACGATGTGTATGAGGT 59.822 55.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1564 0.172578 TTCTACCGCACGTCCATCTG 59.827 55.000 0.00 0.00 0.00 2.90 R
1650 1822 0.318191 ATCCTCGTCGTCATGATGCG 60.318 55.000 19.28 19.28 33.35 4.73 R
1950 2123 3.475566 TGCTGACACCTAGCCATATTC 57.524 47.619 0.00 0.00 40.42 1.75 R
3063 3268 1.066002 CGCAGCCCACAGATAAAATGG 59.934 52.381 0.00 0.00 0.00 3.16 R
4641 4873 0.558220 TTCCCAACCATGAACCCACA 59.442 50.000 0.00 0.00 0.00 4.17 R
6009 6242 0.179094 CCCCGCAGTTATTCGTGCTA 60.179 55.000 0.00 0.00 37.55 3.49 R
6470 6706 0.398318 ACTCAACCAGGCACTTCTCC 59.602 55.000 0.00 0.00 34.60 3.71 R
8067 8310 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.209640 GTGGAGACCGAGACACGAC 59.790 63.158 0.00 0.00 45.77 4.34
26 27 1.228033 TGGAGACCGAGACACGACA 60.228 57.895 0.00 0.00 45.77 4.35
28 29 0.313043 GGAGACCGAGACACGACAAA 59.687 55.000 0.00 0.00 45.77 2.83
31 32 1.001597 AGACCGAGACACGACAAAGAC 60.002 52.381 0.00 0.00 45.77 3.01
32 33 0.742505 ACCGAGACACGACAAAGACA 59.257 50.000 0.00 0.00 45.77 3.41
33 34 1.135527 ACCGAGACACGACAAAGACAA 59.864 47.619 0.00 0.00 45.77 3.18
69 70 3.880846 CGCTTCAATGCCGGCTCC 61.881 66.667 29.70 6.71 0.00 4.70
84 85 0.972883 GCTCCAGTGAGAGGTCTTGT 59.027 55.000 9.72 0.00 41.42 3.16
87 88 2.491693 CTCCAGTGAGAGGTCTTGTCTC 59.508 54.545 0.00 0.00 41.42 3.36
112 113 1.204228 GCATGAATGCGACATTGGCG 61.204 55.000 7.76 7.76 44.67 5.69
197 198 2.965147 GCAGACGCGAATGTGGCAA 61.965 57.895 15.93 0.00 35.47 4.52
221 222 0.033306 TCATATGCCTGCAAAGCCCA 60.033 50.000 5.96 0.00 0.00 5.36
225 226 0.259647 ATGCCTGCAAAGCCCATCTA 59.740 50.000 5.96 0.00 0.00 1.98
237 238 0.810031 CCCATCTAGTTTGCGTCCGG 60.810 60.000 0.00 0.00 0.00 5.14
265 266 5.845985 GAGATTTCGAACATGTGAACTGA 57.154 39.130 0.00 0.00 0.00 3.41
294 295 2.612000 CCAATAGGGTACGGGGTATCA 58.388 52.381 0.00 0.00 0.00 2.15
297 298 3.555117 ATAGGGTACGGGGTATCATGT 57.445 47.619 0.00 0.00 0.00 3.21
298 299 2.185663 AGGGTACGGGGTATCATGTT 57.814 50.000 0.00 0.00 0.00 2.71
299 300 1.766496 AGGGTACGGGGTATCATGTTG 59.234 52.381 0.00 0.00 0.00 3.33
300 301 1.202722 GGGTACGGGGTATCATGTTGG 60.203 57.143 0.00 0.00 0.00 3.77
301 302 1.764134 GGTACGGGGTATCATGTTGGA 59.236 52.381 0.00 0.00 0.00 3.53
302 303 2.370849 GGTACGGGGTATCATGTTGGAT 59.629 50.000 0.00 0.00 0.00 3.41
303 304 3.579586 GGTACGGGGTATCATGTTGGATA 59.420 47.826 0.00 0.00 0.00 2.59
304 305 4.040706 GGTACGGGGTATCATGTTGGATAA 59.959 45.833 0.00 0.00 31.90 1.75
305 306 4.081322 ACGGGGTATCATGTTGGATAAC 57.919 45.455 0.00 0.00 36.85 1.89
323 324 2.684001 ACAGAACTGTGTCCGAACAA 57.316 45.000 6.67 0.00 43.11 2.83
328 329 2.341846 ACTGTGTCCGAACAACCATT 57.658 45.000 0.00 0.00 37.08 3.16
329 330 2.650322 ACTGTGTCCGAACAACCATTT 58.350 42.857 0.00 0.00 37.08 2.32
346 347 2.410466 TTTTTGGACGTGTGAGGGC 58.590 52.632 0.00 0.00 0.00 5.19
361 362 3.733960 GGCGTTTGGAGGGTTCGC 61.734 66.667 0.00 0.00 44.95 4.70
364 365 2.248835 CGTTTGGAGGGTTCGCGTT 61.249 57.895 5.77 0.00 0.00 4.84
365 366 1.778027 CGTTTGGAGGGTTCGCGTTT 61.778 55.000 5.77 0.00 0.00 3.60
371 372 0.319641 GAGGGTTCGCGTTTGAGACT 60.320 55.000 5.77 0.00 0.00 3.24
374 375 1.289800 GGTTCGCGTTTGAGACTCCC 61.290 60.000 5.77 0.00 0.00 4.30
392 393 9.886132 GAGACTCCCTTAGAATTATGTAAAACA 57.114 33.333 0.00 0.00 0.00 2.83
426 427 8.450578 TGCCCTTTTCACTAAATCACTATATG 57.549 34.615 0.00 0.00 0.00 1.78
482 561 7.797121 AAAATCCTATTTCTCACACCCAAAT 57.203 32.000 0.00 0.00 0.00 2.32
536 615 3.876309 AAAAGCTTTGTACTCCCTCCA 57.124 42.857 13.54 0.00 0.00 3.86
540 619 4.388577 AGCTTTGTACTCCCTCCATTTT 57.611 40.909 0.00 0.00 0.00 1.82
541 620 4.336280 AGCTTTGTACTCCCTCCATTTTC 58.664 43.478 0.00 0.00 0.00 2.29
542 621 4.043435 AGCTTTGTACTCCCTCCATTTTCT 59.957 41.667 0.00 0.00 0.00 2.52
543 622 4.396478 GCTTTGTACTCCCTCCATTTTCTC 59.604 45.833 0.00 0.00 0.00 2.87
544 623 4.569719 TTGTACTCCCTCCATTTTCTCC 57.430 45.455 0.00 0.00 0.00 3.71
554 633 6.501453 TCCCTCCATTTTCTCCAAAAATCAAT 59.499 34.615 0.00 0.00 35.10 2.57
704 783 6.070881 CCAATTTATGGTGGAGGTTGATTTCA 60.071 38.462 0.00 0.00 44.85 2.69
705 784 7.364939 CCAATTTATGGTGGAGGTTGATTTCAT 60.365 37.037 0.00 0.00 44.85 2.57
706 785 6.773976 TTTATGGTGGAGGTTGATTTCATC 57.226 37.500 0.00 0.00 0.00 2.92
707 786 2.710377 TGGTGGAGGTTGATTTCATCG 58.290 47.619 0.00 0.00 0.00 3.84
708 787 2.304470 TGGTGGAGGTTGATTTCATCGA 59.696 45.455 0.00 0.00 0.00 3.59
709 788 3.244735 TGGTGGAGGTTGATTTCATCGAA 60.245 43.478 0.00 0.00 0.00 3.71
710 789 3.756434 GGTGGAGGTTGATTTCATCGAAA 59.244 43.478 0.00 0.00 35.94 3.46
711 790 4.399303 GGTGGAGGTTGATTTCATCGAAAT 59.601 41.667 1.69 1.69 43.77 2.17
712 791 5.335127 GTGGAGGTTGATTTCATCGAAATG 58.665 41.667 6.68 0.00 41.56 2.32
713 792 5.123820 GTGGAGGTTGATTTCATCGAAATGA 59.876 40.000 6.68 0.00 41.56 2.57
721 800 3.348647 TTCATCGAAATGAAGGGAGCA 57.651 42.857 0.00 0.00 44.94 4.26
722 801 3.565764 TCATCGAAATGAAGGGAGCAT 57.434 42.857 0.00 0.00 38.97 3.79
742 821 0.863144 CGTGTTTCGACGTTCCCAAT 59.137 50.000 0.00 0.00 42.86 3.16
743 822 1.397945 CGTGTTTCGACGTTCCCAATG 60.398 52.381 0.00 0.00 42.86 2.82
748 827 1.504359 TCGACGTTCCCAATGTGTTC 58.496 50.000 0.00 0.00 0.00 3.18
755 834 3.796178 CGTTCCCAATGTGTTCAACAAAG 59.204 43.478 0.00 0.00 43.61 2.77
777 856 1.409241 GCACCACATGTCCAGATCCAT 60.409 52.381 0.00 0.00 0.00 3.41
1173 1263 3.117171 GCTGTGCAGGTGAGCTCG 61.117 66.667 9.64 0.00 34.99 5.03
1187 1277 1.194547 GAGCTCGTAGATCTCTCGCTG 59.805 57.143 0.00 4.02 45.32 5.18
1228 1319 4.694037 AGCTACTTTTTCGCCTCGTTATTT 59.306 37.500 0.00 0.00 0.00 1.40
1251 1342 1.714460 GCCGTATTCATCGAAGCGTAG 59.286 52.381 0.00 0.00 0.00 3.51
1258 1359 4.542662 TTCATCGAAGCGTAGTACTACC 57.457 45.455 24.06 17.27 32.61 3.18
1286 1387 2.861750 GCGACAGGTGATCTCTAGCATG 60.862 54.545 0.00 0.00 0.00 4.06
1294 1395 2.699321 TGATCTCTAGCATGCTTGAGCT 59.301 45.455 38.30 33.26 42.66 4.09
1302 1403 2.019249 GCATGCTTGAGCTAATCCACA 58.981 47.619 11.37 0.00 42.66 4.17
1349 1450 4.086457 AGTTCCAATTATTCAGGCCGTTT 58.914 39.130 0.00 0.00 0.00 3.60
1350 1451 4.082245 AGTTCCAATTATTCAGGCCGTTTG 60.082 41.667 0.00 0.00 0.00 2.93
1351 1452 3.426615 TCCAATTATTCAGGCCGTTTGT 58.573 40.909 0.00 0.00 0.00 2.83
1352 1453 3.829601 TCCAATTATTCAGGCCGTTTGTT 59.170 39.130 0.00 0.00 0.00 2.83
1353 1454 4.282195 TCCAATTATTCAGGCCGTTTGTTT 59.718 37.500 0.00 0.00 0.00 2.83
1368 1494 4.673061 CGTTTGTTTGTTGTTGCAGTAGGA 60.673 41.667 0.00 0.00 0.00 2.94
1386 1515 6.207025 CAGTAGGAGGTAGTCGTATGCTAATT 59.793 42.308 0.00 0.00 0.00 1.40
1388 1517 4.215827 AGGAGGTAGTCGTATGCTAATTCG 59.784 45.833 0.00 0.00 0.00 3.34
1428 1600 1.980232 ACCAGATGGACGTGCGGTA 60.980 57.895 5.72 0.00 38.94 4.02
1449 1621 3.715495 AGAACTGATCTCGCTGCTATTG 58.285 45.455 0.00 0.00 30.46 1.90
1521 1693 1.467374 GGCGTGGTTCCATTCAAATCG 60.467 52.381 0.00 0.00 0.00 3.34
1650 1822 0.250081 CTGGGGGATTTCTCGCTAGC 60.250 60.000 4.06 4.06 34.84 3.42
1714 1886 4.963318 TTCAAGTGAGAGTGATTGGAGT 57.037 40.909 0.00 0.00 0.00 3.85
1747 1919 5.286438 GTTGTGTTAACTCAAATTGGGGAC 58.714 41.667 21.16 6.83 32.13 4.46
1808 1980 2.682893 GCAGAGGGTGCGATAACTG 58.317 57.895 0.00 0.00 43.99 3.16
1891 2063 4.070716 AGCTTTTCAGATCACAAGTGGAG 58.929 43.478 0.00 0.00 0.00 3.86
1901 2073 5.760253 AGATCACAAGTGGAGTACAAACAAG 59.240 40.000 0.00 0.00 0.00 3.16
1934 2106 8.807948 AATTCAAGTAGCTGTACAACCATAAT 57.192 30.769 0.00 0.00 0.00 1.28
1977 2150 3.134458 GGCTAGGTGTCAGCATTGTATC 58.866 50.000 4.59 0.00 40.95 2.24
1997 2170 5.973651 ATCACAATGAGTTGCGTAGTATG 57.026 39.130 0.00 0.00 38.96 2.39
2015 2188 4.762765 AGTATGTTGTGTAATTTTCCGGCA 59.237 37.500 0.00 0.00 0.00 5.69
2081 2254 7.698970 GTGTGTAATTTTGTGGGGAATAATACG 59.301 37.037 0.00 0.00 0.00 3.06
