Multiple sequence alignment - TraesCS3D01G148200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G148200 chr3D 100.000 3230 0 0 1 3230 112959872 112963101 0.000000e+00 5965
1 TraesCS3D01G148200 chr3B 90.388 2632 128 52 571 3138 167864211 167861641 0.000000e+00 3343
2 TraesCS3D01G148200 chr3B 85.777 457 37 10 26 456 168097701 168097247 2.940000e-125 459
3 TraesCS3D01G148200 chr2B 86.246 2283 156 62 573 2790 137856813 137854624 0.000000e+00 2331
4 TraesCS3D01G148200 chr2B 91.038 212 9 2 2815 3026 137854353 137854152 8.830000e-71 278
5 TraesCS3D01G148200 chr2D 86.550 2052 151 44 769 2748 85759079 85757081 0.000000e+00 2145
6 TraesCS3D01G148200 chr2D 84.615 221 22 6 2933 3147 85733462 85733248 3.270000e-50 209
7 TraesCS3D01G148200 chr2D 86.979 192 11 4 2744 2926 85756817 85756631 1.520000e-48 204
8 TraesCS3D01G148200 chr3A 85.783 2068 168 72 598 2599 108729305 108731312 0.000000e+00 2074
9 TraesCS3D01G148200 chr3A 87.770 139 4 7 2799 2928 108731926 108732060 2.010000e-32 150
10 TraesCS3D01G148200 chr3A 86.301 146 7 5 2669 2801 108731446 108731591 2.600000e-31 147
11 TraesCS3D01G148200 chr3A 75.740 169 30 8 1199 1360 526508643 526508807 1.240000e-09 75
12 TraesCS3D01G148200 chr2A 86.436 1939 152 40 767 2642 86271886 86269996 0.000000e+00 2021
13 TraesCS3D01G148200 chr2A 88.806 134 9 3 2693 2821 86267303 86267171 3.340000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G148200 chr3D 112959872 112963101 3229 False 5965.000000 5965 100.0000 1 3230 1 chr3D.!!$F1 3229
1 TraesCS3D01G148200 chr3B 167861641 167864211 2570 True 3343.000000 3343 90.3880 571 3138 1 chr3B.!!$R1 2567
2 TraesCS3D01G148200 chr2B 137854152 137856813 2661 True 1304.500000 2331 88.6420 573 3026 2 chr2B.!!$R1 2453
3 TraesCS3D01G148200 chr2D 85756631 85759079 2448 True 1174.500000 2145 86.7645 769 2926 2 chr2D.!!$R2 2157
4 TraesCS3D01G148200 chr3A 108729305 108732060 2755 False 790.333333 2074 86.6180 598 2928 3 chr3A.!!$F2 2330
5 TraesCS3D01G148200 chr2A 86267171 86271886 4715 True 1090.000000 2021 87.6210 767 2821 2 chr2A.!!$R1 2054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 508 0.036952 ACCGGCATTGTCAGTGAGAG 60.037 55.0 0.0 0.0 0.0 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2533 0.036164 CACCATCACACCCCGAAGAA 59.964 55.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.151663 CATCATAAGGAATCCAAACATGCA 57.848 37.500 0.61 0.00 0.00 3.96
24 25 6.575267 CATCATAAGGAATCCAAACATGCAA 58.425 36.000 0.61 0.00 0.00 4.08
25 26 6.602410 TCATAAGGAATCCAAACATGCAAA 57.398 33.333 0.61 0.00 0.00 3.68
26 27 7.185318 TCATAAGGAATCCAAACATGCAAAT 57.815 32.000 0.61 0.00 0.00 2.32
27 28 7.042950 TCATAAGGAATCCAAACATGCAAATG 58.957 34.615 0.61 0.00 0.00 2.32
28 29 5.486735 AAGGAATCCAAACATGCAAATGA 57.513 34.783 0.61 0.00 0.00 2.57
29 30 5.486735 AGGAATCCAAACATGCAAATGAA 57.513 34.783 0.61 0.00 0.00 2.57
30 31 5.867330 AGGAATCCAAACATGCAAATGAAA 58.133 33.333 0.61 0.00 0.00 2.69
31 32 5.702209 AGGAATCCAAACATGCAAATGAAAC 59.298 36.000 0.61 0.00 0.00 2.78
32 33 5.469421 GGAATCCAAACATGCAAATGAAACA 59.531 36.000 0.00 0.00 0.00 2.83
33 34 6.149807 GGAATCCAAACATGCAAATGAAACAT 59.850 34.615 0.00 0.00 0.00 2.71
34 35 7.333921 GGAATCCAAACATGCAAATGAAACATA 59.666 33.333 0.00 0.00 0.00 2.29
35 36 8.618702 AATCCAAACATGCAAATGAAACATAA 57.381 26.923 0.00 0.00 0.00 1.90
36 37 8.618702 ATCCAAACATGCAAATGAAACATAAA 57.381 26.923 0.00 0.00 0.00 1.40
37 38 7.859598 TCCAAACATGCAAATGAAACATAAAC 58.140 30.769 0.00 0.00 0.00 2.01
38 39 7.714377 TCCAAACATGCAAATGAAACATAAACT 59.286 29.630 0.00 0.00 0.00 2.66
39 40 7.799447 CCAAACATGCAAATGAAACATAAACTG 59.201 33.333 0.00 0.00 0.00 3.16
40 41 7.424227 AACATGCAAATGAAACATAAACTGG 57.576 32.000 0.00 0.00 0.00 4.00
41 42 6.757237 ACATGCAAATGAAACATAAACTGGA 58.243 32.000 0.00 0.00 0.00 3.86
42 43 7.215789 ACATGCAAATGAAACATAAACTGGAA 58.784 30.769 0.00 0.00 0.00 3.53
43 44 7.879160 ACATGCAAATGAAACATAAACTGGAAT 59.121 29.630 0.00 0.00 0.00 3.01
44 45 8.723311 CATGCAAATGAAACATAAACTGGAATT 58.277 29.630 0.00 0.00 0.00 2.17
45 46 8.674263 TGCAAATGAAACATAAACTGGAATTT 57.326 26.923 0.00 0.00 0.00 1.82
46 47 8.772705 TGCAAATGAAACATAAACTGGAATTTC 58.227 29.630 0.00 0.00 0.00 2.17
47 48 8.772705 GCAAATGAAACATAAACTGGAATTTCA 58.227 29.630 0.00 0.00 39.58 2.69
92 93 9.468532 AAATTTGAAAGTCTCAAGATAAAGCAC 57.531 29.630 0.00 0.00 44.84 4.40
93 94 5.845985 TGAAAGTCTCAAGATAAAGCACG 57.154 39.130 0.00 0.00 0.00 5.34
94 95 5.538118 TGAAAGTCTCAAGATAAAGCACGA 58.462 37.500 0.00 0.00 0.00 4.35
95 96 5.635280 TGAAAGTCTCAAGATAAAGCACGAG 59.365 40.000 0.00 0.00 0.00 4.18
96 97 5.392767 AAGTCTCAAGATAAAGCACGAGA 57.607 39.130 0.00 0.00 0.00 4.04
97 98 5.590530 AGTCTCAAGATAAAGCACGAGAT 57.409 39.130 0.00 0.00 32.56 2.75
98 99 5.347342 AGTCTCAAGATAAAGCACGAGATG 58.653 41.667 0.00 0.00 32.56 2.90
99 100 5.126222 AGTCTCAAGATAAAGCACGAGATGA 59.874 40.000 0.00 0.00 32.56 2.92
100 101 5.458452 GTCTCAAGATAAAGCACGAGATGAG 59.542 44.000 0.00 0.00 32.56 2.90
101 102 5.126222 TCTCAAGATAAAGCACGAGATGAGT 59.874 40.000 0.00 0.00 34.77 3.41
102 103 5.724328 TCAAGATAAAGCACGAGATGAGTT 58.276 37.500 0.00 0.00 0.00 3.01
103 104 5.578336 TCAAGATAAAGCACGAGATGAGTTG 59.422 40.000 0.00 0.00 0.00 3.16
104 105 5.330455 AGATAAAGCACGAGATGAGTTGA 57.670 39.130 0.00 0.00 0.00 3.18
105 106 5.347342 AGATAAAGCACGAGATGAGTTGAG 58.653 41.667 0.00 0.00 0.00 3.02
106 107 3.393089 AAAGCACGAGATGAGTTGAGT 57.607 42.857 0.00 0.00 0.00 3.41
107 108 2.360553 AGCACGAGATGAGTTGAGTG 57.639 50.000 0.00 0.00 0.00 3.51
108 109 1.615883 AGCACGAGATGAGTTGAGTGT 59.384 47.619 0.00 0.00 32.74 3.55
109 110 1.989165 GCACGAGATGAGTTGAGTGTC 59.011 52.381 0.00 0.00 32.74 3.67
110 111 2.600731 CACGAGATGAGTTGAGTGTCC 58.399 52.381 0.00 0.00 0.00 4.02
111 112 1.546476 ACGAGATGAGTTGAGTGTCCC 59.454 52.381 0.00 0.00 0.00 4.46
112 113 1.134965 CGAGATGAGTTGAGTGTCCCC 60.135 57.143 0.00 0.00 0.00 4.81
113 114 1.208293 GAGATGAGTTGAGTGTCCCCC 59.792 57.143 0.00 0.00 0.00 5.40
114 115 0.108138 GATGAGTTGAGTGTCCCCCG 60.108 60.000 0.00 0.00 0.00 5.73
115 116 2.047179 GAGTTGAGTGTCCCCCGC 60.047 66.667 0.00 0.00 0.00 6.13
116 117 2.847234 AGTTGAGTGTCCCCCGCA 60.847 61.111 0.00 0.00 0.00 5.69
117 118 2.668550 GTTGAGTGTCCCCCGCAC 60.669 66.667 0.00 0.00 37.13 5.34
118 119 3.948719 TTGAGTGTCCCCCGCACC 61.949 66.667 0.00 0.00 37.56 5.01
119 120 4.954118 TGAGTGTCCCCCGCACCT 62.954 66.667 0.00 0.00 37.56 4.00
120 121 4.394712 GAGTGTCCCCCGCACCTG 62.395 72.222 0.00 0.00 37.56 4.00
131 132 3.106552 GCACCTGCGTGTCACAAA 58.893 55.556 3.42 0.00 42.39 2.83
132 133 1.654220 GCACCTGCGTGTCACAAAT 59.346 52.632 3.42 0.00 42.39 2.32
133 134 0.385974 GCACCTGCGTGTCACAAATC 60.386 55.000 3.42 0.00 42.39 2.17
134 135 0.110688 CACCTGCGTGTCACAAATCG 60.111 55.000 3.42 0.00 35.10 3.34
136 137 1.154413 CTGCGTGTCACAAATCGCC 60.154 57.895 8.62 0.00 46.57 5.54
137 138 1.568612 CTGCGTGTCACAAATCGCCT 61.569 55.000 8.62 0.00 46.57 5.52
138 139 1.132640 GCGTGTCACAAATCGCCTC 59.867 57.895 3.42 0.00 42.33 4.70
139 140 1.565156 GCGTGTCACAAATCGCCTCA 61.565 55.000 3.42 0.00 42.33 3.86
140 141 0.163788 CGTGTCACAAATCGCCTCAC 59.836 55.000 3.42 0.00 0.00 3.51
141 142 1.512926 GTGTCACAAATCGCCTCACT 58.487 50.000 0.00 0.00 0.00 3.41
142 143 2.683968 GTGTCACAAATCGCCTCACTA 58.316 47.619 0.00 0.00 0.00 2.74
143 144 3.262420 GTGTCACAAATCGCCTCACTAT 58.738 45.455 0.00 0.00 0.00 2.12
144 145 3.684788 GTGTCACAAATCGCCTCACTATT 59.315 43.478 0.00 0.00 0.00 1.73
145 146 3.684305 TGTCACAAATCGCCTCACTATTG 59.316 43.478 0.00 0.00 0.00 1.90
146 147 2.677836 TCACAAATCGCCTCACTATTGC 59.322 45.455 0.00 0.00 0.00 3.56
147 148 2.679837 CACAAATCGCCTCACTATTGCT 59.320 45.455 0.00 0.00 0.00 3.91
148 149 3.871006 CACAAATCGCCTCACTATTGCTA 59.129 43.478 0.00 0.00 0.00 3.49
149 150 3.871594 ACAAATCGCCTCACTATTGCTAC 59.128 43.478 0.00 0.00 0.00 3.58
150 151 2.821991 ATCGCCTCACTATTGCTACC 57.178 50.000 0.00 0.00 0.00 3.18
151 152 0.750850 TCGCCTCACTATTGCTACCC 59.249 55.000 0.00 0.00 0.00 3.69
152 153 0.464036 CGCCTCACTATTGCTACCCA 59.536 55.000 0.00 0.00 0.00 4.51
153 154 1.539065 CGCCTCACTATTGCTACCCAG 60.539 57.143 0.00 0.00 0.00 4.45
154 155 1.486726 GCCTCACTATTGCTACCCAGT 59.513 52.381 0.00 0.00 0.00 4.00
155 156 2.698797 GCCTCACTATTGCTACCCAGTA 59.301 50.000 0.00 0.00 0.00 2.74
156 157 3.325135 GCCTCACTATTGCTACCCAGTAT 59.675 47.826 0.00 0.00 0.00 2.12
157 158 4.202367 GCCTCACTATTGCTACCCAGTATT 60.202 45.833 0.00 0.00 0.00 1.89
158 159 5.300752 CCTCACTATTGCTACCCAGTATTG 58.699 45.833 0.00 0.00 0.00 1.90
159 160 4.703897 TCACTATTGCTACCCAGTATTGC 58.296 43.478 0.00 0.00 0.00 3.56
