Multiple sequence alignment - TraesCS3D01G147700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G147700 chr3D 100.000 2441 0 0 1 2441 112320411 112322851 0.000000e+00 4508.0
1 TraesCS3D01G147700 chr3D 76.923 637 103 16 1656 2252 463681505 463682137 3.030000e-84 322.0
2 TraesCS3D01G147700 chr3B 92.493 1492 76 20 132 1601 162858532 162860009 0.000000e+00 2102.0
3 TraesCS3D01G147700 chr3A 87.868 1393 100 30 153 1518 107862392 107863742 0.000000e+00 1572.0
4 TraesCS3D01G147700 chr3A 76.560 593 100 10 1654 2210 64085234 64085823 3.070000e-74 289.0
5 TraesCS3D01G147700 chr4D 79.048 630 93 12 1656 2248 504283284 504283911 1.760000e-106 396.0
6 TraesCS3D01G147700 chr7B 78.537 615 95 18 1656 2235 104298331 104298943 1.070000e-98 370.0
7 TraesCS3D01G147700 chr7B 77.869 610 98 9 1656 2229 747358623 747359231 6.460000e-91 344.0
8 TraesCS3D01G147700 chr2D 79.268 574 85 11 1665 2204 112538804 112538231 1.070000e-98 370.0
9 TraesCS3D01G147700 chr2D 77.963 599 93 20 1653 2215 391287071 391287666 3.010000e-89 339.0
10 TraesCS3D01G147700 chr2D 77.057 632 104 18 1656 2249 113920039 113920667 2.340000e-85 326.0
11 TraesCS3D01G147700 chr2D 82.796 93 13 3 33 123 107919062 107918971 2.010000e-11 80.5
12 TraesCS3D01G147700 chr6A 79.027 596 82 17 1657 2216 586812401 586811813 3.830000e-98 368.0
13 TraesCS3D01G147700 chr6A 80.634 284 26 7 1656 1911 5126905 5126623 2.480000e-45 193.0
14 TraesCS3D01G147700 chr7A 78.938 584 88 14 1656 2205 393325750 393325168 4.960000e-97 364.0
15 TraesCS3D01G147700 chr6B 78.161 609 97 9 1656 2229 84603488 84602881 2.990000e-94 355.0
16 TraesCS3D01G147700 chr6B 81.034 406 71 3 1806 2205 120834368 120834773 3.920000e-83 318.0
17 TraesCS3D01G147700 chr6B 77.700 574 84 14 1656 2195 697974989 697974426 6.550000e-81 311.0
18 TraesCS3D01G147700 chr7D 77.302 630 100 21 1656 2249 627403968 627404590 5.030000e-87 331.0
19 TraesCS3D01G147700 chr7D 80.000 430 78 4 1806 2229 632120989 632121416 6.550000e-81 311.0
20 TraesCS3D01G147700 chr5B 77.340 609 106 19 1656 2234 30522203 30522809 5.030000e-87 331.0
21 TraesCS3D01G147700 chr5D 81.698 377 39 7 1654 2003 498177069 498176696 1.100000e-73 287.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G147700 chr3D 112320411 112322851 2440 False 4508 4508 100.000 1 2441 1 chr3D.!!$F1 2440
1 TraesCS3D01G147700 chr3D 463681505 463682137 632 False 322 322 76.923 1656 2252 1 chr3D.!!$F2 596
2 TraesCS3D01G147700 chr3B 162858532 162860009 1477 False 2102 2102 92.493 132 1601 1 chr3B.!!$F1 1469
3 TraesCS3D01G147700 chr3A 107862392 107863742 1350 False 1572 1572 87.868 153 1518 1 chr3A.!!$F2 1365
4 TraesCS3D01G147700 chr3A 64085234 64085823 589 False 289 289 76.560 1654 2210 1 chr3A.!!$F1 556
5 TraesCS3D01G147700 chr4D 504283284 504283911 627 False 396 396 79.048 1656 2248 1 chr4D.!!$F1 592
6 TraesCS3D01G147700 chr7B 104298331 104298943 612 False 370 370 78.537 1656 2235 1 chr7B.!!$F1 579
7 TraesCS3D01G147700 chr7B 747358623 747359231 608 False 344 344 77.869 1656 2229 1 chr7B.!!$F2 573
8 TraesCS3D01G147700 chr2D 112538231 112538804 573 True 370 370 79.268 1665 2204 1 chr2D.!!$R2 539
9 TraesCS3D01G147700 chr2D 391287071 391287666 595 False 339 339 77.963 1653 2215 1 chr2D.!!$F2 562
10 TraesCS3D01G147700 chr2D 113920039 113920667 628 False 326 326 77.057 1656 2249 1 chr2D.!!$F1 593
11 TraesCS3D01G147700 chr6A 586811813 586812401 588 True 368 368 79.027 1657 2216 1 chr6A.!!$R2 559
12 TraesCS3D01G147700 chr7A 393325168 393325750 582 True 364 364 78.938 1656 2205 1 chr7A.!!$R1 549
13 TraesCS3D01G147700 chr6B 84602881 84603488 607 True 355 355 78.161 1656 2229 1 chr6B.!!$R1 573
14 TraesCS3D01G147700 chr6B 697974426 697974989 563 True 311 311 77.700 1656 2195 1 chr6B.!!$R2 539
15 TraesCS3D01G147700 chr7D 627403968 627404590 622 False 331 331 77.302 1656 2249 1 chr7D.!!$F1 593
16 TraesCS3D01G147700 chr5B 30522203 30522809 606 False 331 331 77.340 1656 2234 1 chr5B.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.034198 TTGGATGACGTCTTTCCGCA 59.966 50.0 23.96 15.21 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1588 1632 0.040425 ACACAGCGCCGTTGAATTTC 60.04 50.0 8.25 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.596268 TGAATATCGGCTCATGAATTTCG 57.404 39.130 0.00 0.00 0.00 3.46
23 24 5.056480 TGAATATCGGCTCATGAATTTCGT 58.944 37.500 0.00 0.00 0.00 3.85
24 25 5.527214 TGAATATCGGCTCATGAATTTCGTT 59.473 36.000 0.00 0.00 0.00 3.85
25 26 3.951979 ATCGGCTCATGAATTTCGTTC 57.048 42.857 0.00 0.00 37.35 3.95
48 49 8.809159 TTCAATTAGTGAAAATGCGATTTGAA 57.191 26.923 0.00 0.00 43.43 2.69
49 50 8.809159 TCAATTAGTGAAAATGCGATTTGAAA 57.191 26.923 0.00 0.00 31.51 2.69
50 51 9.421806 TCAATTAGTGAAAATGCGATTTGAAAT 57.578 25.926 0.00 0.00 31.51 2.17
56 57 8.971321 AGTGAAAATGCGATTTGAAATATATGC 58.029 29.630 0.00 0.00 31.77 3.14
57 58 7.940960 GTGAAAATGCGATTTGAAATATATGCG 59.059 33.333 0.00 0.00 31.77 4.73
58 59 6.932901 AAATGCGATTTGAAATATATGCGG 57.067 33.333 0.00 0.00 0.00 5.69
59 60 5.627499 ATGCGATTTGAAATATATGCGGT 57.373 34.783 0.00 0.00 0.00 5.68
60 61 5.431420 TGCGATTTGAAATATATGCGGTT 57.569 34.783 0.00 0.00 0.00 4.44
61 62 6.546972 TGCGATTTGAAATATATGCGGTTA 57.453 33.333 0.00 0.00 0.00 2.85
62 63 6.367421 TGCGATTTGAAATATATGCGGTTAC 58.633 36.000 0.00 0.00 0.00 2.50
63 64 5.503376 GCGATTTGAAATATATGCGGTTACG 59.497 40.000 0.00 0.00 44.63 3.18
64 65 6.013085 CGATTTGAAATATATGCGGTTACGG 58.987 40.000 0.00 0.00 41.36 4.02
65 66 6.347079 CGATTTGAAATATATGCGGTTACGGT 60.347 38.462 0.00 0.00 41.36 4.83
66 67 6.680874 TTTGAAATATATGCGGTTACGGTT 57.319 33.333 0.00 0.00 41.36 4.44
67 68 5.660629 TGAAATATATGCGGTTACGGTTG 57.339 39.130 0.00 0.00 41.36 3.77
68 69 4.512198 TGAAATATATGCGGTTACGGTTGG 59.488 41.667 0.00 0.00 41.36 3.77
69 70 4.339872 AATATATGCGGTTACGGTTGGA 57.660 40.909 0.00 0.00 41.36 3.53
70 71 2.922740 ATATGCGGTTACGGTTGGAT 57.077 45.000 0.00 0.00 41.36 3.41