2088 2261 5.100344 TGTGGGGAATAATACGCACTTAA 57.900 39.130 11.18 0.00 46.73 1.85
2094 2274 6.646240 GGGGAATAATACGCACTTAACGAATA 59.354 38.462 0.00 0.00 0.00 1.75
2104 2284 7.428020 ACGCACTTAACGAATATGGAGTAATA 58.572 34.615 0.00 0.00 0.00 0.98
2129 2309 8.594881 AGTAGTACATTAAGAGCATATGCAAC 57.405 34.615 28.62 20.74 45.16 4.17
2150 2330 6.430451 CAACGACCTTCCAGATTAATATTGC 58.570 40.000 0.00 0.00 0.00 3.56
2161 2341 6.650807 CCAGATTAATATTGCGCTAGAAAGGA 59.349 38.462 9.73 0.00 0.00 3.36
2162 2342 7.173218 CCAGATTAATATTGCGCTAGAAAGGAA 59.827 37.037 9.73 0.00 0.00 3.36
2163 2343 8.559536 CAGATTAATATTGCGCTAGAAAGGAAA 58.440 33.333 9.73 0.00 0.00 3.13
2164 2344 8.778358 AGATTAATATTGCGCTAGAAAGGAAAG 58.222 33.333 9.73 0.00 0.00 2.62
2165 2345 5.757850 AATATTGCGCTAGAAAGGAAAGG 57.242 39.130 9.73 0.00 0.00 3.11
2216 2396 0.751643 AACACAAAGGCTGCCGAACT 60.752 50.000 13.96 0.00 0.00 3.01
2220 2400 2.084546 ACAAAGGCTGCCGAACTAATC 58.915 47.619 13.96 0.00 0.00 1.75
2244 2424 9.692325 ATCAGAACAGATAGGCTTTTAGAAATT 57.308 29.630 0.00 0.00 0.00 1.82
2251 2431 9.696917 CAGATAGGCTTTTAGAAATTTGTTTGT 57.303 29.630 0.00 0.00 0.00 2.83
2376 2563 1.695242 ACTGGTGTTCGTGGTGGATTA 59.305 47.619 0.00 0.00 0.00 1.75
2396 2583 2.456073 TTAGGCTACCTCTGGACTCC 57.544 55.000 0.00 0.00 34.61 3.85
2514 2701 2.430610 CGGAGGAGAGGGAAGCCTG 61.431 68.421 0.00 0.00 30.70 4.85
2599 2786 2.798976 TTGGTTGCAAGAAGACATGC 57.201 45.000 0.00 0.00 40.52 4.06
2600 2787 0.961019 TGGTTGCAAGAAGACATGCC 59.039 50.000 0.00 0.00 39.56 4.40
2643 2830 5.412904 GTGAATGGAGCAGCTATAATAACCC 59.587 44.000 0.00 0.00 0.00 4.11
2704 2891 0.298707 CTTGTCGTGGATCGCAATCG 59.701 55.000 0.00 0.00 39.67 3.34
2762 2949 8.514594 CAGGTAAGTGATGCTTTTCTCAAATTA 58.485 33.333 0.00 0.00 38.57 1.40
2763 2950 8.734386 AGGTAAGTGATGCTTTTCTCAAATTAG 58.266 33.333 0.00 0.00 38.57 1.73
2772 2961 9.857656 ATGCTTTTCTCAAATTAGATGATAGGA 57.142 29.630 0.00 0.00 0.00 2.94
2788 2977 5.765510 TGATAGGATGCCCTTTACATGTTT 58.234 37.500 2.30 0.00 40.78 2.83
2955 3152 7.331934 GTCAGTTTAGTGCTTGATCAGTTATGA 59.668 37.037 0.00 0.00 40.50 2.15
2982 3179 4.497473 TGTGATTTTAGTTGGCTTTCGG 57.503 40.909 0.00 0.00 0.00 4.30
3011 3216 8.417106 TGGTGTTCTTACATGAAAAGCAAAATA 58.583 29.630 0.00 0.00 38.32 1.40
3056 3261 0.977395 ACAGAGTACAGCCCAAGGAC 59.023 55.000 0.00 0.00 0.00 3.85
3061 3266 2.706190 GAGTACAGCCCAAGGACCATAT 59.294 50.000 0.00 0.00 0.00 1.78
3063 3268 3.646637 AGTACAGCCCAAGGACCATATAC 59.353 47.826 0.00 0.00 0.00 1.47
3084 3289 0.740737 ATTTTATCTGTGGGCTGCGC 59.259 50.000 10.06 10.06 0.00 6.09
3106 3311 4.380867 GCCCTTCAATGGTGTCACTTTATG 60.381 45.833 2.35 0.00 0.00 1.90
3114 3319 4.709250 TGGTGTCACTTTATGTTAGTGCA 58.291 39.130 2.35 0.00 42.12 4.57
3119 3324 7.201530 GGTGTCACTTTATGTTAGTGCATACTC 60.202 40.741 2.35 0.00 42.12 2.59
3148 3353 6.976934 ACTAATGTTGGGTTTTGAACTCAT 57.023 33.333 0.00 0.00 42.47 2.90
3151 3356 4.647424 TGTTGGGTTTTGAACTCATGTC 57.353 40.909 0.00 0.00 42.47 3.06
3162 3367 5.306532 TGAACTCATGTCGGTAACTAGTC 57.693 43.478 0.00 0.00 0.00 2.59
3202 3407 5.649782 ATTTTAGAGTGGATGGTGCTTTG 57.350 39.130 0.00 0.00 0.00 2.77
3215 3420 5.818136 TGGTGCTTTGCTGATTATACTTC 57.182 39.130 0.00 0.00 0.00 3.01
3253 3458 6.500336 TCCCTACCTCATATCTTGGTATACC 58.500 44.000 15.50 15.50 35.99 2.73
3254 3459 6.047479 TCCCTACCTCATATCTTGGTATACCA 59.953 42.308 21.05 21.05 45.94 3.25
3270 3475 7.973402 TGGTATACCAAGCACATTATATGACT 58.027 34.615 22.59 0.00 44.35 3.41
3358 3565 5.359860 TGACTGTCTCAACTTTACTGACTCA 59.640 40.000 9.51 0.00 0.00 3.41
3360 3567 6.640518 ACTGTCTCAACTTTACTGACTCAAA 58.359 36.000 0.00 0.00 0.00 2.69
3426 3633 1.683385 GCCTAGCATTCATGGGGAAAC 59.317 52.381 0.00 0.00 39.39 2.78
3438 3645 6.395780 TCATGGGGAAACTTTATCTGGTTA 57.604 37.500 0.00 0.00 0.00 2.85
3604 3811 6.662414 TCTGCCTATTAACATGTTTTCTCG 57.338 37.500 17.78 3.51 0.00 4.04
3635 3842 6.248569 AGTCCCACATCGTAATTAATTCCT 57.751 37.500 3.39 0.00 0.00 3.36
3636 3843 6.659824 AGTCCCACATCGTAATTAATTCCTT 58.340 36.000 3.39 0.00 0.00 3.36
3637 3844 6.542370 AGTCCCACATCGTAATTAATTCCTTG 59.458 38.462 3.39 1.96 0.00 3.61
3638 3845 6.317893 GTCCCACATCGTAATTAATTCCTTGT 59.682 38.462 3.39 2.55 0.00 3.16
3639 3846 7.496591 GTCCCACATCGTAATTAATTCCTTGTA 59.503 37.037 3.39 0.00 0.00 2.41
3640 3847 7.713507 TCCCACATCGTAATTAATTCCTTGTAG 59.286 37.037 3.39 0.00 0.00 2.74
3678 3901 5.675575 GCTTTTGCTCCTGTCATCATAACAG 60.676 44.000 0.00 0.00 41.93 3.16
3698 3921 7.907214 AACAGACCTATTTAACTCATGACAC 57.093 36.000 0.00 0.00 0.00 3.67
3699 3922 6.100004 ACAGACCTATTTAACTCATGACACG 58.900 40.000 0.00 0.00 0.00 4.49
3724 3948 7.066525 CGTGTAATGGTCTATTGTACCCATTTT 59.933 37.037 14.49 0.00 43.40 1.82
3765 3989 2.867624 TGGATCTATGCTCCATTTGCC 58.132 47.619 0.00 0.00 37.87 4.52
3776 4000 1.794512 CCATTTGCCGAAAAGGGTTG 58.205 50.000 6.19 0.00 43.36 3.77
3779 4003 1.770294 TTTGCCGAAAAGGGTTGAGT 58.230 45.000 0.00 0.00 41.48 3.41
3791 4015 1.334869 GGGTTGAGTGCAGTGTCTTTG 59.665 52.381 0.00 0.00 0.00 2.77
3797 4021 4.009675 TGAGTGCAGTGTCTTTGAAGTTT 58.990 39.130 0.00 0.00 0.00 2.66
3804 4028 6.873076 TGCAGTGTCTTTGAAGTTTGAAAAAT 59.127 30.769 0.00 0.00 0.00 1.82
3815 4039 8.870160 TGAAGTTTGAAAAATATTCTGTGTGG 57.130 30.769 0.00 0.00 0.00 4.17
3816 4040 8.474025 TGAAGTTTGAAAAATATTCTGTGTGGT 58.526 29.630 0.00 0.00 0.00 4.16
3817 4041 8.871686 AAGTTTGAAAAATATTCTGTGTGGTC 57.128 30.769 0.00 0.00 0.00 4.02
3818 4042 8.006298 AGTTTGAAAAATATTCTGTGTGGTCA 57.994 30.769 0.00 0.00 0.00 4.02
3819 4043 8.641541 AGTTTGAAAAATATTCTGTGTGGTCAT 58.358 29.630 0.00 0.00 0.00 3.06
3820 4044 9.260002 GTTTGAAAAATATTCTGTGTGGTCATT 57.740 29.630 0.00 0.00 0.00 2.57
3837 4061 7.347222 TGTGGTCATTATTAGTCAGGGTAGATT 59.653 37.037 0.00 0.00 0.00 2.40
3841 4065 8.421784 GTCATTATTAGTCAGGGTAGATTGTGA 58.578 37.037 0.00 0.00 0.00 3.58
3842 4066 8.421784 TCATTATTAGTCAGGGTAGATTGTGAC 58.578 37.037 0.00 0.00 39.74 3.67
3843 4067 7.727578 TTATTAGTCAGGGTAGATTGTGACA 57.272 36.000 4.30 0.00 41.52 3.58
3844 4068 6.814954 ATTAGTCAGGGTAGATTGTGACAT 57.185 37.500 4.30 0.00 41.52 3.06
3845 4069 6.620877 TTAGTCAGGGTAGATTGTGACATT 57.379 37.500 4.30 0.00 41.52 2.71
3847 4071 4.287067 AGTCAGGGTAGATTGTGACATTGT 59.713 41.667 4.30 0.00 41.52 2.71
3848 4072 4.393062 GTCAGGGTAGATTGTGACATTGTG 59.607 45.833 0.00 0.00 39.33 3.33
3849 4073 4.041567 TCAGGGTAGATTGTGACATTGTGT 59.958 41.667 0.00 0.00 0.00 3.72
3850 4074 4.154737 CAGGGTAGATTGTGACATTGTGTG 59.845 45.833 0.00 0.00 0.00 3.82
3851 4075 4.072131 GGGTAGATTGTGACATTGTGTGT 58.928 43.478 0.00 0.00 45.83 3.72
3864 4088 6.455360 ACATTGTGTGTCAGAACTGAATTT 57.545 33.333 6.08 0.00 41.85 1.82
3865 4089 6.498304 ACATTGTGTGTCAGAACTGAATTTC 58.502 36.000 6.08 0.00 41.85 2.17
3885 4109 8.985315 AATTTCTCCATAGTATGATGCAAAGA 57.015 30.769 11.91 2.42 0.00 2.52
3905 4129 4.631234 AGAGGTCACCTAAATGGATACCA 58.369 43.478 0.00 0.00 42.52 3.25
3912 4136 3.202151 ACCTAAATGGATACCACCCTGTG 59.798 47.826 0.00 0.00 35.80 3.66
3935 4159 6.578919 GTGGACTTTTTCGAATTCATCTTCAC 59.421 38.462 6.22 0.00 0.00 3.18
3936 4160 6.086871 GGACTTTTTCGAATTCATCTTCACC 58.913 40.000 6.22 0.00 0.00 4.02
3937 4161 6.072452 GGACTTTTTCGAATTCATCTTCACCT 60.072 38.462 6.22 0.00 0.00 4.00
3938 4162 7.277174 ACTTTTTCGAATTCATCTTCACCTT 57.723 32.000 6.22 0.00 0.00 3.50
3939 4163 7.363431 ACTTTTTCGAATTCATCTTCACCTTC 58.637 34.615 6.22 0.00 0.00 3.46
3940 4164 6.875948 TTTTCGAATTCATCTTCACCTTCA 57.124 33.333 6.22 0.00 0.00 3.02
3941 4165 5.862924 TTCGAATTCATCTTCACCTTCAC 57.137 39.130 6.22 0.00 0.00 3.18
3952 4176 5.010933 TCTTCACCTTCACGATCTTCTACT 58.989 41.667 0.00 0.00 0.00 2.57
3955 4179 5.470368 TCACCTTCACGATCTTCTACTTTG 58.530 41.667 0.00 0.00 0.00 2.77
