Multiple sequence alignment - TraesCS3D01G147400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G147400 chr3D 100.000 2615 0 0 1 2615 111955107 111957721 0.000000e+00 4830.0
1 TraesCS3D01G147400 chr3D 86.676 698 76 10 1930 2615 429083616 429082924 0.000000e+00 758.0
2 TraesCS3D01G147400 chr3D 86.305 701 76 13 1930 2615 429089523 429088828 0.000000e+00 745.0
3 TraesCS3D01G147400 chr3D 85.859 693 81 11 1930 2608 611760833 611760144 0.000000e+00 721.0
4 TraesCS3D01G147400 chr3D 83.452 701 87 15 1927 2615 563621928 563622611 2.210000e-175 625.0
5 TraesCS3D01G147400 chr3D 83.894 416 53 9 1039 1441 111963824 111964238 4.080000e-103 385.0
6 TraesCS3D01G147400 chr3B 89.849 1793 96 21 133 1894 162638366 162640103 0.000000e+00 2224.0
7 TraesCS3D01G147400 chr3B 84.639 332 41 5 1039 1360 162688564 162688895 3.250000e-84 322.0
8 TraesCS3D01G147400 chr3A 88.911 983 60 16 835 1788 118546973 118546011 0.000000e+00 1166.0
9 TraesCS3D01G147400 chr3A 90.090 222 19 2 130 348 118547428 118547207 4.260000e-73 285.0
10 TraesCS3D01G147400 chr3A 95.312 64 2 1 58 121 118547526 118547464 1.660000e-17 100.0
11 TraesCS3D01G147400 chr7B 86.099 705 77 12 1927 2614 592397987 592398687 0.000000e+00 739.0
12 TraesCS3D01G147400 chr7B 85.180 695 85 11 1935 2615 562973458 562972768 0.000000e+00 697.0
13 TraesCS3D01G147400 chr5B 86.063 696 78 11 1935 2615 660237773 660237082 0.000000e+00 730.0
14 TraesCS3D01G147400 chr5B 85.899 695 81 10 1935 2615 185210111 185209420 0.000000e+00 725.0
15 TraesCS3D01G147400 chr5D 85.857 700 81 11 1930 2615 330727494 330726799 0.000000e+00 728.0
16 TraesCS3D01G147400 chr7A 85.714 700 83 11 1930 2615 16741692 16740996 0.000000e+00 723.0
17 TraesCS3D01G147400 chr4B 84.527 698 83 14 1932 2615 389535365 389536051 0.000000e+00 667.0
18 TraesCS3D01G147400 chr4B 100.000 38 0 0 1 38 87455723 87455686 1.300000e-08 71.3
19 TraesCS3D01G147400 chr4B 100.000 38 0 0 1 38 162847658 162847695 1.300000e-08 71.3
20 TraesCS3D01G147400 chr4B 100.000 38 0 0 1 38 584449000 584448963 1.300000e-08 71.3
21 TraesCS3D01G147400 chr4B 100.000 38 0 0 1 38 584771603 584771640 1.300000e-08 71.3
22 TraesCS3D01G147400 chr4D 100.000 38 0 0 1 38 5008773 5008736 1.300000e-08 71.3
23 TraesCS3D01G147400 chr4D 100.000 38 0 0 1 38 47566716 47566679 1.300000e-08 71.3
24 TraesCS3D01G147400 chr4D 100.000 38 0 0 1 38 409498373 409498336 1.300000e-08 71.3
25 TraesCS3D01G147400 chr4D 100.000 38 0 0 1 38 478497369 478497406 1.300000e-08 71.3