160 161 4.408921 TCACTATTGCTACCCAGTATTGCT 59.591 41.667 0.00 0.00 0.00 3.91
161 162 4.752101 CACTATTGCTACCCAGTATTGCTC 59.248 45.833 0.00 0.00 0.00 4.26
162 163 4.656112 ACTATTGCTACCCAGTATTGCTCT 59.344 41.667 0.00 0.00 0.00 4.09
163 164 2.988010 TGCTACCCAGTATTGCTCTG 57.012 50.000 0.00 0.00 0.00 3.35
164 165 2.466846 TGCTACCCAGTATTGCTCTGA 58.533 47.619 0.00 0.00 35.20 3.27
165 166 2.432146 TGCTACCCAGTATTGCTCTGAG 59.568 50.000 0.00 0.00 35.20 3.35
166 167 2.804933 GCTACCCAGTATTGCTCTGAGC 60.805 54.545 22.38 22.38 42.82 4.26
167 168 1.577736 ACCCAGTATTGCTCTGAGCT 58.422 50.000 28.04 13.30 42.97 4.09
168 169 1.912043 ACCCAGTATTGCTCTGAGCTT 59.088 47.619 28.04 18.35 42.97 3.74
169 170 2.307098 ACCCAGTATTGCTCTGAGCTTT 59.693 45.455 28.04 18.03 42.97 3.51
170 171 2.681848 CCCAGTATTGCTCTGAGCTTTG 59.318 50.000 28.04 17.77 42.97 2.77
171 172 3.603532 CCAGTATTGCTCTGAGCTTTGA 58.396 45.455 28.04 13.23 42.97 2.69
172 173 4.197750 CCAGTATTGCTCTGAGCTTTGAT 58.802 43.478 28.04 18.29 42.97 2.57
173 174 4.272991 CCAGTATTGCTCTGAGCTTTGATC 59.727 45.833 28.04 14.27 42.97 2.92
174 175 5.117584 CAGTATTGCTCTGAGCTTTGATCT 58.882 41.667 28.04 15.96 42.97 2.75
175 176 5.006844 CAGTATTGCTCTGAGCTTTGATCTG 59.993 44.000 28.04 21.63 42.97 2.90
176 177 2.398252 TGCTCTGAGCTTTGATCTGG 57.602 50.000 28.04 0.00 42.97 3.86
177 178 1.015868 GCTCTGAGCTTTGATCTGGC 58.984 55.000 21.93 0.00 38.45 4.85
178 179 1.666054 CTCTGAGCTTTGATCTGGCC 58.334 55.000 0.00 0.00 0.00 5.36
179 180 0.986527 TCTGAGCTTTGATCTGGCCA 59.013 50.000 4.71 4.71 0.00 5.36
180 181 1.562942 TCTGAGCTTTGATCTGGCCAT 59.437 47.619 5.51 0.00 0.00 4.40
181 182 1.676529 CTGAGCTTTGATCTGGCCATG 59.323 52.381 5.51 0.00 0.00 3.66
182 183 1.005097 TGAGCTTTGATCTGGCCATGT 59.995 47.619 5.51 0.00 0.00 3.21
183 184 2.239402 TGAGCTTTGATCTGGCCATGTA 59.761 45.455 5.51 0.00 0.00 2.29
184 185 3.282021 GAGCTTTGATCTGGCCATGTAA 58.718 45.455 5.51 0.00 0.00 2.41
185 186 3.696051 GAGCTTTGATCTGGCCATGTAAA 59.304 43.478 5.51 5.18 0.00 2.01
186 187 4.088634 AGCTTTGATCTGGCCATGTAAAA 58.911 39.130 5.51 4.75 0.00 1.52
187 188 4.159135 AGCTTTGATCTGGCCATGTAAAAG 59.841 41.667 5.51 15.30 0.00 2.27
188 189 4.427312 CTTTGATCTGGCCATGTAAAAGC 58.573 43.478 5.51 0.00 0.00 3.51
193 194 1.427819 GGCCATGTAAAAGCCGTCG 59.572 57.895 0.00 0.00 36.84 5.12
194 195 1.303091 GGCCATGTAAAAGCCGTCGT 61.303 55.000 0.00 0.00 36.84 4.34
195 196 0.519961 GCCATGTAAAAGCCGTCGTT 59.480 50.000 0.00 0.00 0.00 3.85
196 197 1.068816 GCCATGTAAAAGCCGTCGTTT 60.069 47.619 0.00 0.00 0.00 3.60
197 198 2.606065 GCCATGTAAAAGCCGTCGTTTT 60.606 45.455 0.00 0.00 0.00 2.43
198 199 2.977169 CCATGTAAAAGCCGTCGTTTTG 59.023 45.455 4.36 0.00 0.00 2.44
199 200 2.759538 TGTAAAAGCCGTCGTTTTGG 57.240 45.000 4.36 0.00 0.00 3.28
200 201 2.286872 TGTAAAAGCCGTCGTTTTGGA 58.713 42.857 4.36 0.00 0.00 3.53
201 202 2.031930 TGTAAAAGCCGTCGTTTTGGAC 59.968 45.455 4.36 2.55 0.00 4.02
218 219 2.121645 ACGAGGTGTCCGTCAAAGT 58.878 52.632 0.00 0.00 34.97 2.66
219 220 0.462789 ACGAGGTGTCCGTCAAAGTT 59.537 50.000 0.00 0.00 34.97 2.66
220 221 1.134610 ACGAGGTGTCCGTCAAAGTTT 60.135 47.619 0.00 0.00 34.97 2.66
221 222 1.937899 CGAGGTGTCCGTCAAAGTTTT 59.062 47.619 0.00 0.00 0.00 2.43
222 223 2.286184 CGAGGTGTCCGTCAAAGTTTTG 60.286 50.000 0.00 0.00 39.48 2.44
223 224 2.940410 GAGGTGTCCGTCAAAGTTTTGA 59.060 45.455 3.28 3.28 44.31 2.69
288 289 6.724263 TGATCCACATTTAAATACACATCGC 58.276 36.000 0.00 0.00 0.00 4.58
289 290 5.150342 TCCACATTTAAATACACATCGCG 57.850 39.130 0.00 0.00 0.00 5.87
290 291 4.870991 TCCACATTTAAATACACATCGCGA 59.129 37.500 13.09 13.09 0.00 5.87
291 292 5.351740 TCCACATTTAAATACACATCGCGAA 59.648 36.000 15.24 0.00 0.00 4.70
292 293 6.037720 TCCACATTTAAATACACATCGCGAAT 59.962 34.615 15.24 0.36 0.00 3.34
293 294 7.224949 TCCACATTTAAATACACATCGCGAATA 59.775 33.333 15.24 3.88 0.00 1.75
294 295 7.853437 CCACATTTAAATACACATCGCGAATAA 59.147 33.333 15.24 0.00 0.00 1.40
295 296 9.216087 CACATTTAAATACACATCGCGAATAAA 57.784 29.630 15.24 9.10 0.00 1.40
296 297 9.433317 ACATTTAAATACACATCGCGAATAAAG 57.567 29.630 15.24 4.25 0.00 1.85
297 298 8.891928 CATTTAAATACACATCGCGAATAAAGG 58.108 33.333 15.24 7.01 0.00 3.11
298 299 4.468095 AATACACATCGCGAATAAAGGC 57.532 40.909 15.24 0.00 0.00 4.35
299 300 2.024176 ACACATCGCGAATAAAGGCT 57.976 45.000 15.24 0.00 0.00 4.58
300 301 1.665679 ACACATCGCGAATAAAGGCTG 59.334 47.619 15.24 6.73 0.00 4.85
301 302 1.933181 CACATCGCGAATAAAGGCTGA 59.067 47.619 15.24 0.00 0.00 4.26
302 303 2.351418 CACATCGCGAATAAAGGCTGAA 59.649 45.455 15.24 0.00 0.00 3.02
303 304 2.609459 ACATCGCGAATAAAGGCTGAAG 59.391 45.455 15.24 0.00 0.00 3.02
304 305 2.380084 TCGCGAATAAAGGCTGAAGT 57.620 45.000 6.20 0.00 0.00 3.01
305 306 2.695359 TCGCGAATAAAGGCTGAAGTT 58.305 42.857 6.20 0.00 0.00 2.66
306 307 3.071479 TCGCGAATAAAGGCTGAAGTTT 58.929 40.909 6.20 0.00 0.00 2.66
307 308 3.500680 TCGCGAATAAAGGCTGAAGTTTT 59.499 39.130 6.20 0.00 0.00 2.43
308 309 4.023536 TCGCGAATAAAGGCTGAAGTTTTT 60.024 37.500 6.20 0.00 0.00 1.94
309 310 4.088496 CGCGAATAAAGGCTGAAGTTTTTG 59.912 41.667 0.00 0.00 0.00 2.44
310 311 4.982295 GCGAATAAAGGCTGAAGTTTTTGT 59.018 37.500 0.00 0.00 0.00 2.83
311 312 5.462068 GCGAATAAAGGCTGAAGTTTTTGTT 59.538 36.000 0.00 0.00 0.00 2.83
312 313 6.562086 GCGAATAAAGGCTGAAGTTTTTGTTG 60.562 38.462 0.00 0.00 0.00 3.33
313 314 6.695278 CGAATAAAGGCTGAAGTTTTTGTTGA 59.305 34.615 0.00 0.00 0.00 3.18
314 315 7.221838 CGAATAAAGGCTGAAGTTTTTGTTGAA 59.778 33.333 0.00 0.00 0.00 2.69
315 316 8.424274 AATAAAGGCTGAAGTTTTTGTTGAAG 57.576 30.769 0.00 0.00 0.00 3.02
316 317 5.659440 AAGGCTGAAGTTTTTGTTGAAGA 57.341 34.783 0.00 0.00 0.00 2.87
317 318 5.859205 AGGCTGAAGTTTTTGTTGAAGAT 57.141 34.783 0.00 0.00 0.00 2.40
318 319 5.594926 AGGCTGAAGTTTTTGTTGAAGATG 58.405 37.500 0.00 0.00 0.00 2.90
319 320 4.209911 GGCTGAAGTTTTTGTTGAAGATGC 59.790 41.667 0.00 0.00 0.00 3.91
320 321 4.805192 GCTGAAGTTTTTGTTGAAGATGCA 59.195 37.500 0.00 0.00 0.00 3.96
321 322 5.051240 GCTGAAGTTTTTGTTGAAGATGCAG 60.051 40.000 0.00 0.00 0.00 4.41
322 323 5.964758 TGAAGTTTTTGTTGAAGATGCAGT 58.035 33.333 0.00 0.00 0.00 4.40
323 324 5.806502 TGAAGTTTTTGTTGAAGATGCAGTG 59.193 36.000 0.00 0.00 0.00 3.66
324 325 4.685924 AGTTTTTGTTGAAGATGCAGTGG 58.314 39.130 0.00 0.00 0.00 4.00
325 326 4.402155 AGTTTTTGTTGAAGATGCAGTGGA 59.598 37.500 0.00 0.00 0.00 4.02
326 327 4.572985 TTTTGTTGAAGATGCAGTGGAG 57.427 40.909 0.00 0.00 0.00 3.86
327 328 3.490439 TTGTTGAAGATGCAGTGGAGA 57.510 42.857 0.00 0.00 0.00 3.71
328 329 3.490439 TGTTGAAGATGCAGTGGAGAA 57.510 42.857 0.00 0.00 0.00 2.87
329 330 3.405831 TGTTGAAGATGCAGTGGAGAAG 58.594 45.455 0.00 0.00 0.00 2.85
330 331 3.071457 TGTTGAAGATGCAGTGGAGAAGA 59.929 43.478 0.00 0.00 0.00 2.87
331 332 4.067896 GTTGAAGATGCAGTGGAGAAGAA 58.932 43.478 0.00 0.00 0.00 2.52
332 333 3.668447 TGAAGATGCAGTGGAGAAGAAC 58.332 45.455 0.00 0.00 0.00 3.01
333 334 3.071457 TGAAGATGCAGTGGAGAAGAACA 59.929 43.478 0.00 0.00 0.00 3.18
334 335 3.331478 AGATGCAGTGGAGAAGAACAG 57.669 47.619 0.00 0.00 0.00 3.16
335 336 2.902486 AGATGCAGTGGAGAAGAACAGA 59.098 45.455 0.00 0.00 0.00 3.41
336 337 3.326006 AGATGCAGTGGAGAAGAACAGAA 59.674 43.478 0.00 0.00 0.00 3.02
337 338 3.117491 TGCAGTGGAGAAGAACAGAAG 57.883 47.619 0.00 0.00 0.00 2.85
338 339 2.700371 TGCAGTGGAGAAGAACAGAAGA 59.300 45.455 0.00 0.00 0.00 2.87
339 340 3.134623 TGCAGTGGAGAAGAACAGAAGAA 59.865 43.478 0.00 0.00 0.00 2.52
340 341 3.745458 GCAGTGGAGAAGAACAGAAGAAG 59.255 47.826 0.00 0.00 0.00 2.85
341 342 4.742138 GCAGTGGAGAAGAACAGAAGAAGT 60.742 45.833 0.00 0.00 0.00 3.01
342 343 4.749099 CAGTGGAGAAGAACAGAAGAAGTG 59.251 45.833 0.00 0.00 0.00 3.16
343 344 4.407296 AGTGGAGAAGAACAGAAGAAGTGT 59.593 41.667 0.00 0.00 0.00 3.55
344 345 4.747605 GTGGAGAAGAACAGAAGAAGTGTC 59.252 45.833 0.00 0.00 0.00 3.67
345 346 4.202264 TGGAGAAGAACAGAAGAAGTGTCC 60.202 45.833 0.00 0.00 0.00 4.02
346 347 4.039852 GGAGAAGAACAGAAGAAGTGTCCT 59.960 45.833 0.00 0.00 0.00 3.85
347 348 5.208463 AGAAGAACAGAAGAAGTGTCCTC 57.792 43.478 0.00 0.00 0.00 3.71
348 349 3.651803 AGAACAGAAGAAGTGTCCTCG 57.348 47.619 0.00 0.00 0.00 4.63
349 350 2.062519 GAACAGAAGAAGTGTCCTCGC 58.937 52.381 0.00 0.00 0.00 5.03
350 351 0.318762 ACAGAAGAAGTGTCCTCGCC 59.681 55.000 0.00 0.00 0.00 5.54
351 352 0.318441 CAGAAGAAGTGTCCTCGCCA 59.682 55.000 0.00 0.00 0.00 5.69
352 353 1.066573 CAGAAGAAGTGTCCTCGCCAT 60.067 52.381 0.00 0.00 0.00 4.40
353 354 2.166459 CAGAAGAAGTGTCCTCGCCATA 59.834 50.000 0.00 0.00 0.00 2.74
354 355 3.034635 AGAAGAAGTGTCCTCGCCATAT 58.965 45.455 0.00 0.00 0.00 1.78
355 356 3.068873 AGAAGAAGTGTCCTCGCCATATC 59.931 47.826 0.00 0.00 0.00 1.63