71 72 1.942677 TATGCGGTTACGGTTGGATG 58.057 50.000 0.00 0.00 41.36 3.51
72 73 0.250793 ATGCGGTTACGGTTGGATGA 59.749 50.000 0.00 0.00 41.36 2.92
73 74 0.671163 TGCGGTTACGGTTGGATGAC 60.671 55.000 0.00 0.00 41.36 3.06
74 75 1.689352 GCGGTTACGGTTGGATGACG 61.689 60.000 0.00 0.00 41.36 4.35
75 76 0.388907 CGGTTACGGTTGGATGACGT 60.389 55.000 0.00 0.00 43.88 4.34
76 77 1.353076 GGTTACGGTTGGATGACGTC 58.647 55.000 9.11 9.11 41.53 4.34
77 78 1.067354 GGTTACGGTTGGATGACGTCT 60.067 52.381 17.92 1.84 41.53 4.18
78 79 2.611224 GGTTACGGTTGGATGACGTCTT 60.611 50.000 17.92 10.81 41.53 3.01
79 80 3.062042 GTTACGGTTGGATGACGTCTTT 58.938 45.455 17.92 4.03 41.53 2.52
80 81 1.792006 ACGGTTGGATGACGTCTTTC 58.208 50.000 17.92 10.08 35.77 2.62
81 82 1.076332 CGGTTGGATGACGTCTTTCC 58.924 55.000 23.33 23.33 0.00 3.13
82 83 1.076332 GGTTGGATGACGTCTTTCCG 58.924 55.000 23.96 0.00 0.00 4.30
83 84 0.442699 GTTGGATGACGTCTTTCCGC 59.557 55.000 23.96 18.14 0.00 5.54
84 85 0.034198 TTGGATGACGTCTTTCCGCA 59.966 50.000 23.96 15.21 0.00 5.69
85 86 0.669318 TGGATGACGTCTTTCCGCAC 60.669 55.000 23.96 8.82 0.00 5.34
86 87 0.389948 GGATGACGTCTTTCCGCACT 60.390 55.000 17.92 0.00 0.00 4.40
87 88 0.992802 GATGACGTCTTTCCGCACTC 59.007 55.000 17.92 0.00 0.00 3.51
88 89 0.732880 ATGACGTCTTTCCGCACTCG 60.733 55.000 17.92 0.00 0.00 4.18
89 90 1.371389 GACGTCTTTCCGCACTCGT 60.371 57.895 8.70 0.00 0.00 4.18
90 91 1.606350 GACGTCTTTCCGCACTCGTG 61.606 60.000 8.70 0.00 0.00 4.35
91 92 1.660575 CGTCTTTCCGCACTCGTGT 60.661 57.895 0.00 0.00 0.00 4.49
92 93 1.213094 CGTCTTTCCGCACTCGTGTT 61.213 55.000 0.00 0.00 0.00 3.32
93 94 0.507358 GTCTTTCCGCACTCGTGTTC 59.493 55.000 0.00 0.00 0.00 3.18
94 95 0.937699 TCTTTCCGCACTCGTGTTCG 60.938 55.000 2.68 2.68 38.55 3.95
95 96 2.480426 CTTTCCGCACTCGTGTTCGC 62.480 60.000 4.14 0.00 36.96 4.70
99 100 3.764049 GCACTCGTGTTCGCGGAC 61.764 66.667 11.62 11.62 36.96 4.79
100 101 2.050351 CACTCGTGTTCGCGGACT 60.050 61.111 20.15 0.00 36.96 3.85
101 102 2.050351 ACTCGTGTTCGCGGACTG 60.050 61.111 20.15 11.52 36.96 3.51
102 103 2.805353 CTCGTGTTCGCGGACTGG 60.805 66.667 20.15 10.54 36.96 4.00
103 104 3.553437 CTCGTGTTCGCGGACTGGT 62.553 63.158 20.15 0.00 36.96 4.00
104 105 3.103911 CGTGTTCGCGGACTGGTC 61.104 66.667 20.15 5.87 0.00 4.02
105 106 2.737376 GTGTTCGCGGACTGGTCC 60.737 66.667 20.15 9.55 46.18 4.46
118 119 5.203060 GGACTGGTCCTCTATTCACATAC 57.797 47.826 12.09 0.00 46.16 2.39
119 120 4.649674 GGACTGGTCCTCTATTCACATACA 59.350 45.833 12.09 0.00 46.16 2.29
120 121 5.221342 GGACTGGTCCTCTATTCACATACAG 60.221 48.000 12.09 0.00 46.16 2.74
121 122 5.519808 ACTGGTCCTCTATTCACATACAGA 58.480 41.667 0.00 0.00 0.00 3.41
122 123 6.139671 ACTGGTCCTCTATTCACATACAGAT 58.860 40.000 0.00 0.00 0.00 2.90
123 124 6.041409 ACTGGTCCTCTATTCACATACAGATG 59.959 42.308 0.00 0.00 39.16 2.90
124 125 5.221521 TGGTCCTCTATTCACATACAGATGC 60.222 44.000 0.00 0.00 36.43 3.91
125 126 4.920340 GTCCTCTATTCACATACAGATGCG 59.080 45.833 0.00 0.00 36.43 4.73
126 127 4.827284 TCCTCTATTCACATACAGATGCGA 59.173 41.667 0.00 0.00 36.43 5.10
127 128 5.048434 TCCTCTATTCACATACAGATGCGAG 60.048 44.000 0.00 0.00 36.43 5.03
128 129 5.048434 CCTCTATTCACATACAGATGCGAGA 60.048 44.000 0.00 0.00 36.43 4.04
129 130 6.006759 TCTATTCACATACAGATGCGAGAG 57.993 41.667 0.00 0.00 36.43 3.20
130 131 4.662468 ATTCACATACAGATGCGAGAGT 57.338 40.909 0.00 0.00 36.43 3.24
161 163 1.823899 GGCGTTGGATGCCCTAAGG 60.824 63.158 0.00 0.00 44.49 2.69
169 171 1.694696 GGATGCCCTAAGGAGGTACAG 59.305 57.143 0.00 0.00 41.95 2.74
303 310 0.921347 CGTCGGTTCTGCTAATTCGG 59.079 55.000 0.00 0.00 0.00 4.30
395 403 1.865865 TCAAGGAGAAGAACACACGC 58.134 50.000 0.00 0.00 0.00 5.34
412 420 1.341369 CGCGAAACGGGAAAAATGCC 61.341 55.000 0.00 0.00 42.31 4.40
413 421 0.038618 GCGAAACGGGAAAAATGCCT 60.039 50.000 0.00 0.00 0.00 4.75
414 422 1.977188 CGAAACGGGAAAAATGCCTC 58.023 50.000 0.00 0.00 0.00 4.70
416 424 2.672714 GAAACGGGAAAAATGCCTCAC 58.327 47.619 0.00 0.00 0.00 3.51
426 438 6.262944 GGGAAAAATGCCTCACAAAGAAAAAT 59.737 34.615 0.00 0.00 0.00 1.82
564 577 5.323900 CAAACACTATTCCTGCACGTATTG 58.676 41.667 0.00 0.00 0.00 1.90
566 579 3.196901 ACACTATTCCTGCACGTATTGGA 59.803 43.478 0.00 0.00 0.00 3.53
822 838 4.285149 GCGCGCGATGATGGTCAC 62.285 66.667 37.18 7.60 0.00 3.67
823 839 3.630148 CGCGCGATGATGGTCACC 61.630 66.667 28.94 0.00 0.00 4.02
830 854 0.461548 GATGATGGTCACCTCGCAGA 59.538 55.000 0.00 0.00 0.00 4.26
831 855 0.176680 ATGATGGTCACCTCGCAGAC 59.823 55.000 0.00 0.00 0.00 3.51
885 909 2.416747 CTCGGTGCTTCTTCATCACAA 58.583 47.619 0.00 0.00 32.69 3.33
901 925 2.157738 CACAAGCCTTTTCTCTCCCAG 58.842 52.381 0.00 0.00 0.00 4.45
983 1019 1.987855 CCCCGAGGTAGCAAGGTGA 60.988 63.158 0.00 0.00 0.00 4.02
994 1030 0.388649 GCAAGGTGAGATCGTCGTGT 60.389 55.000 0.00 0.00 0.00 4.49
998 1034 1.868251 GTGAGATCGTCGTGTCGGC 60.868 63.158 0.00 0.00 0.00 5.54
1045 1081 3.995506 GACATGGCGGGGTTCCTGG 62.996 68.421 0.00 0.00 0.00 4.45
1247 1283 2.281345 CATCTCCCGGCTGCCATC 60.281 66.667 20.29 0.00 0.00 3.51
1518 1559 2.589014 CTCGTTTGCAATTTGAGCTCC 58.411 47.619 12.15 0.00 0.00 4.70
1554 1598 4.697514 TCTTTGAGAAAGAGTGACCACAG 58.302 43.478 2.78 0.00 42.31 3.66
1555 1599 2.533266 TGAGAAAGAGTGACCACAGC 57.467 50.000 2.78 0.00 0.00 4.40
1562 1606 0.529773 GAGTGACCACAGCGTTGACA 60.530 55.000 6.16 0.00 0.00 3.58
1568 1612 1.013596 CCACAGCGTTGACAAGTTCA 58.986 50.000 6.16 0.00 0.00 3.18
1580 1624 1.871039 ACAAGTTCATTCCACCGAACG 59.129 47.619 0.00 0.00 44.94 3.95
1591 1635 2.111460 CCGAACGTGGGTGGGAAA 59.889 61.111 0.00 0.00 0.00 3.13
1593 1637 0.891904 CCGAACGTGGGTGGGAAATT 60.892 55.000 0.00 0.00 0.00 1.82
1596 1640 1.957877 GAACGTGGGTGGGAAATTCAA 59.042 47.619 0.00 0.00 0.00 2.69
1597 1641 1.324383 ACGTGGGTGGGAAATTCAAC 58.676 50.000 0.00 0.00 0.00 3.18
1599 1643 0.601057 GTGGGTGGGAAATTCAACGG 59.399 55.000 0.00 0.00 0.00 4.44
1600 1644 1.182385 TGGGTGGGAAATTCAACGGC 61.182 55.000 0.00 0.00 0.00 5.68
1601 1645 1.211709 GGTGGGAAATTCAACGGCG 59.788 57.895 4.80 4.80 0.00 6.46
