Multiple sequence alignment - TraesCS3D01G148300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G148300 chr3D 100.000 3533 0 0 1 3533 113451527 113455059 0.000000e+00 6525
1 TraesCS3D01G148300 chr3D 95.860 628 22 4 2909 3533 612020071 612019445 0.000000e+00 1013
2 TraesCS3D01G148300 chr3D 95.290 637 28 2 2898 3533 597183194 597182559 0.000000e+00 1009
3 TraesCS3D01G148300 chr3D 95.439 285 12 1 1372 1656 113202054 113202337 1.500000e-123 453
4 TraesCS3D01G148300 chr3D 90.870 230 21 0 1154 1383 113184252 113184481 3.430000e-80 309
5 TraesCS3D01G148300 chr3B 93.728 2296 74 18 564 2813 167734955 167732684 0.000000e+00 3378
6 TraesCS3D01G148300 chr3A 90.516 2130 111 44 460 2546 108744402 108746483 0.000000e+00 2730
7 TraesCS3D01G148300 chr3A 88.285 239 13 8 2628 2861 108746524 108746752 4.490000e-69 272
8 TraesCS3D01G148300 chr3A 84.663 163 16 6 243 403 108744225 108744380 1.700000e-33 154
9 TraesCS3D01G148300 chr4B 85.734 1479 200 10 1038 2512 672958324 672956853 0.000000e+00 1552
10 TraesCS3D01G148300 chrUn 85.334 1466 206 7 1035 2497 99242038 99243497 0.000000e+00 1507
11 TraesCS3D01G148300 chrUn 96.038 631 24 1 2903 3533 45207431 45208060 0.000000e+00 1026
12 TraesCS3D01G148300 chr7B 84.889 1436 191 16 1078 2512 16158025 16156615 0.000000e+00 1426
13 TraesCS3D01G148300 chr7B 84.940 1421 188 16 1078 2497 13307147 13308542 0.000000e+00 1415
14 TraesCS3D01G148300 chr4D 96.051 633 23 2 2902 3533 35124715 35124084 0.000000e+00 1029
15 TraesCS3D01G148300 chr4D 95.741 634 26 1 2900 3533 364026902 364026270 0.000000e+00 1020
16 TraesCS3D01G148300 chr1D 96.332 627 20 3 2909 3533 463249906 463250531 0.000000e+00 1027
17 TraesCS3D01G148300 chr7D 95.680 625 26 1 2909 3533 43790354 43789731 0.000000e+00 1003
18 TraesCS3D01G148300 chr6D 95.253 632 28 2 2903 3533 449814433 449815063 0.000000e+00 1000
19 TraesCS3D01G148300 chr5D 95.390 629 27 2 2906 3533 510945254 510945881 0.000000e+00 1000
20 TraesCS3D01G148300 chr5A 87.209 430 54 1 2083 2512 708166876 708167304 4.100000e-134 488


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G148300 chr3D 113451527 113455059 3532 False 6525 6525 100.000000 1 3533 1 chr3D.!!$F3 3532
1 TraesCS3D01G148300 chr3D 612019445 612020071 626 True 1013 1013 95.860000 2909 3533 1 chr3D.!!$R2 624
2 TraesCS3D01G148300 chr3D 597182559 597183194 635 True 1009 1009 95.290000 2898 3533 1 chr3D.!!$R1 635
3 TraesCS3D01G148300 chr3B 167732684 167734955 2271 True 3378 3378 93.728000 564 2813 1 chr3B.!!$R1 2249
4 TraesCS3D01G148300 chr3A 108744225 108746752 2527 False 1052 2730 87.821333 243 2861 3 chr3A.!!$F1 2618
5 TraesCS3D01G148300 chr4B 672956853 672958324 1471 True 1552 1552 85.734000 1038 2512 1 chr4B.!!$R1 1474
6 TraesCS3D01G148300 chrUn 99242038 99243497 1459 False 1507 1507 85.334000 1035 2497 1 chrUn.!!$F2 1462
7 TraesCS3D01G148300 chrUn 45207431 45208060 629 False 1026 1026 96.038000 2903 3533 1 chrUn.!!$F1 630
8 TraesCS3D01G148300 chr7B 16156615 16158025 1410 True 1426 1426 84.889000 1078 2512 1 chr7B.!!$R1 1434
9 TraesCS3D01G148300 chr7B 13307147 13308542 1395 False 1415 1415 84.940000 1078 2497 1 chr7B.!!$F1 1419
10 TraesCS3D01G148300 chr4D 35124084 35124715 631 True 1029 1029 96.051000 2902 3533 1 chr4D.!!$R1 631
11 TraesCS3D01G148300 chr4D 364026270 364026902 632 True 1020 1020 95.741000 2900 3533 1 chr4D.!!$R2 633
12 TraesCS3D01G148300 chr1D 463249906 463250531 625 False 1027 1027 96.332000 2909 3533 1 chr1D.!!$F1 624
13 TraesCS3D01G148300 chr7D 43789731 43790354 623 True 1003 1003 95.680000 2909 3533 1 chr7D.!!$R1 624
14 TraesCS3D01G148300 chr6D 449814433 449815063 630 False 1000 1000 95.253000 2903 3533 1 chr6D.!!$F1 630
15 TraesCS3D01G148300 chr5D 510945254 510945881 627 False 1000 1000 95.390000 2906 3533 1 chr5D.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.037326 AGCACGAACACATCCGACAT 60.037 50.000 0.00 0.00 0.0 3.06 F
495 498 0.319125 GAAACATTCCGGCGGCAAAA 60.319 50.000 23.83 11.54 0.0 2.44 F
855 903 1.002011 GTTCCCACTCCAGCCTTCC 60.002 63.158 0.00 0.00 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 1977 0.899019 GGAAGTCGAAGAGGAAGCCT 59.101 55.000 0.0 0.0 36.95 4.58 R
2271 2346 2.881352 CGCGCCTCCGAGAAGAAC 60.881 66.667 0.0 0.0 36.29 3.01 R
2573 2658 0.699399 AGGACGAGAGACAGAGGGAA 59.301 55.000 0.0 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.922740 TTTGAACTAGTTGGACGCCT 57.077 45.000 14.14 0.00 0.00 5.52
20 21 2.163818 TTGAACTAGTTGGACGCCTG 57.836 50.000 14.14 0.00 0.00 4.85
21 22 1.334160 TGAACTAGTTGGACGCCTGA 58.666 50.000 14.14 0.00 0.00 3.86
22 23 1.000506 TGAACTAGTTGGACGCCTGAC 59.999 52.381 14.14 0.00 0.00 3.51
23 24 1.272769 GAACTAGTTGGACGCCTGACT 59.727 52.381 14.14 9.16 0.00 3.41
24 25 0.889306 ACTAGTTGGACGCCTGACTC 59.111 55.000 0.00 0.00 0.00 3.36
25 26 0.179161 CTAGTTGGACGCCTGACTCG 60.179 60.000 8.06 0.00 0.00 4.18
26 27 0.607217 TAGTTGGACGCCTGACTCGA 60.607 55.000 8.06 0.00 0.00 4.04
27 28 1.006571 GTTGGACGCCTGACTCGAA 60.007 57.895 0.00 0.00 0.00 3.71
28 29 0.599204 GTTGGACGCCTGACTCGAAA 60.599 55.000 0.00 0.00 0.00 3.46
29 30 0.105224 TTGGACGCCTGACTCGAAAA 59.895 50.000 0.00 0.00 0.00 2.29
30 31 0.320374 TGGACGCCTGACTCGAAAAT 59.680 50.000 0.00 0.00 0.00 1.82
31 32 1.546923 TGGACGCCTGACTCGAAAATA 59.453 47.619 0.00 0.00 0.00 1.40
32 33 1.925185 GGACGCCTGACTCGAAAATAC 59.075 52.381 0.00 0.00 0.00 1.89
33 34 1.925185 GACGCCTGACTCGAAAATACC 59.075 52.381 0.00 0.00 0.00 2.73
34 35 1.287425 CGCCTGACTCGAAAATACCC 58.713 55.000 0.00 0.00 0.00 3.69
35 36 1.287425 GCCTGACTCGAAAATACCCG 58.713 55.000 0.00 0.00 0.00 5.28
36 37 1.287425 CCTGACTCGAAAATACCCGC 58.713 55.000 0.00 0.00 0.00 6.13
37 38 1.134788 CCTGACTCGAAAATACCCGCT 60.135 52.381 0.00 0.00 0.00 5.52
38 39 2.194271 CTGACTCGAAAATACCCGCTC 58.806 52.381 0.00 0.00 0.00 5.03
39 40 1.546923 TGACTCGAAAATACCCGCTCA 59.453 47.619 0.00 0.00 0.00 4.26
40 41 2.028839 TGACTCGAAAATACCCGCTCAA 60.029 45.455 0.00 0.00 0.00 3.02
41 42 3.195661 GACTCGAAAATACCCGCTCAAT 58.804 45.455 0.00 0.00 0.00 2.57
42 43 3.195661 ACTCGAAAATACCCGCTCAATC 58.804 45.455 0.00 0.00 0.00 2.67
43 44 2.198406 TCGAAAATACCCGCTCAATCG 58.802 47.619 0.00 0.00 0.00 3.34
44 45 1.332904 CGAAAATACCCGCTCAATCGC 60.333 52.381 0.00 0.00 0.00 4.58
45 46 1.002792 GAAAATACCCGCTCAATCGCC 60.003 52.381 0.00 0.00 0.00 5.54
46 47 0.107410 AAATACCCGCTCAATCGCCA 60.107 50.000 0.00 0.00 0.00 5.69
47 48 0.108585 AATACCCGCTCAATCGCCAT 59.891 50.000 0.00 0.00 0.00 4.40
48 49 0.108585 ATACCCGCTCAATCGCCATT 59.891 50.000 0.00 0.00 0.00 3.16
49 50 0.107410 TACCCGCTCAATCGCCATTT 60.107 50.000 0.00 0.00 0.00 2.32
50 51 0.965363 ACCCGCTCAATCGCCATTTT 60.965 50.000 0.00 0.00 0.00 1.82