3962 4186 6.455647 TCACGATCTTCTACTTTGTGTTGAT 58.544 36.000 0.00 0.00 31.12 2.57
3964 4188 7.011773 CACGATCTTCTACTTTGTGTTGATTG 58.988 38.462 0.00 0.00 31.12 2.67
3977 4203 9.121517 CTTTGTGTTGATTGTAATGATCTTGTC 57.878 33.333 0.00 0.00 0.00 3.18
4046 4272 0.892358 CCATGTCAGGTGCTTGCACT 60.892 55.000 22.55 8.42 0.00 4.40
4067 4293 6.381801 CACTGGCTTTCTTTTACATAACAGG 58.618 40.000 0.00 0.00 0.00 4.00
4495 4727 0.389817 CTTGATCCGGTCGACAAGCA 60.390 55.000 18.91 8.26 34.46 3.91
4496 4728 0.034198 TTGATCCGGTCGACAAGCAA 59.966 50.000 18.91 13.83 0.00 3.91
4641 4873 2.665000 CGCCACCAGTCCATGAGT 59.335 61.111 0.00 0.00 0.00 3.41
4650 4882 1.072173 CAGTCCATGAGTGTGGGTTCA 59.928 52.381 0.00 0.00 39.80 3.18
4659 4891 0.178975 GTGTGGGTTCATGGTTGGGA 60.179 55.000 0.00 0.00 0.00 4.37
4727 4959 1.909302 CCTAGAGAAGGGGCAGTCAAA 59.091 52.381 0.00 0.00 42.32 2.69
4782 5014 4.521062 AGGAGACAGCGCGGATGC 62.521 66.667 16.26 7.73 37.91 3.91
5007 5239 1.685765 AGGGGCATCGCTGAGTGTA 60.686 57.895 0.00 0.00 34.70 2.90
5174 5406 4.172512 CAGGGGCATGAGCTCGCT 62.173 66.667 9.64 0.00 44.30 4.93
5202 5434 0.250640 GCCCATTGAGCCATCGATCT 60.251 55.000 0.00 0.00 0.00 2.75
5349 5581 2.351244 CCAGAGCCACCGCAGTCTA 61.351 63.158 0.00 0.00 37.52 2.59
5563 5796 0.738975 CGGAATAGCACAGAGGACGA 59.261 55.000 0.00 0.00 0.00 4.20
5574 5807 1.267261 CAGAGGACGAACTTGACGAGT 59.733 52.381 0.00 0.00 41.47 4.18
5575 5808 1.267261 AGAGGACGAACTTGACGAGTG 59.733 52.381 0.00 0.00 39.00 3.51
5576 5809 0.318784 AGGACGAACTTGACGAGTGC 60.319 55.000 0.00 0.00 39.00 4.40
5577 5810 0.596600 GGACGAACTTGACGAGTGCA 60.597 55.000 1.55 0.00 39.00 4.57
5578 5811 1.205657 GACGAACTTGACGAGTGCAA 58.794 50.000 1.55 0.00 39.00 4.08
5579 5812 1.190323 GACGAACTTGACGAGTGCAAG 59.810 52.381 1.55 0.00 46.20 4.01
5580 5813 0.111089 CGAACTTGACGAGTGCAAGC 60.111 55.000 1.55 0.00 45.00 4.01
5581 5814 0.235926 GAACTTGACGAGTGCAAGCC 59.764 55.000 0.00 0.00 45.00 4.35
5582 5815 1.166531 AACTTGACGAGTGCAAGCCC 61.167 55.000 0.00 0.00 45.00 5.19
5583 5816 2.281484 TTGACGAGTGCAAGCCCC 60.281 61.111 0.00 0.00 0.00 5.80
5584 5817 2.738213 CTTGACGAGTGCAAGCCCCT 62.738 60.000 0.00 0.00 36.66 4.79
5585 5818 1.476845 TTGACGAGTGCAAGCCCCTA 61.477 55.000 0.00 0.00 0.00 3.53
5586 5819 1.264749 TGACGAGTGCAAGCCCCTAT 61.265 55.000 0.00 0.00 0.00 2.57
5794 6027 2.672651 CATGCAAGACCGTGGCCA 60.673 61.111 0.00 0.00 0.00 5.36
5894 6127 1.675310 CCGTGGCATGGCAGAAGAA 60.675 57.895 24.03 0.00 0.00 2.52
5928 6161 2.545322 GGCGTATAAGGATATAGCCGGC 60.545 54.545 21.89 21.89 34.37 6.13
6047 6280 3.385384 CAGAGAGTCGCCCTGCCA 61.385 66.667 0.00 0.00 0.00 4.92
6070 6303 1.410083 GCCCTTCCTTGTGCCATATCA 60.410 52.381 0.00 0.00 0.00 2.15
6163 6396 0.377203 GCGATGACCGAACCCAAATC 59.623 55.000 0.00 0.00 41.76 2.17
6171 6404 2.033448 AACCCAAATCGGCGCAGA 59.967 55.556 13.82 13.82 0.00 4.26
6365 6599 1.754226 GTGGTCAAGTTTTGGAGCCAA 59.246 47.619 0.00 0.00 32.47 4.52
6408 6642 1.302511 GACCTTGGCCACGATGTGT 60.303 57.895 11.54 0.00 0.00 3.72
6415 6649 0.178068 GGCCACGATGTGTATGAGGT 59.822 55.000 0.00 0.00 0.00 3.85
6452 6688 3.790437 CAGCTCCTGGGCATCGGT 61.790 66.667 9.36 0.00 34.17 4.69
6489 6725 0.398318 GGAGAAGTGCCTGGTTGAGT 59.602 55.000 0.00 0.00 0.00 3.41
6554 6790 3.053842 ACATCCATGAAGTCCTGCTTGAT 60.054 43.478 0.00 0.00 37.59 2.57
6600 6836 2.746277 GCGTTGAAGCCATCGGGT 60.746 61.111 0.00 0.00 36.35 5.28
6642 6878 1.675641 GCGTTTCACTGCCTCCCAT 60.676 57.895 0.00 0.00 0.00 4.00
6660 6896 3.073062 CCCATATCTCCTCCGGACAAAAT 59.927 47.826 0.00 0.00 0.00 1.82
6662 6898 4.444876 CCATATCTCCTCCGGACAAAATGT 60.445 45.833 0.00 0.00 0.00 2.71
6678 6914 1.945354 ATGTCGCGTCAAGGTCGGAT 61.945 55.000 10.61 0.00 0.00 4.18
6720 6956 1.934220 GCGACAGGTCCATCGAGTGA 61.934 60.000 17.28 0.00 40.86 3.41
6861 7098 1.014044 GTCGAAATGAGCACTGCCGA 61.014 55.000 0.00 0.00 0.00 5.54
7020 7257 1.602237 GATTCGGTCTTCCTGGGCA 59.398 57.895 0.00 0.00 0.00 5.36
7088 7325 3.959975 GTTGCCGACCGCTTTGCA 61.960 61.111 0.00 0.00 38.78 4.08
7114 7351 3.936564 TGCATGTGTAGTGAACTGCATA 58.063 40.909 4.52 2.63 40.55 3.14
7195 7432 6.796785 TGATCACTGGATAATTCTGTCTCA 57.203 37.500 0.00 0.00 32.67 3.27
7285 7522 3.008375 TCTGATTCTGCAGCACTAAACCT 59.992 43.478 9.47 0.00 35.86 3.50
7360 7599 4.039124 TGTGCTAGTTCATTGAGTGAGTGA 59.961 41.667 0.00 0.00 38.29 3.41
7388 7627 1.351350 AGTACTGAACAAGGGCCTTCC 59.649 52.381 17.86 9.29 0.00 3.46
7748 7991 5.006386 CAGGTTCCTTTAAGCATGACTCTT 58.994 41.667 0.00 0.00 38.08 2.85
7796 8039 1.275666 TCCAGCGAATTCTTCCCTCA 58.724 50.000 3.52 0.00 0.00 3.86
7977 8220 9.307121 CATTTCTGTAGTGTACTTCTAGAATGG 57.693 37.037 5.44 0.00 0.00 3.16
7978 8221 8.418597 TTTCTGTAGTGTACTTCTAGAATGGT 57.581 34.615 5.44 4.13 0.00 3.55
7979 8222 9.524496 TTTCTGTAGTGTACTTCTAGAATGGTA 57.476 33.333 5.44 3.11 0.00 3.25
7980 8223 8.503458 TCTGTAGTGTACTTCTAGAATGGTAC 57.497 38.462 20.36 20.36 36.19 3.34
7981 8224 8.327271 TCTGTAGTGTACTTCTAGAATGGTACT 58.673 37.037 24.36 19.09 36.48 2.73
7982 8225 8.503458 TGTAGTGTACTTCTAGAATGGTACTC 57.497 38.462 24.36 21.87 36.48 2.59
7983 8226 7.555554 TGTAGTGTACTTCTAGAATGGTACTCC 59.444 40.741 24.36 18.09 36.48 3.85
7984 8227 6.733509 AGTGTACTTCTAGAATGGTACTCCT 58.266 40.000 24.36 19.31 36.48 3.69
7985 8228 6.829811 AGTGTACTTCTAGAATGGTACTCCTC 59.170 42.308 24.36 16.21 36.48 3.71
7986 8229 6.039605 GTGTACTTCTAGAATGGTACTCCTCC 59.960 46.154 24.36 11.42 36.48 4.30
7987 8230 4.548669 ACTTCTAGAATGGTACTCCTCCC 58.451 47.826 5.44 0.00 34.23 4.30
7988 8231 3.225177 TCTAGAATGGTACTCCTCCCG 57.775 52.381 0.00 0.00 34.23 5.14
7989 8232 2.512896 TCTAGAATGGTACTCCTCCCGT 59.487 50.000 0.00 0.00 34.23 5.28
7990 8233 2.249309 AGAATGGTACTCCTCCCGTT 57.751 50.000 0.00 0.00 32.65 4.44
7991 8234 2.108970 AGAATGGTACTCCTCCCGTTC 58.891 52.381 0.00 0.00 43.91 3.95
7992 8235 0.822164 AATGGTACTCCTCCCGTTCG 59.178 55.000 0.00 0.00 34.23 3.95
7993 8236 1.041447 ATGGTACTCCTCCCGTTCGG 61.041 60.000 4.08 4.08 34.23 4.30
7994 8237 1.379044 GGTACTCCTCCCGTTCGGA 60.379 63.158 13.08 0.00 38.83 4.55
7995 8238 0.967380 GGTACTCCTCCCGTTCGGAA 60.967 60.000 13.08 0.00 41.40 4.30
7996 8239 1.109609 GTACTCCTCCCGTTCGGAAT 58.890 55.000 13.08 0.00 41.40 3.01
7997 8240 1.479730 GTACTCCTCCCGTTCGGAATT 59.520 52.381 13.08 0.00 41.40 2.17
7998 8241 1.856629 ACTCCTCCCGTTCGGAATTA 58.143 50.000 13.08 0.00 41.40 1.40
7999 8242 1.479730 ACTCCTCCCGTTCGGAATTAC 59.520 52.381 13.08 0.00 41.40 1.89
8000 8243 1.755380 CTCCTCCCGTTCGGAATTACT 59.245 52.381 13.08 0.00 41.40 2.24
8001 8244 2.167900 CTCCTCCCGTTCGGAATTACTT 59.832 50.000 13.08 0.00 41.40 2.24
8002 8245 2.093869 TCCTCCCGTTCGGAATTACTTG 60.094 50.000 13.08 0.00 41.40 3.16
8003 8246 2.354403 CCTCCCGTTCGGAATTACTTGT 60.354 50.000 13.08 0.00 41.40 3.16
8004 8247 2.928116 CTCCCGTTCGGAATTACTTGTC 59.072 50.000 13.08 0.00 41.40 3.18
8005 8248 1.657094 CCCGTTCGGAATTACTTGTCG 59.343 52.381 13.08 0.00 0.00 4.35
8006 8249 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
8007 8250 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
8008 8251 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
8009 8252 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
8010 8253 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
8011 8254 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
8012 8255 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
8013 8256 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
8014 8257 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
8015 8258 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
8016 8259 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
8017 8260 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
8018 8261 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