1602 1646 1.443702 GTGGGAAATTCAACGGCGC 60.444 57.895 6.90 0.00 0.00 6.53
1603 1647 1.602323 TGGGAAATTCAACGGCGCT 60.602 52.632 6.90 0.00 0.00 5.92
1604 1648 1.154035 GGGAAATTCAACGGCGCTG 60.154 57.895 16.39 16.39 0.00 5.18
1605 1649 1.579429 GGAAATTCAACGGCGCTGT 59.421 52.632 18.16 18.16 0.00 4.40
1606 1650 0.729140 GGAAATTCAACGGCGCTGTG 60.729 55.000 25.11 16.83 0.00 3.66
1607 1651 0.040425 GAAATTCAACGGCGCTGTGT 60.040 50.000 25.11 10.46 0.00 3.72
1608 1652 0.383949 AAATTCAACGGCGCTGTGTT 59.616 45.000 25.11 14.77 0.00 3.32
1609 1653 0.317770 AATTCAACGGCGCTGTGTTG 60.318 50.000 25.11 24.79 45.24 3.33
1610 1654 1.444119 ATTCAACGGCGCTGTGTTGT 61.444 50.000 25.11 3.53 44.43 3.32
1611 1655 1.649390 TTCAACGGCGCTGTGTTGTT 61.649 50.000 25.11 3.06 44.43 2.83
1612 1656 1.938814 CAACGGCGCTGTGTTGTTG 60.939 57.895 25.11 13.39 40.37 3.33
1613 1657 3.749735 AACGGCGCTGTGTTGTTGC 62.750 57.895 25.11 0.00 0.00 4.17
1614 1658 4.249020 CGGCGCTGTGTTGTTGCA 62.249 61.111 8.45 0.00 0.00 4.08
1615 1659 2.655044 GGCGCTGTGTTGTTGCAC 60.655 61.111 7.64 0.00 39.65 4.57
1616 1660 2.655044 GCGCTGTGTTGTTGCACC 60.655 61.111 0.00 0.00 38.52 5.01
1617 1661 2.352229 CGCTGTGTTGTTGCACCG 60.352 61.111 0.00 0.00 38.52 4.94
1618 1662 2.818487 CGCTGTGTTGTTGCACCGA 61.818 57.895 0.00 0.00 38.52 4.69
1619 1663 1.654220 GCTGTGTTGTTGCACCGAT 59.346 52.632 0.00 0.00 38.52 4.18
1620 1664 0.871722 GCTGTGTTGTTGCACCGATA 59.128 50.000 0.00 0.00 38.52 2.92
1621 1665 1.468520 GCTGTGTTGTTGCACCGATAT 59.531 47.619 0.00 0.00 38.52 1.63
1622 1666 2.675844 GCTGTGTTGTTGCACCGATATA 59.324 45.455 0.00 0.00 38.52 0.86
1623 1667 3.242413 GCTGTGTTGTTGCACCGATATAG 60.242 47.826 0.00 0.00 38.52 1.31
1624 1668 4.180817 CTGTGTTGTTGCACCGATATAGA 58.819 43.478 0.00 0.00 38.52 1.98
1625 1669 4.570930 TGTGTTGTTGCACCGATATAGAA 58.429 39.130 0.00 0.00 38.52 2.10
1626 1670 5.182487 TGTGTTGTTGCACCGATATAGAAT 58.818 37.500 0.00 0.00 38.52 2.40
1627 1671 6.342111 TGTGTTGTTGCACCGATATAGAATA 58.658 36.000 0.00 0.00 38.52 1.75
1628 1672 6.989759 TGTGTTGTTGCACCGATATAGAATAT 59.010 34.615 0.00 0.00 38.52 1.28
1629 1673 7.170828 TGTGTTGTTGCACCGATATAGAATATC 59.829 37.037 0.00 0.00 38.52 1.63
1630 1674 7.385205 GTGTTGTTGCACCGATATAGAATATCT 59.615 37.037 0.00 0.00 33.53 1.98
1631 1675 7.931407 TGTTGTTGCACCGATATAGAATATCTT 59.069 33.333 0.00 0.00 0.00 2.40
1632 1676 9.419297 GTTGTTGCACCGATATAGAATATCTTA 57.581 33.333 0.00 0.00 0.00 2.10
1633 1677 9.990360 TTGTTGCACCGATATAGAATATCTTAA 57.010 29.630 0.00 0.00 0.00 1.85
1634 1678 9.990360 TGTTGCACCGATATAGAATATCTTAAA 57.010 29.630 0.00 0.00 0.00 1.52
1652 1696 8.719560 ATCTTAAATTTTACTCTCGTCTTCCC 57.280 34.615 0.00 0.00 0.00 3.97
1686 1733 8.543862 TTAGAAAACTTTCGACCTATTCTTCC 57.456 34.615 5.36 0.00 41.92 3.46
1830 1905 1.199558 AGTAGACAGTCGGAAAGTCGC 59.800 52.381 0.00 4.11 37.36 5.19
1841 1916 0.389426 GAAAGTCGCCGTGCTAAGGA 60.389 55.000 0.00 0.00 0.00 3.36
1842 1917 0.249398 AAAGTCGCCGTGCTAAGGAT 59.751 50.000 0.00 0.00 0.00 3.24
1843 1918 1.108776 AAGTCGCCGTGCTAAGGATA 58.891 50.000 0.00 0.00 0.00 2.59
1922 1997 4.952335 GGAAGGATCCAACATGAAGACATT 59.048 41.667 15.82 0.00 45.79 2.71
1936 2011 4.915667 TGAAGACATTTGAACGTAGACGAG 59.084 41.667 9.41 0.00 43.02 4.18
1953 2028 1.471501 CGAGCAATGACCAGATCCGAA 60.472 52.381 0.00 0.00 0.00 4.30
2073 2149 2.859165 TTTCATCTTCAAGGAGCCGT 57.141 45.000 0.00 0.00 0.00 5.68
2076 2152 0.807667 CATCTTCAAGGAGCCGTCGG 60.808 60.000 6.99 6.99 0.00 4.79
2087 2163 4.778415 CCGTCGGTGTCTCGCCTG 62.778 72.222 2.08 0.00 0.00 4.85
2139 2223 2.403252 ACATCTAAAACGGAGCCCTG 57.597 50.000 0.00 0.00 0.00 4.45
2238 2322 2.840102 CGGGAGGCGAAGGATCCT 60.840 66.667 9.02 9.02 33.40 3.24
2240 2324 1.147153 GGGAGGCGAAGGATCCTTG 59.853 63.158 31.79 22.25 36.26 3.61
2241 2325 1.338136 GGGAGGCGAAGGATCCTTGA 61.338 60.000 31.79 0.00 36.26 3.02
2264 2348 2.704725 TTTGAAGATGAAGCAACGGC 57.295 45.000 0.00 0.00 41.61 5.68
2265 2349 1.603456 TTGAAGATGAAGCAACGGCA 58.397 45.000 0.00 0.00 44.61 5.69
2266 2350 1.825090 TGAAGATGAAGCAACGGCAT 58.175 45.000 0.00 0.00 44.61 4.40
2267 2351 2.161855 TGAAGATGAAGCAACGGCATT 58.838 42.857 0.00 0.00 44.61 3.56
2268 2352 2.557924 TGAAGATGAAGCAACGGCATTT 59.442 40.909 0.00 0.00 44.61 2.32
2269 2353 2.642139 AGATGAAGCAACGGCATTTG 57.358 45.000 0.00 0.00 44.61 2.32
2270 2354 2.161855 AGATGAAGCAACGGCATTTGA 58.838 42.857 0.87 0.00 44.61 2.69
2271 2355 2.756760 AGATGAAGCAACGGCATTTGAT 59.243 40.909 0.87 0.00 44.61 2.57
2272 2356 2.350899 TGAAGCAACGGCATTTGATG 57.649 45.000 0.87 0.00 44.61 3.07
2273 2357 1.612950 TGAAGCAACGGCATTTGATGT 59.387 42.857 0.87 0.00 44.61 3.06
2274 2358 2.035704 TGAAGCAACGGCATTTGATGTT 59.964 40.909 0.87 0.00 44.61 2.71
2275 2359 2.818130 AGCAACGGCATTTGATGTTT 57.182 40.000 0.87 0.00 44.61 2.83
2276 2360 2.406130 AGCAACGGCATTTGATGTTTG 58.594 42.857 0.87 0.00 44.61 2.93
2277 2361 1.460359 GCAACGGCATTTGATGTTTGG 59.540 47.619 0.87 0.00 40.72 3.28
2278 2362 2.753296 CAACGGCATTTGATGTTTGGT 58.247 42.857 0.00 0.00 0.00 3.67
2279 2363 2.437200 ACGGCATTTGATGTTTGGTG 57.563 45.000 0.00 0.00 0.00 4.17
2280 2364 1.686052 ACGGCATTTGATGTTTGGTGT 59.314 42.857 0.00 0.00 0.00 4.16
2281 2365 2.887783 ACGGCATTTGATGTTTGGTGTA 59.112 40.909 0.00 0.00 0.00 2.90
2282 2366 3.509575 ACGGCATTTGATGTTTGGTGTAT 59.490 39.130 0.00 0.00 0.00 2.29
2283 2367 4.021544 ACGGCATTTGATGTTTGGTGTATT 60.022 37.500 0.00 0.00 0.00 1.89
2284 2368 4.928615 CGGCATTTGATGTTTGGTGTATTT 59.071 37.500 0.00 0.00 0.00 1.40
2285 2369 5.163972 CGGCATTTGATGTTTGGTGTATTTG 60.164 40.000 0.00 0.00 0.00 2.32
2286 2370 5.931146 GGCATTTGATGTTTGGTGTATTTGA 59.069 36.000 0.00 0.00 0.00 2.69
2287 2371 6.091169 GGCATTTGATGTTTGGTGTATTTGAG 59.909 38.462 0.00 0.00 0.00 3.02
2288 2372 6.401367 GCATTTGATGTTTGGTGTATTTGAGC 60.401 38.462 0.00 0.00 0.00 4.26
2289 2373 6.403866 TTTGATGTTTGGTGTATTTGAGCT 57.596 33.333 0.00 0.00 0.00 4.09