356 357 1.689273 AGAAGTGTCCTCGCCATATCC 59.311 52.381 0.00 0.00 0.00 2.59
357 358 0.389391 AAGTGTCCTCGCCATATCCG 59.611 55.000 0.00 0.00 0.00 4.18
358 359 0.467474 AGTGTCCTCGCCATATCCGA 60.467 55.000 0.00 0.00 0.00 4.55
359 360 0.603569 GTGTCCTCGCCATATCCGAT 59.396 55.000 0.00 0.00 33.83 4.18
360 361 0.888619 TGTCCTCGCCATATCCGATC 59.111 55.000 0.00 0.00 33.83 3.69
361 362 0.888619 GTCCTCGCCATATCCGATCA 59.111 55.000 0.00 0.00 33.83 2.92
362 363 1.478510 GTCCTCGCCATATCCGATCAT 59.521 52.381 0.00 0.00 33.83 2.45
363 364 2.688446 GTCCTCGCCATATCCGATCATA 59.312 50.000 0.00 0.00 33.83 2.15
364 365 2.688446 TCCTCGCCATATCCGATCATAC 59.312 50.000 0.00 0.00 33.83 2.39
365 366 2.427095 CCTCGCCATATCCGATCATACA 59.573 50.000 0.00 0.00 33.83 2.29
366 367 3.068732 CCTCGCCATATCCGATCATACAT 59.931 47.826 0.00 0.00 33.83 2.29
367 368 4.045636 TCGCCATATCCGATCATACATG 57.954 45.455 0.00 0.00 0.00 3.21
368 369 3.447229 TCGCCATATCCGATCATACATGT 59.553 43.478 2.69 2.69 0.00 3.21
369 370 3.553105 CGCCATATCCGATCATACATGTG 59.447 47.826 9.11 0.00 0.00 3.21
370 371 4.677779 CGCCATATCCGATCATACATGTGA 60.678 45.833 9.11 0.00 0.00 3.58
371 372 4.807834 GCCATATCCGATCATACATGTGAG 59.192 45.833 9.11 0.30 0.00 3.51
372 373 4.807834 CCATATCCGATCATACATGTGAGC 59.192 45.833 9.11 0.00 0.00 4.26
373 374 5.413499 CATATCCGATCATACATGTGAGCA 58.587 41.667 9.11 0.00 34.30 4.26
374 375 4.548451 ATCCGATCATACATGTGAGCAT 57.452 40.909 9.11 0.00 34.30 3.79
375 376 3.917988 TCCGATCATACATGTGAGCATC 58.082 45.455 9.11 3.95 34.30 3.91
389 390 3.765381 TGAGCATCATCCTTTGGAAACA 58.235 40.909 0.00 0.00 42.56 2.83
390 391 4.151121 TGAGCATCATCCTTTGGAAACAA 58.849 39.130 0.00 0.00 45.99 2.83
401 402 2.292103 TGGAAACAAAAGCAGTGCAC 57.708 45.000 19.20 9.40 37.44 4.57
402 403 1.547820 TGGAAACAAAAGCAGTGCACA 59.452 42.857 21.04 0.00 37.44 4.57
403 404 2.168106 TGGAAACAAAAGCAGTGCACAT 59.832 40.909 21.04 0.89 37.44 3.21
404 405 3.197265 GGAAACAAAAGCAGTGCACATT 58.803 40.909 21.04 7.90 0.00 2.71
405 406 3.001533 GGAAACAAAAGCAGTGCACATTG 59.998 43.478 21.04 19.48 0.00 2.82
406 407 3.523606 AACAAAAGCAGTGCACATTGA 57.476 38.095 24.98 0.00 0.00 2.57
407 408 3.088194 ACAAAAGCAGTGCACATTGAG 57.912 42.857 24.98 13.44 0.00 3.02
408 409 2.689471 ACAAAAGCAGTGCACATTGAGA 59.311 40.909 24.98 0.00 0.00 3.27
409 410 3.319972 ACAAAAGCAGTGCACATTGAGAT 59.680 39.130 24.98 8.25 0.00 2.75
410 411 3.570926 AAAGCAGTGCACATTGAGATG 57.429 42.857 21.04 7.65 39.25 2.90
411 412 2.484742 AGCAGTGCACATTGAGATGA 57.515 45.000 21.04 0.00 36.73 2.92
412 413 3.000684 AGCAGTGCACATTGAGATGAT 57.999 42.857 21.04 1.79 36.73 2.45
413 414 3.353557 AGCAGTGCACATTGAGATGATT 58.646 40.909 21.04 0.00 36.73 2.57
414 415 3.762288 AGCAGTGCACATTGAGATGATTT 59.238 39.130 21.04 0.00 36.73 2.17
415 416 4.219944 AGCAGTGCACATTGAGATGATTTT 59.780 37.500 21.04 0.00 36.73 1.82
416 417 4.326278 GCAGTGCACATTGAGATGATTTTG 59.674 41.667 21.04 4.06 36.73 2.44
417 418 4.862574 CAGTGCACATTGAGATGATTTTGG 59.137 41.667 21.04 0.00 36.73 3.28
418 419 4.768448 AGTGCACATTGAGATGATTTTGGA 59.232 37.500 21.04 0.00 36.73 3.53
419 420 5.244402 AGTGCACATTGAGATGATTTTGGAA 59.756 36.000 21.04 0.00 36.73 3.53
420 421 5.575606 GTGCACATTGAGATGATTTTGGAAG 59.424 40.000 13.17 0.00 36.73 3.46
421 422 5.107133 GCACATTGAGATGATTTTGGAAGG 58.893 41.667 0.00 0.00 36.73 3.46
422 423 5.105635 GCACATTGAGATGATTTTGGAAGGA 60.106 40.000 0.00 0.00 36.73 3.36
423 424 6.561614 CACATTGAGATGATTTTGGAAGGAG 58.438 40.000 0.00 0.00 36.73 3.69
424 425 6.376299 CACATTGAGATGATTTTGGAAGGAGA 59.624 38.462 0.00 0.00 36.73 3.71
425 426 6.950041 ACATTGAGATGATTTTGGAAGGAGAA 59.050 34.615 0.00 0.00 36.73 2.87
426 427 7.122353 ACATTGAGATGATTTTGGAAGGAGAAG 59.878 37.037 0.00 0.00 36.73 2.85
427 428 6.131972 TGAGATGATTTTGGAAGGAGAAGT 57.868 37.500 0.00 0.00 0.00 3.01
428 429 6.176183 TGAGATGATTTTGGAAGGAGAAGTC 58.824 40.000 0.00 0.00 0.00 3.01
429 430 6.013032 TGAGATGATTTTGGAAGGAGAAGTCT 60.013 38.462 0.00 0.00 0.00 3.24
430 431 6.788218 AGATGATTTTGGAAGGAGAAGTCTT 58.212 36.000 0.00 0.00 0.00 3.01
431 432 6.658391 AGATGATTTTGGAAGGAGAAGTCTTG 59.342 38.462 0.00 0.00 0.00 3.02
432 433 5.694995 TGATTTTGGAAGGAGAAGTCTTGT 58.305 37.500 0.00 0.00 0.00 3.16
433 434 6.129179 TGATTTTGGAAGGAGAAGTCTTGTT 58.871 36.000 0.00 0.00 0.00 2.83
434 435 6.263168 TGATTTTGGAAGGAGAAGTCTTGTTC 59.737 38.462 0.00 0.00 0.00 3.18
435 436 4.771114 TTGGAAGGAGAAGTCTTGTTCA 57.229 40.909 0.00 0.00 0.00 3.18
436 437 4.342862 TGGAAGGAGAAGTCTTGTTCAG 57.657 45.455 0.00 0.00 0.00 3.02
437 438 3.711704 TGGAAGGAGAAGTCTTGTTCAGT 59.288 43.478 0.00 0.00 0.00 3.41
438 439 4.164221 TGGAAGGAGAAGTCTTGTTCAGTT 59.836 41.667 0.00 0.00 0.00 3.16
439 440 4.513318 GGAAGGAGAAGTCTTGTTCAGTTG 59.487 45.833 0.00 0.00 0.00 3.16
440 441 4.762289 AGGAGAAGTCTTGTTCAGTTGT 57.238 40.909 0.00 0.00 0.00 3.32
441 442 5.104259 AGGAGAAGTCTTGTTCAGTTGTT 57.896 39.130 0.00 0.00 0.00 2.83
442 443 5.119694 AGGAGAAGTCTTGTTCAGTTGTTC 58.880 41.667 0.00 0.00 0.00 3.18
443 444 4.876107 GGAGAAGTCTTGTTCAGTTGTTCA 59.124 41.667 0.00 0.00 0.00 3.18
444 445 5.220681 GGAGAAGTCTTGTTCAGTTGTTCAC 60.221 44.000 0.00 0.00 0.00 3.18
445 446 4.636206 AGAAGTCTTGTTCAGTTGTTCACC 59.364 41.667 0.00 0.00 0.00 4.02
446 447 2.936498 AGTCTTGTTCAGTTGTTCACCG 59.064 45.455 0.00 0.00 0.00 4.94
447 448 2.933906 GTCTTGTTCAGTTGTTCACCGA 59.066 45.455 0.00 0.00 0.00 4.69
448 449 3.372822 GTCTTGTTCAGTTGTTCACCGAA 59.627 43.478 0.00 0.00 0.00 4.30
449 450 3.621268 TCTTGTTCAGTTGTTCACCGAAG 59.379 43.478 0.00 0.00 0.00 3.79
450 451 2.980568 TGTTCAGTTGTTCACCGAAGT 58.019 42.857 0.00 0.00 0.00 3.01
451 452 3.340034 TGTTCAGTTGTTCACCGAAGTT 58.660 40.909 0.00 0.00 0.00 2.66
452 453 3.754323 TGTTCAGTTGTTCACCGAAGTTT 59.246 39.130 0.00 0.00 0.00 2.66
453 454 4.216687 TGTTCAGTTGTTCACCGAAGTTTT 59.783 37.500 0.00 0.00 0.00 2.43
454 455 5.158494 GTTCAGTTGTTCACCGAAGTTTTT 58.842 37.500 0.00 0.00 0.00 1.94
473 474 2.805546 GCAGCTGCATGTGGGATG 59.194 61.111 33.36 0.00 41.59 3.51
474 475 1.751544 GCAGCTGCATGTGGGATGA 60.752 57.895 33.36 0.00 41.59 2.92
475 476 1.317431 GCAGCTGCATGTGGGATGAA 61.317 55.000 33.36 0.00 41.59 2.57
476 477 1.399714 CAGCTGCATGTGGGATGAAT 58.600 50.000 0.00 0.00 0.00 2.57
477 478 2.578786 CAGCTGCATGTGGGATGAATA 58.421 47.619 0.00 0.00 0.00 1.75
478 479 2.292569 CAGCTGCATGTGGGATGAATAC 59.707 50.000 0.00 0.00 0.00 1.89
479 480 1.265095 GCTGCATGTGGGATGAATACG 59.735 52.381 0.00 0.00 0.00 3.06
480 481 2.837498 CTGCATGTGGGATGAATACGA 58.163 47.619 0.00 0.00 0.00 3.43
481 482 2.545526 CTGCATGTGGGATGAATACGAC 59.454 50.000 0.00 0.00 0.00 4.34
482 483 1.526887 GCATGTGGGATGAATACGACG 59.473 52.381 0.00 0.00 0.00 5.12
483 484 2.821546 CATGTGGGATGAATACGACGT 58.178 47.619 5.52 5.52 0.00 4.34
484 485 2.287393 TGTGGGATGAATACGACGTG 57.713 50.000 11.56 0.00 0.00 4.49
485 486 1.546923 TGTGGGATGAATACGACGTGT 59.453 47.619 11.56 0.00 0.00 4.49
486 487 1.924524 GTGGGATGAATACGACGTGTG 59.075 52.381 11.56 0.00 0.00 3.82
487 488 1.134936 TGGGATGAATACGACGTGTGG 60.135 52.381 11.56 0.00 0.00 4.17
488 489 1.135527 GGGATGAATACGACGTGTGGA 59.864 52.381 11.56 0.00 0.00 4.02
489 490 2.190981 GGATGAATACGACGTGTGGAC 58.809 52.381 11.56 0.62 0.00 4.02
490 491 2.190981 GATGAATACGACGTGTGGACC 58.809 52.381 11.56 0.00 0.00 4.46
491 492 0.109643 TGAATACGACGTGTGGACCG 60.110 55.000 11.56 0.00 0.00 4.79
492 493 0.799534 GAATACGACGTGTGGACCGG 60.800 60.000 11.56 0.00 0.00 5.28
493 494 2.824071 AATACGACGTGTGGACCGGC 62.824 60.000 11.56 0.00 0.00 6.13
495 496 4.735132 CGACGTGTGGACCGGCAT 62.735 66.667 0.00 0.00 31.12 4.40
496 497 2.358247 GACGTGTGGACCGGCATT 60.358 61.111 0.00 0.00 32.28 3.56
497 498 2.668212 ACGTGTGGACCGGCATTG 60.668 61.111 0.00 0.00 0.00 2.82
498 499 2.668212 CGTGTGGACCGGCATTGT 60.668 61.111 0.00 0.00 0.00 2.71
499 500 2.677003 CGTGTGGACCGGCATTGTC 61.677 63.158 0.00 0.00 0.00 3.18
500 501 1.599518 GTGTGGACCGGCATTGTCA 60.600 57.895 0.00 0.00 34.36 3.58
501 502 1.302431 TGTGGACCGGCATTGTCAG 60.302 57.895 0.00 0.00 34.36 3.51
502 503 1.302511 GTGGACCGGCATTGTCAGT 60.303 57.895 0.00 0.00 34.36 3.41
503 504 1.302431 TGGACCGGCATTGTCAGTG 60.302 57.895 0.00 0.00 34.36 3.66
504 505 1.003839 GGACCGGCATTGTCAGTGA 60.004 57.895 0.00 0.00 34.36 3.41
505 506 1.021390 GGACCGGCATTGTCAGTGAG 61.021 60.000 0.00 0.00 34.36 3.51
506 507 0.037326 GACCGGCATTGTCAGTGAGA 60.037 55.000 0.00 0.00 32.91 3.27
507 508 0.036952 ACCGGCATTGTCAGTGAGAG 60.037 55.000 0.00 0.00 0.00 3.20
508 509 0.036952 CCGGCATTGTCAGTGAGAGT 60.037 55.000 0.00 0.00 0.00 3.24
509 510 1.204704 CCGGCATTGTCAGTGAGAGTA 59.795 52.381 0.00 0.00 0.00 2.59
510 511 2.263077 CGGCATTGTCAGTGAGAGTAC 58.737 52.381 0.00 0.00 0.00 2.73