8019 8262 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
8020 8263 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
8021 8264 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
8022 8265 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
8023 8266 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
8024 8267 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
8025 8268 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
8026 8269 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
8027 8270 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
8028 8271 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
8029 8272 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
8030 8273 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
8031 8274 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
8057 8300 8.731275 TTAGTTCATGATACATCCATTTTCGT 57.269 30.769 0.00 0.00 0.00 3.85
8058 8301 7.019774 AGTTCATGATACATCCATTTTCGTG 57.980 36.000 0.00 0.00 0.00 4.35
8059 8302 6.823182 AGTTCATGATACATCCATTTTCGTGA 59.177 34.615 0.00 0.00 32.15 4.35
8060 8303 6.603237 TCATGATACATCCATTTTCGTGAC 57.397 37.500 0.00 0.00 29.76 3.67
8061 8304 6.112058 TCATGATACATCCATTTTCGTGACA 58.888 36.000 0.00 0.00 29.76 3.58
8062 8305 6.597280 TCATGATACATCCATTTTCGTGACAA 59.403 34.615 0.00 0.00 29.76 3.18
8063 8306 6.421377 TGATACATCCATTTTCGTGACAAG 57.579 37.500 0.00 0.00 0.00 3.16
8064 8307 5.937540 TGATACATCCATTTTCGTGACAAGT 59.062 36.000 0.00 0.00 0.00 3.16
8065 8308 7.100409 TGATACATCCATTTTCGTGACAAGTA 58.900 34.615 0.00 0.00 0.00 2.24
8066 8309 7.604545 TGATACATCCATTTTCGTGACAAGTAA 59.395 33.333 0.00 0.00 0.00 2.24
8067 8310 6.817765 ACATCCATTTTCGTGACAAGTAAT 57.182 33.333 0.00 0.00 0.00 1.89
8068 8311 7.214467 ACATCCATTTTCGTGACAAGTAATT 57.786 32.000 0.00 0.00 0.00 1.40
8069 8312 7.305474 ACATCCATTTTCGTGACAAGTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
8070 8313 6.249035 TCCATTTTCGTGACAAGTAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
8071 8314 5.086058 CCATTTTCGTGACAAGTAATTCCG 58.914 41.667 0.00 0.00 0.00 4.30
8072 8315 5.106869 CCATTTTCGTGACAAGTAATTCCGA 60.107 40.000 0.00 0.00 0.00 4.55
8073 8316 5.987777 TTTTCGTGACAAGTAATTCCGAA 57.012 34.783 0.00 0.00 0.00 4.30
8074 8317 4.977741 TTCGTGACAAGTAATTCCGAAC 57.022 40.909 0.00 0.00 0.00 3.95
8075 8318 2.981805 TCGTGACAAGTAATTCCGAACG 59.018 45.455 0.00 0.00 0.00 3.95
8076 8319 2.091588 CGTGACAAGTAATTCCGAACGG 59.908 50.000 6.94 6.94 0.00 4.44
8077 8320 3.319755 GTGACAAGTAATTCCGAACGGA 58.680 45.455 12.04 12.04 43.52 4.69
8078 8321 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
8079 8322 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
8080 8323 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
8081 8324 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
8373 8769 1.897560 AAGCCAGCCTGTACAAGTTC 58.102 50.000 0.00 0.00 0.00 3.01
8377 8773 2.795329 CCAGCCTGTACAAGTTCCATT 58.205 47.619 0.00 0.00 0.00 3.16
8406 8802 3.259064 TGGAAAGAAAGAAGGCGATACG 58.741 45.455 0.00 0.00 0.00 3.06
8420 8816 0.569349 GATACGAACGCAACGGCTAC 59.431 55.000 0.00 0.00 38.10 3.58
8522 8918 3.394674 TCACCACGAATTTAGCACTCA 57.605 42.857 0.00 0.00 0.00 3.41
8525 8921 2.930040 ACCACGAATTTAGCACTCATCG 59.070 45.455 0.00 0.00 36.45 3.84
8555 8951 4.501571 GCAGACTGAGAAGTGTGGAAACTA 60.502 45.833 6.65 0.00 34.18 2.24
8584 8980 4.826274 TGGATTTGTCGAAAGGAGATCT 57.174 40.909 0.00 0.00 0.00 2.75
8606 9002 2.290916 GACGCCGAGATGATGTAGAGAA 59.709 50.000 0.00 0.00 0.00 2.87
8608 9004 2.550180 CGCCGAGATGATGTAGAGAAGA 59.450 50.000 0.00 0.00 0.00 2.87
8609 9005 3.003793 CGCCGAGATGATGTAGAGAAGAA 59.996 47.826 0.00 0.00 0.00 2.52
8610 9006 4.545610 GCCGAGATGATGTAGAGAAGAAG 58.454 47.826 0.00 0.00 0.00 2.85
8611 9007 4.037446 GCCGAGATGATGTAGAGAAGAAGT 59.963 45.833 0.00 0.00 0.00 3.01
8612 9008 5.757886 CCGAGATGATGTAGAGAAGAAGTC 58.242 45.833 0.00 0.00 0.00 3.01
8613 9009 5.298026 CCGAGATGATGTAGAGAAGAAGTCA 59.702 44.000 0.00 0.00 0.00 3.41
8614 9010 6.198687 CGAGATGATGTAGAGAAGAAGTCAC 58.801 44.000 0.00 0.00 0.00 3.67
8615 9011 6.463995 AGATGATGTAGAGAAGAAGTCACC 57.536 41.667 0.00 0.00 0.00 4.02
8616 9012 4.703645 TGATGTAGAGAAGAAGTCACCG 57.296 45.455 0.00 0.00 0.00 4.94
8617 9013 4.079970 TGATGTAGAGAAGAAGTCACCGT 58.920 43.478 0.00 0.00 0.00 4.83
8618 9014 4.156190 TGATGTAGAGAAGAAGTCACCGTC 59.844 45.833 0.00 0.00 0.00 4.79
8619 9015 3.752665 TGTAGAGAAGAAGTCACCGTCT 58.247 45.455 0.00 0.00 0.00 4.18
8620 9016 3.502595 TGTAGAGAAGAAGTCACCGTCTG 59.497 47.826 0.00 0.00 29.35 3.51
8621 9017 1.271102 AGAGAAGAAGTCACCGTCTGC 59.729 52.381 0.00 0.00 29.35 4.26
8622 9018 0.039074 AGAAGAAGTCACCGTCTGCG 60.039 55.000 0.00 0.00 30.62 5.18
8623 9019 0.318784 GAAGAAGTCACCGTCTGCGT 60.319 55.000 0.00 0.00 36.15 5.24
8624 9020 0.104304 AAGAAGTCACCGTCTGCGTT 59.896 50.000 0.00 0.00 36.15 4.84
8625 9021 0.597637 AGAAGTCACCGTCTGCGTTG 60.598 55.000 0.00 0.00 36.15 4.10
8626 9022 2.159272 GAAGTCACCGTCTGCGTTGC 62.159 60.000 0.00 0.00 36.15 4.17
8627 9023 2.916502 AAGTCACCGTCTGCGTTGCA 62.917 55.000 0.00 0.00 36.92 4.08
8628 9024 2.202946 TCACCGTCTGCGTTGCAA 60.203 55.556 0.00 0.00 38.41 4.08
8633 9029 0.725784 CCGTCTGCGTTGCAAATCAC 60.726 55.000 0.00 0.00 38.41 3.06
8641 9037 0.387239 GTTGCAAATCACTCGGCACC 60.387 55.000 0.00 0.00 35.74 5.01
8651 9047 0.687354 ACTCGGCACCTTGAAGACAT 59.313 50.000 0.00 0.00 0.00 3.06
8654 9050 1.207089 TCGGCACCTTGAAGACATAGG 59.793 52.381 0.00 0.00 33.65 2.57
8658 9054 3.135530 GGCACCTTGAAGACATAGGAGAT 59.864 47.826 0.00 0.00 32.62 2.75
8664 9060 4.736126 TGAAGACATAGGAGATTCGCAA 57.264 40.909 0.00 0.00 0.00 4.85
8679 9075 1.202114 TCGCAAACATCATCAAAGGGC 59.798 47.619 0.00 0.00 0.00 5.19
8683 9079 3.504863 CAAACATCATCAAAGGGCTTCG 58.495 45.455 0.00 0.00 0.00 3.79
8686 9082 0.392998 ATCATCAAAGGGCTTCGCGT 60.393 50.000 5.77 0.00 0.00 6.01
8714 9111 0.876342 CTCGTGATAAAGAGGGCCGC 60.876 60.000 0.00 0.00 0.00 6.53
8719 9116 0.533085 GATAAAGAGGGCCGCAGACC 60.533 60.000 10.70 0.00 0.00 3.85
8733 9130 2.281484 GACCGTGCTGAAGGGCAA 60.281 61.111 0.00 0.00 44.18 4.52
8738 9135 0.109597 CGTGCTGAAGGGCAATGTTC 60.110 55.000 0.00 0.00 44.18 3.18
8740 9137 1.243342 TGCTGAAGGGCAATGTTCCG 61.243 55.000 0.00 0.00 39.43 4.30
8741 9138 1.244019 GCTGAAGGGCAATGTTCCGT 61.244 55.000 0.00 0.00 0.00 4.69
8771 9169 2.360475 GCACCTCCTCTTGGCCAC 60.360 66.667 3.88 0.00 0.00 5.01
8801 9199 4.363999 CCACGGTCATGAATAGAGAGAAC 58.636 47.826 0.00 0.00 0.00 3.01
8806 9204 5.507149 CGGTCATGAATAGAGAGAACTGGAG 60.507 48.000 0.00 0.00 0.00 3.86
8807 9205 5.362430 GGTCATGAATAGAGAGAACTGGAGT 59.638 44.000 0.00 0.00 0.00 3.85
8818 9216 2.359531 AGAACTGGAGTACTATGCGAGC 59.640 50.000 0.00 0.00 0.00 5.03
8828 9226 3.282831 ACTATGCGAGCAAACAAAACC 57.717 42.857 0.57 0.00 0.00 3.27
8834 9232 3.123050 GCGAGCAAACAAAACCTCAAAT 58.877 40.909 0.00 0.00 0.00 2.32
8872 9270 5.222631 CACTATGCAAGGAAACAAAACCTC 58.777 41.667 0.00 0.00 35.25 3.85
8876 9274 4.249661 TGCAAGGAAACAAAACCTCAAAC 58.750 39.130 0.00 0.00 35.25 2.93
8891 9289 2.028130 TCAAACGTTGTTGAAGGGCAT 58.972 42.857 0.00 0.00 34.59 4.40
8892 9290 2.428890 TCAAACGTTGTTGAAGGGCATT 59.571 40.909 0.00 0.00 34.59 3.56
8907 9305 2.827921 GGGCATTGAACTCCAACTTGAT 59.172 45.455 0.00 0.00 37.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.190981 ACGTTGTCTTTGTCGTGTCTC 58.809 47.619 0.00 0.00 35.24 3.36
23 24 2.199236 ACCGAGAACGTTGTCTTTGTC 58.801 47.619 21.47 0.00 37.88 3.18
25 26 2.286184 CCAACCGAGAACGTTGTCTTTG 60.286 50.000 21.47 21.01 37.88 2.77
26 27 1.937899 CCAACCGAGAACGTTGTCTTT 59.062 47.619 21.47 12.35 37.88 2.52
28 29 0.878961 GCCAACCGAGAACGTTGTCT 60.879 55.000 21.47 6.67 37.88 3.41