2290 2374 7.517614 TTTGATGTTTGGTGTATTTGAGCTA 57.482 32.000 0.00 0.00 0.00 3.32
2291 2375 6.741992 TGATGTTTGGTGTATTTGAGCTAG 57.258 37.500 0.00 0.00 0.00 3.42
2292 2376 6.472016 TGATGTTTGGTGTATTTGAGCTAGA 58.528 36.000 0.00 0.00 0.00 2.43
2293 2377 6.371548 TGATGTTTGGTGTATTTGAGCTAGAC 59.628 38.462 0.00 0.00 0.00 2.59
2294 2378 5.865085 TGTTTGGTGTATTTGAGCTAGACT 58.135 37.500 0.00 0.00 0.00 3.24
2295 2379 6.296026 TGTTTGGTGTATTTGAGCTAGACTT 58.704 36.000 0.00 0.00 0.00 3.01
2296 2380 7.446769 TGTTTGGTGTATTTGAGCTAGACTTA 58.553 34.615 0.00 0.00 0.00 2.24
2297 2381 7.386848 TGTTTGGTGTATTTGAGCTAGACTTAC 59.613 37.037 0.00 0.00 0.00 2.34
2298 2382 6.852420 TGGTGTATTTGAGCTAGACTTACT 57.148 37.500 0.00 0.00 0.00 2.24
2299 2383 6.864342 TGGTGTATTTGAGCTAGACTTACTC 58.136 40.000 0.00 0.00 0.00 2.59
2300 2384 6.663953 TGGTGTATTTGAGCTAGACTTACTCT 59.336 38.462 0.00 0.00 0.00 3.24
2301 2385 7.178628 TGGTGTATTTGAGCTAGACTTACTCTT 59.821 37.037 0.00 0.00 0.00 2.85
2302 2386 7.489757 GGTGTATTTGAGCTAGACTTACTCTTG 59.510 40.741 0.00 0.00 0.00 3.02
2303 2387 8.030106 GTGTATTTGAGCTAGACTTACTCTTGT 58.970 37.037 0.00 0.00 0.00 3.16
2304 2388 8.585881 TGTATTTGAGCTAGACTTACTCTTGTT 58.414 33.333 0.00 0.00 0.00 2.83
2305 2389 9.425577 GTATTTGAGCTAGACTTACTCTTGTTT 57.574 33.333 0.00 0.00 0.00 2.83
2306 2390 8.910351 ATTTGAGCTAGACTTACTCTTGTTTT 57.090 30.769 0.00 0.00 0.00 2.43
2307 2391 7.948278 TTGAGCTAGACTTACTCTTGTTTTC 57.052 36.000 0.00 0.00 0.00 2.29
2308 2392 7.291411 TGAGCTAGACTTACTCTTGTTTTCT 57.709 36.000 0.00 0.00 0.00 2.52
2309 2393 7.727181 TGAGCTAGACTTACTCTTGTTTTCTT 58.273 34.615 0.00 0.00 0.00 2.52
2310 2394 8.204836 TGAGCTAGACTTACTCTTGTTTTCTTT 58.795 33.333 0.00 0.00 0.00 2.52
2311 2395 8.371770 AGCTAGACTTACTCTTGTTTTCTTTG 57.628 34.615 0.00 0.00 0.00 2.77
2312 2396 7.442666 AGCTAGACTTACTCTTGTTTTCTTTGG 59.557 37.037 0.00 0.00 0.00 3.28
2313 2397 7.441458 GCTAGACTTACTCTTGTTTTCTTTGGA 59.559 37.037 0.00 0.00 0.00 3.53
2314 2398 7.555306 AGACTTACTCTTGTTTTCTTTGGAC 57.445 36.000 0.00 0.00 0.00 4.02
2315 2399 7.339482 AGACTTACTCTTGTTTTCTTTGGACT 58.661 34.615 0.00 0.00 0.00 3.85
2316 2400 7.829706 AGACTTACTCTTGTTTTCTTTGGACTT 59.170 33.333 0.00 0.00 0.00 3.01
2317 2401 7.762382 ACTTACTCTTGTTTTCTTTGGACTTG 58.238 34.615 0.00 0.00 0.00 3.16
2318 2402 4.998788 ACTCTTGTTTTCTTTGGACTTGC 58.001 39.130 0.00 0.00 0.00 4.01
2319 2403 4.706962 ACTCTTGTTTTCTTTGGACTTGCT 59.293 37.500 0.00 0.00 0.00 3.91
2320 2404 5.885912 ACTCTTGTTTTCTTTGGACTTGCTA 59.114 36.000 0.00 0.00 0.00 3.49
2321 2405 6.038714 ACTCTTGTTTTCTTTGGACTTGCTAG 59.961 38.462 0.00 0.00 0.00 3.42
2322 2406 5.885912 TCTTGTTTTCTTTGGACTTGCTAGT 59.114 36.000 0.00 0.00 37.31 2.57
2323 2407 6.377146 TCTTGTTTTCTTTGGACTTGCTAGTT 59.623 34.615 1.43 0.00 33.84 2.24
2324 2408 7.554835 TCTTGTTTTCTTTGGACTTGCTAGTTA 59.445 33.333 1.43 0.00 33.84 2.24
2325 2409 7.023197 TGTTTTCTTTGGACTTGCTAGTTAC 57.977 36.000 1.43 0.00 33.84 2.50
2326 2410 6.826741 TGTTTTCTTTGGACTTGCTAGTTACT 59.173 34.615 1.43 0.00 33.84 2.24
2327 2411 7.988599 TGTTTTCTTTGGACTTGCTAGTTACTA 59.011 33.333 1.43 0.00 33.84 1.82
2328 2412 7.958053 TTTCTTTGGACTTGCTAGTTACTAC 57.042 36.000 1.43 0.00 33.84 2.73
2329 2413 6.912951 TCTTTGGACTTGCTAGTTACTACT 57.087 37.500 1.43 0.00 38.44 2.57
2330 2414 7.299246 TCTTTGGACTTGCTAGTTACTACTT 57.701 36.000 1.43 0.00 35.78 2.24
2331 2415 7.152645 TCTTTGGACTTGCTAGTTACTACTTG 58.847 38.462 1.43 0.00 35.78 3.16
2332 2416 5.401531 TGGACTTGCTAGTTACTACTTGG 57.598 43.478 1.43 0.00 35.78 3.61
2333 2417 4.836736 TGGACTTGCTAGTTACTACTTGGT 59.163 41.667 1.43 0.00 35.78 3.67
2334 2418 5.047519 TGGACTTGCTAGTTACTACTTGGTC 60.048 44.000 1.43 0.00 35.78 4.02
2335 2419 5.185442 GGACTTGCTAGTTACTACTTGGTCT 59.815 44.000 1.43 0.00 35.78 3.85
2336 2420 6.270156 ACTTGCTAGTTACTACTTGGTCTC 57.730 41.667 0.00 0.00 35.78 3.36
2337 2421 6.011481 ACTTGCTAGTTACTACTTGGTCTCT 58.989 40.000 0.00 0.00 35.78 3.10
2338 2422 6.151480 ACTTGCTAGTTACTACTTGGTCTCTC 59.849 42.308 0.00 0.00 35.78 3.20
2339 2423 5.817784 TGCTAGTTACTACTTGGTCTCTCT 58.182 41.667 0.00 0.00 35.78 3.10
2340 2424 6.246919 TGCTAGTTACTACTTGGTCTCTCTT 58.753 40.000 0.00 0.00 35.78 2.85
2341 2425 6.720288 TGCTAGTTACTACTTGGTCTCTCTTT 59.280 38.462 0.00 0.00 35.78 2.52
2342 2426 7.886970 TGCTAGTTACTACTTGGTCTCTCTTTA 59.113 37.037 0.00 0.00 35.78 1.85
2343 2427 8.905850 GCTAGTTACTACTTGGTCTCTCTTTAT 58.094 37.037 0.00 0.00 35.78 1.40
2346 2430 9.310449 AGTTACTACTTGGTCTCTCTTTATTCA 57.690 33.333 0.00 0.00 0.00 2.57
2353 2437 8.897752 ACTTGGTCTCTCTTTATTCATATTTGC 58.102 33.333 0.00 0.00 0.00 3.68
2354 2438 9.118300 CTTGGTCTCTCTTTATTCATATTTGCT 57.882 33.333 0.00 0.00 0.00 3.91
2387 2471 8.980481 AGTTGTCTCAAAATTAAGAGGAAAGA 57.020 30.769 7.09 0.00 32.76 2.52
2388 2472 9.408648 AGTTGTCTCAAAATTAAGAGGAAAGAA 57.591 29.630 7.09 0.00 32.76 2.52
2389 2473 9.670719 GTTGTCTCAAAATTAAGAGGAAAGAAG 57.329 33.333 7.09 0.00 32.76 2.85
2390 2474 7.875971 TGTCTCAAAATTAAGAGGAAAGAAGC 58.124 34.615 7.09 0.00 32.76 3.86
2391 2475 7.502226 TGTCTCAAAATTAAGAGGAAAGAAGCA 59.498 33.333 7.09 0.00 32.76 3.91
2392 2476 8.352942 GTCTCAAAATTAAGAGGAAAGAAGCAA 58.647 33.333 7.09 0.00 32.76 3.91
2393 2477 8.912988 TCTCAAAATTAAGAGGAAAGAAGCAAA 58.087 29.630 7.09 0.00 32.76 3.68
2394 2478 8.871686 TCAAAATTAAGAGGAAAGAAGCAAAC 57.128 30.769 0.00 0.00 0.00 2.93
2395 2479 7.926018 TCAAAATTAAGAGGAAAGAAGCAAACC 59.074 33.333 0.00 0.00 0.00 3.27
2396 2480 5.984695 ATTAAGAGGAAAGAAGCAAACCC 57.015 39.130 0.00 0.00 0.00 4.11
2397 2481 2.294449 AGAGGAAAGAAGCAAACCCC 57.706 50.000 0.00 0.00 0.00 4.95
2398 2482 1.499007 AGAGGAAAGAAGCAAACCCCA 59.501 47.619 0.00 0.00 0.00 4.96
2399 2483 1.889170 GAGGAAAGAAGCAAACCCCAG 59.111 52.381 0.00 0.00 0.00 4.45
2400 2484 0.969149 GGAAAGAAGCAAACCCCAGG 59.031 55.000 0.00 0.00 0.00 4.45
2401 2485 0.318441 GAAAGAAGCAAACCCCAGGC 59.682 55.000 0.00 0.00 0.00 4.85
2402 2486 1.121407 AAAGAAGCAAACCCCAGGCC 61.121 55.000 0.00 0.00 0.00 5.19