511 512 2.263077 GGCATTGTCAGTGAGAGTACG 58.737 52.381 0.00 0.00 0.00 3.67
512 513 2.094700 GGCATTGTCAGTGAGAGTACGA 60.095 50.000 0.00 0.00 0.00 3.43
513 514 3.575630 GCATTGTCAGTGAGAGTACGAA 58.424 45.455 0.00 0.00 0.00 3.85
514 515 4.177026 GCATTGTCAGTGAGAGTACGAAT 58.823 43.478 0.00 0.00 0.00 3.34
515 516 4.627467 GCATTGTCAGTGAGAGTACGAATT 59.373 41.667 0.00 0.00 0.00 2.17
516 517 5.220303 GCATTGTCAGTGAGAGTACGAATTC 60.220 44.000 0.00 0.00 0.00 2.17
517 518 5.447624 TTGTCAGTGAGAGTACGAATTCA 57.552 39.130 6.22 0.00 0.00 2.57
518 519 5.447624 TGTCAGTGAGAGTACGAATTCAA 57.552 39.130 6.22 0.00 0.00 2.69
519 520 5.461526 TGTCAGTGAGAGTACGAATTCAAG 58.538 41.667 6.22 0.00 0.00 3.02
520 521 4.859798 GTCAGTGAGAGTACGAATTCAAGG 59.140 45.833 6.22 0.00 0.00 3.61
521 522 4.523173 TCAGTGAGAGTACGAATTCAAGGT 59.477 41.667 6.22 0.00 0.00 3.50
522 523 5.010719 TCAGTGAGAGTACGAATTCAAGGTT 59.989 40.000 6.22 0.00 0.00 3.50
523 524 5.696724 CAGTGAGAGTACGAATTCAAGGTTT 59.303 40.000 6.22 0.00 0.00 3.27
524 525 6.202954 CAGTGAGAGTACGAATTCAAGGTTTT 59.797 38.462 6.22 0.00 0.00 2.43
525 526 6.766467 AGTGAGAGTACGAATTCAAGGTTTTT 59.234 34.615 6.22 0.00 0.00 1.94
554 555 8.654230 TTGACTTTATACTCTGATGAATCTGC 57.346 34.615 0.00 0.00 0.00 4.26
555 556 7.785033 TGACTTTATACTCTGATGAATCTGCA 58.215 34.615 0.00 0.00 0.00 4.41
556 557 7.924947 TGACTTTATACTCTGATGAATCTGCAG 59.075 37.037 7.63 7.63 0.00 4.41
557 558 8.016301 ACTTTATACTCTGATGAATCTGCAGA 57.984 34.615 20.79 20.79 37.17 4.26
561 562 1.140452 TCTGATGAATCTGCAGAGGGC 59.860 52.381 22.96 13.66 45.13 5.19
621 622 3.589654 TTCGCTCCCGCCACTTCAG 62.590 63.158 0.00 0.00 0.00 3.02
694 727 0.686112 GTGACCTCCCCCTCTCTCTG 60.686 65.000 0.00 0.00 0.00 3.35
711 744 4.614475 TCTCTGCCTTCCTATTTCTCTCA 58.386 43.478 0.00 0.00 0.00 3.27
736 769 1.070577 GCATAGGCATAGCACGTTTCG 60.071 52.381 0.00 0.00 40.72 3.46
743 776 1.578023 CATAGCACGTTTCGAGTCGTC 59.422 52.381 13.12 3.96 38.23 4.20
763 797 0.106217 CCTCTCTCCTCTGTCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
791 825 0.253044 TTGCCCGATTTAGCTCAGCT 59.747 50.000 3.60 3.60 43.41 4.24
872 919 2.608752 GGAACGTGAGCTAAAACGAGGA 60.609 50.000 19.42 0.00 42.32 3.71
887 939 1.403249 CGAGGACCGTACAATTTCCGT 60.403 52.381 0.00 0.00 32.97 4.69
888 940 2.265683 GAGGACCGTACAATTTCCGTC 58.734 52.381 0.00 0.00 32.97 4.79
889 941 1.619827 AGGACCGTACAATTTCCGTCA 59.380 47.619 0.00 0.00 32.97 4.35
890 942 1.728425 GGACCGTACAATTTCCGTCAC 59.272 52.381 0.00 0.00 0.00 3.67
891 943 1.387756 GACCGTACAATTTCCGTCACG 59.612 52.381 0.00 0.00 0.00 4.35
913 965 1.366366 CGGCCCGGACCTACATTAG 59.634 63.158 4.86 0.00 0.00 1.73
1765 1884 1.351017 TGATTTCCTCGCCTCCAAAGT 59.649 47.619 0.00 0.00 0.00 2.66
1769 1888 2.467566 TCCTCGCCTCCAAAGTAAAC 57.532 50.000 0.00 0.00 0.00 2.01
1960 2092 3.136123 CATTGCCACCCCTCGCAG 61.136 66.667 0.00 0.00 36.14 5.18
1980 2112 8.112099 TCGCAGTTACTACTATTTCGAAATTC 57.888 34.615 27.10 9.00 31.96 2.17
2015 2152 6.478344 CACCTTCCGAATTCAATTCAAAACAA 59.522 34.615 10.76 0.00 39.22 2.83
2076 2235 2.548280 CGAATGCTCAGCTCATCAGGAT 60.548 50.000 0.00 0.00 0.00 3.24
2242 2418 1.822186 TCGTGATCGAGATCCGGCA 60.822 57.895 17.33 0.00 41.35 5.69
2244 2420 1.437573 GTGATCGAGATCCGGCACA 59.562 57.895 10.24 8.54 40.77 4.57
2293 2473 2.420642 CTGTTCTTCTTGCTGCTGCTA 58.579 47.619 17.00 8.35 40.48 3.49
2294 2474 2.146342 TGTTCTTCTTGCTGCTGCTAC 58.854 47.619 17.00 4.48 40.48 3.58
2295 2475 2.224378 TGTTCTTCTTGCTGCTGCTACT 60.224 45.455 17.00 0.00 40.48 2.57
2296 2476 2.090400 TCTTCTTGCTGCTGCTACTG 57.910 50.000 17.00 4.56 40.48 2.74
2297 2477 0.447011 CTTCTTGCTGCTGCTACTGC 59.553 55.000 17.00 1.02 40.48 4.40
2298 2478 0.035881 TTCTTGCTGCTGCTACTGCT 59.964 50.000 17.00 0.00 40.48 4.24
2299 2479 0.672711 TCTTGCTGCTGCTACTGCTG 60.673 55.000 17.00 0.00 40.48 4.41
2339 2530 1.622312 TGCATTGGCTTGGTTTGCATA 59.378 42.857 0.00 0.00 38.32 3.14
2340 2531 2.236644 TGCATTGGCTTGGTTTGCATAT 59.763 40.909 0.00 0.00 38.32 1.78
2341 2532 3.450096 TGCATTGGCTTGGTTTGCATATA 59.550 39.130 0.00 0.00 38.32 0.86
2342 2533 4.101274 TGCATTGGCTTGGTTTGCATATAT 59.899 37.500 0.00 0.00 38.32 0.86
2363 2567 0.673644 CTTCGGGGTGTGATGGTGTC 60.674 60.000 0.00 0.00 0.00 3.67
2475 2680 6.127619 CCACTTCCCCTGATCTGTAATTTTTC 60.128 42.308 0.00 0.00 0.00 2.29
2487 2692 4.094476 TGTAATTTTTCCCCCGGCATTTA 58.906 39.130 0.00 0.00 0.00 1.40
2558 2766 1.079612 GTTCCATTGCTTGGCTGGC 60.080 57.895 0.00 0.00 46.01 4.85
2569 2778 2.159324 GCTTGGCTGGCTTTGTTCTATC 60.159 50.000 2.00 0.00 0.00 2.08
2669 2982 5.734720 CATGTAAGGTTCATGTGTAGGAGT 58.265 41.667 0.00 0.00 38.17 3.85
2670 2983 6.873997 CATGTAAGGTTCATGTGTAGGAGTA 58.126 40.000 0.00 0.00 38.17 2.59
2671 2984 6.525578 TGTAAGGTTCATGTGTAGGAGTAG 57.474 41.667 0.00 0.00 0.00 2.57
2672 2985 5.421056 TGTAAGGTTCATGTGTAGGAGTAGG 59.579 44.000 0.00 0.00 0.00 3.18
2725 5675 0.394938 TTACGGTGTCACATGCAGGT 59.605 50.000 0.00 0.00 0.00 4.00
2761 5986 0.955428 GTGAAGCGAACATGCAGGGA 60.955 55.000 2.31 0.00 37.31 4.20
2901 6714 2.996153 TGCCGGCTGTACCCGTAA 60.996 61.111 29.70 0.00 46.71 3.18
2902 6715 2.202837 GCCGGCTGTACCCGTAAG 60.203 66.667 22.15 0.00 46.71 2.34
2903 6716 3.010413 GCCGGCTGTACCCGTAAGT 62.010 63.158 22.15 0.00 46.71 2.24
2904 6717 1.666209 GCCGGCTGTACCCGTAAGTA 61.666 60.000 22.15 0.00 46.71 2.24
2928 6742 2.358247 CGCCGGTGCAAGTTACCT 60.358 61.111 0.00 0.00 37.32 3.08
2929 6743 2.388232 CGCCGGTGCAAGTTACCTC 61.388 63.158 0.00 0.00 37.32 3.85
2937 6751 1.745489 CAAGTTACCTCGCCCCTGC 60.745 63.158 0.00 0.00 0.00 4.85
2938 6752 2.967946 AAGTTACCTCGCCCCTGCC 61.968 63.158 0.00 0.00 0.00 4.85
2939 6753 3.712907 GTTACCTCGCCCCTGCCA 61.713 66.667 0.00 0.00 0.00 4.92
2940 6754 3.712907 TTACCTCGCCCCTGCCAC 61.713 66.667 0.00 0.00 0.00 5.01
2941 6755 4.715130 TACCTCGCCCCTGCCACT 62.715 66.667 0.00 0.00 0.00 4.00
2974 6788 0.828022 TTGGGTCTGGCGTACATAGG 59.172 55.000 0.00 0.00 0.00 2.57
3058 6872 1.953686 ACAGTTTGGACAAATCCCACG 59.046 47.619 0.34 0.00 45.59 4.94
3065 6879 0.965363 GACAAATCCCACGCCACCAT 60.965 55.000 0.00 0.00 0.00 3.55
3066 6880 1.250154 ACAAATCCCACGCCACCATG 61.250 55.000 0.00 0.00 0.00 3.66
3067 6881 2.350458 AAATCCCACGCCACCATGC 61.350 57.895 0.00 0.00 0.00 4.06
3068 6882 4.820744 ATCCCACGCCACCATGCC 62.821 66.667 0.00 0.00 0.00 4.40
3071 6885 4.054825 CCACGCCACCATGCCAAC 62.055 66.667 0.00 0.00 0.00 3.77
3072 6886 3.293714 CACGCCACCATGCCAACA 61.294 61.111 0.00 0.00 0.00 3.33
3073 6887 2.520500 ACGCCACCATGCCAACAA 60.521 55.556 0.00 0.00 0.00 2.83
3074 6888 1.907807 ACGCCACCATGCCAACAAT 60.908 52.632 0.00 0.00 0.00 2.71
3075 6889 1.446445 CGCCACCATGCCAACAATG 60.446 57.895 0.00 0.00 0.00 2.82
3097 6911 5.989477 TGGATTATTGGATTGAGACTCGTT 58.011 37.500 0.00 0.00 0.00 3.85
3149 6963 4.628963 GGTTTTCTACCAGGACTTACCA 57.371 45.455 0.00 0.00 46.92 3.25
3150 6964 5.175388 GGTTTTCTACCAGGACTTACCAT 57.825 43.478 0.00 0.00 46.92 3.55
3151 6965 4.941873 GGTTTTCTACCAGGACTTACCATG 59.058 45.833 0.00 0.00 46.92 3.66
3152 6966 5.514310 GGTTTTCTACCAGGACTTACCATGT 60.514 44.000 0.00 0.00 46.92 3.21
3153 6967 5.416271 TTTCTACCAGGACTTACCATGTC 57.584 43.478 0.00 0.00 42.04 3.06
3165 6979 6.777213 ACTTACCATGTCCTAGTAGAAGTG 57.223 41.667 0.00 0.00 0.00 3.16
3166 6980 6.254522 ACTTACCATGTCCTAGTAGAAGTGT 58.745 40.000 0.00 0.00 0.00 3.55
3167 6981 6.724905 ACTTACCATGTCCTAGTAGAAGTGTT 59.275 38.462 0.00 0.00 0.00 3.32
3168 6982 7.234988 ACTTACCATGTCCTAGTAGAAGTGTTT 59.765 37.037 0.00 0.00 0.00 2.83
3169 6983 6.435292 ACCATGTCCTAGTAGAAGTGTTTT 57.565 37.500 0.00 0.00 0.00 2.43
3170 6984 6.465084 ACCATGTCCTAGTAGAAGTGTTTTC 58.535 40.000 0.00 0.00 0.00 2.29
3171 6985 5.577164 CCATGTCCTAGTAGAAGTGTTTTCG 59.423 44.000 0.00 0.00 0.00 3.46
3172 6986 4.553323 TGTCCTAGTAGAAGTGTTTTCGC 58.447 43.478 0.00 0.00 0.00 4.70
3173 6987 4.038282 TGTCCTAGTAGAAGTGTTTTCGCA 59.962 41.667 0.00 0.00 0.00 5.10
3174 6988 4.986659 GTCCTAGTAGAAGTGTTTTCGCAA 59.013 41.667 0.00 0.00 0.00 4.85
3175 6989 5.464389 GTCCTAGTAGAAGTGTTTTCGCAAA 59.536 40.000 0.00 0.00 0.00 3.68
3176 6990 6.018507 GTCCTAGTAGAAGTGTTTTCGCAAAA 60.019 38.462 0.00 0.00 0.00 2.44
3177 6991 6.539464 TCCTAGTAGAAGTGTTTTCGCAAAAA 59.461 34.615 0.00 0.00 31.13 1.94
3204 7018 9.702494 AGTAAAATGTCCTAGTAACAGTAACAC 57.298 33.333 2.19 0.05 0.00 3.32
3205 7019 9.702494 GTAAAATGTCCTAGTAACAGTAACACT 57.298 33.333 2.19 0.00 0.00 3.55
3207 7021 8.603242 AAATGTCCTAGTAACAGTAACACTTG 57.397 34.615 2.19 0.00 0.00 3.16
3208 7022 5.535333 TGTCCTAGTAACAGTAACACTTGC 58.465 41.667 0.00 0.00 0.00 4.01
3209 7023 5.069383 TGTCCTAGTAACAGTAACACTTGCA 59.931 40.000 0.00 0.00 0.00 4.08