26 TraesCS3D01G147400 chr6B 97.500 40 0 1 4 43 276014259 276014221 1.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G147400 chr3D 111955107 111957721 2614 False 4830 4830 100.000000 1 2615 1 chr3D.!!$F1 2614
1 TraesCS3D01G147400 chr3D 429082924 429083616 692 True 758 758 86.676000 1930 2615 1 chr3D.!!$R1 685
2 TraesCS3D01G147400 chr3D 429088828 429089523 695 True 745 745 86.305000 1930 2615 1 chr3D.!!$R2 685
3 TraesCS3D01G147400 chr3D 611760144 611760833 689 True 721 721 85.859000 1930 2608 1 chr3D.!!$R3 678
4 TraesCS3D01G147400 chr3D 563621928 563622611 683 False 625 625 83.452000 1927 2615 1 chr3D.!!$F3 688
5 TraesCS3D01G147400 chr3B 162638366 162640103 1737 False 2224 2224 89.849000 133 1894 1 chr3B.!!$F1 1761
6 TraesCS3D01G147400 chr3A 118546011 118547526 1515 True 517 1166 91.437667 58 1788 3 chr3A.!!$R1 1730
7 TraesCS3D01G147400 chr7B 592397987 592398687 700 False 739 739 86.099000 1927 2614 1 chr7B.!!$F1 687
8 TraesCS3D01G147400 chr7B 562972768 562973458 690 True 697 697 85.180000 1935 2615 1 chr7B.!!$R1 680
9 TraesCS3D01G147400 chr5B 660237082 660237773 691 True 730 730 86.063000 1935 2615 1 chr5B.!!$R2 680
10 TraesCS3D01G147400 chr5B 185209420 185210111 691 True 725 725 85.899000 1935 2615 1 chr5B.!!$R1 680
11 TraesCS3D01G147400 chr5D 330726799 330727494 695 True 728 728 85.857000 1930 2615 1 chr5D.!!$R1 685
12 TraesCS3D01G147400 chr7A 16740996 16741692 696 True 723 723 85.714000 1930 2615 1 chr7A.!!$R1 685
13 TraesCS3D01G147400 chr4B 389535365 389536051 686 False 667 667 84.527000 1932 2615 1 chr4B.!!$F2 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 706 0.108329 TTTGGATCGAGAGGAACGGC 60.108 55.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2433 0.040067 GTTTGCTTCGCTTGGACCAG 60.04 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.555896 TGGTAGTATATGAGAAATGGGTGTAA 57.444 34.615 0.00 0.00 0.00 2.41
26 27 8.426489 TGGTAGTATATGAGAAATGGGTGTAAC 58.574 37.037 0.00 0.00 0.00 2.50
27 28 8.648693 GGTAGTATATGAGAAATGGGTGTAACT 58.351 37.037 0.00 0.00 36.74 2.24
30 31 9.209048 AGTATATGAGAAATGGGTGTAACTACA 57.791 33.333 0.00 0.00 36.74 2.74
46 47 8.305046 TGTAACTACACCCGGTATAATAAAGT 57.695 34.615 0.00 0.00 0.00 2.66
47 48 9.415008 TGTAACTACACCCGGTATAATAAAGTA 57.585 33.333 0.00 0.00 0.00 2.24
48 49 9.899226 GTAACTACACCCGGTATAATAAAGTAG 57.101 37.037 0.00 0.00 34.26 2.57
49 50 8.766994 AACTACACCCGGTATAATAAAGTAGA 57.233 34.615 12.17 0.00 32.85 2.59
50 51 8.401490 ACTACACCCGGTATAATAAAGTAGAG 57.599 38.462 12.17 0.00 32.85 2.43
51 52 6.094193 ACACCCGGTATAATAAAGTAGAGC 57.906 41.667 0.00 0.00 0.00 4.09