2403 2487 2.203625 GAAGCAAACCCCAGGCCA 60.204 61.111 5.01 0.00 0.00 5.36
2404 2488 1.836604 GAAGCAAACCCCAGGCCAA 60.837 57.895 5.01 0.00 0.00 4.52
2405 2489 1.383803 AAGCAAACCCCAGGCCAAA 60.384 52.632 5.01 0.00 0.00 3.28
2406 2490 0.985490 AAGCAAACCCCAGGCCAAAA 60.985 50.000 5.01 0.00 0.00 2.44
2407 2491 0.985490 AGCAAACCCCAGGCCAAAAA 60.985 50.000 5.01 0.00 0.00 1.94
2430 2514 3.681593 TGGCAACATGGAATTCTTTGG 57.318 42.857 5.23 0.00 46.17 3.28
2431 2515 2.289569 TGGCAACATGGAATTCTTTGGC 60.290 45.455 19.56 19.56 46.17 4.52
2432 2516 2.289569 GGCAACATGGAATTCTTTGGCA 60.290 45.455 20.56 7.31 41.17 4.92
2433 2517 2.738314 GCAACATGGAATTCTTTGGCAC 59.262 45.455 5.23 0.00 0.00 5.01
2434 2518 3.555586 GCAACATGGAATTCTTTGGCACT 60.556 43.478 5.23 0.00 0.00 4.40
2435 2519 4.634199 CAACATGGAATTCTTTGGCACTT 58.366 39.130 5.23 0.00 0.00 3.16
2436 2520 5.782047 CAACATGGAATTCTTTGGCACTTA 58.218 37.500 5.23 0.00 0.00 2.24
2437 2521 6.222389 CAACATGGAATTCTTTGGCACTTAA 58.778 36.000 5.23 0.00 0.00 1.85
2438 2522 5.783111 ACATGGAATTCTTTGGCACTTAAC 58.217 37.500 5.23 0.00 0.00 2.01
2439 2523 5.539955 ACATGGAATTCTTTGGCACTTAACT 59.460 36.000 5.23 0.00 0.00 2.24
2440 2524 6.719370 ACATGGAATTCTTTGGCACTTAACTA 59.281 34.615 5.23 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.597813 ACGAAATTCATGAGCCGATATTC 57.402 39.130 12.67 4.17 0.00 1.75
2 3 5.527214 TGAACGAAATTCATGAGCCGATATT 59.473 36.000 12.67 0.00 42.62 1.28
3 4 5.056480 TGAACGAAATTCATGAGCCGATAT 58.944 37.500 12.67 0.00 42.62 1.63
5 6 3.270027 TGAACGAAATTCATGAGCCGAT 58.730 40.909 12.67 3.79 42.62 4.18
7 8 3.469899 TTGAACGAAATTCATGAGCCG 57.530 42.857 0.00 1.27 46.80 5.52
8 9 6.470235 CACTAATTGAACGAAATTCATGAGCC 59.530 38.462 0.00 0.00 46.80 4.70
9 10 7.243487 TCACTAATTGAACGAAATTCATGAGC 58.757 34.615 0.00 0.00 46.80 4.26
10 11 9.611284 TTTCACTAATTGAACGAAATTCATGAG 57.389 29.630 0.00 0.00 46.80 2.90
11 12 9.958234 TTTTCACTAATTGAACGAAATTCATGA 57.042 25.926 0.00 0.00 46.80 3.07
14 15 8.698854 GCATTTTCACTAATTGAACGAAATTCA 58.301 29.630 0.00 0.00 44.28 2.57
15 16 7.887709 CGCATTTTCACTAATTGAACGAAATTC 59.112 33.333 0.00 0.00 44.28 2.17
16 17 7.593273 TCGCATTTTCACTAATTGAACGAAATT 59.407 29.630 0.00 0.00 44.28 1.82
17 18 7.081349 TCGCATTTTCACTAATTGAACGAAAT 58.919 30.769 0.00 0.00 44.28 2.17
18 19 6.431278 TCGCATTTTCACTAATTGAACGAAA 58.569 32.000 0.00 0.00 44.28 3.46
19 20 5.991568 TCGCATTTTCACTAATTGAACGAA 58.008 33.333 0.00 0.00 44.28 3.85
20 21 5.599359 TCGCATTTTCACTAATTGAACGA 57.401 34.783 0.00 0.00 44.28 3.85
21 22 6.853279 AATCGCATTTTCACTAATTGAACG 57.147 33.333 0.00 0.00 44.28 3.95
22 23 8.226543 TCAAATCGCATTTTCACTAATTGAAC 57.773 30.769 0.00 0.00 44.28 3.18
23 24 8.809159 TTCAAATCGCATTTTCACTAATTGAA 57.191 26.923 0.00 0.00 42.83 2.69
24 25 8.809159 TTTCAAATCGCATTTTCACTAATTGA 57.191 26.923 0.00 0.00 0.00 2.57
30 31 8.971321 GCATATATTTCAAATCGCATTTTCACT 58.029 29.630 0.00 0.00 0.00 3.41
31 32 7.940960 CGCATATATTTCAAATCGCATTTTCAC 59.059 33.333 0.00 0.00 0.00 3.18
32 33 7.114670 CCGCATATATTTCAAATCGCATTTTCA 59.885 33.333 0.00 0.00 0.00 2.69
33 34 7.114811 ACCGCATATATTTCAAATCGCATTTTC 59.885 33.333 0.00 0.00 0.00 2.29
34 35 6.922957 ACCGCATATATTTCAAATCGCATTTT 59.077 30.769 0.00 0.00 0.00 1.82
35 36 6.446318 ACCGCATATATTTCAAATCGCATTT 58.554 32.000 0.00 0.00 0.00 2.32
36 37 6.012658 ACCGCATATATTTCAAATCGCATT 57.987 33.333 0.00 0.00 0.00 3.56
37 38 5.627499 ACCGCATATATTTCAAATCGCAT 57.373 34.783 0.00 0.00 0.00 4.73
38 39 5.431420 AACCGCATATATTTCAAATCGCA 57.569 34.783 0.00 0.00 0.00 5.10
39 40 5.503376 CGTAACCGCATATATTTCAAATCGC 59.497 40.000 0.00 0.00 0.00 4.58
40 41 6.013085 CCGTAACCGCATATATTTCAAATCG 58.987 40.000 0.00 0.00 0.00 3.34
41 42 6.894828 ACCGTAACCGCATATATTTCAAATC 58.105 36.000 0.00 0.00 0.00 2.17
42 43 6.870971 ACCGTAACCGCATATATTTCAAAT 57.129 33.333 0.00 0.00 0.00 2.32
43 44 6.458478 CCAACCGTAACCGCATATATTTCAAA 60.458 38.462 0.00 0.00 0.00 2.69
44 45 5.007823 CCAACCGTAACCGCATATATTTCAA 59.992 40.000 0.00 0.00 0.00 2.69
45 46 4.512198 CCAACCGTAACCGCATATATTTCA 59.488 41.667 0.00 0.00 0.00 2.69
46 47 4.751098 TCCAACCGTAACCGCATATATTTC 59.249 41.667 0.00 0.00 0.00 2.17
47 48 4.706035 TCCAACCGTAACCGCATATATTT 58.294 39.130 0.00 0.00 0.00 1.40
48 49 4.339872 TCCAACCGTAACCGCATATATT 57.660 40.909 0.00 0.00 0.00 1.28
49 50 4.020928 TCATCCAACCGTAACCGCATATAT 60.021 41.667 0.00 0.00 0.00 0.86
50 51 3.321396 TCATCCAACCGTAACCGCATATA 59.679 43.478 0.00 0.00 0.00 0.86
51 52 2.103432 TCATCCAACCGTAACCGCATAT 59.897 45.455 0.00 0.00 0.00 1.78
52 53 1.481363 TCATCCAACCGTAACCGCATA 59.519 47.619 0.00 0.00 0.00 3.14
53 54 0.250793 TCATCCAACCGTAACCGCAT 59.749 50.000 0.00 0.00 0.00 4.73
54 55 0.671163 GTCATCCAACCGTAACCGCA 60.671 55.000 0.00 0.00 0.00 5.69
55 56 1.689352 CGTCATCCAACCGTAACCGC 61.689 60.000 0.00 0.00 0.00 5.68
56 57 0.388907 ACGTCATCCAACCGTAACCG 60.389 55.000 0.00 0.00 32.22 4.44
57 58 1.067354 AGACGTCATCCAACCGTAACC 60.067 52.381 19.50 0.00 34.51 2.85
58 59 2.358939 AGACGTCATCCAACCGTAAC 57.641 50.000 19.50 0.00 34.51 2.50
59 60 3.319755 GAAAGACGTCATCCAACCGTAA 58.680 45.455 19.50 0.00 34.51 3.18
60 61 2.353011 GGAAAGACGTCATCCAACCGTA 60.353 50.000 26.55 0.00 34.51 4.02
61 62 1.607251 GGAAAGACGTCATCCAACCGT 60.607 52.381 26.55 0.00 37.56 4.83
62 63 1.076332 GGAAAGACGTCATCCAACCG 58.924 55.000 26.55 0.00 33.30 4.44
63 64 1.076332 CGGAAAGACGTCATCCAACC 58.924 55.000 28.92 17.49 32.58 3.77
64 65 0.442699 GCGGAAAGACGTCATCCAAC 59.557 55.000 28.92 20.50 35.98 3.77
65 66 0.034198 TGCGGAAAGACGTCATCCAA 59.966 50.000 28.92 18.83 35.98 3.53
66 67 0.669318 GTGCGGAAAGACGTCATCCA 60.669 55.000 28.92 15.21 35.98 3.41
67 68 0.389948 AGTGCGGAAAGACGTCATCC 60.390 55.000 23.42 23.42 35.98 3.51
68 69 0.992802 GAGTGCGGAAAGACGTCATC 59.007 55.000 19.50 15.00 35.98 2.92
69 70 0.732880 CGAGTGCGGAAAGACGTCAT 60.733 55.000 19.50 1.86 35.98 3.06
70 71 1.371267 CGAGTGCGGAAAGACGTCA 60.371 57.895 19.50 0.00 35.98 4.35
71 72 1.371389 ACGAGTGCGGAAAGACGTC 60.371 57.895 7.70 7.70 43.17 4.34