3210 7024 6.164176 GTCCTAGTAACAGTAACACTTGCAT 58.836 40.000 0.00 0.00 0.00 3.96
3211 7025 6.649557 GTCCTAGTAACAGTAACACTTGCATT 59.350 38.462 0.00 0.00 0.00 3.56
3212 7026 7.172703 GTCCTAGTAACAGTAACACTTGCATTT 59.827 37.037 0.00 0.00 0.00 2.32
3213 7027 7.717875 TCCTAGTAACAGTAACACTTGCATTTT 59.282 33.333 0.00 0.00 0.00 1.82
3214 7028 8.349983 CCTAGTAACAGTAACACTTGCATTTTT 58.650 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.795144 TTGCATGTTTGGATTCCTTATGAT 57.205 33.333 3.95 0.00 0.00 2.45
2 3 6.602410 TTTGCATGTTTGGATTCCTTATGA 57.398 33.333 3.95 0.00 0.00 2.15
4 5 7.185318 TCATTTGCATGTTTGGATTCCTTAT 57.815 32.000 3.95 0.00 0.00 1.73
5 6 6.602410 TCATTTGCATGTTTGGATTCCTTA 57.398 33.333 3.95 0.00 0.00 2.69
6 7 5.486735 TCATTTGCATGTTTGGATTCCTT 57.513 34.783 3.95 0.00 0.00 3.36
7 8 5.486735 TTCATTTGCATGTTTGGATTCCT 57.513 34.783 3.95 0.00 0.00 3.36
9 10 6.542574 TGTTTCATTTGCATGTTTGGATTC 57.457 33.333 0.00 0.00 0.00 2.52
10 11 8.618702 TTATGTTTCATTTGCATGTTTGGATT 57.381 26.923 0.00 0.00 0.00 3.01
11 12 8.505625 GTTTATGTTTCATTTGCATGTTTGGAT 58.494 29.630 0.00 0.00 0.00 3.41
12 13 7.714377 AGTTTATGTTTCATTTGCATGTTTGGA 59.286 29.630 0.00 0.00 0.00 3.53
13 14 7.799447 CAGTTTATGTTTCATTTGCATGTTTGG 59.201 33.333 0.00 0.00 0.00 3.28
14 15 7.799447 CCAGTTTATGTTTCATTTGCATGTTTG 59.201 33.333 0.00 0.00 0.00 2.93
15 16 7.714377 TCCAGTTTATGTTTCATTTGCATGTTT 59.286 29.630 0.00 0.00 0.00 2.83
16 17 7.215789 TCCAGTTTATGTTTCATTTGCATGTT 58.784 30.769 0.00 0.00 0.00 2.71
17 18 6.757237 TCCAGTTTATGTTTCATTTGCATGT 58.243 32.000 0.00 0.00 0.00 3.21
18 19 7.655236 TTCCAGTTTATGTTTCATTTGCATG 57.345 32.000 0.00 0.00 0.00 4.06
19 20 8.851541 AATTCCAGTTTATGTTTCATTTGCAT 57.148 26.923 0.00 0.00 0.00 3.96
20 21 8.674263 AAATTCCAGTTTATGTTTCATTTGCA 57.326 26.923 0.00 0.00 0.00 4.08
21 22 8.772705 TGAAATTCCAGTTTATGTTTCATTTGC 58.227 29.630 0.00 0.00 30.60 3.68
66 67 9.468532 GTGCTTTATCTTGAGACTTTCAAATTT 57.531 29.630 0.00 0.00 44.84 1.82
67 68 7.805071 CGTGCTTTATCTTGAGACTTTCAAATT 59.195 33.333 0.00 0.00 44.84 1.82
68 69 7.173218 TCGTGCTTTATCTTGAGACTTTCAAAT 59.827 33.333 0.00 0.00 44.84 2.32
69 70 6.481976 TCGTGCTTTATCTTGAGACTTTCAAA 59.518 34.615 0.00 0.00 44.84 2.69
70 71 5.989168 TCGTGCTTTATCTTGAGACTTTCAA 59.011 36.000 0.00 0.00 43.40 2.69
71 72 5.538118 TCGTGCTTTATCTTGAGACTTTCA 58.462 37.500 0.00 0.00 0.00 2.69
72 73 5.864474 TCTCGTGCTTTATCTTGAGACTTTC 59.136 40.000 0.00 0.00 0.00 2.62
73 74 5.784177 TCTCGTGCTTTATCTTGAGACTTT 58.216 37.500 0.00 0.00 0.00 2.66
74 75 5.392767 TCTCGTGCTTTATCTTGAGACTT 57.607 39.130 0.00 0.00 0.00 3.01
75 76 5.126222 TCATCTCGTGCTTTATCTTGAGACT 59.874 40.000 0.00 0.00 35.52 3.24
76 77 5.344066 TCATCTCGTGCTTTATCTTGAGAC 58.656 41.667 0.00 0.00 35.52 3.36
77 78 5.126222 ACTCATCTCGTGCTTTATCTTGAGA 59.874 40.000 0.00 0.00 36.95 3.27
78 79 5.347342 ACTCATCTCGTGCTTTATCTTGAG 58.653 41.667 0.00 0.00 35.40 3.02
79 80 5.330455 ACTCATCTCGTGCTTTATCTTGA 57.670 39.130 0.00 0.00 0.00 3.02
80 81 5.578336 TCAACTCATCTCGTGCTTTATCTTG 59.422 40.000 0.00 0.00 0.00 3.02
81 82 5.724328 TCAACTCATCTCGTGCTTTATCTT 58.276 37.500 0.00 0.00 0.00 2.40
82 83 5.105554 ACTCAACTCATCTCGTGCTTTATCT 60.106 40.000 0.00 0.00 0.00 1.98
83 84 5.005203 CACTCAACTCATCTCGTGCTTTATC 59.995 44.000 0.00 0.00 0.00 1.75
84 85 4.867047 CACTCAACTCATCTCGTGCTTTAT 59.133 41.667 0.00 0.00 0.00 1.40
85 86 4.237724 CACTCAACTCATCTCGTGCTTTA 58.762 43.478 0.00 0.00 0.00 1.85
86 87 3.062763 CACTCAACTCATCTCGTGCTTT 58.937 45.455 0.00 0.00 0.00 3.51
87 88 2.036475 ACACTCAACTCATCTCGTGCTT 59.964 45.455 0.00 0.00 0.00 3.91
88 89 1.615883 ACACTCAACTCATCTCGTGCT 59.384 47.619 0.00 0.00 0.00 4.40
89 90 1.989165 GACACTCAACTCATCTCGTGC 59.011 52.381 0.00 0.00 0.00 5.34
90 91 2.600731 GGACACTCAACTCATCTCGTG 58.399 52.381 0.00 0.00 0.00 4.35
91 92 1.546476 GGGACACTCAACTCATCTCGT 59.454 52.381 0.00 0.00 0.00 4.18
92 93 1.134965 GGGGACACTCAACTCATCTCG 60.135 57.143 0.00 0.00 0.00 4.04
93 94 1.208293 GGGGGACACTCAACTCATCTC 59.792 57.143 0.00 0.00 0.00 2.75
94 95 1.280457 GGGGGACACTCAACTCATCT 58.720 55.000 0.00 0.00 0.00 2.90
95 96 0.108138 CGGGGGACACTCAACTCATC 60.108 60.000 0.00 0.00 0.00 2.92
96 97 1.983224 CGGGGGACACTCAACTCAT 59.017 57.895 0.00 0.00 0.00 2.90
97 98 2.879233 GCGGGGGACACTCAACTCA 61.879 63.158 0.00 0.00 0.00 3.41
98 99 2.047179 GCGGGGGACACTCAACTC 60.047 66.667 0.00 0.00 0.00 3.01
99 100 2.847234 TGCGGGGGACACTCAACT 60.847 61.111 0.00 0.00 0.00 3.16
100 101 2.668550 GTGCGGGGGACACTCAAC 60.669 66.667 0.00 0.00 35.12 3.18
101 102 3.948719 GGTGCGGGGGACACTCAA 61.949 66.667 0.00 0.00 38.14 3.02
102 103 4.954118 AGGTGCGGGGGACACTCA 62.954 66.667 0.00 0.00 38.14 3.41
103 104 4.394712 CAGGTGCGGGGGACACTC 62.395 72.222 0.00 0.00 38.14 3.51
116 117 2.234613 CGATTTGTGACACGCAGGT 58.765 52.632 0.22 0.00 0.00 4.00
121 122 0.163788 GTGAGGCGATTTGTGACACG 59.836 55.000 0.22 0.00 0.00 4.49
122 123 1.512926 AGTGAGGCGATTTGTGACAC 58.487 50.000 0.00 0.00 0.00 3.67
123 124 3.610040 ATAGTGAGGCGATTTGTGACA 57.390 42.857 0.00 0.00 0.00 3.58
124 125 3.485877 GCAATAGTGAGGCGATTTGTGAC 60.486 47.826 0.00 0.00 0.00 3.67
125 126 2.677836 GCAATAGTGAGGCGATTTGTGA 59.322 45.455 0.00 0.00 0.00 3.58
126 127 2.679837 AGCAATAGTGAGGCGATTTGTG 59.320 45.455 0.00 0.00 0.00 3.33
127 128 2.991250 AGCAATAGTGAGGCGATTTGT 58.009 42.857 0.00 0.00 0.00 2.83
128 129 3.248602 GGTAGCAATAGTGAGGCGATTTG 59.751 47.826 0.00 0.00 0.00 2.32
129 130 3.467803 GGTAGCAATAGTGAGGCGATTT 58.532 45.455 0.00 0.00 0.00 2.17
130 131 2.224305 GGGTAGCAATAGTGAGGCGATT 60.224 50.000 0.00 0.00 0.00 3.34
131 132 1.344763 GGGTAGCAATAGTGAGGCGAT 59.655 52.381 0.00 0.00 0.00 4.58
132 133 0.750850 GGGTAGCAATAGTGAGGCGA 59.249 55.000 0.00 0.00 0.00 5.54
133 134 0.464036 TGGGTAGCAATAGTGAGGCG 59.536 55.000 0.00 0.00 0.00 5.52
134 135 1.486726 ACTGGGTAGCAATAGTGAGGC 59.513 52.381 0.00 0.00 0.00 4.70
135 136 5.300752 CAATACTGGGTAGCAATAGTGAGG 58.699 45.833 0.00 0.00 0.00 3.86
136 137 4.752101 GCAATACTGGGTAGCAATAGTGAG 59.248 45.833 0.00 0.00 0.00 3.51
137 138 4.408921 AGCAATACTGGGTAGCAATAGTGA 59.591 41.667 0.00 0.00 0.00 3.41
138 139 4.708177 AGCAATACTGGGTAGCAATAGTG 58.292 43.478 0.00 0.00 0.00 2.74
139 140 4.656112 AGAGCAATACTGGGTAGCAATAGT 59.344 41.667 0.00 0.00 0.00 2.12
140 141 4.993584 CAGAGCAATACTGGGTAGCAATAG 59.006 45.833 0.00 0.00 0.00 1.73
141 142 4.653801 TCAGAGCAATACTGGGTAGCAATA 59.346 41.667 0.00 0.00 36.22 1.90
142 143 3.455910 TCAGAGCAATACTGGGTAGCAAT 59.544 43.478 0.00 0.00 36.22 3.56
143 144 2.837591 TCAGAGCAATACTGGGTAGCAA 59.162 45.455 0.00 0.00 36.22 3.91
144 145 2.432146 CTCAGAGCAATACTGGGTAGCA 59.568 50.000 0.00 0.00 36.22 3.49
145 146 2.804933 GCTCAGAGCAATACTGGGTAGC 60.805 54.545 18.17 0.00 41.89 3.58
146 147 2.697751 AGCTCAGAGCAATACTGGGTAG 59.302 50.000 24.64 0.00 45.56 3.18
147 148 2.752030 AGCTCAGAGCAATACTGGGTA 58.248 47.619 24.64 0.00 45.56 3.69
148 149 1.577736 AGCTCAGAGCAATACTGGGT 58.422 50.000 24.64 0.00 45.56 4.51
149 150 2.681848 CAAAGCTCAGAGCAATACTGGG 59.318 50.000 24.64 0.00 45.56 4.45
150 151 3.603532 TCAAAGCTCAGAGCAATACTGG 58.396 45.455 24.64 6.55 45.56 4.00
151 152 5.006844 CAGATCAAAGCTCAGAGCAATACTG 59.993 44.000 24.64 18.64 45.56 2.74
152 153 5.117584 CAGATCAAAGCTCAGAGCAATACT 58.882 41.667 24.64 12.03 45.56 2.12
153 154 4.272991 CCAGATCAAAGCTCAGAGCAATAC 59.727 45.833 24.64 10.09 45.56 1.89
154 155 4.449131 CCAGATCAAAGCTCAGAGCAATA 58.551 43.478 24.64 7.17 45.56 1.90
155 156 3.280295 CCAGATCAAAGCTCAGAGCAAT 58.720 45.455 24.64 9.99 45.56 3.56
156 157 2.708051 CCAGATCAAAGCTCAGAGCAA 58.292 47.619 24.64 7.19 45.56 3.91
157 158 1.678123 GCCAGATCAAAGCTCAGAGCA 60.678 52.381 24.64 3.73 45.56 4.26
158 159 1.015868 GCCAGATCAAAGCTCAGAGC 58.984 55.000 15.25 15.25 42.84 4.09
159 160 1.065636 TGGCCAGATCAAAGCTCAGAG 60.066 52.381 0.00 0.00 0.00 3.35
160 161 0.986527 TGGCCAGATCAAAGCTCAGA 59.013 50.000 0.00 0.00 0.00 3.27
161 162 1.676529 CATGGCCAGATCAAAGCTCAG 59.323 52.381 13.05 0.00 0.00 3.35
162 163 1.005097 ACATGGCCAGATCAAAGCTCA 59.995 47.619 13.05 0.00 0.00 4.26
163 164 1.760192 ACATGGCCAGATCAAAGCTC 58.240 50.000 13.05 0.00 0.00 4.09
164 165 3.370840 TTACATGGCCAGATCAAAGCT 57.629 42.857 13.05 0.00 0.00 3.74
165 166 4.427312 CTTTTACATGGCCAGATCAAAGC 58.573 43.478 13.05 0.00 0.00 3.51
166 167 4.427312 GCTTTTACATGGCCAGATCAAAG 58.573 43.478 13.05 17.09 0.00 2.77
167 168 3.195396 GGCTTTTACATGGCCAGATCAAA 59.805 43.478 13.05 7.16 44.69 2.69
168 169 2.760092 GGCTTTTACATGGCCAGATCAA 59.240 45.455 13.05 0.00 44.69 2.57
169 170 2.378038 GGCTTTTACATGGCCAGATCA 58.622 47.619 13.05 0.00 44.69 2.92
170 171 1.334869 CGGCTTTTACATGGCCAGATC 59.665 52.381 13.05 0.00 45.50 2.75