31 32 2.549282 CGCCAACCGAGAACGTTG 59.451 61.111 5.00 0.00 40.02 4.10
32 33 3.343421 GCGCCAACCGAGAACGTT 61.343 61.111 0.00 0.00 40.02 3.99
53 54 2.751436 TGGAGCCGGCATTGAAGC 60.751 61.111 31.54 8.10 0.00 3.86
69 70 1.201181 CCGAGACAAGACCTCTCACTG 59.799 57.143 0.00 0.00 34.85 3.66
102 103 4.812476 TCCGGAGCGCCAATGTCG 62.812 66.667 7.44 0.00 0.00 4.35
180 181 1.154413 GTTGCCACATTCGCGTCTG 60.154 57.895 5.77 7.60 0.00 3.51
181 182 1.568612 CTGTTGCCACATTCGCGTCT 61.569 55.000 5.77 0.00 30.39 4.18
182 183 1.154413 CTGTTGCCACATTCGCGTC 60.154 57.895 5.77 0.00 30.39 5.19
183 184 2.945984 CTGTTGCCACATTCGCGT 59.054 55.556 5.77 0.00 30.39 6.01
188 189 2.100252 GCATATGAGCTGTTGCCACATT 59.900 45.455 6.97 0.00 40.80 2.71
197 198 2.022195 CTTTGCAGGCATATGAGCTGT 58.978 47.619 6.97 0.00 34.17 4.40
221 222 1.734707 CGAACCGGACGCAAACTAGAT 60.735 52.381 9.46 0.00 0.00 1.98
244 245 5.352569 GGATCAGTTCACATGTTCGAAATCT 59.647 40.000 0.00 0.00 0.00 2.40
264 265 1.004918 CCCTATTGGTCCGCGGATC 60.005 63.158 33.58 32.57 0.00 3.36
265 266 3.148084 CCCTATTGGTCCGCGGAT 58.852 61.111 33.58 18.35 0.00 4.18
284 285 3.456644 TGTTATCCAACATGATACCCCGT 59.543 43.478 0.00 0.00 39.75 5.28
286 287 5.304686 TCTGTTATCCAACATGATACCCC 57.695 43.478 0.00 0.00 43.58 4.95
287 288 6.260936 CAGTTCTGTTATCCAACATGATACCC 59.739 42.308 0.00 0.00 43.58 3.69
288 289 6.823689 ACAGTTCTGTTATCCAACATGATACC 59.176 38.462 0.00 0.00 43.58 2.73
291 292 6.240894 ACACAGTTCTGTTATCCAACATGAT 58.759 36.000 0.00 0.00 43.58 2.45
292 293 5.620206 ACACAGTTCTGTTATCCAACATGA 58.380 37.500 0.00 0.00 43.58 3.07
293 294 5.106555 GGACACAGTTCTGTTATCCAACATG 60.107 44.000 19.76 0.00 43.58 3.21
294 295 5.003804 GGACACAGTTCTGTTATCCAACAT 58.996 41.667 19.76 0.00 43.58 2.71
297 298 3.322541 TCGGACACAGTTCTGTTATCCAA 59.677 43.478 22.27 10.02 0.00 3.53
298 299 2.894765 TCGGACACAGTTCTGTTATCCA 59.105 45.455 22.27 12.82 0.00 3.41
299 300 3.587797 TCGGACACAGTTCTGTTATCC 57.412 47.619 16.83 16.83 0.00 2.59
300 301 4.304110 TGTTCGGACACAGTTCTGTTATC 58.696 43.478 0.00 4.46 0.00 1.75
301 302 4.330944 TGTTCGGACACAGTTCTGTTAT 57.669 40.909 0.00 0.00 0.00 1.89
302 303 3.804786 TGTTCGGACACAGTTCTGTTA 57.195 42.857 0.00 0.00 0.00 2.41
303 304 2.676342 GTTGTTCGGACACAGTTCTGTT 59.324 45.455 0.00 0.00 34.98 3.16
304 305 2.277084 GTTGTTCGGACACAGTTCTGT 58.723 47.619 0.00 0.00 34.98 3.41
305 306 1.597663 GGTTGTTCGGACACAGTTCTG 59.402 52.381 0.00 0.00 34.98 3.02
306 307 1.208535 TGGTTGTTCGGACACAGTTCT 59.791 47.619 0.00 0.00 34.98 3.01
307 308 1.658994 TGGTTGTTCGGACACAGTTC 58.341 50.000 0.00 0.00 34.98 3.01
308 309 2.341846 ATGGTTGTTCGGACACAGTT 57.658 45.000 0.00 0.00 34.98 3.16
309 310 2.341846 AATGGTTGTTCGGACACAGT 57.658 45.000 0.00 0.00 34.98 3.55
310 311 3.708563 AAAATGGTTGTTCGGACACAG 57.291 42.857 0.00 0.00 34.98 3.66
328 329 1.440938 CGCCCTCACACGTCCAAAAA 61.441 55.000 0.00 0.00 0.00 1.94
329 330 1.890041 CGCCCTCACACGTCCAAAA 60.890 57.895 0.00 0.00 0.00 2.44
337 338 1.966451 CCTCCAAACGCCCTCACAC 60.966 63.158 0.00 0.00 0.00 3.82
339 340 2.359975 CCCTCCAAACGCCCTCAC 60.360 66.667 0.00 0.00 0.00 3.51
346 347 1.778027 AAACGCGAACCCTCCAAACG 61.778 55.000 15.93 0.00 0.00 3.60
361 362 7.042335 ACATAATTCTAAGGGAGTCTCAAACG 58.958 38.462 1.47 0.00 0.00 3.60
365 366 9.886132 GTTTTACATAATTCTAAGGGAGTCTCA 57.114 33.333 1.47 0.00 0.00 3.27
392 393 7.833285 TTTAGTGAAAAGGGCAAATCTACTT 57.167 32.000 0.00 0.00 0.00 2.24
457 458 7.610580 TTTGGGTGTGAGAAATAGGATTTTT 57.389 32.000 0.00 0.00 0.00 1.94
458 459 7.797121 ATTTGGGTGTGAGAAATAGGATTTT 57.203 32.000 0.00 0.00 0.00 1.82
459 460 8.893563 TTATTTGGGTGTGAGAAATAGGATTT 57.106 30.769 0.00 0.00 0.00 2.17
460 461 8.893563 TTTATTTGGGTGTGAGAAATAGGATT 57.106 30.769 0.00 0.00 0.00 3.01
461 462 8.336235 TCTTTATTTGGGTGTGAGAAATAGGAT 58.664 33.333 0.00 0.00 0.00 3.24
501 580 5.560966 AAGCTTTTTGTCTCGAGAAACAA 57.439 34.783 18.55 15.81 33.74 2.83
502 581 5.106317 ACAAAGCTTTTTGTCTCGAGAAACA 60.106 36.000 18.55 9.98 40.84 2.83
508 587 4.510340 GGAGTACAAAGCTTTTTGTCTCGA 59.490 41.667 9.53 0.00 43.40 4.04
509 588 4.319549 GGGAGTACAAAGCTTTTTGTCTCG 60.320 45.833 9.53 0.00 43.40 4.04
531 610 8.625786 AAATTGATTTTTGGAGAAAATGGAGG 57.374 30.769 1.82 0.00 31.07 4.30
704 783 2.158900 ACGATGCTCCCTTCATTTCGAT 60.159 45.455 0.00 0.00 0.00 3.59
705 784 1.207089 ACGATGCTCCCTTCATTTCGA 59.793 47.619 0.00 0.00 0.00 3.71
706 785 1.328680 CACGATGCTCCCTTCATTTCG 59.671 52.381 0.00 0.00 0.00 3.46
707 786 2.359900 ACACGATGCTCCCTTCATTTC 58.640 47.619 0.00 0.00 0.00 2.17
708 787 2.496899 ACACGATGCTCCCTTCATTT 57.503 45.000 0.00 0.00 0.00 2.32
709 788 2.496899 AACACGATGCTCCCTTCATT 57.503 45.000 0.00 0.00 0.00 2.57
710 789 2.359900 GAAACACGATGCTCCCTTCAT 58.640 47.619 0.00 0.00 0.00 2.57
711 790 1.808411 GAAACACGATGCTCCCTTCA 58.192 50.000 0.00 0.00 0.00 3.02
712 791 0.721718 CGAAACACGATGCTCCCTTC 59.278 55.000 0.00 0.00 45.77 3.46
713 792 0.320374 TCGAAACACGATGCTCCCTT 59.680 50.000 0.00 0.00 46.45 3.95
714 793 1.972198 TCGAAACACGATGCTCCCT 59.028 52.632 0.00 0.00 46.45 4.20
715 794 4.590487 TCGAAACACGATGCTCCC 57.410 55.556 0.00 0.00 46.45 4.30
737 816 3.181477 TGCTCTTTGTTGAACACATTGGG 60.181 43.478 0.00 0.00 34.43 4.12
742 821 2.163412 GTGGTGCTCTTTGTTGAACACA 59.837 45.455 0.00 0.00 35.46 3.72
743 822 2.163412 TGTGGTGCTCTTTGTTGAACAC 59.837 45.455 0.00 0.00 33.66 3.32
748 827 2.287788 GGACATGTGGTGCTCTTTGTTG 60.288 50.000 1.15 0.00 34.56 3.33
755 834 1.661341 GATCTGGACATGTGGTGCTC 58.339 55.000 1.15 0.00 38.87 4.26
777 856 3.731565 GCACATTGACATTTGCTATGCGA 60.732 43.478 0.00 0.00 33.85 5.10
1187 1277 2.280186 CTACGAGGAATGGGGCGC 60.280 66.667 0.00 0.00 0.00 6.53
1210 1301 3.413558 CGGAAATAACGAGGCGAAAAAG 58.586 45.455 0.00 0.00 0.00 2.27
1228 1319 0.596600 GCTTCGATGAATACGGCGGA 60.597 55.000 13.24 1.23 0.00 5.54
1251 1342 2.755469 TCGCCACCCGGGTAGTAC 60.755 66.667 29.72 14.95 39.65 2.73
1294 1395 6.154192 TGAATAAAATGGCAGCTTGTGGATTA 59.846 34.615 0.00 0.00 0.00 1.75
1302 1403 9.374838 CTAAAAATCTGAATAAAATGGCAGCTT 57.625 29.630 0.00 0.00 0.00 3.74
1335 1436 4.142138 ACAACAAACAAACGGCCTGAATAA 60.142 37.500 0.00 0.00 0.00 1.40
1337 1438 2.167487 ACAACAAACAAACGGCCTGAAT 59.833 40.909 0.00 0.00 0.00 2.57
1338 1439 1.546476 ACAACAAACAAACGGCCTGAA 59.454 42.857 0.00 0.00 0.00 3.02
1349 1450 2.948979 CCTCCTACTGCAACAACAAACA 59.051 45.455 0.00 0.00 0.00 2.83
1350 1451 2.949644 ACCTCCTACTGCAACAACAAAC 59.050 45.455 0.00 0.00 0.00 2.93
1351 1452 3.290948 ACCTCCTACTGCAACAACAAA 57.709 42.857 0.00 0.00 0.00 2.83
1352 1453 3.389983 ACTACCTCCTACTGCAACAACAA 59.610 43.478 0.00 0.00 0.00 2.83
1353 1454 2.969950 ACTACCTCCTACTGCAACAACA 59.030 45.455 0.00 0.00 0.00 3.33
1368 1494 3.305199 GCCGAATTAGCATACGACTACCT 60.305 47.826 0.00 0.00 0.00 3.08
1412 1564 0.172578 TTCTACCGCACGTCCATCTG 59.827 55.000 0.00 0.00 0.00 2.90
1428 1600 3.715495 CAATAGCAGCGAGATCAGTTCT 58.285 45.455 0.00 0.00 37.41 3.01
1484 1656 2.430921 CTGCGTGTGGGTCTCGAC 60.431 66.667 0.00 0.00 35.42 4.20
1548 1720 9.905171 GCTATTTCAATTTGAAGAAGAGAAACT 57.095 29.630 19.21 0.00 37.70 2.66
1615 1787 3.112263 CCCCAGATCCTACACCAAAGTA 58.888 50.000 0.00 0.00 0.00 2.24
1618 1790 1.203505 TCCCCCAGATCCTACACCAAA 60.204 52.381 0.00 0.00 0.00 3.28
1650 1822 0.318191 ATCCTCGTCGTCATGATGCG 60.318 55.000 19.28 19.28 33.35 4.73
1714 1886 4.202172 TGAGTTAACACAACCTCATCGTCA 60.202 41.667 8.61 0.00 0.00 4.35
1891 2063 8.557029 ACTTGAATTAGCTACACTTGTTTGTAC 58.443 33.333 0.00 0.00 0.00 2.90
1950 2123 3.475566 TGCTGACACCTAGCCATATTC 57.524 47.619 0.00 0.00 40.42 1.75
1982 2155 3.985008 ACACAACATACTACGCAACTCA 58.015 40.909 0.00 0.00 0.00 3.41
1989 2162 6.471839 CCGGAAAATTACACAACATACTACG 58.528 40.000 0.00 0.00 0.00 3.51