72 73 1.660575 CACGAGTGCGGAAAGACGT 60.661 57.895 0.00 0.00 43.17 4.34
73 74 1.213094 AACACGAGTGCGGAAAGACG 61.213 55.000 2.76 0.00 43.17 4.18
74 75 0.507358 GAACACGAGTGCGGAAAGAC 59.493 55.000 2.76 0.00 43.17 3.01
75 76 0.937699 CGAACACGAGTGCGGAAAGA 60.938 55.000 5.34 0.00 43.27 2.52
76 77 1.487231 CGAACACGAGTGCGGAAAG 59.513 57.895 5.34 0.00 43.27 2.62
77 78 3.620286 CGAACACGAGTGCGGAAA 58.380 55.556 5.34 0.00 43.27 3.13
82 83 3.764049 GTCCGCGAACACGAGTGC 61.764 66.667 8.23 0.00 34.06 4.40
83 84 2.050351 AGTCCGCGAACACGAGTG 60.050 61.111 8.23 1.13 34.06 3.51
84 85 2.050351 CAGTCCGCGAACACGAGT 60.050 61.111 8.23 0.00 34.06 4.18
85 86 2.805353 CCAGTCCGCGAACACGAG 60.805 66.667 8.23 0.00 34.06 4.18
86 87 3.547249 GACCAGTCCGCGAACACGA 62.547 63.158 8.23 0.00 34.06 4.35
87 88 3.103911 GACCAGTCCGCGAACACG 61.104 66.667 8.23 0.00 0.00 4.49
88 89 2.737376 GGACCAGTCCGCGAACAC 60.737 66.667 8.23 0.27 40.36 3.32
97 98 5.594725 TCTGTATGTGAATAGAGGACCAGTC 59.405 44.000 0.00 0.00 0.00 3.51
98 99 5.519808 TCTGTATGTGAATAGAGGACCAGT 58.480 41.667 0.00 0.00 0.00 4.00
99 100 6.453943 CATCTGTATGTGAATAGAGGACCAG 58.546 44.000 0.00 0.00 0.00 4.00
100 101 5.221521 GCATCTGTATGTGAATAGAGGACCA 60.222 44.000 0.00 0.00 35.38 4.02
101 102 5.233988 GCATCTGTATGTGAATAGAGGACC 58.766 45.833 0.00 0.00 35.38 4.46
102 103 4.920340 CGCATCTGTATGTGAATAGAGGAC 59.080 45.833 0.00 0.00 44.81 3.85
103 104 4.827284 TCGCATCTGTATGTGAATAGAGGA 59.173 41.667 0.00 0.00 46.87 3.71
104 105 5.126396 TCGCATCTGTATGTGAATAGAGG 57.874 43.478 0.00 0.00 46.87 3.69
112 113 6.834959 AATTTACTCTCGCATCTGTATGTG 57.165 37.500 0.00 0.00 43.63 3.21
113 114 6.238211 GCAAATTTACTCTCGCATCTGTATGT 60.238 38.462 0.00 0.00 35.38 2.29
114 115 6.132056 GCAAATTTACTCTCGCATCTGTATG 58.868 40.000 0.00 0.00 36.09 2.39
115 116 5.050769 CGCAAATTTACTCTCGCATCTGTAT 60.051 40.000 0.00 0.00 0.00 2.29
116 117 4.267690 CGCAAATTTACTCTCGCATCTGTA 59.732 41.667 0.00 0.00 0.00 2.74
117 118 3.062639 CGCAAATTTACTCTCGCATCTGT 59.937 43.478 0.00 0.00 0.00 3.41
118 119 3.544834 CCGCAAATTTACTCTCGCATCTG 60.545 47.826 0.00 0.00 0.00 2.90
119 120 2.609459 CCGCAAATTTACTCTCGCATCT 59.391 45.455 0.00 0.00 0.00 2.90
120 121 2.286418 CCCGCAAATTTACTCTCGCATC 60.286 50.000 0.00 0.00 0.00 3.91
121 122 1.670811 CCCGCAAATTTACTCTCGCAT 59.329 47.619 0.00 0.00 0.00 4.73
122 123 1.083489 CCCGCAAATTTACTCTCGCA 58.917 50.000 0.00 0.00 0.00 5.10
123 124 0.377203 CCCCGCAAATTTACTCTCGC 59.623 55.000 0.00 0.00 0.00 5.03
124 125 1.014352 CCCCCGCAAATTTACTCTCG 58.986 55.000 0.00 0.00 0.00 4.04
161 163 1.001597 CGGCCGACTATTCTGTACCTC 60.002 57.143 24.07 0.00 0.00 3.85
169 171 3.650139 ACATTGATACGGCCGACTATTC 58.350 45.455 35.90 19.57 0.00 1.75
224 227 1.673033 GCGACAGAGTAATGCACCTGT 60.673 52.381 0.00 0.00 39.74 4.00
303 310 2.230266 GAGACTGTTCCTGACTCCTGTC 59.770 54.545 0.00 0.00 43.20 3.51
395 403 1.268352 TGAGGCATTTTTCCCGTTTCG 59.732 47.619 0.00 0.00 0.00 3.46
408 416 5.750352 ATGGATTTTTCTTTGTGAGGCAT 57.250 34.783 0.00 0.00 0.00 4.40
409 417 5.305128 AGAATGGATTTTTCTTTGTGAGGCA 59.695 36.000 0.00 0.00 29.12 4.75
410 418 5.787380 AGAATGGATTTTTCTTTGTGAGGC 58.213 37.500 0.00 0.00 29.12 4.70
412 420 6.865205 GTGGAGAATGGATTTTTCTTTGTGAG 59.135 38.462 0.00 0.00 33.65 3.51
413 421 6.514870 CGTGGAGAATGGATTTTTCTTTGTGA 60.515 38.462 0.00 0.00 33.65 3.58
414 422 5.630680 CGTGGAGAATGGATTTTTCTTTGTG 59.369 40.000 0.00 0.00 33.65 3.33
416 424 5.163513 CCGTGGAGAATGGATTTTTCTTTG 58.836 41.667 0.00 0.00 37.06 2.77
426 438 1.229368 TGGGACCGTGGAGAATGGA 60.229 57.895 0.00 0.00 38.47 3.41
452 464 0.690762 ACAAGTGCCGGTACTTCCAT 59.309 50.000 31.94 18.86 38.78 3.41
454 466 1.274447 AGTACAAGTGCCGGTACTTCC 59.726 52.381 31.94 22.15 45.86 3.46
491 504 5.887754 ACAGTATATTTGGTGGGAGTTGTT 58.112 37.500 0.00 0.00 0.00 2.83
492 505 5.514500 ACAGTATATTTGGTGGGAGTTGT 57.486 39.130 0.00 0.00 0.00 3.32
493 506 5.357032 GGAACAGTATATTTGGTGGGAGTTG 59.643 44.000 0.00 0.00 0.00 3.16
564 577 5.091261 ACTGGATCGCTGGAATATTATCC 57.909 43.478 5.93 5.93 40.10 2.59
566 579 5.247110 ACAGACTGGATCGCTGGAATATTAT 59.753 40.000 7.51 0.00 34.05 1.28
763 779 3.056328 GTTCGGCTCCACTTGGCC 61.056 66.667 0.00 0.00 44.43 5.36
820 836 2.002586 CTTGGTTATGTCTGCGAGGTG 58.997 52.381 0.00 0.00 0.00 4.00
822 838 1.656652 CCTTGGTTATGTCTGCGAGG 58.343 55.000 0.00 0.00 0.00 4.63
823 839 1.656652 CCCTTGGTTATGTCTGCGAG 58.343 55.000 0.00 0.00 0.00 5.03
830 854 3.454812 AGACTATTCGCCCTTGGTTATGT 59.545 43.478 0.00 0.00 0.00 2.29
831 855 3.809832 CAGACTATTCGCCCTTGGTTATG 59.190 47.826 0.00 0.00 0.00 1.90
885 909 0.988063 GGTCTGGGAGAGAAAAGGCT 59.012 55.000 0.00 0.00 30.26 4.58
901 925 1.251251 ATCCTGTTTGCTGCAAGGTC 58.749 50.000 15.39 10.51 0.00 3.85
962 990 4.530857 CTTGCTACCTCGGGGCCG 62.531 72.222 0.00 0.00 41.35 6.13
965 1001 1.961180 CTCACCTTGCTACCTCGGGG 61.961 65.000 0.00 0.00 38.88 5.73
969 1005 1.751924 ACGATCTCACCTTGCTACCTC 59.248 52.381 0.00 0.00 0.00 3.85
973 1009 1.132453 CACGACGATCTCACCTTGCTA 59.868 52.381 0.00 0.00 0.00 3.49
974 1010 0.109086 CACGACGATCTCACCTTGCT 60.109 55.000 0.00 0.00 0.00 3.91
977 1013 0.168348 CGACACGACGATCTCACCTT 59.832 55.000 0.00 0.00 35.09 3.50
983 1019 3.122971 TCGCCGACACGACGATCT 61.123 61.111 0.00 0.00 36.78 2.75
1028 1064 4.047125 CCAGGAACCCCGCCATGT 62.047 66.667 0.00 0.00 37.58 3.21
1035 1071 1.128188 ACACTCTGACCAGGAACCCC 61.128 60.000 0.00 0.00 0.00 4.95
1045 1081 0.734253 CAGCCGCTGTACACTCTGAC 60.734 60.000 12.54 0.00 0.00 3.51
1419 1455 3.114616 CTGAACGTGGCTCGGCAG 61.115 66.667 13.91 14.99 44.69 4.85
1428 1464 0.852777 CTCAACGTCACCTGAACGTG 59.147 55.000 1.73 0.00 40.16 4.49
1473 1510 1.796355 CTCCACTGTGTCGCGTACG 60.796 63.158 11.84 11.84 42.01 3.67
1475 1512 1.284715 CACTCCACTGTGTCGCGTA 59.715 57.895 5.77 0.00 33.61 4.42
1528 1572 6.432783 TGTGGTCACTCTTTCTCAAAGAAAAA 59.567 34.615 3.92 0.00 46.13 1.94
1548 1592 1.014352 GAACTTGTCAACGCTGTGGT 58.986 50.000 0.00 0.00 0.00 4.16