51 52 1.021202 CCCGCTCAATCGCCATTTTA 58.979 50.000 0.00 0.00 0.00 1.52
52 53 1.002468 CCCGCTCAATCGCCATTTTAG 60.002 52.381 0.00 0.00 0.00 1.85
53 54 1.670811 CCGCTCAATCGCCATTTTAGT 59.329 47.619 0.00 0.00 0.00 2.24
54 55 2.869801 CCGCTCAATCGCCATTTTAGTA 59.130 45.455 0.00 0.00 0.00 1.82
55 56 3.303132 CCGCTCAATCGCCATTTTAGTAC 60.303 47.826 0.00 0.00 0.00 2.73
56 57 3.601586 CGCTCAATCGCCATTTTAGTACG 60.602 47.826 0.00 0.00 0.00 3.67
57 58 3.308866 GCTCAATCGCCATTTTAGTACGT 59.691 43.478 0.00 0.00 0.00 3.57
58 59 4.782195 GCTCAATCGCCATTTTAGTACGTG 60.782 45.833 0.00 0.00 0.00 4.49
59 60 4.247258 TCAATCGCCATTTTAGTACGTGT 58.753 39.130 0.00 0.00 0.00 4.49
60 61 4.327898 TCAATCGCCATTTTAGTACGTGTC 59.672 41.667 0.00 0.00 0.00 3.67
61 62 2.252747 TCGCCATTTTAGTACGTGTCG 58.747 47.619 0.00 0.00 0.00 4.35
62 63 1.987770 CGCCATTTTAGTACGTGTCGT 59.012 47.619 0.00 0.00 44.35 4.34
63 64 2.409378 CGCCATTTTAGTACGTGTCGTT 59.591 45.455 0.00 0.00 41.54 3.85
64 65 3.480825 CGCCATTTTAGTACGTGTCGTTC 60.481 47.826 0.00 0.00 41.54 3.95
65 66 3.429543 GCCATTTTAGTACGTGTCGTTCA 59.570 43.478 0.00 0.00 41.54 3.18
66 67 4.092383 GCCATTTTAGTACGTGTCGTTCAT 59.908 41.667 0.00 0.00 41.54 2.57
67 68 5.289193 GCCATTTTAGTACGTGTCGTTCATA 59.711 40.000 0.00 0.00 41.54 2.15
68 69 6.507456 GCCATTTTAGTACGTGTCGTTCATAG 60.507 42.308 0.00 0.00 41.54 2.23
69 70 6.748658 CCATTTTAGTACGTGTCGTTCATAGA 59.251 38.462 0.00 0.00 41.54 1.98
70 71 7.044249 CCATTTTAGTACGTGTCGTTCATAGAG 60.044 40.741 0.00 0.00 41.54 2.43
71 72 6.486253 TTTAGTACGTGTCGTTCATAGAGT 57.514 37.500 0.00 0.00 41.54 3.24
72 73 6.486253 TTAGTACGTGTCGTTCATAGAGTT 57.514 37.500 0.00 0.00 41.54 3.01
73 74 4.967437 AGTACGTGTCGTTCATAGAGTTC 58.033 43.478 0.00 0.00 41.54 3.01
74 75 3.909776 ACGTGTCGTTCATAGAGTTCA 57.090 42.857 0.00 0.00 36.35 3.18
75 76 3.562505 ACGTGTCGTTCATAGAGTTCAC 58.437 45.455 0.00 0.00 36.35 3.18
76 77 2.588539 CGTGTCGTTCATAGAGTTCACG 59.411 50.000 0.00 0.00 40.50 4.35
77 78 3.666111 CGTGTCGTTCATAGAGTTCACGA 60.666 47.826 8.33 0.00 46.26 4.35
80 81 4.696899 TCGTTCATAGAGTTCACGACAT 57.303 40.909 0.00 0.00 35.05 3.06
81 82 5.055642 TCGTTCATAGAGTTCACGACATT 57.944 39.130 0.00 0.00 35.05 2.71
82 83 4.857037 TCGTTCATAGAGTTCACGACATTG 59.143 41.667 0.00 0.00 35.05 2.82
83 84 4.490959 CGTTCATAGAGTTCACGACATTGC 60.491 45.833 0.00 0.00 32.51 3.56
84 85 4.456280 TCATAGAGTTCACGACATTGCT 57.544 40.909 0.00 0.00 0.00 3.91
85 86 4.176271 TCATAGAGTTCACGACATTGCTG 58.824 43.478 0.00 0.00 0.00 4.41
86 87 2.533266 AGAGTTCACGACATTGCTGT 57.467 45.000 0.00 0.00 38.67 4.40
87 88 3.660501 AGAGTTCACGACATTGCTGTA 57.339 42.857 0.00 0.00 35.14 2.74
88 89 3.990092 AGAGTTCACGACATTGCTGTAA 58.010 40.909 0.00 0.00 35.14 2.41
89 90 4.377021 AGAGTTCACGACATTGCTGTAAA 58.623 39.130 0.00 0.00 35.14 2.01
90 91 4.449068 AGAGTTCACGACATTGCTGTAAAG 59.551 41.667 0.00 0.00 35.14 1.85
91 92 4.377021 AGTTCACGACATTGCTGTAAAGA 58.623 39.130 0.00 0.00 35.14 2.52
92 93 4.997395 AGTTCACGACATTGCTGTAAAGAT 59.003 37.500 0.00 0.00 35.14 2.40
93 94 6.163476 AGTTCACGACATTGCTGTAAAGATA 58.837 36.000 0.00 0.00 35.14 1.98
94 95 6.311445 AGTTCACGACATTGCTGTAAAGATAG 59.689 38.462 0.00 0.00 35.14 2.08
95 96 5.961272 TCACGACATTGCTGTAAAGATAGA 58.039 37.500 0.00 0.00 35.14 1.98
96 97 5.805486 TCACGACATTGCTGTAAAGATAGAC 59.195 40.000 0.00 0.00 35.14 2.59
97 98 5.005779 CACGACATTGCTGTAAAGATAGACC 59.994 44.000 0.00 0.00 35.14 3.85
98 99 5.109210 CGACATTGCTGTAAAGATAGACCA 58.891 41.667 0.00 0.00 35.14 4.02
99 100 5.233050 CGACATTGCTGTAAAGATAGACCAG 59.767 44.000 0.00 0.00 35.14 4.00
100 101 6.299805 ACATTGCTGTAAAGATAGACCAGA 57.700 37.500 0.00 0.00 32.49 3.86
101 102 6.711277 ACATTGCTGTAAAGATAGACCAGAA 58.289 36.000 0.00 0.00 32.49 3.02
102 103 7.341805 ACATTGCTGTAAAGATAGACCAGAAT 58.658 34.615 0.00 0.00 32.49 2.40
103 104 8.486210 ACATTGCTGTAAAGATAGACCAGAATA 58.514 33.333 0.00 0.00 32.49 1.75
104 105 9.330063 CATTGCTGTAAAGATAGACCAGAATAA 57.670 33.333 0.00 0.00 0.00 1.40
105 106 8.948631 TTGCTGTAAAGATAGACCAGAATAAG 57.051 34.615 0.00 0.00 0.00 1.73
106 107 6.986817 TGCTGTAAAGATAGACCAGAATAAGC 59.013 38.462 0.00 0.00 0.00 3.09
107 108 6.144724 GCTGTAAAGATAGACCAGAATAAGCG 59.855 42.308 0.00 0.00 0.00 4.68
108 109 6.513180 TGTAAAGATAGACCAGAATAAGCGG 58.487 40.000 0.00 0.00 0.00 5.52
109 110 5.871396 AAAGATAGACCAGAATAAGCGGA 57.129 39.130 0.00 0.00 0.00 5.54
110 111 6.426646 AAAGATAGACCAGAATAAGCGGAT 57.573 37.500 0.00 0.00 0.00 4.18
111 112 6.426646 AAGATAGACCAGAATAAGCGGATT 57.573 37.500 0.00 0.00 0.00 3.01
112 113 6.426646 AGATAGACCAGAATAAGCGGATTT 57.573 37.500 0.00 0.00 0.00 2.17
113 114 6.831976 AGATAGACCAGAATAAGCGGATTTT 58.168 36.000 0.00 0.00 0.00 1.82
114 115 7.963532 AGATAGACCAGAATAAGCGGATTTTA 58.036 34.615 0.00 0.00 0.00 1.52
115 116 8.429641 AGATAGACCAGAATAAGCGGATTTTAA 58.570 33.333 0.00 0.00 0.00 1.52
116 117 6.927294 AGACCAGAATAAGCGGATTTTAAG 57.073 37.500 0.00 0.00 0.00 1.85
117 118 5.823045 AGACCAGAATAAGCGGATTTTAAGG 59.177 40.000 0.00 0.00 0.00 2.69
118 119 5.751586 ACCAGAATAAGCGGATTTTAAGGA 58.248 37.500 0.00 0.00 0.00 3.36
119 120 6.365520 ACCAGAATAAGCGGATTTTAAGGAT 58.634 36.000 0.00 0.00 0.00 3.24
120 121 6.263168 ACCAGAATAAGCGGATTTTAAGGATG 59.737 38.462 0.00 0.00 0.00 3.51
121 122 6.145535 CAGAATAAGCGGATTTTAAGGATGC 58.854 40.000 0.00 0.00 0.00 3.91
122 123 5.827797 AGAATAAGCGGATTTTAAGGATGCA 59.172 36.000 0.00 0.00 0.00 3.96
123 124 3.782889 AAGCGGATTTTAAGGATGCAC 57.217 42.857 0.00 0.00 0.00 4.57
124 125 2.722094 AGCGGATTTTAAGGATGCACA 58.278 42.857 0.00 0.00 0.00 4.57
125 126 2.684881 AGCGGATTTTAAGGATGCACAG 59.315 45.455 0.00 0.00 0.00 3.66
126 127 2.796032 GCGGATTTTAAGGATGCACAGC 60.796 50.000 0.00 0.00 0.00 4.40
127 128 2.223572 CGGATTTTAAGGATGCACAGCC 60.224 50.000 0.00 0.00 37.08 4.85
128 129 2.223572 GGATTTTAAGGATGCACAGCCG 60.224 50.000 0.00 0.00 42.82 5.52
129 130 0.525761 TTTTAAGGATGCACAGCCGC 59.474 50.000 0.00 0.00 42.82 6.53
130 131 0.322456 TTTAAGGATGCACAGCCGCT 60.322 50.000 0.00 0.00 42.82 5.52
131 132 1.026182 TTAAGGATGCACAGCCGCTG 61.026 55.000 19.08 19.08 42.82 5.18
132 133 2.874648 TAAGGATGCACAGCCGCTGG 62.875 60.000 24.03 13.79 42.82 4.85
134 135 3.807538 GATGCACAGCCGCTGGTG 61.808 66.667 24.03 18.74 45.50 4.17
138 139 4.694233 CACAGCCGCTGGTGCTCT 62.694 66.667 24.03 0.00 43.84 4.09
139 140 3.946201 ACAGCCGCTGGTGCTCTT 61.946 61.111 24.03 0.00 43.84 2.85
140 141 2.670934 CAGCCGCTGGTGCTCTTT 60.671 61.111 12.93 0.00 36.81 2.52
141 142 2.359230 AGCCGCTGGTGCTCTTTC 60.359 61.111 0.00 0.00 32.41 2.62
142 143 2.669569 GCCGCTGGTGCTCTTTCA 60.670 61.111 0.00 0.00 36.97 2.69
143 144 2.260869 GCCGCTGGTGCTCTTTCAA 61.261 57.895 0.00 0.00 36.97 2.69