52 53 5.837438 ACACCCGGTATAATAAAGTAGAGCT 59.163 40.000 0.00 0.00 0.00 4.09
53 54 6.015603 ACACCCGGTATAATAAAGTAGAGCTC 60.016 42.308 5.27 5.27 0.00 4.09
54 55 6.015688 CACCCGGTATAATAAAGTAGAGCTCA 60.016 42.308 17.77 0.00 0.00 4.26
55 56 6.724905 ACCCGGTATAATAAAGTAGAGCTCAT 59.275 38.462 17.77 3.63 0.00 2.90
56 57 7.892241 ACCCGGTATAATAAAGTAGAGCTCATA 59.108 37.037 17.77 2.58 0.00 2.15
87 88 5.570973 TCAACAACAACGACATCAAAAACAG 59.429 36.000 0.00 0.00 0.00 3.16
194 223 3.069729 ACACGAGAATATAGCCCCTTCAC 59.930 47.826 0.00 0.00 0.00 3.18
204 233 2.000048 AGCCCCTTCACCCTTCATTTA 59.000 47.619 0.00 0.00 0.00 1.40
238 267 1.079503 GCTAAGTTCGTGGCTCTTGG 58.920 55.000 0.00 0.00 0.00 3.61
397 457 8.982723 AGTCCAGCTAAAGAACTTCTGATAATA 58.017 33.333 0.00 0.00 0.00 0.98
433 493 2.774439 AGGCAAAACGTTGACATGTC 57.226 45.000 19.27 19.27 46.22 3.06
434 494 1.336755 AGGCAAAACGTTGACATGTCC 59.663 47.619 22.85 7.67 46.22 4.02
452 523 5.022282 TGTCCACGACATCATCACATATT 57.978 39.130 0.00 0.00 37.67 1.28
501 582 7.198390 CCATCTGTATAAATTTCAGTGCCTTG 58.802 38.462 0.00 0.00 0.00 3.61
516 597 5.916883 CAGTGCCTTGTTTAAAAGAGACATG 59.083 40.000 0.00 0.00 0.00 3.21
568 649 0.468226 ATAGCGCTCCCATCCGAAAA 59.532 50.000 16.34 0.00 0.00 2.29
571 652 2.472909 CGCTCCCATCCGAAAAGCC 61.473 63.158 0.00 0.00 0.00 4.35
574 655 1.476833 GCTCCCATCCGAAAAGCCATA 60.477 52.381 0.00 0.00 0.00 2.74
581 662 0.181350 CCGAAAAGCCATAGCCTCCT 59.819 55.000 0.00 0.00 41.25 3.69
584 665 2.098117 CGAAAAGCCATAGCCTCCTTTG 59.902 50.000 0.00 0.00 41.25 2.77
592 673 2.220653 TAGCCTCCTTTGCAATGCTT 57.779 45.000 6.82 0.00 0.00 3.91
594 675 2.743553 AGCCTCCTTTGCAATGCTTAT 58.256 42.857 6.82 0.00 0.00 1.73
597 678 3.788937 CCTCCTTTGCAATGCTTATTGG 58.211 45.455 6.82 2.11 32.43 3.16
600 681 5.395990 CCTCCTTTGCAATGCTTATTGGATT 60.396 40.000 6.82 0.00 37.18 3.01
624 705 2.159099 TCATTTGGATCGAGAGGAACGG 60.159 50.000 0.00 0.00 0.00 4.44
625 706 0.108329 TTTGGATCGAGAGGAACGGC 60.108 55.000 0.00 0.00 0.00 5.68
626 707 1.956629 TTGGATCGAGAGGAACGGCC 61.957 60.000 0.00 0.00 0.00 6.13
627 708 2.026301 GATCGAGAGGAACGGCCG 59.974 66.667 26.86 26.86 43.43 6.13
637 718 3.540367 GAACGGCCGGGGTCTTTCA 62.540 63.158 31.76 0.00 29.96 2.69
639 720 3.053896 CGGCCGGGGTCTTTCAAC 61.054 66.667 20.10 0.00 0.00 3.18
654 735 6.959639 TCTTTCAACAAAAGAGTATGGCTT 57.040 33.333 0.00 0.00 46.64 4.35
658 739 6.899393 TCAACAAAAGAGTATGGCTTCAAT 57.101 33.333 0.00 0.00 0.00 2.57
660 741 8.044060 TCAACAAAAGAGTATGGCTTCAATAG 57.956 34.615 0.00 0.00 0.00 1.73