1554 1598 2.604614 GGTGGAATGAACTTGTCAACGC 60.605 50.000 0.00 0.00 40.50 4.84
1555 1599 2.349438 CGGTGGAATGAACTTGTCAACG 60.349 50.000 0.00 0.00 40.50 4.10
1562 1606 1.871039 CACGTTCGGTGGAATGAACTT 59.129 47.619 3.27 0.00 43.16 2.66
1580 1624 0.601057 CCGTTGAATTTCCCACCCAC 59.399 55.000 0.00 0.00 0.00 4.61
1585 1629 1.602323 AGCGCCGTTGAATTTCCCA 60.602 52.632 2.29 0.00 0.00 4.37
1588 1632 0.040425 ACACAGCGCCGTTGAATTTC 60.040 50.000 8.25 0.00 0.00 2.17
1591 1635 1.282570 CAACACAGCGCCGTTGAAT 59.717 52.632 23.28 4.10 44.20 2.57
1593 1637 2.109739 AACAACACAGCGCCGTTGA 61.110 52.632 30.26 0.00 44.20 3.18
1596 1640 4.250431 GCAACAACACAGCGCCGT 62.250 61.111 2.29 0.00 0.00 5.68
1597 1641 4.249020 TGCAACAACACAGCGCCG 62.249 61.111 2.29 0.00 0.00 6.46
1599 1643 2.655044 GGTGCAACAACACAGCGC 60.655 61.111 0.00 0.00 42.55 5.92
1601 1645 0.871722 TATCGGTGCAACAACACAGC 59.128 50.000 0.98 0.00 42.55 4.40
1602 1646 4.180817 TCTATATCGGTGCAACAACACAG 58.819 43.478 0.98 0.00 42.55 3.66
1603 1647 4.195225 TCTATATCGGTGCAACAACACA 57.805 40.909 0.98 0.00 42.55 3.72
1604 1648 5.734855 ATTCTATATCGGTGCAACAACAC 57.265 39.130 0.98 0.00 39.98 3.32
1605 1649 7.441836 AGATATTCTATATCGGTGCAACAACA 58.558 34.615 0.98 0.00 39.98 3.33
1606 1650 7.891183 AGATATTCTATATCGGTGCAACAAC 57.109 36.000 0.98 0.00 39.98 3.32
1607 1651 9.990360 TTAAGATATTCTATATCGGTGCAACAA 57.010 29.630 0.98 0.00 39.98 2.83
1608 1652 9.990360 TTTAAGATATTCTATATCGGTGCAACA 57.010 29.630 0.98 0.00 39.98 3.33
1676 1723 5.688807 ACACCATGATTGAGGAAGAATAGG 58.311 41.667 0.00 0.00 0.00 2.57
1686 1733 4.450757 TGTTCGTTGTACACCATGATTGAG 59.549 41.667 0.00 0.00 0.00 3.02
1789 1838 3.014085 AACCCGACGATGATGGCGT 62.014 57.895 0.00 0.00 45.79 5.68
1801 1850 2.079158 CGACTGTCTACTACAACCCGA 58.921 52.381 6.21 0.00 37.74 5.14
1804 1853 4.022503 ACTTTCCGACTGTCTACTACAACC 60.023 45.833 6.21 0.00 37.74 3.77
1830 1905 3.056749 GGTCCTATGTATCCTTAGCACGG 60.057 52.174 0.00 0.00 0.00 4.94
1841 1916 0.393077 GGTGCGCTGGTCCTATGTAT 59.607 55.000 9.73 0.00 0.00 2.29
1842 1917 0.973496 TGGTGCGCTGGTCCTATGTA 60.973 55.000 9.73 0.00 0.00 2.29
1843 1918 2.244117 CTGGTGCGCTGGTCCTATGT 62.244 60.000 9.73 0.00 0.00 2.29
1912 1987 5.466819 TCGTCTACGTTCAAATGTCTTCAT 58.533 37.500 0.00 0.00 40.80 2.57
1922 1997 2.984471 GTCATTGCTCGTCTACGTTCAA 59.016 45.455 0.00 8.19 40.80 2.69
1936 2011 1.737838 TGTTCGGATCTGGTCATTGC 58.262 50.000 0.62 0.00 0.00 3.56
1953 2028 8.321353 TGATAGATCTGTCTTTGGTGTATTTGT 58.679 33.333 18.91 0.00 35.87 2.83
2065 2141 3.063084 GAGACACCGACGGCTCCT 61.063 66.667 15.39 8.06 0.00 3.69
2073 2149 3.931190 TAGGCAGGCGAGACACCGA 62.931 63.158 0.00 0.00 0.00 4.69
2076 2152 1.811679 GCTTAGGCAGGCGAGACAC 60.812 63.158 4.84 0.00 38.54 3.67
2087 2163 2.370189 AGGATATGTGTCCTGCTTAGGC 59.630 50.000 0.00 0.00 46.76 3.93
2105 2181 9.151471 CGTTTTAGATGTTTCTTTGAGATAGGA 57.849 33.333 0.00 0.00 33.17 2.94
2188 2272 1.979155 CAGTCTGCCTCGTCTCCCA 60.979 63.158 0.00 0.00 0.00 4.37
2219 2303 3.849951 GATCCTTCGCCTCCCGCA 61.850 66.667 0.00 0.00 37.30 5.69
2249 2333 2.557924 TCAAATGCCGTTGCTTCATCTT 59.442 40.909 0.00 0.00 38.71 2.40
2250 2334 2.161855 TCAAATGCCGTTGCTTCATCT 58.838 42.857 0.00 0.00 38.71 2.90
2253 2337 1.612950 ACATCAAATGCCGTTGCTTCA 59.387 42.857 0.00 0.00 38.71 3.02
2255 2339 2.801679 CAAACATCAAATGCCGTTGCTT 59.198 40.909 0.00 0.00 38.71 3.91
2256 2340 2.406130 CAAACATCAAATGCCGTTGCT 58.594 42.857 0.00 0.00 38.71 3.91
2257 2341 1.460359 CCAAACATCAAATGCCGTTGC 59.540 47.619 0.00 0.00 38.26 4.17
2258 2342 2.475864 CACCAAACATCAAATGCCGTTG 59.524 45.455 0.00 0.00 0.00 4.10
2259 2343 2.102252 ACACCAAACATCAAATGCCGTT 59.898 40.909 0.00 0.00 0.00 4.44
2260 2344 1.686052 ACACCAAACATCAAATGCCGT 59.314 42.857 0.00 0.00 0.00 5.68
2261 2345 2.437200 ACACCAAACATCAAATGCCG 57.563 45.000 0.00 0.00 0.00 5.69
2262 2346 5.931146 TCAAATACACCAAACATCAAATGCC 59.069 36.000 0.00 0.00 0.00 4.40
2263 2347 6.401367 GCTCAAATACACCAAACATCAAATGC 60.401 38.462 0.00 0.00 0.00 3.56
2264 2348 6.869913 AGCTCAAATACACCAAACATCAAATG 59.130 34.615 0.00 0.00 0.00 2.32
2265 2349 6.996509 AGCTCAAATACACCAAACATCAAAT 58.003 32.000 0.00 0.00 0.00 2.32
2266 2350 6.403866 AGCTCAAATACACCAAACATCAAA 57.596 33.333 0.00 0.00 0.00 2.69
2267 2351 6.939730 TCTAGCTCAAATACACCAAACATCAA 59.060 34.615 0.00 0.00 0.00 2.57
2268 2352 6.371548 GTCTAGCTCAAATACACCAAACATCA 59.628 38.462 0.00 0.00 0.00 3.07
2269 2353 6.595716 AGTCTAGCTCAAATACACCAAACATC 59.404 38.462 0.00 0.00 0.00 3.06
2270 2354 6.476378 AGTCTAGCTCAAATACACCAAACAT 58.524 36.000 0.00 0.00 0.00 2.71
2271 2355 5.865085 AGTCTAGCTCAAATACACCAAACA 58.135 37.500 0.00 0.00 0.00 2.83
2272 2356 6.803154 AAGTCTAGCTCAAATACACCAAAC 57.197 37.500 0.00 0.00 0.00 2.93
2273 2357 7.676947 AGTAAGTCTAGCTCAAATACACCAAA 58.323 34.615 0.00 0.00 0.00 3.28
2274 2358 7.178628 AGAGTAAGTCTAGCTCAAATACACCAA 59.821 37.037 0.00 0.00 31.71 3.67
2275 2359 6.663953 AGAGTAAGTCTAGCTCAAATACACCA 59.336 38.462 0.00 0.00 31.71 4.17
2276 2360 7.102847 AGAGTAAGTCTAGCTCAAATACACC 57.897 40.000 0.00 0.00 31.71 4.16
2277 2361 8.030106 ACAAGAGTAAGTCTAGCTCAAATACAC 58.970 37.037 0.00 0.00 32.65 2.90
2278 2362 8.123639 ACAAGAGTAAGTCTAGCTCAAATACA 57.876 34.615 0.00 0.00 32.65 2.29
2279 2363 8.989653 AACAAGAGTAAGTCTAGCTCAAATAC 57.010 34.615 0.00 0.00 32.65 1.89
2280 2364 9.998106 AAAACAAGAGTAAGTCTAGCTCAAATA 57.002 29.630 0.00 0.00 32.65 1.40
2281 2365 8.910351 AAAACAAGAGTAAGTCTAGCTCAAAT 57.090 30.769 0.00 0.00 32.65 2.32
2282 2366 8.204836 AGAAAACAAGAGTAAGTCTAGCTCAAA 58.795 33.333 0.00 0.00 32.65 2.69
2283 2367 7.727181 AGAAAACAAGAGTAAGTCTAGCTCAA 58.273 34.615 0.00 0.00 32.65 3.02
2284 2368 7.291411 AGAAAACAAGAGTAAGTCTAGCTCA 57.709 36.000 0.00 0.00 32.65 4.26
2285 2369 8.491950 CAAAGAAAACAAGAGTAAGTCTAGCTC 58.508 37.037 0.00 0.00 32.65 4.09
2286 2370 7.442666 CCAAAGAAAACAAGAGTAAGTCTAGCT 59.557 37.037 0.00 0.00 32.65 3.32
2287 2371 7.441458 TCCAAAGAAAACAAGAGTAAGTCTAGC 59.559 37.037 0.00 0.00 32.65 3.42