144 145 1.589716 GCCGCTGGTGCTCTTTCAAT 61.590 55.000 0.00 0.00 36.97 2.57
145 146 0.449388 CCGCTGGTGCTCTTTCAATC 59.551 55.000 0.00 0.00 36.97 2.67
146 147 1.159285 CGCTGGTGCTCTTTCAATCA 58.841 50.000 0.00 0.00 36.97 2.57
147 148 1.741706 CGCTGGTGCTCTTTCAATCAT 59.258 47.619 0.00 0.00 36.97 2.45
148 149 2.938451 CGCTGGTGCTCTTTCAATCATA 59.062 45.455 0.00 0.00 36.97 2.15
149 150 3.242543 CGCTGGTGCTCTTTCAATCATAC 60.243 47.826 0.00 0.00 36.97 2.39
150 151 3.242543 GCTGGTGCTCTTTCAATCATACG 60.243 47.826 0.00 0.00 36.03 3.06
151 152 3.935203 CTGGTGCTCTTTCAATCATACGT 59.065 43.478 0.00 0.00 0.00 3.57
152 153 5.079689 TGGTGCTCTTTCAATCATACGTA 57.920 39.130 0.00 0.00 0.00 3.57
153 154 5.670485 TGGTGCTCTTTCAATCATACGTAT 58.330 37.500 1.14 1.14 0.00 3.06
154 155 5.523552 TGGTGCTCTTTCAATCATACGTATG 59.476 40.000 26.35 26.35 35.04 2.39
155 156 5.523916 GGTGCTCTTTCAATCATACGTATGT 59.476 40.000 29.56 17.20 35.26 2.29
156 157 6.292381 GGTGCTCTTTCAATCATACGTATGTC 60.292 42.308 29.56 11.18 35.26 3.06
157 158 5.753438 TGCTCTTTCAATCATACGTATGTCC 59.247 40.000 29.56 11.05 35.26 4.02
158 159 5.107837 GCTCTTTCAATCATACGTATGTCCG 60.108 44.000 29.56 19.94 35.26 4.79
159 160 5.286438 TCTTTCAATCATACGTATGTCCGG 58.714 41.667 29.56 19.16 35.26 5.14
160 161 3.021269 TCAATCATACGTATGTCCGGC 57.979 47.619 29.56 0.00 35.26 6.13
161 162 2.066262 CAATCATACGTATGTCCGGCC 58.934 52.381 29.56 0.00 35.26 6.13
162 163 0.242825 ATCATACGTATGTCCGGCCG 59.757 55.000 29.56 21.04 35.26 6.13
163 164 1.372499 CATACGTATGTCCGGCCGG 60.372 63.158 39.13 39.13 0.00 6.13
164 165 1.529010 ATACGTATGTCCGGCCGGA 60.529 57.895 42.66 42.66 42.90 5.14
174 175 2.178912 TCCGGCCGGATTTAATCATC 57.821 50.000 42.66 0.00 39.76 2.92
175 176 1.418264 TCCGGCCGGATTTAATCATCA 59.582 47.619 42.66 16.84 39.76 3.07
176 177 2.039746 TCCGGCCGGATTTAATCATCAT 59.960 45.455 42.66 0.00 39.76 2.45
177 178 3.262151 TCCGGCCGGATTTAATCATCATA 59.738 43.478 42.66 16.10 39.76 2.15
178 179 4.080582 TCCGGCCGGATTTAATCATCATAT 60.081 41.667 42.66 0.00 39.76 1.78
179 180 4.035558 CCGGCCGGATTTAATCATCATATG 59.964 45.833 41.82 4.35 37.50 1.78
180 181 4.635765 CGGCCGGATTTAATCATCATATGT 59.364 41.667 20.10 0.00 0.00 2.29
181 182 5.447683 CGGCCGGATTTAATCATCATATGTG 60.448 44.000 20.10 1.04 0.00 3.21
182 183 5.647658 GGCCGGATTTAATCATCATATGTGA 59.352 40.000 5.05 6.54 39.04 3.58
183 184 6.150976 GGCCGGATTTAATCATCATATGTGAA 59.849 38.462 5.05 0.00 38.01 3.18
184 185 7.148018 GGCCGGATTTAATCATCATATGTGAAT 60.148 37.037 5.05 2.44 38.01 2.57
185 186 8.246180 GCCGGATTTAATCATCATATGTGAATT 58.754 33.333 5.05 3.98 38.01 2.17
186 187 9.563898 CCGGATTTAATCATCATATGTGAATTG 57.436 33.333 7.29 0.00 38.01 2.32
198 199 9.859427 ATCATATGTGAATTGTTCGAATTTTGT 57.141 25.926 0.00 0.00 38.01 2.83
199 200 9.340695 TCATATGTGAATTGTTCGAATTTTGTC 57.659 29.630 0.00 0.00 0.00 3.18
200 201 9.127006 CATATGTGAATTGTTCGAATTTTGTCA 57.873 29.630 0.00 0.00 0.00 3.58
201 202 9.859427 ATATGTGAATTGTTCGAATTTTGTCAT 57.141 25.926 0.00 4.75 0.00 3.06
202 203 7.392234 TGTGAATTGTTCGAATTTTGTCATG 57.608 32.000 0.00 0.00 0.00 3.07
203 204 6.074409 TGTGAATTGTTCGAATTTTGTCATGC 60.074 34.615 0.00 0.00 0.00 4.06
204 205 5.116831 TGAATTGTTCGAATTTTGTCATGCG 59.883 36.000 0.00 0.00 0.00 4.73
205 206 2.315011 TGTTCGAATTTTGTCATGCGC 58.685 42.857 0.00 0.00 0.00 6.09
206 207 2.287248 TGTTCGAATTTTGTCATGCGCA 60.287 40.909 14.96 14.96 0.00 6.09
207 208 2.916716 GTTCGAATTTTGTCATGCGCAT 59.083 40.909 19.28 19.28 0.00 4.73
208 209 4.094911 GTTCGAATTTTGTCATGCGCATA 58.905 39.130 24.84 6.66 0.00 3.14
209 210 3.939088 TCGAATTTTGTCATGCGCATAG 58.061 40.909 24.84 17.19 0.00 2.23
221 222 3.786955 CGCATAGCACGAACACATC 57.213 52.632 0.00 0.00 0.00 3.06
222 223 0.301687 CGCATAGCACGAACACATCC 59.698 55.000 0.00 0.00 0.00 3.51
223 224 0.301687 GCATAGCACGAACACATCCG 59.698 55.000 0.00 0.00 0.00 4.18
224 225 1.921243 CATAGCACGAACACATCCGA 58.079 50.000 0.00 0.00 0.00 4.55
225 226 1.588404 CATAGCACGAACACATCCGAC 59.412 52.381 0.00 0.00 0.00 4.79
226 227 0.599060 TAGCACGAACACATCCGACA 59.401 50.000 0.00 0.00 0.00 4.35
227 228 0.037326 AGCACGAACACATCCGACAT 60.037 50.000 0.00 0.00 0.00 3.06
228 229 1.203758 AGCACGAACACATCCGACATA 59.796 47.619 0.00 0.00 0.00 2.29
229 230 1.588404 GCACGAACACATCCGACATAG 59.412 52.381 0.00 0.00 0.00 2.23
230 231 2.193447 CACGAACACATCCGACATAGG 58.807 52.381 0.00 0.00 0.00 2.57
231 232 2.097036 ACGAACACATCCGACATAGGA 58.903 47.619 0.00 0.00 45.54 2.94
261 262 1.981256 ATTCCCACAACACACAGGAC 58.019 50.000 0.00 0.00 0.00 3.85
279 282 8.890718 ACACAGGACTTAAAAAGAACTTTCTAC 58.109 33.333 0.21 0.00 36.28 2.59
293 296 8.341892 AGAACTTTCTACAAAATTCTCATCCC 57.658 34.615 0.00 0.00 35.34 3.85
299 302 7.257790 TCTACAAAATTCTCATCCCTCAGAA 57.742 36.000 0.00 0.00 33.18 3.02
316 319 5.711976 CCTCAGAATTTGTACACCATTCCTT 59.288 40.000 17.74 4.14 0.00 3.36
335 338 1.320507 TGCTGTGCTTGCTGAATGAA 58.679 45.000 0.00 0.00 0.00 2.57
344 347 4.082625 TGCTTGCTGAATGAATGTAACAGG 60.083 41.667 0.00 0.00 0.00 4.00
345 348 4.156556 GCTTGCTGAATGAATGTAACAGGA 59.843 41.667 0.00 0.00 0.00 3.86
346 349 5.335897 GCTTGCTGAATGAATGTAACAGGAA 60.336 40.000 0.00 0.00 36.80 3.36
347 350 5.627499 TGCTGAATGAATGTAACAGGAAC 57.373 39.130 0.00 0.00 0.00 3.62
348 351 5.069318 TGCTGAATGAATGTAACAGGAACA 58.931 37.500 0.00 0.00 0.00 3.18
349 352 5.181811 TGCTGAATGAATGTAACAGGAACAG 59.818 40.000 0.00 0.00 0.00 3.16
354 357 2.200373 ATGTAACAGGAACAGGGTGC 57.800 50.000 0.00 0.00 0.00 5.01
390 393 1.266175 GCTCCCATGATTCGATGCAAG 59.734 52.381 0.00 0.00 0.00 4.01
392 395 2.547211 CTCCCATGATTCGATGCAAGAC 59.453 50.000 0.00 0.00 0.00 3.01
395 398 3.129113 CCCATGATTCGATGCAAGACAAA 59.871 43.478 0.00 0.00 0.00 2.83
396 399 4.100529 CCATGATTCGATGCAAGACAAAC 58.899 43.478 0.00 0.00 0.00 2.93
403 406 4.597079 TCGATGCAAGACAAACAGAAAAC 58.403 39.130 0.00 0.00 0.00 2.43
405 408 4.977963 CGATGCAAGACAAACAGAAAACAT 59.022 37.500 0.00 0.00 0.00 2.71
406 409 5.459762 CGATGCAAGACAAACAGAAAACATT 59.540 36.000 0.00 0.00 0.00 2.71
407 410 6.019640 CGATGCAAGACAAACAGAAAACATTT 60.020 34.615 0.00 0.00 0.00 2.32
408 411 6.645700 TGCAAGACAAACAGAAAACATTTC 57.354 33.333 0.00 0.00 0.00 2.17
409 412 6.397272 TGCAAGACAAACAGAAAACATTTCT 58.603 32.000 0.00 0.00 0.00 2.52
411 414 8.196771 TGCAAGACAAACAGAAAACATTTCTAT 58.803 29.630 5.12 0.00 0.00 1.98
412 415 8.694394 GCAAGACAAACAGAAAACATTTCTATC 58.306 33.333 5.12 0.55 0.00 2.08
440 443 9.836076 AAAAATTATCCTTACAGTTTTCTACGC 57.164 29.630 0.00 0.00 0.00 4.42
441 444 7.549615 AATTATCCTTACAGTTTTCTACGCC 57.450 36.000 0.00 0.00 0.00 5.68
442 445 4.546829 ATCCTTACAGTTTTCTACGCCA 57.453 40.909 0.00 0.00 0.00 5.69