1990 2163 6.128227 TGCCGGAAAATTACACAACATACTAC 60.128 38.462 5.05 0.00 0.00 2.73
1992 2165 4.762765 TGCCGGAAAATTACACAACATACT 59.237 37.500 5.05 0.00 0.00 2.12
1997 2170 4.113354 TGTTTGCCGGAAAATTACACAAC 58.887 39.130 11.76 0.00 0.00 3.32
2015 2188 6.808212 GCATATTCATTAAGTGTGTGCTGTTT 59.192 34.615 0.00 0.00 0.00 2.83
2067 2240 4.025480 CGTTAAGTGCGTATTATTCCCCAC 60.025 45.833 0.00 0.00 0.00 4.61
2068 2241 4.121317 CGTTAAGTGCGTATTATTCCCCA 58.879 43.478 0.00 0.00 0.00 4.96
2069 2242 4.370917 TCGTTAAGTGCGTATTATTCCCC 58.629 43.478 0.00 0.00 0.00 4.81
2070 2243 5.971895 TTCGTTAAGTGCGTATTATTCCC 57.028 39.130 0.00 0.00 0.00 3.97
2081 2254 8.813643 ACTATTACTCCATATTCGTTAAGTGC 57.186 34.615 0.00 0.00 0.00 4.40
2104 2284 7.382488 CGTTGCATATGCTCTTAATGTACTACT 59.618 37.037 27.13 0.00 42.66 2.57
2108 2288 6.355638 GTCGTTGCATATGCTCTTAATGTAC 58.644 40.000 27.13 13.79 42.66 2.90
2111 2291 4.512944 AGGTCGTTGCATATGCTCTTAATG 59.487 41.667 27.13 17.76 42.66 1.90
2126 2306 6.430451 GCAATATTAATCTGGAAGGTCGTTG 58.570 40.000 0.00 0.00 0.00 4.10
2127 2307 5.236478 CGCAATATTAATCTGGAAGGTCGTT 59.764 40.000 0.00 0.00 0.00 3.85
2129 2309 4.377431 GCGCAATATTAATCTGGAAGGTCG 60.377 45.833 0.30 0.00 0.00 4.79
2150 2330 7.787725 ATTACATAACCTTTCCTTTCTAGCG 57.212 36.000 0.00 0.00 0.00 4.26
2163 2343 9.326413 CCGTGAAGAATAAGAATTACATAACCT 57.674 33.333 0.00 0.00 30.46 3.50
2164 2344 9.106070 ACCGTGAAGAATAAGAATTACATAACC 57.894 33.333 0.00 0.00 30.46 2.85
2220 2400 9.565213 CAAATTTCTAAAAGCCTATCTGTTCTG 57.435 33.333 0.00 0.00 0.00 3.02
2376 2563 2.520549 AGGAGTCCAGAGGTAGCCTAAT 59.479 50.000 12.86 0.00 31.76 1.73
2439 2626 6.238184 GGTGCAAAAATAAATCCAGCTAATGC 60.238 38.462 0.00 0.00 40.05 3.56
2556 2743 7.461182 AAATACCAATCGGAATGAAGAACAA 57.539 32.000 0.00 0.00 35.59 2.83
2599 2786 1.873591 CTCCACTTGAGTTTGAACCGG 59.126 52.381 0.00 0.00 36.27 5.28
2621 2808 5.810095 AGGGTTATTATAGCTGCTCCATTC 58.190 41.667 4.91 0.00 0.00 2.67
2643 2830 6.823689 AGTAACCCAACTACTGCAAATATGAG 59.176 38.462 0.00 0.00 0.00 2.90
2762 2949 5.311649 ACATGTAAAGGGCATCCTATCATCT 59.688 40.000 0.00 0.00 44.07 2.90
2763 2950 5.564550 ACATGTAAAGGGCATCCTATCATC 58.435 41.667 0.00 0.00 44.07 2.92
2772 2961 6.471146 TGCATTTAAAACATGTAAAGGGCAT 58.529 32.000 13.46 0.00 33.43 4.40
2788 2977 9.431887 ACGAGATTACTTCTAAGTTGCATTTAA 57.568 29.630 0.00 0.00 40.37 1.52
2955 3152 8.184192 CGAAAGCCAACTAAAATCACAAGATAT 58.816 33.333 0.00 0.00 33.08 1.63
2968 3165 1.133730 ACCAACCCGAAAGCCAACTAA 60.134 47.619 0.00 0.00 0.00 2.24
2970 3167 1.106944 CACCAACCCGAAAGCCAACT 61.107 55.000 0.00 0.00 0.00 3.16
2976 3173 3.207778 TGTAAGAACACCAACCCGAAAG 58.792 45.455 0.00 0.00 0.00 2.62
2982 3179 4.982295 GCTTTTCATGTAAGAACACCAACC 59.018 41.667 12.47 0.00 38.78 3.77
3011 3216 9.034800 TGACAATCCTTTAGGCAATTAAGAAAT 57.965 29.630 0.00 0.00 34.44 2.17
3056 3261 6.151648 CAGCCCACAGATAAAATGGTATATGG 59.848 42.308 0.00 0.00 28.84 2.74
3061 3266 3.287222 GCAGCCCACAGATAAAATGGTA 58.713 45.455 0.00 0.00 0.00 3.25
3063 3268 1.066002 CGCAGCCCACAGATAAAATGG 59.934 52.381 0.00 0.00 0.00 3.16
3084 3289 4.766891 ACATAAAGTGACACCATTGAAGGG 59.233 41.667 0.84 0.00 0.00 3.95
3106 3311 7.117812 ACATTAGTTGTGTGAGTATGCACTAAC 59.882 37.037 0.00 0.00 39.49 2.34
3136 3341 5.668558 AGTTACCGACATGAGTTCAAAAC 57.331 39.130 0.00 0.00 0.00 2.43
3148 3353 4.859304 ACATTGTGACTAGTTACCGACA 57.141 40.909 14.62 2.61 0.00 4.35
3151 3356 7.117236 ACATGTAAACATTGTGACTAGTTACCG 59.883 37.037 14.62 6.41 33.61 4.02
3202 3407 9.464714 TTTAGACATCTTCGAAGTATAATCAGC 57.535 33.333 23.85 6.26 0.00 4.26
3215 3420 5.302059 TGAGGTAGGGATTTAGACATCTTCG 59.698 44.000 0.00 0.00 0.00 3.79
3230 3435 6.261435 TGGTATACCAAGATATGAGGTAGGG 58.739 44.000 22.59 0.00 44.35 3.53
3321 3528 6.516739 TGAGACAGTCAACCAGAGTATTAG 57.483 41.667 2.66 0.00 29.64 1.73
3355 3562 9.263538 TGAATTTCCTTCATGAACAAATTTGAG 57.736 29.630 24.64 9.21 38.97 3.02
3407 3614 3.303351 AGTTTCCCCATGAATGCTAGG 57.697 47.619 0.00 0.00 31.67 3.02
3410 3617 5.361857 CAGATAAAGTTTCCCCATGAATGCT 59.638 40.000 0.00 0.00 31.67 3.79
3426 3633 8.150945 ACATACTGTAGCCATAACCAGATAAAG 58.849 37.037 0.00 0.00 0.00 1.85
3438 3645 5.189736 TGGAAAGAGAACATACTGTAGCCAT 59.810 40.000 0.00 0.00 0.00 4.40
3571 3778 9.019656 ACATGTTAATAGGCAGAAATAACAACA 57.980 29.630 0.00 0.00 39.21 3.33
3572 3779 9.855021 AACATGTTAATAGGCAGAAATAACAAC 57.145 29.630 9.97 0.00 39.21 3.32
3604 3811 3.314541 ACGATGTGGGACTACAACTTC 57.685 47.619 0.00 0.00 33.69 3.01
3613 3820 6.317893 ACAAGGAATTAATTACGATGTGGGAC 59.682 38.462 18.48 0.00 28.76 4.46
3636 3843 9.778741 AGCAAAAGCTAATATGCTATAACTACA 57.221 29.630 12.17 0.00 46.61 2.74
3651 3858 4.019792 TGATGACAGGAGCAAAAGCTAA 57.980 40.909 0.00 0.00 0.00 3.09
3674 3881 6.590292 CGTGTCATGAGTTAAATAGGTCTGTT 59.410 38.462 0.00 0.00 0.00 3.16
3678 3901 5.867716 ACACGTGTCATGAGTTAAATAGGTC 59.132 40.000 17.22 0.00 0.00 3.85
3698 3921 5.013568 TGGGTACAATAGACCATTACACG 57.986 43.478 0.00 0.00 38.86 4.49
3724 3948 6.484288 TCCATGAAAAGCTCCAGAAGAAATA 58.516 36.000 0.00 0.00 0.00 1.40
3765 3989 1.002468 CACTGCACTCAACCCTTTTCG 60.002 52.381 0.00 0.00 0.00 3.46
3776 4000 4.094887 TCAAACTTCAAAGACACTGCACTC 59.905 41.667 0.00 0.00 0.00 3.51
3779 4003 5.384063 TTTCAAACTTCAAAGACACTGCA 57.616 34.783 0.00 0.00 0.00 4.41
3791 4015 8.871686 ACCACACAGAATATTTTTCAAACTTC 57.128 30.769 0.00 0.00 0.00 3.01
3804 4028 8.204160 CCTGACTAATAATGACCACACAGAATA 58.796 37.037 0.00 0.00 0.00 1.75
3807 4031 5.104941 CCCTGACTAATAATGACCACACAGA 60.105 44.000 0.00 0.00 0.00 3.41
3808 4032 5.118990 CCCTGACTAATAATGACCACACAG 58.881 45.833 0.00 0.00 0.00 3.66
3810 4034 5.099042 ACCCTGACTAATAATGACCACAC 57.901 43.478 0.00 0.00 0.00 3.82
3815 4039 8.421784 TCACAATCTACCCTGACTAATAATGAC 58.578 37.037 0.00 0.00 0.00 3.06
3816 4040 8.421784 GTCACAATCTACCCTGACTAATAATGA 58.578 37.037 0.00 0.00 31.99 2.57
3817 4041 8.204160 TGTCACAATCTACCCTGACTAATAATG 58.796 37.037 0.00 0.00 35.14 1.90
3818 4042 8.319057 TGTCACAATCTACCCTGACTAATAAT 57.681 34.615 0.00 0.00 35.14 1.28
3819 4043 7.727578 TGTCACAATCTACCCTGACTAATAA 57.272 36.000 0.00 0.00 35.14 1.40
3820 4044 7.914427 ATGTCACAATCTACCCTGACTAATA 57.086 36.000 0.00 0.00 35.14 0.98
3841 4065 6.319658 AGAAATTCAGTTCTGACACACAATGT 59.680 34.615 1.72 0.00 36.48 2.71
3842 4066 6.732154 AGAAATTCAGTTCTGACACACAATG 58.268 36.000 1.72 0.00 36.48 2.82
3843 4067 6.016777 GGAGAAATTCAGTTCTGACACACAAT 60.017 38.462 1.72 0.00 37.98 2.71
3844 4068 5.296780 GGAGAAATTCAGTTCTGACACACAA 59.703 40.000 1.72 0.00 37.98 3.33
3845 4069 4.816385 GGAGAAATTCAGTTCTGACACACA 59.184 41.667 1.72 0.00 37.98 3.72
3847 4071 5.034852 TGGAGAAATTCAGTTCTGACACA 57.965 39.130 1.72 0.00 37.98 3.72
3848 4072 6.876257 ACTATGGAGAAATTCAGTTCTGACAC 59.124 38.462 1.72 0.00 37.98 3.67
3849 4073 7.009179 ACTATGGAGAAATTCAGTTCTGACA 57.991 36.000 1.72 0.00 37.98 3.58
3850 4074 9.039870 CATACTATGGAGAAATTCAGTTCTGAC 57.960 37.037 1.72 0.00 37.98 3.51
3851 4075 8.981659 TCATACTATGGAGAAATTCAGTTCTGA 58.018 33.333 0.00 0.00 37.98 3.27
3852 4076 9.775854 ATCATACTATGGAGAAATTCAGTTCTG 57.224 33.333 0.00 0.00 37.98 3.02
3854 4078 8.502387 GCATCATACTATGGAGAAATTCAGTTC 58.498 37.037 0.00 0.00 0.00 3.01
3855 4079 7.994911 TGCATCATACTATGGAGAAATTCAGTT 59.005 33.333 0.00 0.00 0.00 3.16
3856 4080 7.512130 TGCATCATACTATGGAGAAATTCAGT 58.488 34.615 0.00 0.00 0.00 3.41
3857 4081 7.974482 TGCATCATACTATGGAGAAATTCAG 57.026 36.000 0.00 0.00 0.00 3.02
3858 4082 8.750515 TTTGCATCATACTATGGAGAAATTCA 57.249 30.769 0.00 0.00 0.00 2.57
3859 4083 9.060347 TCTTTGCATCATACTATGGAGAAATTC 57.940 33.333 0.00 0.00 0.00 2.17
3860 4084 8.985315 TCTTTGCATCATACTATGGAGAAATT 57.015 30.769 0.00 0.00 0.00 1.82