171 172 1.340991 ACGGCTTTTACATGGCCAGAT 60.341 47.619 13.05 3.79 45.50 2.90
172 173 0.037590 ACGGCTTTTACATGGCCAGA 59.962 50.000 13.05 0.00 45.50 3.86
173 174 0.451783 GACGGCTTTTACATGGCCAG 59.548 55.000 13.05 6.08 45.50 4.85
174 175 1.302383 CGACGGCTTTTACATGGCCA 61.302 55.000 8.56 8.56 45.50 5.36
175 176 1.303091 ACGACGGCTTTTACATGGCC 61.303 55.000 0.00 0.00 42.18 5.36
176 177 0.519961 AACGACGGCTTTTACATGGC 59.480 50.000 0.00 0.00 0.00 4.40
177 178 2.977169 CAAAACGACGGCTTTTACATGG 59.023 45.455 0.00 0.00 0.00 3.66
178 179 2.977169 CCAAAACGACGGCTTTTACATG 59.023 45.455 0.00 0.00 0.00 3.21
179 180 2.879646 TCCAAAACGACGGCTTTTACAT 59.120 40.909 0.00 0.00 0.00 2.29
180 181 2.031930 GTCCAAAACGACGGCTTTTACA 59.968 45.455 0.00 0.00 0.00 2.41
181 182 2.642995 GTCCAAAACGACGGCTTTTAC 58.357 47.619 0.00 0.00 0.00 2.01
183 184 3.930400 GTCCAAAACGACGGCTTTT 57.070 47.368 0.00 0.00 0.00 2.27
200 201 0.462789 AACTTTGACGGACACCTCGT 59.537 50.000 0.00 0.00 44.03 4.18
201 202 1.578583 AAACTTTGACGGACACCTCG 58.421 50.000 0.00 0.00 0.00 4.63
202 203 2.940410 TCAAAACTTTGACGGACACCTC 59.060 45.455 0.69 0.00 41.88 3.85
203 204 2.993937 TCAAAACTTTGACGGACACCT 58.006 42.857 0.69 0.00 41.88 4.00
248 249 9.479549 AATGTGGATCATTTACTAGACCAAAAT 57.520 29.630 0.00 0.00 43.33 1.82
249 250 8.877864 AATGTGGATCATTTACTAGACCAAAA 57.122 30.769 0.00 0.00 43.33 2.44
263 264 7.362662 GCGATGTGTATTTAAATGTGGATCAT 58.637 34.615 11.05 6.83 38.57 2.45
264 265 6.510960 CGCGATGTGTATTTAAATGTGGATCA 60.511 38.462 11.05 2.74 0.00 2.92
265 266 5.845953 CGCGATGTGTATTTAAATGTGGATC 59.154 40.000 11.05 6.51 0.00 3.36
266 267 5.525745 TCGCGATGTGTATTTAAATGTGGAT 59.474 36.000 3.71 0.00 0.00 3.41
267 268 4.870991 TCGCGATGTGTATTTAAATGTGGA 59.129 37.500 3.71 0.00 0.00 4.02
268 269 5.150342 TCGCGATGTGTATTTAAATGTGG 57.850 39.130 3.71 0.00 0.00 4.17
269 270 8.760703 TTATTCGCGATGTGTATTTAAATGTG 57.239 30.769 10.88 0.00 0.00 3.21
270 271 9.433317 CTTTATTCGCGATGTGTATTTAAATGT 57.567 29.630 10.88 0.00 0.00 2.71
271 272 8.891928 CCTTTATTCGCGATGTGTATTTAAATG 58.108 33.333 10.88 0.00 0.00 2.32
272 273 7.589954 GCCTTTATTCGCGATGTGTATTTAAAT 59.410 33.333 10.88 5.89 0.00 1.40
273 274 6.908284 GCCTTTATTCGCGATGTGTATTTAAA 59.092 34.615 10.88 0.00 0.00 1.52
274 275 6.259167 AGCCTTTATTCGCGATGTGTATTTAA 59.741 34.615 10.88 0.00 0.00 1.52
275 276 5.756347 AGCCTTTATTCGCGATGTGTATTTA 59.244 36.000 10.88 0.00 0.00 1.40
276 277 4.574828 AGCCTTTATTCGCGATGTGTATTT 59.425 37.500 10.88 0.00 0.00 1.40
277 278 4.024893 CAGCCTTTATTCGCGATGTGTATT 60.025 41.667 10.88 0.00 0.00 1.89
278 279 3.494626 CAGCCTTTATTCGCGATGTGTAT 59.505 43.478 10.88 1.82 0.00 2.29
279 280 2.863740 CAGCCTTTATTCGCGATGTGTA 59.136 45.455 10.88 0.00 0.00 2.90
280 281 1.665679 CAGCCTTTATTCGCGATGTGT 59.334 47.619 10.88 0.00 0.00 3.72
281 282 1.933181 TCAGCCTTTATTCGCGATGTG 59.067 47.619 10.88 0.00 0.00 3.21
282 283 2.309528 TCAGCCTTTATTCGCGATGT 57.690 45.000 10.88 4.45 0.00 3.06
283 284 2.609459 ACTTCAGCCTTTATTCGCGATG 59.391 45.455 10.88 2.02 0.00 3.84
284 285 2.906354 ACTTCAGCCTTTATTCGCGAT 58.094 42.857 10.88 2.60 0.00 4.58
285 286 2.380084 ACTTCAGCCTTTATTCGCGA 57.620 45.000 3.71 3.71 0.00 5.87
286 287 3.471495 AAACTTCAGCCTTTATTCGCG 57.529 42.857 0.00 0.00 0.00 5.87
287 288 4.982295 ACAAAAACTTCAGCCTTTATTCGC 59.018 37.500 0.00 0.00 0.00 4.70
288 289 6.695278 TCAACAAAAACTTCAGCCTTTATTCG 59.305 34.615 0.00 0.00 0.00 3.34
289 290 8.419076 TTCAACAAAAACTTCAGCCTTTATTC 57.581 30.769 0.00 0.00 0.00 1.75
290 291 8.257306 TCTTCAACAAAAACTTCAGCCTTTATT 58.743 29.630 0.00 0.00 0.00 1.40
291 292 7.781056 TCTTCAACAAAAACTTCAGCCTTTAT 58.219 30.769 0.00 0.00 0.00 1.40
292 293 7.164230 TCTTCAACAAAAACTTCAGCCTTTA 57.836 32.000 0.00 0.00 0.00 1.85
293 294 6.036577 TCTTCAACAAAAACTTCAGCCTTT 57.963 33.333 0.00 0.00 0.00 3.11
294 295 5.659440 TCTTCAACAAAAACTTCAGCCTT 57.341 34.783 0.00 0.00 0.00 4.35
295 296 5.594926 CATCTTCAACAAAAACTTCAGCCT 58.405 37.500 0.00 0.00 0.00 4.58
296 297 4.209911 GCATCTTCAACAAAAACTTCAGCC 59.790 41.667 0.00 0.00 0.00 4.85
297 298 4.805192 TGCATCTTCAACAAAAACTTCAGC 59.195 37.500 0.00 0.00 0.00 4.26
298 299 6.020121 CACTGCATCTTCAACAAAAACTTCAG 60.020 38.462 0.00 0.00 0.00 3.02
299 300 5.806502 CACTGCATCTTCAACAAAAACTTCA 59.193 36.000 0.00 0.00 0.00 3.02
300 301 5.232838 CCACTGCATCTTCAACAAAAACTTC 59.767 40.000 0.00 0.00 0.00 3.01
301 302 5.105392 TCCACTGCATCTTCAACAAAAACTT 60.105 36.000 0.00 0.00 0.00 2.66
302 303 4.402155 TCCACTGCATCTTCAACAAAAACT 59.598 37.500 0.00 0.00 0.00 2.66
303 304 4.681744 TCCACTGCATCTTCAACAAAAAC 58.318 39.130 0.00 0.00 0.00 2.43
304 305 4.644234 TCTCCACTGCATCTTCAACAAAAA 59.356 37.500 0.00 0.00 0.00 1.94
305 306 4.206375 TCTCCACTGCATCTTCAACAAAA 58.794 39.130 0.00 0.00 0.00 2.44
306 307 3.819368 TCTCCACTGCATCTTCAACAAA 58.181 40.909 0.00 0.00 0.00 2.83
307 308 3.490439 TCTCCACTGCATCTTCAACAA 57.510 42.857 0.00 0.00 0.00 2.83
308 309 3.071457 TCTTCTCCACTGCATCTTCAACA 59.929 43.478 0.00 0.00 0.00 3.33
309 310 3.668447 TCTTCTCCACTGCATCTTCAAC 58.332 45.455 0.00 0.00 0.00 3.18
310 311 4.067896 GTTCTTCTCCACTGCATCTTCAA 58.932 43.478 0.00 0.00 0.00 2.69
311 312 3.071457 TGTTCTTCTCCACTGCATCTTCA 59.929 43.478 0.00 0.00 0.00 3.02
312 313 3.668447 TGTTCTTCTCCACTGCATCTTC 58.332 45.455 0.00 0.00 0.00 2.87
313 314 3.326006 TCTGTTCTTCTCCACTGCATCTT 59.674 43.478 0.00 0.00 0.00 2.40
314 315 2.902486 TCTGTTCTTCTCCACTGCATCT 59.098 45.455 0.00 0.00 0.00 2.90
315 316 3.325293 TCTGTTCTTCTCCACTGCATC 57.675 47.619 0.00 0.00 0.00 3.91
316 317 3.326006 TCTTCTGTTCTTCTCCACTGCAT 59.674 43.478 0.00 0.00 0.00 3.96
317 318 2.700371 TCTTCTGTTCTTCTCCACTGCA 59.300 45.455 0.00 0.00 0.00 4.41
318 319 3.393089 TCTTCTGTTCTTCTCCACTGC 57.607 47.619 0.00 0.00 0.00 4.40
319 320 4.749099 CACTTCTTCTGTTCTTCTCCACTG 59.251 45.833 0.00 0.00 0.00 3.66
320 321 4.407296 ACACTTCTTCTGTTCTTCTCCACT 59.593 41.667 0.00 0.00 0.00 4.00
321 322 4.698575 ACACTTCTTCTGTTCTTCTCCAC 58.301 43.478 0.00 0.00 0.00 4.02
322 323 4.202264 GGACACTTCTTCTGTTCTTCTCCA 60.202 45.833 0.00 0.00 0.00 3.86
323 324 4.039852 AGGACACTTCTTCTGTTCTTCTCC 59.960 45.833 0.00 0.00 0.00 3.71
324 325 5.208463 AGGACACTTCTTCTGTTCTTCTC 57.792 43.478 0.00 0.00 0.00 2.87
325 326 4.261825 CGAGGACACTTCTTCTGTTCTTCT 60.262 45.833 0.00 0.00 26.56 2.85
326 327 3.984633 CGAGGACACTTCTTCTGTTCTTC 59.015 47.826 0.00 0.00 26.56 2.87
327 328 3.800604 GCGAGGACACTTCTTCTGTTCTT 60.801 47.826 0.00 0.00 26.56 2.52
328 329 2.288518 GCGAGGACACTTCTTCTGTTCT 60.289 50.000 0.00 0.00 29.34 3.01
329 330 2.062519 GCGAGGACACTTCTTCTGTTC 58.937 52.381 0.00 0.00 0.00 3.18
330 331 1.270358 GGCGAGGACACTTCTTCTGTT 60.270 52.381 0.00 0.00 0.00 3.16
331 332 0.318762 GGCGAGGACACTTCTTCTGT 59.681 55.000 0.00 0.00 0.00 3.41
332 333 0.318441 TGGCGAGGACACTTCTTCTG 59.682 55.000 0.00 0.00 0.00 3.02
333 334 1.270907 ATGGCGAGGACACTTCTTCT 58.729 50.000 0.00 0.00 0.00 2.85
334 335 2.961526 TATGGCGAGGACACTTCTTC 57.038 50.000 0.00 0.00 0.00 2.87
335 336 2.103263 GGATATGGCGAGGACACTTCTT 59.897 50.000 0.00 0.00 0.00 2.52
336 337 1.689273 GGATATGGCGAGGACACTTCT 59.311 52.381 0.00 0.00 0.00 2.85
337 338 1.603172 CGGATATGGCGAGGACACTTC 60.603 57.143 0.00 0.00 0.00 3.01
338 339 0.389391 CGGATATGGCGAGGACACTT 59.611 55.000 0.00 0.00 0.00 3.16
339 340 0.467474 TCGGATATGGCGAGGACACT 60.467 55.000 0.00 0.00 0.00 3.55
340 341 0.603569 ATCGGATATGGCGAGGACAC 59.396 55.000 0.00 0.00 0.00 3.67
341 342 0.888619 GATCGGATATGGCGAGGACA 59.111 55.000 0.00 0.00 0.00 4.02
342 343 0.888619 TGATCGGATATGGCGAGGAC 59.111 55.000 0.00 0.00 0.00 3.85
343 344 1.852633 ATGATCGGATATGGCGAGGA 58.147 50.000 0.00 0.00 0.00 3.71
344 345 2.427095 TGTATGATCGGATATGGCGAGG 59.573 50.000 0.00 0.00 0.00 4.63
345 346 3.782889 TGTATGATCGGATATGGCGAG 57.217 47.619 0.00 0.00 0.00 5.03
346 347 3.447229 ACATGTATGATCGGATATGGCGA 59.553 43.478 0.00 0.00 0.00 5.54
347 348 3.553105 CACATGTATGATCGGATATGGCG 59.447 47.826 0.00 0.00 0.00 5.69
348 349 4.758688 TCACATGTATGATCGGATATGGC 58.241 43.478 0.00 0.00 0.00 4.40
349 350 4.807834 GCTCACATGTATGATCGGATATGG 59.192 45.833 0.00 0.00 0.00 2.74
350 351 5.413499 TGCTCACATGTATGATCGGATATG 58.587 41.667 0.00 0.00 0.00 1.78
351 352 5.665916 TGCTCACATGTATGATCGGATAT 57.334 39.130 0.00 0.00 0.00 1.63
352 353 5.185635 TGATGCTCACATGTATGATCGGATA 59.814 40.000 0.00 0.00 36.35 2.59
353 354 4.020839 TGATGCTCACATGTATGATCGGAT 60.021 41.667 0.00 0.00 36.35 4.18
354 355 3.321682 TGATGCTCACATGTATGATCGGA 59.678 43.478 0.00 0.00 36.35 4.55
355 356 3.656559 TGATGCTCACATGTATGATCGG 58.343 45.455 0.00 0.00 36.35 4.18
356 357 4.329256 GGATGATGCTCACATGTATGATCG 59.671 45.833 0.00 0.00 36.35 3.69