686 767 4.732285 ACTCAACAACATTAAGCGTGAG 57.268 40.909 0.00 0.00 0.00 3.51
696 777 0.178068 TAAGCGTGAGGCCATCCTTC 59.822 55.000 5.01 0.00 44.46 3.46
724 805 1.253100 GTCGGGGCAAAGAAATTGGA 58.747 50.000 0.00 0.00 39.54 3.53
726 807 2.036604 GTCGGGGCAAAGAAATTGGAAA 59.963 45.455 0.00 0.00 39.54 3.13
727 808 2.298729 TCGGGGCAAAGAAATTGGAAAG 59.701 45.455 0.00 0.00 39.54 2.62
735 816 6.764560 GGCAAAGAAATTGGAAAGCATCATAT 59.235 34.615 0.00 0.00 39.54 1.78
736 817 7.042254 GGCAAAGAAATTGGAAAGCATCATATC 60.042 37.037 0.00 0.00 39.54 1.63
737 818 7.493320 GCAAAGAAATTGGAAAGCATCATATCA 59.507 33.333 0.00 0.00 39.54 2.15
741 822 7.562454 AGAAATTGGAAAGCATCATATCAGGAA 59.438 33.333 0.00 0.00 0.00 3.36
742 823 7.664552 AATTGGAAAGCATCATATCAGGAAA 57.335 32.000 0.00 0.00 0.00 3.13
748 829 7.283127 GGAAAGCATCATATCAGGAAAGTAACA 59.717 37.037 0.00 0.00 0.00 2.41
749 830 8.579850 AAAGCATCATATCAGGAAAGTAACAA 57.420 30.769 0.00 0.00 0.00 2.83
821 902 2.426522 TGAGTCAAATCCTTTGCCTCG 58.573 47.619 6.27 0.00 45.77 4.63
880 963 8.864087 AGTATATCTGAAATAGTGAGCATGACA 58.136 33.333 0.00 0.00 0.00 3.58
881 964 9.138062 GTATATCTGAAATAGTGAGCATGACAG 57.862 37.037 0.00 0.00 0.00 3.51
883 966 3.937079 CTGAAATAGTGAGCATGACAGCA 59.063 43.478 0.00 0.00 36.85 4.41
886 969 5.525012 TGAAATAGTGAGCATGACAGCATAC 59.475 40.000 0.00 0.00 36.85 2.39
887 970 2.322355 AGTGAGCATGACAGCATACC 57.678 50.000 0.00 0.00 36.85 2.73
888 971 1.836166 AGTGAGCATGACAGCATACCT 59.164 47.619 0.00 0.00 36.85 3.08
907 990 4.897051 ACCTACCTAAATGATCTGTCCCT 58.103 43.478 0.00 0.00 0.00 4.20
912 995 3.629398 CCTAAATGATCTGTCCCTGCAAC 59.371 47.826 0.00 0.00 0.00 4.17
961 1046 5.780282 ACCAACCTGTCTGCATATATAGCTA 59.220 40.000 0.00 0.00 0.00 3.32
967 1052 5.414360 TGTCTGCATATATAGCTAAGCTGC 58.586 41.667 0.00 5.81 40.10 5.25
981 1066 1.968540 GCTGCAGCTTCGGTTTCCT 60.969 57.895 31.33 0.00 38.21 3.36
1013 1098 2.505407 CCTCCACCATGTCCTCATACAA 59.495 50.000 0.00 0.00 32.02 2.41
1018 1103 2.301870 ACCATGTCCTCATACAACACGT 59.698 45.455 0.00 0.00 32.02 4.49
1514 1611 1.261619 GATGATGGACGATGAAACGCC 59.738 52.381 0.00 0.00 36.70 5.68
1672 1784 2.073117 TTGCGCGATCTGTTGAAGTA 57.927 45.000 12.10 0.00 0.00 2.24
1673 1785 1.629013 TGCGCGATCTGTTGAAGTAG 58.371 50.000 12.10 0.00 0.00 2.57
1674 1786 0.924090 GCGCGATCTGTTGAAGTAGG 59.076 55.000 12.10 0.00 0.00 3.18
1675 1787 1.736032 GCGCGATCTGTTGAAGTAGGT 60.736 52.381 12.10 0.00 0.00 3.08
1676 1788 2.479049 GCGCGATCTGTTGAAGTAGGTA 60.479 50.000 12.10 0.00 0.00 3.08
1677 1789 3.106672 CGCGATCTGTTGAAGTAGGTAC 58.893 50.000 0.00 0.00 0.00 3.34