3861 4085 7.664731 CCTCTTTGCATCATACTATGGAGAAAT 59.335 37.037 0.00 0.00 0.00 2.17
3862 4086 6.994496 CCTCTTTGCATCATACTATGGAGAAA 59.006 38.462 0.00 0.00 0.00 2.52
3863 4087 6.100279 ACCTCTTTGCATCATACTATGGAGAA 59.900 38.462 0.00 0.00 0.00 2.87
3864 4088 5.604231 ACCTCTTTGCATCATACTATGGAGA 59.396 40.000 0.00 0.00 0.00 3.71
3865 4089 5.862845 ACCTCTTTGCATCATACTATGGAG 58.137 41.667 0.00 0.00 0.00 3.86
3885 4109 3.458487 GGTGGTATCCATTTAGGTGACCT 59.542 47.826 10.00 10.00 41.21 3.85
3905 4129 2.721425 TTCGAAAAAGTCCACAGGGT 57.279 45.000 0.00 0.00 34.93 4.34
3912 4136 6.072452 AGGTGAAGATGAATTCGAAAAAGTCC 60.072 38.462 0.00 0.00 31.52 3.85
3935 4159 5.230942 ACACAAAGTAGAAGATCGTGAAGG 58.769 41.667 0.00 0.00 0.00 3.46
3936 4160 6.420903 TCAACACAAAGTAGAAGATCGTGAAG 59.579 38.462 0.00 0.00 0.00 3.02
3937 4161 6.277605 TCAACACAAAGTAGAAGATCGTGAA 58.722 36.000 0.00 0.00 0.00 3.18
3938 4162 5.838529 TCAACACAAAGTAGAAGATCGTGA 58.161 37.500 0.00 0.00 0.00 4.35
3939 4163 6.712241 ATCAACACAAAGTAGAAGATCGTG 57.288 37.500 0.00 0.00 0.00 4.35
3940 4164 6.706270 ACAATCAACACAAAGTAGAAGATCGT 59.294 34.615 0.00 0.00 0.00 3.73
3941 4165 7.121974 ACAATCAACACAAAGTAGAAGATCG 57.878 36.000 0.00 0.00 0.00 3.69
3952 4176 8.849168 AGACAAGATCATTACAATCAACACAAA 58.151 29.630 0.00 0.00 0.00 2.83
3955 4179 8.032952 TCAGACAAGATCATTACAATCAACAC 57.967 34.615 0.00 0.00 0.00 3.32
3962 4186 8.853077 AGTTGATTCAGACAAGATCATTACAA 57.147 30.769 0.00 0.00 0.00 2.41
3991 4217 4.023792 CACTCAGCTCTGCAACAAATTGTA 60.024 41.667 0.00 0.00 38.17 2.41
3996 4222 2.042686 ACACTCAGCTCTGCAACAAA 57.957 45.000 0.00 0.00 0.00 2.83
4046 4272 9.391006 CTATACCTGTTATGTAAAAGAAAGCCA 57.609 33.333 0.00 0.00 0.00 4.75
4067 4293 5.487845 ACCCATAACTATTGAGGCCCTATAC 59.512 44.000 0.00 0.00 0.00 1.47
4297 4523 2.281498 GCCTTTGCGTTTTCTCAACAAC 59.719 45.455 0.00 0.00 0.00 3.32
4300 4526 2.492019 AGCCTTTGCGTTTTCTCAAC 57.508 45.000 0.00 0.00 44.33 3.18
4301 4527 2.808244 CAAGCCTTTGCGTTTTCTCAA 58.192 42.857 0.00 0.00 44.33 3.02
4374 4605 8.909923 TGAGTTATGTAACTGATCCTCGATTAA 58.090 33.333 9.98 0.00 45.84 1.40
4394 4626 0.973632 ATGGGACGTGCACTGAGTTA 59.026 50.000 16.19 0.00 0.00 2.24
4396 4628 1.004560 CATGGGACGTGCACTGAGT 60.005 57.895 16.19 5.31 0.00 3.41
4641 4873 0.558220 TTCCCAACCATGAACCCACA 59.442 50.000 0.00 0.00 0.00 4.17
4650 4882 2.828549 GCGCCGATTCCCAACCAT 60.829 61.111 0.00 0.00 0.00 3.55
4727 4959 1.899437 AACGATCCGGCACCTCATGT 61.899 55.000 0.00 0.00 0.00 3.21
4827 5059 1.474077 CATTGGCTTGCTAACCTGGAC 59.526 52.381 0.00 0.00 0.00 4.02
5174 5406 3.664025 CTCAATGGGCGCTCGGTCA 62.664 63.158 7.64 0.00 0.00 4.02
5480 5713 2.998670 CAGCAGCTCGAGAAGATTCAAA 59.001 45.455 18.75 0.00 0.00 2.69
5563 5796 1.166531 GGGCTTGCACTCGTCAAGTT 61.167 55.000 0.00 0.00 42.06 2.66
5574 5807 2.053865 GCTTGCATAGGGGCTTGCA 61.054 57.895 0.00 0.00 46.51 4.08
5575 5808 2.789715 GGCTTGCATAGGGGCTTGC 61.790 63.158 0.00 0.00 39.33 4.01
5576 5809 1.076485 AGGCTTGCATAGGGGCTTG 60.076 57.895 0.00 0.00 31.87 4.01
5577 5810 1.076485 CAGGCTTGCATAGGGGCTT 60.076 57.895 0.00 0.00 33.62 4.35
5578 5811 2.599597 CAGGCTTGCATAGGGGCT 59.400 61.111 0.00 0.00 36.29 5.19
5729 5962 3.785859 GCCTGGGATGCTCGACCA 61.786 66.667 0.00 0.00 0.00 4.02
5736 5969 1.527844 GATCACCAGCCTGGGATGC 60.528 63.158 16.70 5.97 43.37 3.91
5794 6027 1.344763 AGTGAACTACGCCAAGAGCTT 59.655 47.619 0.00 0.00 40.39 3.74
5862 6095 0.527817 CCACGGAGAGCGACATAACC 60.528 60.000 0.00 0.00 0.00 2.85
5894 6127 1.985447 ATACGCCGACGACGTCATGT 61.985 55.000 26.26 21.21 43.88 3.21
6009 6242 0.179094 CCCCGCAGTTATTCGTGCTA 60.179 55.000 0.00 0.00 37.55 3.49
6047 6280 2.116125 GGCACAAGGAAGGGCTGT 59.884 61.111 0.00 0.00 0.00 4.40
6139 6372 1.814169 GGTTCGGTCATCGCTTCCC 60.814 63.158 0.00 0.00 39.05 3.97
6163 6396 1.630244 CTCTTTGAGGTTCTGCGCCG 61.630 60.000 4.18 0.00 0.00 6.46
6408 6642 2.519771 ACCGCCCGATATACCTCATA 57.480 50.000 0.00 0.00 0.00 2.15
6415 6649 1.730501 CGAGACTACCGCCCGATATA 58.269 55.000 0.00 0.00 0.00 0.86
6470 6706 0.398318 ACTCAACCAGGCACTTCTCC 59.602 55.000 0.00 0.00 34.60 3.71
6515 6751 2.928801 TGTGTTCCAGCAGCTCTTTA 57.071 45.000 0.00 0.00 0.00 1.85
6567 6803 3.202706 GCCGAATTCCTCCGTGCC 61.203 66.667 0.00 0.00 0.00 5.01
6606 6842 2.046892 CTACCTGCGCACAAGGCT 60.047 61.111 5.66 0.16 41.67 4.58
6618 6854 4.695560 GCAGTGAAACGCCTACCT 57.304 55.556 0.00 0.00 45.86 3.08
6660 6896 1.307355 TATCCGACCTTGACGCGACA 61.307 55.000 15.93 11.23 0.00 4.35
6662 6898 0.745486 TCTATCCGACCTTGACGCGA 60.745 55.000 15.93 0.00 0.00 5.87
6678 6914 2.095869 GCTTATCGACGGAAGCGATCTA 60.096 50.000 16.17 0.00 44.65 1.98
6861 7098 1.377725 CAGCACGGCCTTCTTCCAT 60.378 57.895 0.00 0.00 0.00 3.41
7020 7257 3.244976 GCTTATTGCGTGCTTTGACAAT 58.755 40.909 0.00 0.00 36.70 2.71
7088 7325 4.557296 GCAGTTCACTACACATGCAAATGT 60.557 41.667 10.68 10.68 33.92 2.71
7101 7338 9.665719 TCATAATTCAACTTATGCAGTTCACTA 57.334 29.630 0.00 0.00 44.60 2.74
7184 7421 8.450578 TTCACACAATTAACTGAGACAGAATT 57.549 30.769 5.76 0.25 35.18 2.17
7195 7432 9.840427 GTGTAAAGCATATTCACACAATTAACT 57.160 29.630 0.00 0.00 39.39 2.24
7360 7599 4.323104 GCCCTTGTTCAGTACTTCTCATCT 60.323 45.833 0.00 0.00 0.00 2.90
7388 7627 5.339990 CAATAATACCAAAAGGGCTTCACG 58.660 41.667 0.00 0.00 42.05 4.35
7636 7879 6.485830 ACATATAGTCCACACTGCACTATT 57.514 37.500 0.00 0.00 35.43 1.73
7637 7880 6.090483 GACATATAGTCCACACTGCACTAT 57.910 41.667 0.00 0.00 41.56 2.12
7748 7991 3.088532 GTTTGTCCCATGGATGTGCTTA 58.911 45.455 15.22 0.00 32.73 3.09
7796 8039 5.070580 GCCCCACAGTCTAAGATAGTAATGT 59.929 44.000 0.00 0.00 0.00 2.71
7977 8220 4.326255 TCCGAACGGGAGGAGTAC 57.674 61.111 13.29 0.00 40.94 2.73
7984 8227 2.671914 CGACAAGTAATTCCGAACGGGA 60.672 50.000 13.29 4.89 45.40 5.14
7985 8228 1.657094 CGACAAGTAATTCCGAACGGG 59.343 52.381 13.29 0.00 35.59 5.28
7986 8229 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
7987 8230 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
7988 8231 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
7989 8232 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
7990 8233 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
7991 8234 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
7992 8235 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
7993 8236 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
7994 8237 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
7995 8238 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
7996 8239 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
7997 8240 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
7998 8241 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
7999 8242 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
8000 8243 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
8001 8244 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
8002 8245 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
8003 8246 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
8004 8247 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
8005 8248 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
8031 8274 9.173021 ACGAAAATGGATGTATCATGAACTAAA 57.827 29.630 0.00 0.00 0.00 1.85
8032 8275 8.611757 CACGAAAATGGATGTATCATGAACTAA 58.388 33.333 0.00 0.00 0.00 2.24
8033 8276 7.984617 TCACGAAAATGGATGTATCATGAACTA 59.015 33.333 0.00 0.00 0.00 2.24
8034 8277 6.823182 TCACGAAAATGGATGTATCATGAACT 59.177 34.615 0.00 0.00 0.00 3.01
8035 8278 6.907212 GTCACGAAAATGGATGTATCATGAAC 59.093 38.462 0.00 0.12 0.00 3.18
8036 8279 6.597280 TGTCACGAAAATGGATGTATCATGAA 59.403 34.615 0.00 0.00 0.00 2.57
8037 8280 6.112058 TGTCACGAAAATGGATGTATCATGA 58.888 36.000 0.00 0.00 0.00 3.07