443 446 4.546829 TCCTTACAGTTTTCTACGCCAT 57.453 40.909 0.00 0.00 0.00 4.40
444 447 4.901868 TCCTTACAGTTTTCTACGCCATT 58.098 39.130 0.00 0.00 0.00 3.16
445 448 4.933400 TCCTTACAGTTTTCTACGCCATTC 59.067 41.667 0.00 0.00 0.00 2.67
446 449 4.094442 CCTTACAGTTTTCTACGCCATTCC 59.906 45.833 0.00 0.00 0.00 3.01
447 450 3.418684 ACAGTTTTCTACGCCATTCCT 57.581 42.857 0.00 0.00 0.00 3.36
448 451 3.074412 ACAGTTTTCTACGCCATTCCTG 58.926 45.455 0.00 0.00 0.00 3.86
449 452 3.074412 CAGTTTTCTACGCCATTCCTGT 58.926 45.455 0.00 0.00 0.00 4.00
450 453 4.250464 CAGTTTTCTACGCCATTCCTGTA 58.750 43.478 0.00 0.00 0.00 2.74
451 454 4.693566 CAGTTTTCTACGCCATTCCTGTAA 59.306 41.667 0.00 0.00 0.00 2.41
452 455 5.180492 CAGTTTTCTACGCCATTCCTGTAAA 59.820 40.000 0.00 0.00 0.00 2.01
453 456 5.180680 AGTTTTCTACGCCATTCCTGTAAAC 59.819 40.000 0.00 0.00 0.00 2.01
454 457 3.965379 TCTACGCCATTCCTGTAAACA 57.035 42.857 0.00 0.00 0.00 2.83
455 458 3.592059 TCTACGCCATTCCTGTAAACAC 58.408 45.455 0.00 0.00 0.00 3.32
456 459 1.530323 ACGCCATTCCTGTAAACACC 58.470 50.000 0.00 0.00 0.00 4.16
457 460 0.446222 CGCCATTCCTGTAAACACCG 59.554 55.000 0.00 0.00 0.00 4.94
458 461 1.530323 GCCATTCCTGTAAACACCGT 58.470 50.000 0.00 0.00 0.00 4.83
468 471 4.390909 CCTGTAAACACCGTGAGTAATTCC 59.609 45.833 5.28 0.00 0.00 3.01
495 498 0.319125 GAAACATTCCGGCGGCAAAA 60.319 50.000 23.83 11.54 0.00 2.44
499 502 2.635443 ATTCCGGCGGCAAAACAGG 61.635 57.895 23.83 0.06 0.00 4.00
607 617 1.202651 CCAACCTGGGATCATCGTACC 60.203 57.143 0.00 0.00 32.67 3.34
608 618 1.762957 CAACCTGGGATCATCGTACCT 59.237 52.381 0.00 0.00 0.00 3.08
759 793 3.419580 ATGAGCCAATCCGCCCCA 61.420 61.111 0.00 0.00 0.00 4.96
849 897 2.347490 CACCGGTTCCCACTCCAG 59.653 66.667 2.97 0.00 0.00 3.86
855 903 1.002011 GTTCCCACTCCAGCCTTCC 60.002 63.158 0.00 0.00 0.00 3.46
863 911 1.616628 TCCAGCCTTCCTCCCTTCC 60.617 63.158 0.00 0.00 0.00 3.46
864 912 2.684499 CCAGCCTTCCTCCCTTCCC 61.684 68.421 0.00 0.00 0.00 3.97
872 920 3.093172 CTCCCTTCCCCTCCCTGC 61.093 72.222 0.00 0.00 0.00 4.85
873 921 4.760220 TCCCTTCCCCTCCCTGCC 62.760 72.222 0.00 0.00 0.00 4.85
925 977 7.014230 CCCCGATAGACCAATTCAATACAATTT 59.986 37.037 0.00 0.00 39.76 1.82
936 988 9.993881 CAATTCAATACAATTTTCGTGTTCTTC 57.006 29.630 0.00 0.00 0.00 2.87
966 1018 2.296365 CCAGGGAGAGCTTGAGCCA 61.296 63.158 0.00 0.00 43.38 4.75
967 1019 1.221293 CAGGGAGAGCTTGAGCCAG 59.779 63.158 0.00 0.00 43.38 4.85
968 1020 2.124778 GGGAGAGCTTGAGCCAGC 60.125 66.667 0.00 0.00 43.38 4.85
971 1043 1.519013 GAGAGCTTGAGCCAGCGAG 60.519 63.158 0.00 0.00 45.24 5.03
1902 1977 1.577922 CGACGACGAGGAGTTTGGA 59.422 57.895 0.00 0.00 42.66 3.53
2081 2156 1.342819 CGAGAAGATCCAGGGGATGAC 59.657 57.143 1.79 0.00 43.27 3.06
2409 2484 4.059459 GCGCTGTTCGTGACCGTG 62.059 66.667 0.00 0.00 41.07 4.94
2542 2617 2.564553 ATCGTTCTGAGCTGGTCCGC 62.565 60.000 4.17 0.00 0.00 5.54
2565 2650 3.920093 CTTGTCCCCTTCGCCCACC 62.920 68.421 0.00 0.00 0.00 4.61
2570 2655 4.722700 CCCTTCGCCCACCCACAG 62.723 72.222 0.00 0.00 0.00 3.66
2571 2656 3.636231 CCTTCGCCCACCCACAGA 61.636 66.667 0.00 0.00 0.00 3.41
2572 2657 2.046892 CTTCGCCCACCCACAGAG 60.047 66.667 0.00 0.00 0.00 3.35
2573 2658 2.847234 TTCGCCCACCCACAGAGT 60.847 61.111 0.00 0.00 0.00 3.24
2574 2659 2.397413 CTTCGCCCACCCACAGAGTT 62.397 60.000 0.00 0.00 0.00 3.01
2575 2660 2.358737 CGCCCACCCACAGAGTTC 60.359 66.667 0.00 0.00 0.00 3.01
2592 2677 0.699399 TTCCCTCTGTCTCTCGTCCT 59.301 55.000 0.00 0.00 0.00 3.85
2608 2693 5.080969 TCGTCCTTTCCTCATTCGTTTAT 57.919 39.130 0.00 0.00 0.00 1.40
2615 2700 6.806739 CCTTTCCTCATTCGTTTATGTTTTCC 59.193 38.462 0.00 0.00 0.00 3.13
2616 2701 7.309194 CCTTTCCTCATTCGTTTATGTTTTCCT 60.309 37.037 0.00 0.00 0.00 3.36
2617 2702 7.519032 TTCCTCATTCGTTTATGTTTTCCTT 57.481 32.000 0.00 0.00 0.00 3.36
2618 2703 7.519032 TCCTCATTCGTTTATGTTTTCCTTT 57.481 32.000 0.00 0.00 0.00 3.11
2619 2704 7.590279 TCCTCATTCGTTTATGTTTTCCTTTC 58.410 34.615 0.00 0.00 0.00 2.62
2620 2705 7.447238 TCCTCATTCGTTTATGTTTTCCTTTCT 59.553 33.333 0.00 0.00 0.00 2.52
2621 2706 8.726988 CCTCATTCGTTTATGTTTTCCTTTCTA 58.273 33.333 0.00 0.00 0.00 2.10
2657 2743 4.142337 TGGTCATGTCAATGTGATGATTGC 60.142 41.667 0.00 0.00 33.95 3.56
2663 2749 4.763279 TGTCAATGTGATGATTGCTGTCTT 59.237 37.500 0.00 0.00 33.95 3.01
2741 2830 4.241999 GGCCGCATGCGTCATGTC 62.242 66.667 35.55 20.06 43.10 3.06
2742 2831 3.197790 GCCGCATGCGTCATGTCT 61.198 61.111 35.55 0.00 43.10 3.41
2743 2832 3.009140 CCGCATGCGTCATGTCTC 58.991 61.111 35.55 0.00 43.10 3.36
2744 2833 1.810853 CCGCATGCGTCATGTCTCA 60.811 57.895 35.55 0.00 43.10 3.27
2745 2834 1.156034 CCGCATGCGTCATGTCTCAT 61.156 55.000 35.55 0.00 43.10 2.90
2746 2835 0.042448 CGCATGCGTCATGTCTCATG 60.042 55.000 31.33 15.67 43.10 3.07
2747 2836 1.012086 GCATGCGTCATGTCTCATGT 58.988 50.000 19.33 0.00 43.10 3.21
2748 2837 1.267882 GCATGCGTCATGTCTCATGTG 60.268 52.381 19.33 2.95 43.10 3.21
2749 2838 1.012086 ATGCGTCATGTCTCATGTGC 58.988 50.000 16.22 16.22 0.00 4.57
2750 2839 0.037046 TGCGTCATGTCTCATGTGCT 60.037 50.000 20.25 0.00 0.00 4.40
2751 2840 0.372679 GCGTCATGTCTCATGTGCTG 59.627 55.000 15.99 6.03 0.00 4.41
2752 2841 2.000429 CGTCATGTCTCATGTGCTGA 58.000 50.000 9.13 0.00 0.00 4.26
2753 2842 2.547826 CGTCATGTCTCATGTGCTGAT 58.452 47.619 9.13 0.00 32.10 2.90
2757 2846 5.922544 CGTCATGTCTCATGTGCTGATATTA 59.077 40.000 9.13 0.00 32.10 0.98
2818 2909 5.036737 GGAATTGCACGATTGGACTATTTG 58.963 41.667 0.00 0.00 0.00 2.32
2819 2910 5.393027 GGAATTGCACGATTGGACTATTTGT 60.393 40.000 0.00 0.00 0.00 2.83
2826 2918 6.128391 GCACGATTGGACTATTTGTTTGACTA 60.128 38.462 0.00 0.00 0.00 2.59
2855 2947 4.223923 AGTCTTGGTCTCCTGTTTGGATAG 59.776 45.833 0.00 0.00 45.16 2.08
2861 2953 4.345257 GGTCTCCTGTTTGGATAGCTCATA 59.655 45.833 0.00 0.00 45.16 2.15
2862 2954 5.293560 GTCTCCTGTTTGGATAGCTCATAC 58.706 45.833 0.00 0.00 45.16 2.39
2863 2955 5.069781 GTCTCCTGTTTGGATAGCTCATACT 59.930 44.000 0.00 0.00 45.16 2.12
2864 2956 5.663106 TCTCCTGTTTGGATAGCTCATACTT 59.337 40.000 0.00 0.00 45.16 2.24
2865 2957 5.674525 TCCTGTTTGGATAGCTCATACTTG 58.325 41.667 0.00 0.00 40.56 3.16
2866 2958 4.818546 CCTGTTTGGATAGCTCATACTTGG 59.181 45.833 0.00 0.00 38.35 3.61
2867 2959 5.396772 CCTGTTTGGATAGCTCATACTTGGA 60.397 44.000 0.00 0.00 38.35 3.53
2868 2960 6.061022 TGTTTGGATAGCTCATACTTGGAA 57.939 37.500 0.00 0.00 0.00 3.53
2869 2961 6.480763 TGTTTGGATAGCTCATACTTGGAAA 58.519 36.000 0.00 0.00 0.00 3.13
2870 2962 7.118723 TGTTTGGATAGCTCATACTTGGAAAT 58.881 34.615 0.00 0.00 0.00 2.17
2871 2963 7.067372 TGTTTGGATAGCTCATACTTGGAAATG 59.933 37.037 0.00 0.00 0.00 2.32
2872 2964 6.252599 TGGATAGCTCATACTTGGAAATGT 57.747 37.500 0.00 0.00 0.00 2.71