1706 1818 3.483574 GCAACAGGTTCGTCATTCGTATG 60.484 47.826 0.00 0.00 40.80 2.39
1773 1885 3.738281 CGGAGTAAACGATCAGGATTGCT 60.738 47.826 0.00 0.00 0.00 3.91
1775 1887 5.542779 GGAGTAAACGATCAGGATTGCTAT 58.457 41.667 0.00 0.00 0.00 2.97
1788 1900 5.619625 GGATTGCTATCCTAACTTGCATC 57.380 43.478 18.62 0.00 45.88 3.91
1790 1902 3.111853 TGCTATCCTAACTTGCATCCG 57.888 47.619 0.00 0.00 0.00 4.18
1822 1934 9.128107 CGTTCATTTTATTTTGCTCTGTGTTAT 57.872 29.630 0.00 0.00 0.00 1.89
1845 1957 4.481930 TGGCTTCACAAATGACTAAACG 57.518 40.909 0.00 0.00 33.38 3.60
1894 2006 2.099405 CGGGCCCAAACTGTATTTCAT 58.901 47.619 24.92 0.00 0.00 2.57
1895 2007 2.099098 CGGGCCCAAACTGTATTTCATC 59.901 50.000 24.92 0.00 0.00 2.92
1896 2008 3.096092 GGGCCCAAACTGTATTTCATCA 58.904 45.455 19.95 0.00 0.00 3.07
1897 2009 3.706086 GGGCCCAAACTGTATTTCATCAT 59.294 43.478 19.95 0.00 0.00 2.45
1898 2010 4.202151 GGGCCCAAACTGTATTTCATCATC 60.202 45.833 19.95 0.00 0.00 2.92
1899 2011 4.402155 GGCCCAAACTGTATTTCATCATCA 59.598 41.667 0.00 0.00 0.00 3.07
1900 2012 5.105392 GGCCCAAACTGTATTTCATCATCAA 60.105 40.000 0.00 0.00 0.00 2.57
1901 2013 6.397272 GCCCAAACTGTATTTCATCATCAAA 58.603 36.000 0.00 0.00 0.00 2.69
1902 2014 6.873076 GCCCAAACTGTATTTCATCATCAAAA 59.127 34.615 0.00 0.00 0.00 2.44
1903 2015 7.387397 GCCCAAACTGTATTTCATCATCAAAAA 59.613 33.333 0.00 0.00 0.00 1.94
1904 2016 9.439500 CCCAAACTGTATTTCATCATCAAAAAT 57.561 29.630 0.00 0.00 0.00 1.82
1909 2021 9.793252 ACTGTATTTCATCATCAAAAATAGTGC 57.207 29.630 0.00 0.00 0.00 4.40
1913 2025 8.922058 ATTTCATCATCAAAAATAGTGCTCAC 57.078 30.769 0.00 0.00 0.00 3.51
1914 2026 6.441093 TCATCATCAAAAATAGTGCTCACC 57.559 37.500 0.00 0.00 0.00 4.02
1915 2027 5.945191 TCATCATCAAAAATAGTGCTCACCA 59.055 36.000 0.00 0.00 0.00 4.17
1916 2028 5.627499 TCATCAAAAATAGTGCTCACCAC 57.373 39.130 0.00 0.00 45.01 4.16
1925 2037 1.630148 GTGCTCACCACTACGATCAC 58.370 55.000 0.00 0.00 41.35 3.06
1928 2040 1.067142 GCTCACCACTACGATCACCAA 60.067 52.381 0.00 0.00 0.00 3.67
1948 2060 7.228507 TCACCAACCCGATAATAATGAAGATTG 59.771 37.037 0.00 0.00 0.00 2.67
1998 2112 3.430374 CGACCCCGAACTGTATTTCATCT 60.430 47.826 0.00 0.00 38.22 2.90
2007 2121 8.285394 CCGAACTGTATTTCATCTTCCATATTG 58.715 37.037 0.00 0.00 0.00 1.90
2025 2139 4.601406 ATTGGGCACTGGAATACCTTTA 57.399 40.909 0.00 0.00 37.04 1.85
2039 2153 8.686334 TGGAATACCTTTAGAATTGCAGAATTC 58.314 33.333 0.00 0.00 41.09 2.17
2051 2165 4.842531 TGCAGAATTCTTGGACCTCATA 57.157 40.909 4.86 0.00 0.00 2.15
2101 2217 1.728425 GTAGCCAACCGGAGTTTAACG 59.272 52.381 9.46 0.00 32.45 3.18