357 358 5.489249 AGGATGATGCTCACATGTATGATC 58.511 41.667 0.00 0.00 36.35 2.92
358 359 5.500546 AGGATGATGCTCACATGTATGAT 57.499 39.130 0.00 0.00 36.35 2.45
359 360 4.968971 AGGATGATGCTCACATGTATGA 57.031 40.909 0.00 0.00 36.35 2.15
360 361 5.278315 CCAAAGGATGATGCTCACATGTATG 60.278 44.000 0.00 0.00 36.35 2.39
361 362 4.825634 CCAAAGGATGATGCTCACATGTAT 59.174 41.667 0.00 0.00 36.35 2.29
362 363 4.080413 TCCAAAGGATGATGCTCACATGTA 60.080 41.667 0.00 0.00 36.35 2.29
363 364 3.021695 CCAAAGGATGATGCTCACATGT 58.978 45.455 0.00 0.00 36.35 3.21
364 365 3.284617 TCCAAAGGATGATGCTCACATG 58.715 45.455 0.00 0.00 36.35 3.21
365 366 3.657398 TCCAAAGGATGATGCTCACAT 57.343 42.857 0.00 0.00 39.98 3.21
366 367 3.438216 TTCCAAAGGATGATGCTCACA 57.562 42.857 0.00 0.00 0.00 3.58
367 368 3.507233 TGTTTCCAAAGGATGATGCTCAC 59.493 43.478 0.00 0.00 0.00 3.51
368 369 3.765381 TGTTTCCAAAGGATGATGCTCA 58.235 40.909 0.00 0.00 0.00 4.26
369 370 4.789012 TTGTTTCCAAAGGATGATGCTC 57.211 40.909 0.00 0.00 0.00 4.26
370 371 5.544650 CTTTTGTTTCCAAAGGATGATGCT 58.455 37.500 0.00 0.00 41.37 3.79
371 372 4.152938 GCTTTTGTTTCCAAAGGATGATGC 59.847 41.667 2.01 0.00 41.37 3.91
372 373 5.299148 TGCTTTTGTTTCCAAAGGATGATG 58.701 37.500 2.01 0.00 41.37 3.07
373 374 5.070847 ACTGCTTTTGTTTCCAAAGGATGAT 59.929 36.000 2.01 0.00 41.37 2.45
374 375 4.405358 ACTGCTTTTGTTTCCAAAGGATGA 59.595 37.500 2.01 0.00 41.37 2.92
375 376 4.508861 CACTGCTTTTGTTTCCAAAGGATG 59.491 41.667 2.01 0.00 41.37 3.51
376 377 4.696455 CACTGCTTTTGTTTCCAAAGGAT 58.304 39.130 2.01 0.00 41.37 3.24
377 378 3.678529 GCACTGCTTTTGTTTCCAAAGGA 60.679 43.478 2.01 0.00 41.37 3.36
378 379 2.609002 GCACTGCTTTTGTTTCCAAAGG 59.391 45.455 0.00 0.00 41.37 3.11
379 380 3.062504 GTGCACTGCTTTTGTTTCCAAAG 59.937 43.478 10.32 0.00 41.37 2.77
380 381 2.999355 GTGCACTGCTTTTGTTTCCAAA 59.001 40.909 10.32 0.00 38.77 3.28
381 382 2.028658 TGTGCACTGCTTTTGTTTCCAA 60.029 40.909 19.41 0.00 0.00 3.53
382 383 1.547820 TGTGCACTGCTTTTGTTTCCA 59.452 42.857 19.41 0.00 0.00 3.53
383 384 2.292103 TGTGCACTGCTTTTGTTTCC 57.708 45.000 19.41 0.00 0.00 3.13
384 385 3.864583 TCAATGTGCACTGCTTTTGTTTC 59.135 39.130 19.41 0.00 0.00 2.78
385 386 3.859443 TCAATGTGCACTGCTTTTGTTT 58.141 36.364 19.41 0.00 0.00 2.83
386 387 3.130869 TCTCAATGTGCACTGCTTTTGTT 59.869 39.130 19.41 0.00 0.00 2.83
387 388 2.689471 TCTCAATGTGCACTGCTTTTGT 59.311 40.909 19.41 0.00 0.00 2.83
388 389 3.358707 TCTCAATGTGCACTGCTTTTG 57.641 42.857 19.41 13.12 0.00 2.44
389 390 3.570975 TCATCTCAATGTGCACTGCTTTT 59.429 39.130 19.41 1.30 34.32 2.27
390 391 3.151554 TCATCTCAATGTGCACTGCTTT 58.848 40.909 19.41 3.84 34.32 3.51
391 392 2.786777 TCATCTCAATGTGCACTGCTT 58.213 42.857 19.41 6.24 34.32 3.91
392 393 2.484742 TCATCTCAATGTGCACTGCT 57.515 45.000 19.41 0.00 34.32 4.24
393 394 3.777465 AATCATCTCAATGTGCACTGC 57.223 42.857 19.41 0.00 34.32 4.40
394 395 4.862574 CCAAAATCATCTCAATGTGCACTG 59.137 41.667 19.41 9.19 34.32 3.66
395 396 4.768448 TCCAAAATCATCTCAATGTGCACT 59.232 37.500 19.41 0.15 34.32 4.40
396 397 5.063180 TCCAAAATCATCTCAATGTGCAC 57.937 39.130 10.75 10.75 34.32 4.57
397 398 5.336929 CCTTCCAAAATCATCTCAATGTGCA 60.337 40.000 0.00 0.00 34.32 4.57
398 399 5.105635 TCCTTCCAAAATCATCTCAATGTGC 60.106 40.000 0.00 0.00 34.32 4.57
399 400 6.376299 TCTCCTTCCAAAATCATCTCAATGTG 59.624 38.462 0.00 0.00 34.32 3.21
400 401 6.487828 TCTCCTTCCAAAATCATCTCAATGT 58.512 36.000 0.00 0.00 34.32 2.71
401 402 7.122353 ACTTCTCCTTCCAAAATCATCTCAATG 59.878 37.037 0.00 0.00 0.00 2.82
402 403 7.180663 ACTTCTCCTTCCAAAATCATCTCAAT 58.819 34.615 0.00 0.00 0.00 2.57
403 404 6.546484 ACTTCTCCTTCCAAAATCATCTCAA 58.454 36.000 0.00 0.00 0.00 3.02
404 405 6.013032 AGACTTCTCCTTCCAAAATCATCTCA 60.013 38.462 0.00 0.00 0.00 3.27
405 406 6.413892 AGACTTCTCCTTCCAAAATCATCTC 58.586 40.000 0.00 0.00 0.00 2.75
406 407 6.385766 AGACTTCTCCTTCCAAAATCATCT 57.614 37.500 0.00 0.00 0.00 2.90
407 408 6.432472 ACAAGACTTCTCCTTCCAAAATCATC 59.568 38.462 0.00 0.00 0.00 2.92
408 409 6.310149 ACAAGACTTCTCCTTCCAAAATCAT 58.690 36.000 0.00 0.00 0.00 2.45
409 410 5.694995 ACAAGACTTCTCCTTCCAAAATCA 58.305 37.500 0.00 0.00 0.00 2.57
410 411 6.263168 TGAACAAGACTTCTCCTTCCAAAATC 59.737 38.462 0.00 0.00 0.00 2.17
411 412 6.129179 TGAACAAGACTTCTCCTTCCAAAAT 58.871 36.000 0.00 0.00 0.00 1.82
412 413 5.505780 TGAACAAGACTTCTCCTTCCAAAA 58.494 37.500 0.00 0.00 0.00 2.44
413 414 5.110814 TGAACAAGACTTCTCCTTCCAAA 57.889 39.130 0.00 0.00 0.00 3.28
414 415 4.164221 ACTGAACAAGACTTCTCCTTCCAA 59.836 41.667 0.00 0.00 0.00 3.53
415 416 3.711704 ACTGAACAAGACTTCTCCTTCCA 59.288 43.478 0.00 0.00 0.00 3.53
416 417 4.344359 ACTGAACAAGACTTCTCCTTCC 57.656 45.455 0.00 0.00 0.00 3.46
417 418 5.119694 ACAACTGAACAAGACTTCTCCTTC 58.880 41.667 0.00 0.00 0.00 3.46
418 419 5.104259 ACAACTGAACAAGACTTCTCCTT 57.896 39.130 0.00 0.00 0.00 3.36
419 420 4.762289 ACAACTGAACAAGACTTCTCCT 57.238 40.909 0.00 0.00 0.00 3.69
420 421 4.876107 TGAACAACTGAACAAGACTTCTCC 59.124 41.667 0.00 0.00 0.00 3.71
421 422 5.220681 GGTGAACAACTGAACAAGACTTCTC 60.221 44.000 0.00 0.00 0.00 2.87
422 423 4.636206 GGTGAACAACTGAACAAGACTTCT 59.364 41.667 0.00 0.00 0.00 2.85
423 424 4.494199 CGGTGAACAACTGAACAAGACTTC 60.494 45.833 0.00 0.00 37.33 3.01
424 425 3.374058 CGGTGAACAACTGAACAAGACTT 59.626 43.478 0.00 0.00 37.33 3.01
425 426 2.936498 CGGTGAACAACTGAACAAGACT 59.064 45.455 0.00 0.00 37.33 3.24
426 427 2.933906 TCGGTGAACAACTGAACAAGAC 59.066 45.455 0.00 0.00 41.39 3.01
427 428 3.254470 TCGGTGAACAACTGAACAAGA 57.746 42.857 0.00 0.00 41.39 3.02
456 457 1.317431 TTCATCCCACATGCAGCTGC 61.317 55.000 31.89 31.89 42.50 5.25
457 458 1.399714 ATTCATCCCACATGCAGCTG 58.600 50.000 10.11 10.11 0.00 4.24
458 459 2.579873 GTATTCATCCCACATGCAGCT 58.420 47.619 0.00 0.00 0.00 4.24
459 460 1.265095 CGTATTCATCCCACATGCAGC 59.735 52.381 0.00 0.00 0.00 5.25
460 461 2.545526 GTCGTATTCATCCCACATGCAG 59.454 50.000 0.00 0.00 0.00 4.41
461 462 2.560504 GTCGTATTCATCCCACATGCA 58.439 47.619 0.00 0.00 0.00 3.96
462 463 1.526887 CGTCGTATTCATCCCACATGC 59.473 52.381 0.00 0.00 0.00 4.06
463 464 2.539688 CACGTCGTATTCATCCCACATG 59.460 50.000 0.00 0.00 0.00 3.21
464 465 2.167693 ACACGTCGTATTCATCCCACAT 59.832 45.455 0.00 0.00 0.00 3.21
465 466 1.546923 ACACGTCGTATTCATCCCACA 59.453 47.619 0.00 0.00 0.00 4.17
466 467 1.924524 CACACGTCGTATTCATCCCAC 59.075 52.381 0.00 0.00 0.00 4.61
467 468 1.134936 CCACACGTCGTATTCATCCCA 60.135 52.381 0.00 0.00 0.00 4.37
468 469 1.135527 TCCACACGTCGTATTCATCCC 59.864 52.381 0.00 0.00 0.00 3.85
469 470 2.190981 GTCCACACGTCGTATTCATCC 58.809 52.381 0.00 0.00 0.00 3.51
470 471 2.190981 GGTCCACACGTCGTATTCATC 58.809 52.381 0.00 0.00 0.00 2.92
471 472 1.468565 CGGTCCACACGTCGTATTCAT 60.469 52.381 0.00 0.00 0.00 2.57
472 473 0.109643 CGGTCCACACGTCGTATTCA 60.110 55.000 0.00 0.00 0.00 2.57
473 474 0.799534 CCGGTCCACACGTCGTATTC 60.800 60.000 0.00 0.00 0.00 1.75
474 475 1.213537 CCGGTCCACACGTCGTATT 59.786 57.895 0.00 0.00 0.00 1.89
475 476 2.879907 CCGGTCCACACGTCGTAT 59.120 61.111 0.00 0.00 0.00 3.06
476 477 4.041917 GCCGGTCCACACGTCGTA 62.042 66.667 1.90 0.00 0.00 3.43
478 479 4.735132 ATGCCGGTCCACACGTCG 62.735 66.667 1.90 0.00 0.00 5.12
479 480 2.358247 AATGCCGGTCCACACGTC 60.358 61.111 1.90 0.00 0.00 4.34
480 481 2.668212 CAATGCCGGTCCACACGT 60.668 61.111 1.90 0.00 0.00 4.49
481 482 2.668212 ACAATGCCGGTCCACACG 60.668 61.111 1.90 0.00 0.00 4.49
482 483 1.577328 CTGACAATGCCGGTCCACAC 61.577 60.000 1.90 0.00 34.36 3.82
483 484 1.302431 CTGACAATGCCGGTCCACA 60.302 57.895 1.90 0.00 34.36 4.17
484 485 1.302511 ACTGACAATGCCGGTCCAC 60.303 57.895 1.90 0.00 34.36 4.02
485 486 1.302431 CACTGACAATGCCGGTCCA 60.302 57.895 1.90 0.00 34.36 4.02
486 487 1.003839 TCACTGACAATGCCGGTCC 60.004 57.895 1.90 0.00 34.36 4.46
487 488 0.037326 TCTCACTGACAATGCCGGTC 60.037 55.000 1.90 0.00 35.83 4.79
488 489 0.036952 CTCTCACTGACAATGCCGGT 60.037 55.000 1.90 0.00 0.00 5.28
489 490 0.036952 ACTCTCACTGACAATGCCGG 60.037 55.000 0.00 0.00 0.00 6.13
490 491 2.263077 GTACTCTCACTGACAATGCCG 58.737 52.381 0.00 0.00 0.00 5.69
491 492 2.094700 TCGTACTCTCACTGACAATGCC 60.095 50.000 0.00 0.00 0.00 4.40
492 493 3.217599 TCGTACTCTCACTGACAATGC 57.782 47.619 0.00 0.00 0.00 3.56
493 494 5.863935 TGAATTCGTACTCTCACTGACAATG 59.136 40.000 0.04 0.00 0.00 2.82
494 495 6.025749 TGAATTCGTACTCTCACTGACAAT 57.974 37.500 0.04 0.00 0.00 2.71
495 496 5.447624 TGAATTCGTACTCTCACTGACAA 57.552 39.130 0.04 0.00 0.00 3.18
496 497 5.447624 TTGAATTCGTACTCTCACTGACA 57.552 39.130 0.04 0.00 0.00 3.58
497 498 4.859798 CCTTGAATTCGTACTCTCACTGAC 59.140 45.833 0.04 0.00 0.00 3.51