2873 2965 6.057533 TGGATAGCTCATACTTGGAAATGTG 58.942 40.000 0.00 0.00 0.00 3.21
2874 2966 5.471456 GGATAGCTCATACTTGGAAATGTGG 59.529 44.000 0.00 0.00 0.00 4.17
2875 2967 4.307032 AGCTCATACTTGGAAATGTGGT 57.693 40.909 0.00 0.00 0.00 4.16
2876 2968 4.666512 AGCTCATACTTGGAAATGTGGTT 58.333 39.130 0.00 0.00 0.00 3.67
2877 2969 5.079643 AGCTCATACTTGGAAATGTGGTTT 58.920 37.500 0.00 0.00 0.00 3.27
2878 2970 5.183904 AGCTCATACTTGGAAATGTGGTTTC 59.816 40.000 0.00 0.00 44.43 2.78
2879 2971 5.048083 GCTCATACTTGGAAATGTGGTTTCA 60.048 40.000 3.32 0.00 46.49 2.69
2880 2972 6.350445 GCTCATACTTGGAAATGTGGTTTCAT 60.350 38.462 3.32 0.00 46.49 2.57
2881 2973 7.148086 GCTCATACTTGGAAATGTGGTTTCATA 60.148 37.037 3.32 0.00 46.49 2.15
2882 2974 8.642935 TCATACTTGGAAATGTGGTTTCATAA 57.357 30.769 3.32 0.00 46.49 1.90
2883 2975 9.253832 TCATACTTGGAAATGTGGTTTCATAAT 57.746 29.630 3.32 0.00 46.49 1.28
2884 2976 9.304731 CATACTTGGAAATGTGGTTTCATAATG 57.695 33.333 3.32 0.00 46.49 1.90
2885 2977 6.165577 ACTTGGAAATGTGGTTTCATAATGC 58.834 36.000 3.32 0.00 46.49 3.56
2886 2978 5.735285 TGGAAATGTGGTTTCATAATGCA 57.265 34.783 0.00 0.00 46.49 3.96
2887 2979 5.722263 TGGAAATGTGGTTTCATAATGCAG 58.278 37.500 0.00 0.00 46.49 4.41
2888 2980 5.245751 TGGAAATGTGGTTTCATAATGCAGT 59.754 36.000 0.00 0.00 46.49 4.40
2889 2981 6.435591 TGGAAATGTGGTTTCATAATGCAGTA 59.564 34.615 0.00 0.00 46.49 2.74
2890 2982 6.751888 GGAAATGTGGTTTCATAATGCAGTAC 59.248 38.462 0.00 0.00 46.49 2.73
2891 2983 6.832520 AATGTGGTTTCATAATGCAGTACA 57.167 33.333 0.00 0.00 0.00 2.90
2892 2984 7.408756 AATGTGGTTTCATAATGCAGTACAT 57.591 32.000 0.00 0.00 42.30 2.29
2893 2985 8.518430 AATGTGGTTTCATAATGCAGTACATA 57.482 30.769 0.00 0.00 38.34 2.29
2894 2986 8.696043 ATGTGGTTTCATAATGCAGTACATAT 57.304 30.769 0.00 0.00 38.34 1.78
2895 2987 9.791801 ATGTGGTTTCATAATGCAGTACATATA 57.208 29.630 0.00 0.00 38.34 0.86
2896 2988 9.271828 TGTGGTTTCATAATGCAGTACATATAG 57.728 33.333 0.00 0.00 38.34 1.31
2897 2989 9.489084 GTGGTTTCATAATGCAGTACATATAGA 57.511 33.333 0.00 0.00 38.34 1.98
3141 3234 0.944311 ACTAGTTTCACGCACGCAGG 60.944 55.000 0.00 0.00 0.00 4.85
3232 3325 2.168106 AGTTTGCCATGTGTTTCTGCAA 59.832 40.909 0.00 0.00 39.92 4.08
3241 3334 3.550820 TGTGTTTCTGCAAGTACATGGT 58.449 40.909 0.00 0.00 33.64 3.55
3311 3408 2.871022 GTTGCCATGTGTTTTTGCATGA 59.129 40.909 0.00 0.00 43.60 3.07
3375 3473 7.648142 CAACTCTTTCTTTTACATGGCAACTA 58.352 34.615 0.00 0.00 37.61 2.24
3391 3489 1.843368 ACTACCCTAGCGTGCTTGTA 58.157 50.000 0.00 0.00 0.00 2.41
3455 3554 3.006940 CCATGCCTTTTCGTAGTGCTAA 58.993 45.455 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103432 TCAGGCGTCCAACTAGTTCAAA 59.897 45.455 4.77 0.00 0.00 2.69
3 4 1.272769 AGTCAGGCGTCCAACTAGTTC 59.727 52.381 4.77 0.00 0.00 3.01
4 5 1.272769 GAGTCAGGCGTCCAACTAGTT 59.727 52.381 1.12 1.12 0.00 2.24
5 6 0.889306 GAGTCAGGCGTCCAACTAGT 59.111 55.000 0.00 0.00 0.00 2.57
6 7 0.179161 CGAGTCAGGCGTCCAACTAG 60.179 60.000 0.00 0.00 0.00 2.57
7 8 0.607217 TCGAGTCAGGCGTCCAACTA 60.607 55.000 0.00 0.00 0.00 2.24
8 9 1.461091 TTCGAGTCAGGCGTCCAACT 61.461 55.000 0.00 0.00 0.00 3.16
9 10 0.599204 TTTCGAGTCAGGCGTCCAAC 60.599 55.000 0.00 0.00 0.00 3.77
10 11 0.105224 TTTTCGAGTCAGGCGTCCAA 59.895 50.000 0.00 0.00 0.00 3.53
11 12 0.320374 ATTTTCGAGTCAGGCGTCCA 59.680 50.000 0.00 0.00 0.00 4.02
12 13 1.925185 GTATTTTCGAGTCAGGCGTCC 59.075 52.381 0.00 0.00 0.00 4.79
13 14 1.925185 GGTATTTTCGAGTCAGGCGTC 59.075 52.381 0.00 0.00 0.00 5.19
14 15 1.405121 GGGTATTTTCGAGTCAGGCGT 60.405 52.381 0.00 0.00 0.00 5.68
15 16 1.287425 GGGTATTTTCGAGTCAGGCG 58.713 55.000 0.00 0.00 0.00 5.52
16 17 1.287425 CGGGTATTTTCGAGTCAGGC 58.713 55.000 0.00 0.00 0.00 4.85
17 18 1.134788 AGCGGGTATTTTCGAGTCAGG 60.135 52.381 0.00 0.00 0.00 3.86
18 19 2.194271 GAGCGGGTATTTTCGAGTCAG 58.806 52.381 0.00 0.00 0.00 3.51
19 20 1.546923 TGAGCGGGTATTTTCGAGTCA 59.453 47.619 0.00 0.00 0.00 3.41
20 21 2.288961 TGAGCGGGTATTTTCGAGTC 57.711 50.000 0.00 0.00 0.00 3.36
21 22 2.754946 TTGAGCGGGTATTTTCGAGT 57.245 45.000 0.00 0.00 0.00 4.18
22 23 2.218759 CGATTGAGCGGGTATTTTCGAG 59.781 50.000 0.00 0.00 0.00 4.04
23 24 2.198406 CGATTGAGCGGGTATTTTCGA 58.802 47.619 0.00 0.00 0.00 3.71
24 25 1.332904 GCGATTGAGCGGGTATTTTCG 60.333 52.381 0.00 0.00 0.00 3.46
25 26 1.002792 GGCGATTGAGCGGGTATTTTC 60.003 52.381 0.00 0.00 38.18 2.29
26 27 1.021968 GGCGATTGAGCGGGTATTTT 58.978 50.000 0.00 0.00 38.18 1.82
27 28 0.107410 TGGCGATTGAGCGGGTATTT 60.107 50.000 0.00 0.00 38.18 1.40
28 29 0.108585 ATGGCGATTGAGCGGGTATT 59.891 50.000 0.00 0.00 38.18 1.89
29 30 0.108585 AATGGCGATTGAGCGGGTAT 59.891 50.000 0.00 0.00 38.18 2.73
30 31 0.107410 AAATGGCGATTGAGCGGGTA 60.107 50.000 0.00 0.00 38.18 3.69
31 32 0.965363 AAAATGGCGATTGAGCGGGT 60.965 50.000 0.00 0.00 38.18 5.28
32 33 1.002468 CTAAAATGGCGATTGAGCGGG 60.002 52.381 0.00 0.00 38.18 6.13
33 34 1.670811 ACTAAAATGGCGATTGAGCGG 59.329 47.619 0.00 0.00 38.18 5.52
34 35 3.601586 CGTACTAAAATGGCGATTGAGCG 60.602 47.826 0.00 0.00 38.18 5.03
35 36 3.308866 ACGTACTAAAATGGCGATTGAGC 59.691 43.478 0.00 0.00 0.00 4.26
36 37 4.328983 ACACGTACTAAAATGGCGATTGAG 59.671 41.667 0.00 0.00 0.00 3.02
37 38 4.247258 ACACGTACTAAAATGGCGATTGA 58.753 39.130 0.00 0.00 0.00 2.57
38 39 4.574759 GACACGTACTAAAATGGCGATTG 58.425 43.478 0.00 0.00 0.00 2.67
39 40 3.305094 CGACACGTACTAAAATGGCGATT 59.695 43.478 0.00 0.00 46.68 3.34
40 41 2.855963 CGACACGTACTAAAATGGCGAT 59.144 45.455 0.00 0.00 46.68 4.58
41 42 2.252747 CGACACGTACTAAAATGGCGA 58.747 47.619 0.00 0.00 46.68 5.54
42 43 2.688997 CGACACGTACTAAAATGGCG 57.311 50.000 0.00 0.00 37.22 5.69
43 44 3.429543 TGAACGACACGTACTAAAATGGC 59.570 43.478 0.00 0.00 39.99 4.40
44 45 5.773239 ATGAACGACACGTACTAAAATGG 57.227 39.130 0.00 0.00 39.99 3.16
45 46 7.484007 ACTCTATGAACGACACGTACTAAAATG 59.516 37.037 0.00 0.00 39.99 2.32
46 47 7.533426 ACTCTATGAACGACACGTACTAAAAT 58.467 34.615 0.00 0.00 39.99 1.82
47 48 6.902341 ACTCTATGAACGACACGTACTAAAA 58.098 36.000 0.00 0.00 39.99 1.52
48 49 6.486253 ACTCTATGAACGACACGTACTAAA 57.514 37.500 0.00 0.00 39.99 1.85
49 50 6.147656 TGAACTCTATGAACGACACGTACTAA 59.852 38.462 0.00 0.00 39.99 2.24
50 51 5.639082 TGAACTCTATGAACGACACGTACTA 59.361 40.000 0.00 0.00 39.99 1.82
51 52 4.453478 TGAACTCTATGAACGACACGTACT 59.547 41.667 0.00 0.00 39.99 2.73
52 53 4.552660 GTGAACTCTATGAACGACACGTAC 59.447 45.833 0.00 0.00 39.99 3.67
53 54 4.667415 CGTGAACTCTATGAACGACACGTA 60.667 45.833 0.00 0.00 39.99 3.57
54 55 3.562505 GTGAACTCTATGAACGACACGT 58.437 45.455 0.00 0.00 43.97 4.49
55 56 2.588539 CGTGAACTCTATGAACGACACG 59.411 50.000 0.00 0.00 42.21 4.49