2118 2234 9.490663 GAGTTTAACGTCATGAATTAATTCCAG 57.509 33.333 22.42 15.53 35.97 3.86
2137 2253 3.306919 CCAGGGCAAGCACAATATTTGTT 60.307 43.478 0.00 0.00 43.23 2.83
2141 2257 4.563374 GGGCAAGCACAATATTTGTTTCCT 60.563 41.667 0.00 0.00 43.23 3.36
2152 2268 7.442062 ACAATATTTGTTTCCTTTCTTTGCAGG 59.558 33.333 0.00 0.00 42.22 4.85
2161 2277 3.381272 CCTTTCTTTGCAGGAGTTGTGAA 59.619 43.478 0.00 0.00 30.81 3.18
2174 2290 4.741676 GGAGTTGTGAAAGCTCATTTGTTG 59.258 41.667 0.00 0.00 33.05 3.33
2175 2291 4.685924 AGTTGTGAAAGCTCATTTGTTGG 58.314 39.130 0.00 0.00 33.05 3.77
2196 2312 6.909550 TGGACCAAACAACTTTAGCATAAT 57.090 33.333 0.00 0.00 0.00 1.28
2197 2313 8.301002 GTTGGACCAAACAACTTTAGCATAATA 58.699 33.333 8.94 0.00 43.59 0.98
2198 2314 8.410673 TGGACCAAACAACTTTAGCATAATAA 57.589 30.769 0.00 0.00 0.00 1.40
2199 2315 8.519526 TGGACCAAACAACTTTAGCATAATAAG 58.480 33.333 0.00 0.00 0.00 1.73
2222 2338 4.500117 GCTTCAAAACAAAAGCAAATTGGC 59.500 37.500 0.00 0.00 45.67 4.52
2233 2349 1.738030 GCAAATTGGCAGCACTCCATC 60.738 52.381 0.00 0.00 32.92 3.51
2242 2358 3.950395 GGCAGCACTCCATCTTTTCTATT 59.050 43.478 0.00 0.00 0.00 1.73
2243 2359 4.201990 GGCAGCACTCCATCTTTTCTATTG 60.202 45.833 0.00 0.00 0.00 1.90
2248 2364 5.649831 GCACTCCATCTTTTCTATTGAACCT 59.350 40.000 0.00 0.00 31.02 3.50
2272 2388 0.107456 CATGCCTCAGATTACGCCCT 59.893 55.000 0.00 0.00 0.00 5.19
2284 2400 1.904287 TACGCCCTTTTGCATCAACT 58.096 45.000 0.00 0.00 0.00 3.16
2317 2433 7.939588 AGAACTTTTATTAGATAGGCCCACATC 59.060 37.037 0.00 0.00 0.00 3.06
2351 2467 5.597813 AAGCAAACTTCTATGACGTGAAG 57.402 39.130 10.80 10.80 43.63 3.02
2352 2468 4.883083 AGCAAACTTCTATGACGTGAAGA 58.117 39.130 17.40 4.04 41.38 2.87
2368 2484 4.484912 GTGAAGACCATCTAGTATCCCCT 58.515 47.826 0.00 0.00 0.00 4.79
2369 2485 4.902448 GTGAAGACCATCTAGTATCCCCTT 59.098 45.833 0.00 0.00 0.00 3.95
2405 2521 2.555757 GTCTGTTGATGCAAGCCTCTTT 59.444 45.455 0.00 0.00 0.00 2.52
2411 2527 5.163468 TGTTGATGCAAGCCTCTTTTTGTAA 60.163 36.000 0.00 0.00 0.00 2.41
2416 2532 8.313292 TGATGCAAGCCTCTTTTTGTAAATATT 58.687 29.630 0.00 0.00 0.00 1.28
2423 2539 7.234577 AGCCTCTTTTTGTAAATATTTCACCCA 59.765 33.333 3.39 0.00 0.00 4.51
2445 2561 5.420104 CCATCTCAAGCCTTTCCAAAGTATT 59.580 40.000 0.00 0.00 34.20 1.89
2446 2562 6.071165 CCATCTCAAGCCTTTCCAAAGTATTT 60.071 38.462 0.00 0.00 40.26 1.40
2447 2563 6.575162 TCTCAAGCCTTTCCAAAGTATTTC 57.425 37.500 0.00 0.00 35.03 2.17
2453 2569 5.833131 AGCCTTTCCAAAGTATTTCTGTGAA 59.167 36.000 0.00 0.00 35.03 3.18
2454 2570 6.494835 AGCCTTTCCAAAGTATTTCTGTGAAT 59.505 34.615 0.00 0.00 35.03 2.57