8038 8281 6.362210 TGTCACGAAAATGGATGTATCATG 57.638 37.500 0.00 0.00 0.00 3.07
8039 8282 6.599244 ACTTGTCACGAAAATGGATGTATCAT 59.401 34.615 0.00 0.00 0.00 2.45
8040 8283 5.937540 ACTTGTCACGAAAATGGATGTATCA 59.062 36.000 0.00 0.00 0.00 2.15
8041 8284 6.422776 ACTTGTCACGAAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
8042 8285 7.915293 TTACTTGTCACGAAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
8043 8286 7.915293 ATTACTTGTCACGAAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
8044 8287 6.817765 ATTACTTGTCACGAAAATGGATGT 57.182 33.333 0.00 0.00 0.00 3.06
8045 8288 6.747280 GGAATTACTTGTCACGAAAATGGATG 59.253 38.462 0.00 0.00 0.00 3.51
8046 8289 6.403200 CGGAATTACTTGTCACGAAAATGGAT 60.403 38.462 0.00 0.00 0.00 3.41
8047 8290 5.106869 CGGAATTACTTGTCACGAAAATGGA 60.107 40.000 0.00 0.00 0.00 3.41
8048 8291 5.086058 CGGAATTACTTGTCACGAAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
8049 8292 5.922546 TCGGAATTACTTGTCACGAAAATG 58.077 37.500 0.00 0.00 0.00 2.32
8050 8293 6.368213 GTTCGGAATTACTTGTCACGAAAAT 58.632 36.000 0.00 0.00 39.99 1.82
8051 8294 5.556758 CGTTCGGAATTACTTGTCACGAAAA 60.557 40.000 0.00 0.00 39.99 2.29
8052 8295 4.084952 CGTTCGGAATTACTTGTCACGAAA 60.085 41.667 0.00 0.00 39.99 3.46
8053 8296 3.426191 CGTTCGGAATTACTTGTCACGAA 59.574 43.478 0.00 0.00 36.65 3.85
8054 8297 2.981805 CGTTCGGAATTACTTGTCACGA 59.018 45.455 0.00 0.00 0.00 4.35
8055 8298 2.091588 CCGTTCGGAATTACTTGTCACG 59.908 50.000 5.19 0.00 0.00 4.35
8056 8299 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
8057 8300 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
8058 8301 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
8059 8302 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
8060 8303 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
8061 8304 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
8062 8305 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
8063 8306 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
8064 8307 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
8065 8308 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
8066 8309 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
8067 8310 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
8068 8311 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
8069 8312 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
8070 8313 1.390565 ACATCTACTCCCTCCGTTCG 58.609 55.000 0.00 0.00 0.00 3.95
8071 8314 3.194968 TCAAACATCTACTCCCTCCGTTC 59.805 47.826 0.00 0.00 0.00 3.95
8072 8315 3.170717 TCAAACATCTACTCCCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
8073 8316 2.761208 CTCAAACATCTACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
8074 8317 2.482142 GCTCAAACATCTACTCCCTCCG 60.482 54.545 0.00 0.00 0.00 4.63
8075 8318 2.158885 GGCTCAAACATCTACTCCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
8076 8319 2.769095 AGGCTCAAACATCTACTCCCTC 59.231 50.000 0.00 0.00 0.00 4.30
8077 8320 2.839228 AGGCTCAAACATCTACTCCCT 58.161 47.619 0.00 0.00 0.00 4.20
8078 8321 3.055094 TGAAGGCTCAAACATCTACTCCC 60.055 47.826 0.00 0.00 0.00 4.30
8079 8322 4.187694 CTGAAGGCTCAAACATCTACTCC 58.812 47.826 0.00 0.00 0.00 3.85
8080 8323 3.620821 GCTGAAGGCTCAAACATCTACTC 59.379 47.826 0.00 0.00 38.06 2.59
8081 8324 3.008375 TGCTGAAGGCTCAAACATCTACT 59.992 43.478 0.00 0.00 42.39 2.57
8373 8769 8.562052 CCTTCTTTCTTTCCAAAATGAAAATGG 58.438 33.333 0.00 0.00 37.79 3.16
8377 8773 5.752955 CGCCTTCTTTCTTTCCAAAATGAAA 59.247 36.000 0.00 0.00 36.64 2.69
8406 8802 0.863144 TTTCTGTAGCCGTTGCGTTC 59.137 50.000 0.00 0.00 44.33 3.95
8420 8816 1.160137 GTGCCAGGTGCTACTTTCTG 58.840 55.000 0.00 0.00 42.00 3.02
8442 8838 6.361768 ACTTCTTCCCTGTAACTTCTTAGG 57.638 41.667 0.00 0.00 0.00 2.69
8444 8840 7.243824 TCCTACTTCTTCCCTGTAACTTCTTA 58.756 38.462 0.00 0.00 0.00 2.10
8491 8887 1.026182 TCGTGGTGATGATTGCCTGC 61.026 55.000 0.00 0.00 0.00 4.85
8522 8918 0.743688 CTCAGTCTGCCTAGTGCGAT 59.256 55.000 0.00 0.00 45.60 4.58
8525 8921 1.548269 ACTTCTCAGTCTGCCTAGTGC 59.452 52.381 0.00 0.00 41.77 4.40
8555 8951 7.393234 TCTCCTTTCGACAAATCCAACAATATT 59.607 33.333 0.00 0.00 0.00 1.28
8584 8980 1.604278 CTCTACATCATCTCGGCGTCA 59.396 52.381 6.85 0.00 0.00 4.35
8606 9002 1.740285 AACGCAGACGGTGACTTCT 59.260 52.632 0.00 0.00 46.04 2.85
8613 9009 1.163420 TGATTTGCAACGCAGACGGT 61.163 50.000 0.00 0.00 46.04 4.83
8614 9010 0.725784 GTGATTTGCAACGCAGACGG 60.726 55.000 0.00 0.00 46.04 4.79
8615 9011 0.235665 AGTGATTTGCAACGCAGACG 59.764 50.000 0.00 0.00 40.61 4.18
8616 9012 1.722751 CGAGTGATTTGCAACGCAGAC 60.723 52.381 0.00 0.00 40.61 3.51
8617 9013 0.512518 CGAGTGATTTGCAACGCAGA 59.487 50.000 0.00 0.00 40.61 4.26
8618 9014 0.453282 CCGAGTGATTTGCAACGCAG 60.453 55.000 0.00 0.00 40.61 5.18
8619 9015 1.573932 CCGAGTGATTTGCAACGCA 59.426 52.632 0.00 0.00 36.47 5.24
8620 9016 1.797537 GCCGAGTGATTTGCAACGC 60.798 57.895 0.00 0.00 0.00 4.84
8621 9017 0.725784 GTGCCGAGTGATTTGCAACG 60.726 55.000 0.00 0.00 35.16 4.10
8622 9018 0.387239 GGTGCCGAGTGATTTGCAAC 60.387 55.000 0.00 0.00 35.16 4.17
8623 9019 0.537143 AGGTGCCGAGTGATTTGCAA 60.537 50.000 0.00 0.00 35.16 4.08
8624 9020 0.537143 AAGGTGCCGAGTGATTTGCA 60.537 50.000 0.00 0.00 0.00 4.08
8625 9021 0.109597 CAAGGTGCCGAGTGATTTGC 60.110 55.000 0.00 0.00 0.00 3.68
8626 9022 1.522668 TCAAGGTGCCGAGTGATTTG 58.477 50.000 0.00 0.00 0.00 2.32
8627 9023 2.154462 CTTCAAGGTGCCGAGTGATTT 58.846 47.619 0.00 0.00 0.00 2.17
8628 9024 1.347707 TCTTCAAGGTGCCGAGTGATT 59.652 47.619 0.00 0.00 0.00 2.57
8633 9029 2.544685 CTATGTCTTCAAGGTGCCGAG 58.455 52.381 0.00 0.00 0.00 4.63
8641 9037 4.686972 TGCGAATCTCCTATGTCTTCAAG 58.313 43.478 0.00 0.00 0.00 3.02
8651 9047 5.022282 TGATGATGTTTGCGAATCTCCTA 57.978 39.130 0.00 0.00 0.00 2.94
8654 9050 5.032863 CCTTTGATGATGTTTGCGAATCTC 58.967 41.667 0.00 0.00 0.00 2.75
8658 9054 2.352617 GCCCTTTGATGATGTTTGCGAA 60.353 45.455 0.00 0.00 0.00 4.70
8679 9075 4.194720 AGGCTAGGCGACGCGAAG 62.195 66.667 15.93 14.18 0.00 3.79
8686 9082 1.337071 CTTTATCACGAGGCTAGGCGA 59.663 52.381 11.10 2.19 0.00 5.54
8698 9094 0.178068 TCTGCGGCCCTCTTTATCAC 59.822 55.000 0.00 0.00 0.00 3.06
8714 9111 2.743928 GCCCTTCAGCACGGTCTG 60.744 66.667 0.37 0.37 35.46 3.51
8719 9116 0.109597 GAACATTGCCCTTCAGCACG 60.110 55.000 0.00 0.00 43.97 5.34
8723 9120 1.068333 CAACGGAACATTGCCCTTCAG 60.068 52.381 0.00 0.00 0.00 3.02
8733 9130 3.535561 CAAGGCTATCTCAACGGAACAT 58.464 45.455 0.00 0.00 0.00 2.71
8738 9135 1.009829 GTGCAAGGCTATCTCAACGG 58.990 55.000 0.00 0.00 0.00 4.44
8740 9137 2.284190 GAGGTGCAAGGCTATCTCAAC 58.716 52.381 0.00 0.00 0.00 3.18
8741 9138 1.210478 GGAGGTGCAAGGCTATCTCAA 59.790 52.381 0.00 0.00 0.00 3.02
8771 9169 4.735132 ATGACCGTGGCCGTCGTG 62.735 66.667 16.69 11.43 0.00 4.35
8784 9182 6.463995 ACTCCAGTTCTCTCTATTCATGAC 57.536 41.667 0.00 0.00 0.00 3.06
8801 9199 2.860735 GTTTGCTCGCATAGTACTCCAG 59.139 50.000 0.00 0.00 0.00 3.86
8806 9204 4.083484 AGGTTTTGTTTGCTCGCATAGTAC 60.083 41.667 0.00 0.00 0.00 2.73
8807 9205 4.069304 AGGTTTTGTTTGCTCGCATAGTA 58.931 39.130 0.00 0.00 0.00 1.82
8818 9216 7.862873 GGTTCTCTCTATTTGAGGTTTTGTTTG 59.137 37.037 0.00 0.00 42.86 2.93
8828 9226 3.131223 TGCTCCGGTTCTCTCTATTTGAG 59.869 47.826 0.00 0.00 43.96 3.02
8834 9232 3.215151 CATAGTGCTCCGGTTCTCTCTA 58.785 50.000 0.00 0.78 0.00 2.43
8845 9243 2.436417 TGTTTCCTTGCATAGTGCTCC 58.564 47.619 3.41 0.00 45.31 4.70
8857 9255 4.794278 ACGTTTGAGGTTTTGTTTCCTT 57.206 36.364 0.00 0.00 33.83 3.36
8872 9270 2.507339 ATGCCCTTCAACAACGTTTG 57.493 45.000 0.00 0.00 0.00 2.93
8876 9274 2.034558 AGTTCAATGCCCTTCAACAACG 59.965 45.455 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.