56 57 3.818387 TCGTGAACTCTATGAACGACAC 58.182 45.455 0.00 0.00 38.26 3.67
59 60 4.696899 ATGTCGTGAACTCTATGAACGA 57.303 40.909 0.00 0.00 40.63 3.85
60 61 4.490959 GCAATGTCGTGAACTCTATGAACG 60.491 45.833 0.00 0.00 35.64 3.95
61 62 4.627467 AGCAATGTCGTGAACTCTATGAAC 59.373 41.667 0.00 0.00 0.00 3.18
62 63 4.627035 CAGCAATGTCGTGAACTCTATGAA 59.373 41.667 0.00 0.00 0.00 2.57
63 64 4.176271 CAGCAATGTCGTGAACTCTATGA 58.824 43.478 0.00 0.00 0.00 2.15
64 65 3.928992 ACAGCAATGTCGTGAACTCTATG 59.071 43.478 0.00 0.00 0.00 2.23
65 66 4.193826 ACAGCAATGTCGTGAACTCTAT 57.806 40.909 0.00 0.00 0.00 1.98
66 67 3.660501 ACAGCAATGTCGTGAACTCTA 57.339 42.857 0.00 0.00 0.00 2.43
67 68 2.533266 ACAGCAATGTCGTGAACTCT 57.467 45.000 0.00 0.00 0.00 3.24
68 69 4.447724 TCTTTACAGCAATGTCGTGAACTC 59.552 41.667 0.00 0.00 0.00 3.01
69 70 4.377021 TCTTTACAGCAATGTCGTGAACT 58.623 39.130 0.00 0.00 0.00 3.01
70 71 4.725556 TCTTTACAGCAATGTCGTGAAC 57.274 40.909 0.00 0.00 0.00 3.18
71 72 6.310467 GTCTATCTTTACAGCAATGTCGTGAA 59.690 38.462 0.00 0.00 0.00 3.18
72 73 5.805486 GTCTATCTTTACAGCAATGTCGTGA 59.195 40.000 0.00 0.00 0.00 4.35
73 74 5.005779 GGTCTATCTTTACAGCAATGTCGTG 59.994 44.000 0.00 0.00 0.00 4.35
74 75 5.109903 GGTCTATCTTTACAGCAATGTCGT 58.890 41.667 0.00 0.00 0.00 4.34
75 76 5.109210 TGGTCTATCTTTACAGCAATGTCG 58.891 41.667 0.00 0.00 0.00 4.35
76 77 6.341316 TCTGGTCTATCTTTACAGCAATGTC 58.659 40.000 0.00 0.00 0.00 3.06
77 78 6.299805 TCTGGTCTATCTTTACAGCAATGT 57.700 37.500 0.00 0.00 0.00 2.71
78 79 7.798596 ATTCTGGTCTATCTTTACAGCAATG 57.201 36.000 0.00 0.00 0.00 2.82
79 80 9.553064 CTTATTCTGGTCTATCTTTACAGCAAT 57.447 33.333 0.00 0.00 0.00 3.56
80 81 7.495934 GCTTATTCTGGTCTATCTTTACAGCAA 59.504 37.037 0.00 0.00 0.00 3.91
81 82 6.986817 GCTTATTCTGGTCTATCTTTACAGCA 59.013 38.462 0.00 0.00 0.00 4.41
82 83 6.144724 CGCTTATTCTGGTCTATCTTTACAGC 59.855 42.308 0.00 0.00 0.00 4.40
83 84 6.642950 CCGCTTATTCTGGTCTATCTTTACAG 59.357 42.308 0.00 0.00 0.00 2.74
84 85 6.322969 TCCGCTTATTCTGGTCTATCTTTACA 59.677 38.462 0.00 0.00 0.00 2.41
85 86 6.746120 TCCGCTTATTCTGGTCTATCTTTAC 58.254 40.000 0.00 0.00 0.00 2.01
86 87 6.971726 TCCGCTTATTCTGGTCTATCTTTA 57.028 37.500 0.00 0.00 0.00 1.85
87 88 5.871396 TCCGCTTATTCTGGTCTATCTTT 57.129 39.130 0.00 0.00 0.00 2.52
88 89 6.426646 AATCCGCTTATTCTGGTCTATCTT 57.573 37.500 0.00 0.00 0.00 2.40
89 90 6.426646 AAATCCGCTTATTCTGGTCTATCT 57.573 37.500 0.00 0.00 0.00 1.98
90 91 8.603242 TTAAAATCCGCTTATTCTGGTCTATC 57.397 34.615 0.00 0.00 0.00 2.08
91 92 7.661847 CCTTAAAATCCGCTTATTCTGGTCTAT 59.338 37.037 0.00 0.00 0.00 1.98
92 93 6.990349 CCTTAAAATCCGCTTATTCTGGTCTA 59.010 38.462 0.00 0.00 0.00 2.59
93 94 5.823045 CCTTAAAATCCGCTTATTCTGGTCT 59.177 40.000 0.00 0.00 0.00 3.85
94 95 5.820947 TCCTTAAAATCCGCTTATTCTGGTC 59.179 40.000 0.00 0.00 0.00 4.02
95 96 5.751586 TCCTTAAAATCCGCTTATTCTGGT 58.248 37.500 0.00 0.00 0.00 4.00
96 97 6.672147 CATCCTTAAAATCCGCTTATTCTGG 58.328 40.000 0.00 0.00 0.00 3.86
97 98 6.145535 GCATCCTTAAAATCCGCTTATTCTG 58.854 40.000 0.00 0.00 0.00 3.02
98 99 5.827797 TGCATCCTTAAAATCCGCTTATTCT 59.172 36.000 0.00 0.00 0.00 2.40
99 100 5.915196 GTGCATCCTTAAAATCCGCTTATTC 59.085 40.000 0.00 0.00 0.00 1.75
100 101 5.359576 TGTGCATCCTTAAAATCCGCTTATT 59.640 36.000 0.00 0.00 0.00 1.40
101 102 4.887071 TGTGCATCCTTAAAATCCGCTTAT 59.113 37.500 0.00 0.00 0.00 1.73
102 103 4.265893 TGTGCATCCTTAAAATCCGCTTA 58.734 39.130 0.00 0.00 0.00 3.09
103 104 3.088532 TGTGCATCCTTAAAATCCGCTT 58.911 40.909 0.00 0.00 0.00 4.68
104 105 2.684881 CTGTGCATCCTTAAAATCCGCT 59.315 45.455 0.00 0.00 0.00 5.52
105 106 2.796032 GCTGTGCATCCTTAAAATCCGC 60.796 50.000 0.00 0.00 0.00 5.54
106 107 2.223572 GGCTGTGCATCCTTAAAATCCG 60.224 50.000 0.00 0.00 0.00 4.18
107 108 2.223572 CGGCTGTGCATCCTTAAAATCC 60.224 50.000 0.00 0.00 0.00 3.01
108 109 2.796032 GCGGCTGTGCATCCTTAAAATC 60.796 50.000 0.00 0.00 34.15 2.17
109 110 1.134946 GCGGCTGTGCATCCTTAAAAT 59.865 47.619 0.00 0.00 34.15 1.82
110 111 0.525761 GCGGCTGTGCATCCTTAAAA 59.474 50.000 0.00 0.00 34.15 1.52
111 112 0.322456 AGCGGCTGTGCATCCTTAAA 60.322 50.000 0.00 0.00 37.31 1.52
112 113 1.026182 CAGCGGCTGTGCATCCTTAA 61.026 55.000 21.60 0.00 37.31 1.85
113 114 1.450134 CAGCGGCTGTGCATCCTTA 60.450 57.895 21.60 0.00 37.31 2.69
114 115 2.749044 CAGCGGCTGTGCATCCTT 60.749 61.111 21.60 0.00 37.31 3.36
115 116 4.790962 CCAGCGGCTGTGCATCCT 62.791 66.667 26.79 0.00 37.31 3.24
117 118 3.807538 CACCAGCGGCTGTGCATC 61.808 66.667 26.79 0.00 37.31 3.91
128 129 3.242543 CGTATGATTGAAAGAGCACCAGC 60.243 47.826 0.00 0.00 42.56 4.85
129 130 3.935203 ACGTATGATTGAAAGAGCACCAG 59.065 43.478 0.00 0.00 0.00 4.00
130 131 3.937814 ACGTATGATTGAAAGAGCACCA 58.062 40.909 0.00 0.00 0.00 4.17
131 132 5.523916 ACATACGTATGATTGAAAGAGCACC 59.476 40.000 35.81 0.00 37.15 5.01
132 133 6.292381 GGACATACGTATGATTGAAAGAGCAC 60.292 42.308 35.81 13.00 37.15 4.40
133 134 5.753438 GGACATACGTATGATTGAAAGAGCA 59.247 40.000 35.81 0.00 37.15 4.26
134 135 5.107837 CGGACATACGTATGATTGAAAGAGC 60.108 44.000 35.81 14.09 37.15 4.09
135 136 5.402568 CCGGACATACGTATGATTGAAAGAG 59.597 44.000 35.81 17.40 37.15 2.85
136 137 5.286438 CCGGACATACGTATGATTGAAAGA 58.714 41.667 35.81 0.00 37.15 2.52
137 138 4.084537 GCCGGACATACGTATGATTGAAAG 60.085 45.833 35.81 19.64 37.15 2.62
138 139 3.805422 GCCGGACATACGTATGATTGAAA 59.195 43.478 35.81 0.00 37.15 2.69
139 140 3.386486 GCCGGACATACGTATGATTGAA 58.614 45.455 35.81 0.00 37.15 2.69
140 141 2.288579 GGCCGGACATACGTATGATTGA 60.289 50.000 35.81 0.00 37.15 2.57
141 142 2.066262 GGCCGGACATACGTATGATTG 58.934 52.381 35.81 23.87 37.15 2.67
142 143 1.336517 CGGCCGGACATACGTATGATT 60.337 52.381 35.81 18.85 37.15 2.57
143 144 0.242825 CGGCCGGACATACGTATGAT 59.757 55.000 35.81 22.21 37.15 2.45
144 145 1.655885 CGGCCGGACATACGTATGA 59.344 57.895 35.81 0.00 37.15 2.15
145 146 1.372499 CCGGCCGGACATACGTATG 60.372 63.158 41.82 29.48 39.55 2.39
146 147 1.529010 TCCGGCCGGACATACGTAT 60.529 57.895 42.66 1.14 39.76 3.06
147 148 2.124362 TCCGGCCGGACATACGTA 60.124 61.111 42.66 19.15 39.76 3.57
156 157 1.890876 TGATGATTAAATCCGGCCGG 58.109 50.000 39.13 39.13 0.00 6.13
157 158 4.635765 ACATATGATGATTAAATCCGGCCG 59.364 41.667 21.04 21.04 0.00 6.13
158 159 5.647658 TCACATATGATGATTAAATCCGGCC 59.352 40.000 10.38 0.00 0.00 6.13
159 160 6.741992 TCACATATGATGATTAAATCCGGC 57.258 37.500 10.38 0.00 0.00 6.13
160 161 9.563898 CAATTCACATATGATGATTAAATCCGG 57.436 33.333 10.38 0.00 33.85 5.14
172 173 9.859427 ACAAAATTCGAACAATTCACATATGAT 57.141 25.926 10.38 0.00 33.85 2.45
173 174 9.340695 GACAAAATTCGAACAATTCACATATGA 57.659 29.630 10.38 0.00 0.00 2.15
174 175 9.127006 TGACAAAATTCGAACAATTCACATATG 57.873 29.630 0.00 0.00 0.00 1.78