498 499 4.523173 ACCTTGAATTCGTACTCTCACTGA 59.477 41.667 0.04 0.00 0.00 3.41
499 500 4.810790 ACCTTGAATTCGTACTCTCACTG 58.189 43.478 0.04 0.00 0.00 3.66
500 501 5.470047 AACCTTGAATTCGTACTCTCACT 57.530 39.130 0.04 0.00 0.00 3.41
501 502 6.541111 AAAACCTTGAATTCGTACTCTCAC 57.459 37.500 0.04 0.00 0.00 3.51
528 529 9.102757 GCAGATTCATCAGAGTATAAAGTCAAA 57.897 33.333 0.00 0.00 0.00 2.69
529 530 8.260114 TGCAGATTCATCAGAGTATAAAGTCAA 58.740 33.333 0.00 0.00 0.00 3.18
530 531 7.785033 TGCAGATTCATCAGAGTATAAAGTCA 58.215 34.615 0.00 0.00 0.00 3.41
531 532 8.140628 TCTGCAGATTCATCAGAGTATAAAGTC 58.859 37.037 13.74 0.00 33.42 3.01
532 533 8.016301 TCTGCAGATTCATCAGAGTATAAAGT 57.984 34.615 13.74 0.00 33.42 2.66
533 534 8.523523 CTCTGCAGATTCATCAGAGTATAAAG 57.476 38.462 18.63 0.00 45.23 1.85
541 542 1.140452 GCCCTCTGCAGATTCATCAGA 59.860 52.381 18.63 7.40 40.77 3.27
542 543 1.595466 GCCCTCTGCAGATTCATCAG 58.405 55.000 18.63 3.16 40.77 2.90
543 544 0.179065 CGCCCTCTGCAGATTCATCA 60.179 55.000 18.63 0.00 41.33 3.07
544 545 1.505477 GCGCCCTCTGCAGATTCATC 61.505 60.000 18.63 3.30 41.33 2.92
545 546 1.525535 GCGCCCTCTGCAGATTCAT 60.526 57.895 18.63 0.00 41.33 2.57
546 547 2.124983 GCGCCCTCTGCAGATTCA 60.125 61.111 18.63 0.00 41.33 2.57
547 548 3.267860 CGCGCCCTCTGCAGATTC 61.268 66.667 18.63 8.31 41.33 2.52
573 574 4.050934 GTTCTTTTGGGGCGGCGG 62.051 66.667 9.78 0.00 0.00 6.13
574 575 4.050934 GGTTCTTTTGGGGCGGCG 62.051 66.667 0.51 0.51 0.00 6.46
575 576 3.691342 GGGTTCTTTTGGGGCGGC 61.691 66.667 0.00 0.00 0.00 6.53
576 577 2.203567 TGGGTTCTTTTGGGGCGG 60.204 61.111 0.00 0.00 0.00 6.13
577 578 2.914908 CGTGGGTTCTTTTGGGGCG 61.915 63.158 0.00 0.00 0.00 6.13
578 579 3.047735 CGTGGGTTCTTTTGGGGC 58.952 61.111 0.00 0.00 0.00 5.80
579 580 2.570284 GGCGTGGGTTCTTTTGGGG 61.570 63.158 0.00 0.00 0.00 4.96
583 584 1.530655 CTGGGGCGTGGGTTCTTTT 60.531 57.895 0.00 0.00 0.00 2.27
694 727 3.202097 GCAGTGAGAGAAATAGGAAGGC 58.798 50.000 0.00 0.00 0.00 4.35
711 744 0.882042 GTGCTATGCCTATGCGCAGT 60.882 55.000 18.32 6.92 43.26 4.40
736 769 0.544697 AGAGGAGAGAGGGACGACTC 59.455 60.000 0.00 0.00 37.05 3.36
743 776 0.106217 GAGGGACAGAGGAGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
771 805 0.378610 GCTGAGCTAAATCGGGCAAC 59.621 55.000 0.00 0.00 0.00 4.17
844 887 2.776370 TAGCTCACGTTCCCGTCCCT 62.776 60.000 0.00 0.00 46.28 4.20
845 888 1.880819 TTAGCTCACGTTCCCGTCCC 61.881 60.000 0.00 0.00 46.28 4.46
872 919 1.421382 CGTGACGGAAATTGTACGGT 58.579 50.000 0.00 0.00 0.00 4.83
903 955 0.030908 GCTCGAGCGCTAATGTAGGT 59.969 55.000 23.61 0.00 0.00 3.08
1263 1348 2.674033 TCGAGGAAGGCGACGGAA 60.674 61.111 0.00 0.00 32.09 4.30
1558 1669 1.202020 TGCGCATTGTCGTAATTCTGC 60.202 47.619 5.66 0.00 0.00 4.26
1576 1687 4.398673 AGAAATTGGAGAATTCTGCTCTGC 59.601 41.667 25.01 12.22 35.18 4.26
1615 1734 3.425577 TGCAATGATCCTGCGATTTTC 57.574 42.857 11.14 0.00 42.97 2.29
1765 1884 5.009110 TCCATGTCAAAAATCACGCTGTTTA 59.991 36.000 0.00 0.00 0.00 2.01
1769 1888 3.557577 TCCATGTCAAAAATCACGCTG 57.442 42.857 0.00 0.00 0.00 5.18
1960 2092 8.815189 GGTGAGGAATTTCGAAATAGTAGTAAC 58.185 37.037 22.99 14.54 0.00 2.50
1980 2112 2.663196 GGAAGGTGGTCGGTGAGG 59.337 66.667 0.00 0.00 0.00 3.86
2015 2152 2.484264 GTCAGCAAAGCGGTTGTAGATT 59.516 45.455 0.00 0.00 39.63 2.40
2076 2235 4.604156 TCTCTATCTCCTTCTTCAGTGCA 58.396 43.478 0.00 0.00 0.00 4.57
2242 2418 1.296715 GTTGTCCTGAGGCCGATGT 59.703 57.895 0.00 0.00 0.00 3.06
2244 2420 1.488705 TTGGTTGTCCTGAGGCCGAT 61.489 55.000 0.00 0.00 34.23 4.18
2293 2473 3.254166 CACCAAATCTTAACAGCAGCAGT 59.746 43.478 0.00 0.00 0.00 4.40
2294 2474 3.829948 CACCAAATCTTAACAGCAGCAG 58.170 45.455 0.00 0.00 0.00 4.24
2295 2475 2.030007 GCACCAAATCTTAACAGCAGCA 60.030 45.455 0.00 0.00 0.00 4.41
2296 2476 2.030007 TGCACCAAATCTTAACAGCAGC 60.030 45.455 0.00 0.00 0.00 5.25
2297 2477 3.254166 AGTGCACCAAATCTTAACAGCAG 59.746 43.478 14.63 0.00 0.00 4.24
2298 2478 3.004629 CAGTGCACCAAATCTTAACAGCA 59.995 43.478 14.63 0.00 0.00 4.41
2299 2479 3.568538 CAGTGCACCAAATCTTAACAGC 58.431 45.455 14.63 0.00 0.00 4.40
2300 2480 3.004629 TGCAGTGCACCAAATCTTAACAG 59.995 43.478 15.37 0.00 31.71 3.16
2306 2486 1.274167 CCAATGCAGTGCACCAAATCT 59.726 47.619 22.44 0.00 43.04 2.40
2339 2530 2.777692 ACCATCACACCCCGAAGAATAT 59.222 45.455 0.00 0.00 0.00 1.28
2340 2531 2.093181 CACCATCACACCCCGAAGAATA 60.093 50.000 0.00 0.00 0.00 1.75
2341 2532 0.991920 ACCATCACACCCCGAAGAAT 59.008 50.000 0.00 0.00 0.00 2.40
2342 2533 0.036164 CACCATCACACCCCGAAGAA 59.964 55.000 0.00 0.00 0.00 2.52
2487 2692 1.207329 CTTAGCTACAACCTTCGCCCT 59.793 52.381 0.00 0.00 0.00 5.19
2558 2766 7.912056 TGATTGACCAGAAGATAGAACAAAG 57.088 36.000 0.00 0.00 0.00 2.77
2569 2778 5.475719 ACATTGCATTTGATTGACCAGAAG 58.524 37.500 4.32 0.00 0.00 2.85
2631 2843 1.890876 ACATGTTACGGCTGCAAGAA 58.109 45.000 0.50 0.00 34.07 2.52
2632 2844 2.753055 TACATGTTACGGCTGCAAGA 57.247 45.000 2.30 0.00 34.07 3.02
2667 2980 1.783250 AAAGCAGGCAGGCACCTACT 61.783 55.000 0.00 0.00 38.26 2.57
2668 2981 0.035439 TAAAGCAGGCAGGCACCTAC 60.035 55.000 0.00 0.00 38.26 3.18
2669 2982 0.035439 GTAAAGCAGGCAGGCACCTA 60.035 55.000 0.00 0.00 38.26 3.08
2670 2983 1.303643 GTAAAGCAGGCAGGCACCT 60.304 57.895 0.00 0.00 42.30 4.00
2671 2984 0.967380 ATGTAAAGCAGGCAGGCACC 60.967 55.000 0.00 0.00 35.83 5.01
2672 2985 0.890683 AATGTAAAGCAGGCAGGCAC 59.109 50.000 0.00 0.00 35.83 5.01
2761 5986 0.924823 AGCAAGGAATGAGATGCCCT 59.075 50.000 0.00 0.00 0.00 5.19
2820 6413 0.961753 CACCAAAAGGAAGGCACCTC 59.038 55.000 3.87 0.00 39.62 3.85
2941 6755 4.601794 CCAACCCTGGCAGTGGCA 62.602 66.667 19.44 19.44 43.71 4.92
2974 6788 2.125269 AACACAGCCGGATACCGC 60.125 61.111 5.05 1.13 46.86 5.68
3058 6872 1.078988 CCATTGTTGGCATGGTGGC 60.079 57.895 0.00 0.00 44.03 5.01
3068 6882 8.004087 AGTCTCAATCCAATAATCCATTGTTG 57.996 34.615 2.61 2.61 42.22 3.33
3069 6883 7.012704 CGAGTCTCAATCCAATAATCCATTGTT 59.987 37.037 0.00 0.00 42.22 2.83
3070 6884 6.484643 CGAGTCTCAATCCAATAATCCATTGT 59.515 38.462 0.00 0.00 42.22 2.71
3071 6885 6.484643 ACGAGTCTCAATCCAATAATCCATTG 59.515 38.462 0.00 0.00 43.23 2.82
3072 6886 6.595682 ACGAGTCTCAATCCAATAATCCATT 58.404 36.000 0.00 0.00 0.00 3.16
3073 6887 6.179906 ACGAGTCTCAATCCAATAATCCAT 57.820 37.500 0.00 0.00 0.00 3.41
3074 6888 5.614324 ACGAGTCTCAATCCAATAATCCA 57.386 39.130 0.00 0.00 0.00 3.41
3075 6889 6.284459 AGAACGAGTCTCAATCCAATAATCC 58.716 40.000 0.00 0.00 0.00 3.01
3107 6921 0.690411 AGCCATCTCCCAGAGGACAG 60.690 60.000 0.00 0.00 37.19 3.51
3108 6922 0.636647 TAGCCATCTCCCAGAGGACA 59.363 55.000 0.00 0.00 37.19 4.02
3115 6929 2.562296 AGAAAACCTAGCCATCTCCCA 58.438 47.619 0.00 0.00 0.00 4.37
3117 6931 4.074627 GGTAGAAAACCTAGCCATCTCC 57.925 50.000 0.00 0.00 45.75 3.71
3141 6955 6.377712 ACACTTCTACTAGGACATGGTAAGTC 59.622 42.308 0.00 0.00 35.29 3.01
3142 6956 6.254522 ACACTTCTACTAGGACATGGTAAGT 58.745 40.000 0.00 0.00 0.00 2.24
3143 6957 6.777213 ACACTTCTACTAGGACATGGTAAG 57.223 41.667 0.00 0.00 0.00 2.34
3144 6958 7.549147 AAACACTTCTACTAGGACATGGTAA 57.451 36.000 0.00 0.00 0.00 2.85
3145 6959 7.549147 AAAACACTTCTACTAGGACATGGTA 57.451 36.000 0.00 0.00 0.00 3.25
3146 6960 6.435292 AAAACACTTCTACTAGGACATGGT 57.565 37.500 0.00 0.00 0.00 3.55
3147 6961 5.577164 CGAAAACACTTCTACTAGGACATGG 59.423 44.000 0.00 0.00 0.00 3.66
3148 6962 5.062308 GCGAAAACACTTCTACTAGGACATG 59.938 44.000 0.00 0.00 0.00 3.21
3149 6963 5.169295 GCGAAAACACTTCTACTAGGACAT 58.831 41.667 0.00 0.00 0.00 3.06
3150 6964 4.038282 TGCGAAAACACTTCTACTAGGACA 59.962 41.667 0.00 0.00 0.00 4.02
3151 6965 4.553323 TGCGAAAACACTTCTACTAGGAC 58.447 43.478 0.00 0.00 0.00 3.85
3152 6966 4.859304 TGCGAAAACACTTCTACTAGGA 57.141 40.909 0.00 0.00 0.00 2.94
3153 6967 5.917541 TTTGCGAAAACACTTCTACTAGG 57.082 39.130 0.00 0.00 0.00 3.02
3178 6992 9.702494 GTGTTACTGTTACTAGGACATTTTACT 57.298 33.333 0.00 0.00 0.00 2.24
3179 6993 9.702494 AGTGTTACTGTTACTAGGACATTTTAC 57.298 33.333 0.00 0.00 0.00 2.01
3181 6995 9.052759 CAAGTGTTACTGTTACTAGGACATTTT 57.947 33.333 0.00 0.00 0.00 1.82
3182 6996 7.172703 GCAAGTGTTACTGTTACTAGGACATTT 59.827 37.037 0.00 0.00 0.00 2.32
3183 6997 6.649557 GCAAGTGTTACTGTTACTAGGACATT 59.350 38.462 0.00 0.00 0.00 2.71
3184 6998 6.164176 GCAAGTGTTACTGTTACTAGGACAT 58.836 40.000 0.00 0.00 0.00 3.06
3185 6999 5.069383 TGCAAGTGTTACTGTTACTAGGACA 59.931 40.000 0.00 0.00 0.00 4.02
3186 7000 5.535333 TGCAAGTGTTACTGTTACTAGGAC 58.465 41.667 0.00 0.00 0.00 3.85
3187 7001 5.794726 TGCAAGTGTTACTGTTACTAGGA 57.205 39.130 0.00 0.00 0.00 2.94
3188 7002 7.435068 AAATGCAAGTGTTACTGTTACTAGG 57.565 36.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.