2288 2372 8.766151 GTCCAAAGAAAACAAGAGTAAGTCTAG 58.234 37.037 0.00 0.00 32.65 2.43
2289 2373 8.483758 AGTCCAAAGAAAACAAGAGTAAGTCTA 58.516 33.333 0.00 0.00 32.65 2.59
2290 2374 7.339482 AGTCCAAAGAAAACAAGAGTAAGTCT 58.661 34.615 0.00 0.00 36.94 3.24
2291 2375 7.555306 AGTCCAAAGAAAACAAGAGTAAGTC 57.445 36.000 0.00 0.00 0.00 3.01
2292 2376 7.628580 GCAAGTCCAAAGAAAACAAGAGTAAGT 60.629 37.037 0.00 0.00 0.00 2.24
2293 2377 6.693113 GCAAGTCCAAAGAAAACAAGAGTAAG 59.307 38.462 0.00 0.00 0.00 2.34
2294 2378 6.377146 AGCAAGTCCAAAGAAAACAAGAGTAA 59.623 34.615 0.00 0.00 0.00 2.24
2295 2379 5.885912 AGCAAGTCCAAAGAAAACAAGAGTA 59.114 36.000 0.00 0.00 0.00 2.59
2296 2380 4.706962 AGCAAGTCCAAAGAAAACAAGAGT 59.293 37.500 0.00 0.00 0.00 3.24
2297 2381 5.254339 AGCAAGTCCAAAGAAAACAAGAG 57.746 39.130 0.00 0.00 0.00 2.85
2298 2382 5.885912 ACTAGCAAGTCCAAAGAAAACAAGA 59.114 36.000 0.00 0.00 0.00 3.02
2299 2383 6.136541 ACTAGCAAGTCCAAAGAAAACAAG 57.863 37.500 0.00 0.00 0.00 3.16
2300 2384 6.524101 AACTAGCAAGTCCAAAGAAAACAA 57.476 33.333 0.00 0.00 33.75 2.83
2301 2385 6.826741 AGTAACTAGCAAGTCCAAAGAAAACA 59.173 34.615 0.00 0.00 33.75 2.83
2302 2386 7.260558 AGTAACTAGCAAGTCCAAAGAAAAC 57.739 36.000 0.00 0.00 33.75 2.43
2303 2387 8.208903 AGTAGTAACTAGCAAGTCCAAAGAAAA 58.791 33.333 0.00 0.00 33.75 2.29
2304 2388 7.732996 AGTAGTAACTAGCAAGTCCAAAGAAA 58.267 34.615 0.00 0.00 33.75 2.52
2305 2389 7.299246 AGTAGTAACTAGCAAGTCCAAAGAA 57.701 36.000 0.00 0.00 33.75 2.52
2306 2390 6.912951 AGTAGTAACTAGCAAGTCCAAAGA 57.087 37.500 0.00 0.00 33.75 2.52
2307 2391 6.369065 CCAAGTAGTAACTAGCAAGTCCAAAG 59.631 42.308 0.00 0.00 33.75 2.77
2308 2392 6.183361 ACCAAGTAGTAACTAGCAAGTCCAAA 60.183 38.462 0.00 0.00 33.75 3.28
2309 2393 5.306160 ACCAAGTAGTAACTAGCAAGTCCAA 59.694 40.000 0.00 0.00 33.75 3.53
2310 2394 4.836736 ACCAAGTAGTAACTAGCAAGTCCA 59.163 41.667 0.00 0.00 33.75 4.02
2311 2395 5.185442 AGACCAAGTAGTAACTAGCAAGTCC 59.815 44.000 0.00 0.00 33.75 3.85
2312 2396 6.151480 AGAGACCAAGTAGTAACTAGCAAGTC 59.849 42.308 0.00 0.00 33.75 3.01
2313 2397 6.011481 AGAGACCAAGTAGTAACTAGCAAGT 58.989 40.000 0.00 0.00 33.75 3.16
2314 2398 6.376018 AGAGAGACCAAGTAGTAACTAGCAAG 59.624 42.308 0.00 0.00 33.75 4.01
2315 2399 6.246919 AGAGAGACCAAGTAGTAACTAGCAA 58.753 40.000 0.00 0.00 33.75 3.91
2316 2400 5.817784 AGAGAGACCAAGTAGTAACTAGCA 58.182 41.667 0.00 0.00 33.75 3.49
2317 2401 6.762702 AAGAGAGACCAAGTAGTAACTAGC 57.237 41.667 0.00 0.00 33.75 3.42
2320 2404 9.310449 TGAATAAAGAGAGACCAAGTAGTAACT 57.690 33.333 0.00 0.00 37.65 2.24
2327 2411 8.897752 GCAAATATGAATAAAGAGAGACCAAGT 58.102 33.333 0.00 0.00 0.00 3.16
2328 2412 9.118300 AGCAAATATGAATAAAGAGAGACCAAG 57.882 33.333 0.00 0.00 0.00 3.61
2362 2446 8.980481 TCTTTCCTCTTAATTTTGAGACAACT 57.020 30.769 8.42 0.00 32.44 3.16
2363 2447 9.670719 CTTCTTTCCTCTTAATTTTGAGACAAC 57.329 33.333 8.42 0.00 32.44 3.32
2364 2448 8.352942 GCTTCTTTCCTCTTAATTTTGAGACAA 58.647 33.333 8.42 0.00 32.44 3.18
2365 2449 7.502226 TGCTTCTTTCCTCTTAATTTTGAGACA 59.498 33.333 8.42 0.00 32.44 3.41
2366 2450 7.875971 TGCTTCTTTCCTCTTAATTTTGAGAC 58.124 34.615 8.42 0.00 32.44 3.36
2367 2451 8.463930 TTGCTTCTTTCCTCTTAATTTTGAGA 57.536 30.769 8.42 0.00 32.44 3.27
2368 2452 8.972349 GTTTGCTTCTTTCCTCTTAATTTTGAG 58.028 33.333 0.00 0.00 0.00 3.02
2369 2453 7.926018 GGTTTGCTTCTTTCCTCTTAATTTTGA 59.074 33.333 0.00 0.00 0.00 2.69
2370 2454 7.171508 GGGTTTGCTTCTTTCCTCTTAATTTTG 59.828 37.037 0.00 0.00 0.00 2.44
2371 2455 7.217200 GGGTTTGCTTCTTTCCTCTTAATTTT 58.783 34.615 0.00 0.00 0.00 1.82
2372 2456 6.239600 GGGGTTTGCTTCTTTCCTCTTAATTT 60.240 38.462 0.00 0.00 0.00 1.82
2373 2457 5.246203 GGGGTTTGCTTCTTTCCTCTTAATT 59.754 40.000 0.00 0.00 0.00 1.40
2374 2458 4.772624 GGGGTTTGCTTCTTTCCTCTTAAT 59.227 41.667 0.00 0.00 0.00 1.40
2375 2459 4.149598 GGGGTTTGCTTCTTTCCTCTTAA 58.850 43.478 0.00 0.00 0.00 1.85
2376 2460 3.139397 TGGGGTTTGCTTCTTTCCTCTTA 59.861 43.478 0.00 0.00 0.00 2.10
2377 2461 2.091333 TGGGGTTTGCTTCTTTCCTCTT 60.091 45.455 0.00 0.00 0.00 2.85
2378 2462 1.499007 TGGGGTTTGCTTCTTTCCTCT 59.501 47.619 0.00 0.00 0.00 3.69
2379 2463 1.889170 CTGGGGTTTGCTTCTTTCCTC 59.111 52.381 0.00 0.00 0.00 3.71
2380 2464 1.481242 CCTGGGGTTTGCTTCTTTCCT 60.481 52.381 0.00 0.00 0.00 3.36
2381 2465 0.969149 CCTGGGGTTTGCTTCTTTCC 59.031 55.000 0.00 0.00 0.00 3.13
2382 2466 0.318441 GCCTGGGGTTTGCTTCTTTC 59.682 55.000 0.00 0.00 0.00 2.62
2383 2467 1.121407 GGCCTGGGGTTTGCTTCTTT 61.121 55.000 0.00 0.00 0.00 2.52
2384 2468 1.533994 GGCCTGGGGTTTGCTTCTT 60.534 57.895 0.00 0.00 0.00 2.52
2385 2469 2.118294 GGCCTGGGGTTTGCTTCT 59.882 61.111 0.00 0.00 0.00 2.85
2386 2470 1.406860 TTTGGCCTGGGGTTTGCTTC 61.407 55.000 3.32 0.00 0.00 3.86
2387 2471 0.985490 TTTTGGCCTGGGGTTTGCTT 60.985 50.000 3.32 0.00 0.00 3.91
2388 2472 0.985490 TTTTTGGCCTGGGGTTTGCT 60.985 50.000 3.32 0.00 0.00 3.91
2389 2473 1.529309 TTTTTGGCCTGGGGTTTGC 59.471 52.632 3.32 0.00 0.00 3.68
2405 2489 6.016108 CCAAAGAATTCCATGTTGCCATTTTT 60.016 34.615 0.65 0.00 0.00 1.94
2406 2490 5.474189 CCAAAGAATTCCATGTTGCCATTTT 59.526 36.000 0.65 0.00 0.00 1.82
2407 2491 5.005094 CCAAAGAATTCCATGTTGCCATTT 58.995 37.500 0.65 0.00 0.00 2.32
2408 2492 4.581868 CCAAAGAATTCCATGTTGCCATT 58.418 39.130 0.65 0.00 0.00 3.16
2409 2493 3.620472 GCCAAAGAATTCCATGTTGCCAT 60.620 43.478 0.65 0.00 0.00 4.40
2410 2494 2.289569 GCCAAAGAATTCCATGTTGCCA 60.290 45.455 0.65 0.00 0.00 4.92
2411 2495 2.289569 TGCCAAAGAATTCCATGTTGCC 60.290 45.455 0.65 0.00 0.00 4.52
2412 2496 2.738314 GTGCCAAAGAATTCCATGTTGC 59.262 45.455 0.65 2.67 0.00 4.17
2413 2497 4.261578 AGTGCCAAAGAATTCCATGTTG 57.738 40.909 0.65 2.21 0.00 3.33
2414 2498 4.961438 AAGTGCCAAAGAATTCCATGTT 57.039 36.364 0.65 0.00 0.00 2.71
2415 2499 5.539955 AGTTAAGTGCCAAAGAATTCCATGT 59.460 36.000 0.65 0.00 0.00 3.21
2416 2500 6.029346 AGTTAAGTGCCAAAGAATTCCATG 57.971 37.500 0.65 1.42 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.