175 176 9.859427 ATGACAAAATTCGAACAATTCACATAT 57.141 25.926 0.00 0.00 0.00 1.78
176 177 9.127006 CATGACAAAATTCGAACAATTCACATA 57.873 29.630 0.00 0.00 0.00 2.29
177 178 7.359431 GCATGACAAAATTCGAACAATTCACAT 60.359 33.333 0.00 0.00 0.00 3.21
178 179 6.074409 GCATGACAAAATTCGAACAATTCACA 60.074 34.615 0.00 0.00 0.00 3.58
179 180 6.291385 GCATGACAAAATTCGAACAATTCAC 58.709 36.000 0.00 0.00 0.00 3.18
180 181 5.116831 CGCATGACAAAATTCGAACAATTCA 59.883 36.000 0.00 0.16 0.00 2.57
181 182 5.532041 CGCATGACAAAATTCGAACAATTC 58.468 37.500 0.00 0.00 0.00 2.17
182 183 4.143347 GCGCATGACAAAATTCGAACAATT 60.143 37.500 0.30 0.00 0.00 2.32
183 184 3.364621 GCGCATGACAAAATTCGAACAAT 59.635 39.130 0.30 0.00 0.00 2.71
184 185 2.723658 GCGCATGACAAAATTCGAACAA 59.276 40.909 0.30 0.00 0.00 2.83
185 186 2.287248 TGCGCATGACAAAATTCGAACA 60.287 40.909 5.66 0.00 0.00 3.18
186 187 2.315011 TGCGCATGACAAAATTCGAAC 58.685 42.857 5.66 0.00 0.00 3.95
187 188 2.695613 TGCGCATGACAAAATTCGAA 57.304 40.000 5.66 0.00 0.00 3.71
188 189 2.917701 ATGCGCATGACAAAATTCGA 57.082 40.000 24.69 0.00 0.00 3.71
189 190 2.465109 GCTATGCGCATGACAAAATTCG 59.535 45.455 32.48 0.80 38.92 3.34
190 191 3.437428 TGCTATGCGCATGACAAAATTC 58.563 40.909 32.48 10.55 45.47 2.17
191 192 3.507103 TGCTATGCGCATGACAAAATT 57.493 38.095 32.48 6.35 45.47 1.82
202 203 0.315382 GATGTGTTCGTGCTATGCGC 60.315 55.000 0.00 0.00 39.77 6.09
203 204 0.301687 GGATGTGTTCGTGCTATGCG 59.698 55.000 0.00 0.00 0.00 4.73
204 205 0.301687 CGGATGTGTTCGTGCTATGC 59.698 55.000 0.00 0.00 0.00 3.14
205 206 1.588404 GTCGGATGTGTTCGTGCTATG 59.412 52.381 0.00 0.00 0.00 2.23
206 207 1.203758 TGTCGGATGTGTTCGTGCTAT 59.796 47.619 0.00 0.00 0.00 2.97
207 208 0.599060 TGTCGGATGTGTTCGTGCTA 59.401 50.000 0.00 0.00 0.00 3.49
208 209 0.037326 ATGTCGGATGTGTTCGTGCT 60.037 50.000 0.00 0.00 0.00 4.40
209 210 1.588404 CTATGTCGGATGTGTTCGTGC 59.412 52.381 0.00 0.00 0.00 5.34
210 211 2.159296 TCCTATGTCGGATGTGTTCGTG 60.159 50.000 0.00 0.00 0.00 4.35
211 212 2.097036 TCCTATGTCGGATGTGTTCGT 58.903 47.619 0.00 0.00 0.00 3.85
212 213 2.863401 TCCTATGTCGGATGTGTTCG 57.137 50.000 0.00 0.00 0.00 3.95
213 214 4.273480 CCAAATCCTATGTCGGATGTGTTC 59.727 45.833 8.70 0.00 44.15 3.18
214 215 4.080582 TCCAAATCCTATGTCGGATGTGTT 60.081 41.667 8.70 0.00 44.15 3.32
215 216 3.454447 TCCAAATCCTATGTCGGATGTGT 59.546 43.478 8.70 0.00 44.15 3.72
216 217 4.071961 TCCAAATCCTATGTCGGATGTG 57.928 45.455 3.50 3.50 44.89 3.21
217 218 4.771114 TTCCAAATCCTATGTCGGATGT 57.229 40.909 0.00 0.00 42.89 3.06
218 219 5.555017 AGATTCCAAATCCTATGTCGGATG 58.445 41.667 0.00 0.00 42.89 3.51
219 220 5.832539 AGATTCCAAATCCTATGTCGGAT 57.167 39.130 0.00 0.00 45.59 4.18
220 221 6.935240 ATAGATTCCAAATCCTATGTCGGA 57.065 37.500 0.00 0.00 37.50 4.55
221 222 7.602517 GAATAGATTCCAAATCCTATGTCGG 57.397 40.000 0.00 0.00 0.00 4.79
236 237 4.396166 CCTGTGTGTTGTGGGAATAGATTC 59.604 45.833 0.00 0.00 36.08 2.52
237 238 4.042809 TCCTGTGTGTTGTGGGAATAGATT 59.957 41.667 0.00 0.00 0.00 2.40
238 239 3.587061 TCCTGTGTGTTGTGGGAATAGAT 59.413 43.478 0.00 0.00 0.00 1.98
239 240 2.976185 TCCTGTGTGTTGTGGGAATAGA 59.024 45.455 0.00 0.00 0.00 1.98
240 241 3.074412 GTCCTGTGTGTTGTGGGAATAG 58.926 50.000 0.00 0.00 0.00 1.73
241 242 2.708861 AGTCCTGTGTGTTGTGGGAATA 59.291 45.455 0.00 0.00 0.00 1.75
247 248 6.189677 TCTTTTTAAGTCCTGTGTGTTGTG 57.810 37.500 0.00 0.00 0.00 3.33
252 253 7.762382 AGAAAGTTCTTTTTAAGTCCTGTGTG 58.238 34.615 0.00 0.00 32.55 3.82
253 254 7.939784 AGAAAGTTCTTTTTAAGTCCTGTGT 57.060 32.000 0.00 0.00 32.55 3.72
288 291 4.588899 TGGTGTACAAATTCTGAGGGATG 58.411 43.478 0.00 0.00 0.00 3.51
293 296 6.615088 CAAGGAATGGTGTACAAATTCTGAG 58.385 40.000 22.42 13.47 32.15 3.35
316 319 1.320507 TTCATTCAGCAAGCACAGCA 58.679 45.000 0.00 0.00 0.00 4.41
335 338 1.705186 AGCACCCTGTTCCTGTTACAT 59.295 47.619 0.00 0.00 0.00 2.29
344 347 9.788960 CTTTATTAAGAAATTAGCACCCTGTTC 57.211 33.333 0.00 0.00 32.92 3.18
345 348 8.251026 GCTTTATTAAGAAATTAGCACCCTGTT 58.749 33.333 0.00 0.00 34.32 3.16
346 349 7.615757 AGCTTTATTAAGAAATTAGCACCCTGT 59.384 33.333 7.52 0.00 35.56 4.00
347 350 8.000780 AGCTTTATTAAGAAATTAGCACCCTG 57.999 34.615 7.52 0.00 35.56 4.45
348 351 7.285629 GGAGCTTTATTAAGAAATTAGCACCCT 59.714 37.037 9.16 0.00 36.90 4.34
349 352 7.426410 GGAGCTTTATTAAGAAATTAGCACCC 58.574 38.462 9.16 5.82 36.90 4.61
414 417 9.836076 GCGTAGAAAACTGTAAGGATAATTTTT 57.164 29.630 0.00 0.00 39.30 1.94
415 418 8.456471 GGCGTAGAAAACTGTAAGGATAATTTT 58.544 33.333 0.00 0.00 39.30 1.82
416 419 7.608761 TGGCGTAGAAAACTGTAAGGATAATTT 59.391 33.333 0.00 0.00 39.30 1.82
418 421 6.646267 TGGCGTAGAAAACTGTAAGGATAAT 58.354 36.000 0.00 0.00 39.30 1.28
419 422 6.040209 TGGCGTAGAAAACTGTAAGGATAA 57.960 37.500 0.00 0.00 39.30 1.75
420 423 5.664294 TGGCGTAGAAAACTGTAAGGATA 57.336 39.130 0.00 0.00 39.30 2.59
421 424 4.546829 TGGCGTAGAAAACTGTAAGGAT 57.453 40.909 0.00 0.00 39.30 3.24
422 425 4.546829 ATGGCGTAGAAAACTGTAAGGA 57.453 40.909 0.00 0.00 39.30 3.36
424 427 4.935808 AGGAATGGCGTAGAAAACTGTAAG 59.064 41.667 0.00 0.00 42.29 2.34
425 428 4.693566 CAGGAATGGCGTAGAAAACTGTAA 59.306 41.667 0.00 0.00 0.00 2.41
426 429 4.250464 CAGGAATGGCGTAGAAAACTGTA 58.750 43.478 0.00 0.00 0.00 2.74
427 430 3.074412 CAGGAATGGCGTAGAAAACTGT 58.926 45.455 0.00 0.00 0.00 3.55
428 431 3.074412 ACAGGAATGGCGTAGAAAACTG 58.926 45.455 0.00 0.00 0.00 3.16
429 432 3.418684 ACAGGAATGGCGTAGAAAACT 57.581 42.857 0.00 0.00 0.00 2.66
430 433 5.049267 TGTTTACAGGAATGGCGTAGAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
431 434 5.049267 GTGTTTACAGGAATGGCGTAGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
432 435 4.453136 GTGTTTACAGGAATGGCGTAGAAA 59.547 41.667 0.00 0.00 0.00 2.52
433 436 3.998341 GTGTTTACAGGAATGGCGTAGAA 59.002 43.478 0.00 0.00 0.00 2.10
434 437 3.592059 GTGTTTACAGGAATGGCGTAGA 58.408 45.455 0.00 0.00 0.00 2.59
435 438 2.676342 GGTGTTTACAGGAATGGCGTAG 59.324 50.000 0.00 0.00 0.00 3.51
436 439 2.702261 GGTGTTTACAGGAATGGCGTA 58.298 47.619 0.00 0.00 0.00 4.42
437 440 1.530323 GGTGTTTACAGGAATGGCGT 58.470 50.000 0.00 0.00 0.00 5.68
438 441 0.446222 CGGTGTTTACAGGAATGGCG 59.554 55.000 0.00 0.00 0.00 5.69
439 442 1.199097 CACGGTGTTTACAGGAATGGC 59.801 52.381 0.00 0.00 0.00 4.40
440 443 2.742053 CTCACGGTGTTTACAGGAATGG 59.258 50.000 8.17 0.00 0.00 3.16
441 444 3.399330 ACTCACGGTGTTTACAGGAATG 58.601 45.455 8.17 0.00 0.00 2.67
442 445 3.764237 ACTCACGGTGTTTACAGGAAT 57.236 42.857 8.17 0.00 0.00 3.01
443 446 4.669206 TTACTCACGGTGTTTACAGGAA 57.331 40.909 8.17 0.00 0.00 3.36
444 447 4.877378 ATTACTCACGGTGTTTACAGGA 57.123 40.909 8.17 0.00 0.00 3.86
445 448 4.390909 GGAATTACTCACGGTGTTTACAGG 59.609 45.833 8.17 0.00 0.00 4.00
446 449 4.090930 CGGAATTACTCACGGTGTTTACAG 59.909 45.833 8.17 0.05 0.00 2.74
447 450 3.989167 CGGAATTACTCACGGTGTTTACA 59.011 43.478 8.17 0.00 0.00 2.41
448 451 3.989817 ACGGAATTACTCACGGTGTTTAC 59.010 43.478 8.17 0.00 0.00 2.01
449 452 4.022068 AGACGGAATTACTCACGGTGTTTA 60.022 41.667 8.17 0.00 0.00 2.01
450 453 3.062042 GACGGAATTACTCACGGTGTTT 58.938 45.455 8.17 0.00 0.00 2.83
451 454 2.298163 AGACGGAATTACTCACGGTGTT 59.702 45.455 8.17 0.00 0.00 3.32
452 455 1.891150 AGACGGAATTACTCACGGTGT 59.109 47.619 8.17 0.00 0.00 4.16
453 456 2.163815 AGAGACGGAATTACTCACGGTG 59.836 50.000 0.56 0.56 33.69 4.94
454 457 2.163815 CAGAGACGGAATTACTCACGGT 59.836 50.000 0.00 0.00 33.69 4.83
455 458 2.479730 CCAGAGACGGAATTACTCACGG 60.480 54.545 0.00 0.00 33.69 4.94
456 459 2.422479 TCCAGAGACGGAATTACTCACG 59.578 50.000 0.00 0.00 33.69 4.35
457 460 4.451629 TTCCAGAGACGGAATTACTCAC 57.548 45.455 0.00 0.00 40.20 3.51
458 461 4.282449 TGTTTCCAGAGACGGAATTACTCA 59.718 41.667 0.00 0.00 44.49 3.41
495 498 2.758130 TGAAAAAGGGAAAAGGCCTGT 58.242 42.857 5.69 0.00 0.00 4.00
499 502 4.213270 CGGATTTTGAAAAAGGGAAAAGGC 59.787 41.667 0.00 0.00 0.00 4.35
500 503 4.754618 CCGGATTTTGAAAAAGGGAAAAGG 59.245 41.667 0.00 0.00 0.00 3.11
501 504 4.213270 GCCGGATTTTGAAAAAGGGAAAAG 59.787 41.667 5.05 0.00 0.00 2.27
502 505 4.130857 GCCGGATTTTGAAAAAGGGAAAA 58.869 39.130 5.05 0.00 0.00 2.29
503 506 3.734463 GCCGGATTTTGAAAAAGGGAAA 58.266 40.909 5.05 0.00 0.00 3.13
504 507 2.288518 CGCCGGATTTTGAAAAAGGGAA 60.289 45.455 5.05 0.00 0.00 3.97
581 591 3.995506 GATCCCAGGTTGGTGGCGG 62.996 68.421 0.00 0.00 35.17 6.13
607 617 4.195334 CGGGAAGGGCATGGGGAG 62.195 72.222 0.00 0.00 0.00 4.30
849 897 2.286502 AGGGGAAGGGAGGAAGGC 60.287 66.667 0.00 0.00 0.00 4.35
855 903 3.093172 GCAGGGAGGGGAAGGGAG 61.093 72.222 0.00 0.00 0.00 4.30
925 977 4.558095 GCCTGTACACTAGAAGAACACGAA 60.558 45.833 0.00 0.00 0.00 3.85
936 988 1.115467 CTCCCTGGCCTGTACACTAG 58.885 60.000 3.32 0.00 0.00 2.57
1018 1090 0.676782 AGGTCAAAGAAATCGGCCGG 60.677 55.000 27.83 6.34 0.00 6.13
1902 1977 0.899019 GGAAGTCGAAGAGGAAGCCT 59.101 55.000 0.00 0.00 36.95 4.58
2271 2346 2.881352 CGCGCCTCCGAGAAGAAC 60.881 66.667 0.00 0.00 36.29 3.01
2542 2617 1.377333 GCGAAGGGGACAAGGAAGG 60.377 63.158 0.00 0.00 0.00 3.46
2572 2657 0.812549 GGACGAGAGACAGAGGGAAC 59.187 60.000 0.00 0.00 0.00 3.62
2573 2658 0.699399 AGGACGAGAGACAGAGGGAA 59.301 55.000 0.00 0.00 0.00 3.97
2574 2659 0.699399 AAGGACGAGAGACAGAGGGA 59.301 55.000 0.00 0.00 0.00 4.20
2575 2660 1.474879 GAAAGGACGAGAGACAGAGGG 59.525 57.143 0.00 0.00 0.00 4.30
2592 2677 7.519032 AGGAAAACATAAACGAATGAGGAAA 57.481 32.000 0.00 0.00 0.00 3.13
2608 2693 9.799106 AGATGAAGAAGAATAGAAAGGAAAACA 57.201 29.630 0.00 0.00 0.00 2.83
2615 2700 8.828644 CATGACCAGATGAAGAAGAATAGAAAG 58.171 37.037 0.00 0.00 0.00 2.62
2616 2701 8.324306 ACATGACCAGATGAAGAAGAATAGAAA 58.676 33.333 0.00 0.00 0.00 2.52
2617 2702 7.855375 ACATGACCAGATGAAGAAGAATAGAA 58.145 34.615 0.00 0.00 0.00 2.10
2618 2703 7.124750 TGACATGACCAGATGAAGAAGAATAGA 59.875 37.037 0.00 0.00 0.00 1.98
2619 2704 7.270779 TGACATGACCAGATGAAGAAGAATAG 58.729 38.462 0.00 0.00 0.00 1.73
2620 2705 7.186570 TGACATGACCAGATGAAGAAGAATA 57.813 36.000 0.00 0.00 0.00 1.75
2621 2706 6.058553 TGACATGACCAGATGAAGAAGAAT 57.941 37.500 0.00 0.00 0.00 2.40
2622 2707 5.488262 TGACATGACCAGATGAAGAAGAA 57.512 39.130 0.00 0.00 0.00 2.52
2623 2708 5.488262 TTGACATGACCAGATGAAGAAGA 57.512 39.130 0.00 0.00 0.00 2.87
2624 2709 5.646793 ACATTGACATGACCAGATGAAGAAG 59.353 40.000 0.00 0.00 34.11 2.85
2625 2710 5.413523 CACATTGACATGACCAGATGAAGAA 59.586 40.000 0.00 0.00 34.11 2.52
2626 2711 4.939439 CACATTGACATGACCAGATGAAGA 59.061 41.667 0.00 0.00 34.11 2.87
2627 2712 4.939439 TCACATTGACATGACCAGATGAAG 59.061 41.667 0.00 0.00 34.11 3.02
2657 2743 3.726517 CCAACCCGCGCAAGACAG 61.727 66.667 8.75 0.00 43.02 3.51
2663 2749 4.652131 AATGGACCAACCCGCGCA 62.652 61.111 8.75 0.00 38.00 6.09
2741 2830 7.114754 ACCCCAATATAATATCAGCACATGAG 58.885 38.462 0.00 0.00 42.53 2.90
2742 2831 7.031415 ACCCCAATATAATATCAGCACATGA 57.969 36.000 0.00 0.00 43.70 3.07
2743 2832 7.707624 AACCCCAATATAATATCAGCACATG 57.292 36.000 0.00 0.00 0.00 3.21
2744 2833 9.821240 TTTAACCCCAATATAATATCAGCACAT 57.179 29.630 0.00 0.00 0.00 3.21
2745 2834 9.821240 ATTTAACCCCAATATAATATCAGCACA 57.179 29.630 0.00 0.00 0.00 4.57
2750 2839 9.041354 GGCCAATTTAACCCCAATATAATATCA 57.959 33.333 0.00 0.00 0.00 2.15
2751 2840 9.041354 TGGCCAATTTAACCCCAATATAATATC 57.959 33.333 0.61 0.00 0.00 1.63
2752 2841 8.980832 TGGCCAATTTAACCCCAATATAATAT 57.019 30.769 0.61 0.00 0.00 1.28
2753 2842 8.820831 CATGGCCAATTTAACCCCAATATAATA 58.179 33.333 10.96 0.00 0.00 0.98
2757 2846 4.974501 ACATGGCCAATTTAACCCCAATAT 59.025 37.500 10.96 0.00 0.00 1.28
2818 2909 7.546316 GGAGACCAAGACTAGAAATAGTCAAAC 59.454 40.741 15.67 4.85 46.62 2.93
2819 2910 7.455008 AGGAGACCAAGACTAGAAATAGTCAAA 59.545 37.037 15.67 0.00 46.62 2.69
2826 2918 6.234177 CAAACAGGAGACCAAGACTAGAAAT 58.766 40.000 0.00 0.00 0.00 2.17
2855 2947 5.048083 TGAAACCACATTTCCAAGTATGAGC 60.048 40.000 0.00 0.00 45.40 4.26
2861 2953 6.165577 GCATTATGAAACCACATTTCCAAGT 58.834 36.000 0.00 0.00 45.40 3.16
2862 2954 6.164876 TGCATTATGAAACCACATTTCCAAG 58.835 36.000 0.00 0.00 45.40 3.61
2863 2955 6.106648 TGCATTATGAAACCACATTTCCAA 57.893 33.333 0.00 0.00 45.40 3.53
2864 2956 5.245751 ACTGCATTATGAAACCACATTTCCA 59.754 36.000 0.00 0.00 45.40 3.53
2865 2957 5.723295 ACTGCATTATGAAACCACATTTCC 58.277 37.500 0.00 0.00 45.40 3.13
2866 2958 7.312154 TGTACTGCATTATGAAACCACATTTC 58.688 34.615 0.00 0.00 46.07 2.17
2867 2959 7.225784 TGTACTGCATTATGAAACCACATTT 57.774 32.000 0.00 0.00 0.00 2.32
2868 2960 6.832520 TGTACTGCATTATGAAACCACATT 57.167 33.333 0.00 0.00 0.00 2.71
2869 2961 8.696043 ATATGTACTGCATTATGAAACCACAT 57.304 30.769 0.00 1.44 38.94 3.21
2870 2962 9.271828 CTATATGTACTGCATTATGAAACCACA 57.728 33.333 0.00 0.00 38.94 4.17
2871 2963 9.489084 TCTATATGTACTGCATTATGAAACCAC 57.511 33.333 0.00 0.00 38.94 4.16
2907 2999 1.600485 CGTGTGGGCGTTAGACTTTTT 59.400 47.619 0.00 0.00 0.00 1.94
3188 3281 1.133809 AGCTTTGGGTGTGGGCTAGA 61.134 55.000 0.00 0.00 0.00 2.43
3232 3325 2.434702 GCTAGGGCAGTTACCATGTACT 59.565 50.000 0.00 0.00 38.54 2.73
3241 3334 2.224769 ACAAGCAAAGCTAGGGCAGTTA 60.225 45.455 6.90 0.00 38.25 2.24
3375 3473 3.834732 CTTACAAGCACGCTAGGGT 57.165 52.632 6.62 6.62 0.00 4.34
3391 3489 1.350351 AGAGAGAGTTGCCATGTGCTT 59.650 47.619 7.54 0.00 42.00 3.91
3445 3544 2.476185 GCAGTTGCCATTTAGCACTACG 60.476 50.000 0.00 0.00 43.97 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.