2456 2572 7.116805 GCCTTTCCAAAGTATTTCTGTGAATTG 59.883 37.037 0.00 0.00 35.03 2.32
2457 2573 8.143835 CCTTTCCAAAGTATTTCTGTGAATTGT 58.856 33.333 0.00 0.00 35.03 2.71
2458 2574 8.870160 TTTCCAAAGTATTTCTGTGAATTGTG 57.130 30.769 0.00 0.00 35.03 3.33
2460 2576 7.424803 TCCAAAGTATTTCTGTGAATTGTGTG 58.575 34.615 0.00 0.00 35.03 3.82
2462 2578 7.706179 CCAAAGTATTTCTGTGAATTGTGTGTT 59.294 33.333 0.00 0.00 35.03 3.32
2463 2579 9.086336 CAAAGTATTTCTGTGAATTGTGTGTTT 57.914 29.630 0.00 0.00 35.03 2.83
2492 2613 5.618056 TCTTCTTGCAAGATGAACATGTC 57.382 39.130 31.79 0.00 36.59 3.06
2508 2629 1.588674 TGTCGTGGTCACAATCAACC 58.411 50.000 1.90 0.00 36.03 3.77
2551 2679 9.790344 AATATATGAGCAAGAAGAACTAGCAAT 57.210 29.630 0.00 0.00 0.00 3.56
2554 2682 6.042638 TGAGCAAGAAGAACTAGCAATAGT 57.957 37.500 0.00 0.00 0.00 2.12
2563 2691 6.054860 AGAACTAGCAATAGTGACCACAAT 57.945 37.500 0.00 0.00 0.00 2.71
2567 2695 6.418101 ACTAGCAATAGTGACCACAATCAAT 58.582 36.000 0.00 0.00 0.00 2.57
2596 2724 0.387622 CAGGCAAAGCAATGGACGTG 60.388 55.000 0.00 0.00 0.00 4.49
2608 2736 0.684535 TGGACGTGGAAAGCATGAGA 59.315 50.000 0.00 0.00 0.00 3.27
2609 2737 1.278985 TGGACGTGGAAAGCATGAGAT 59.721 47.619 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.426489 GTTACACCCATTTCTCATATACTACCA 58.574 37.037 0.00 0.00 0.00 3.25
1 2 8.648693 AGTTACACCCATTTCTCATATACTACC 58.351 37.037 0.00 0.00 0.00 3.18
4 5 9.209048 TGTAGTTACACCCATTTCTCATATACT 57.791 33.333 0.00 0.00 0.00 2.12
21 22 8.305046 ACTTTATTATACCGGGTGTAGTTACA 57.695 34.615 10.66 0.00 31.61 2.41
22 23 9.899226 CTACTTTATTATACCGGGTGTAGTTAC 57.101 37.037 10.66 0.00 31.61 2.50
23 24 9.860650 TCTACTTTATTATACCGGGTGTAGTTA 57.139 33.333 10.66 1.13 31.61 2.24
24 25 8.766994 TCTACTTTATTATACCGGGTGTAGTT 57.233 34.615 10.66 2.09 31.61 2.24
25 26 7.040132 GCTCTACTTTATTATACCGGGTGTAGT 60.040 40.741 10.66 7.07 31.61 2.73
26 27 7.176340 AGCTCTACTTTATTATACCGGGTGTAG 59.824 40.741 10.66 9.97 31.61 2.74
27 28 7.006509 AGCTCTACTTTATTATACCGGGTGTA 58.993 38.462 10.66 4.43 0.00 2.90
28 29 5.837438 AGCTCTACTTTATTATACCGGGTGT 59.163 40.000 10.66 5.66 0.00 4.16
29 30 6.015688 TGAGCTCTACTTTATTATACCGGGTG 60.016 42.308 16.19 0.00 0.00 4.61
30 31 6.073314 TGAGCTCTACTTTATTATACCGGGT 58.927 40.000 16.19 4.46 0.00 5.28
31 32 6.585695 TGAGCTCTACTTTATTATACCGGG 57.414 41.667 16.19 0.00 0.00 5.73
65 66 4.862018 CCTGTTTTTGATGTCGTTGTTGTT 59.138 37.500 0.00 0.00 0.00 2.83
79 80 4.267452 CACGAATGGTCAAACCTGTTTTTG 59.733 41.667 0.00 0.00 39.58 2.44
87 88 0.240945 CCTGCACGAATGGTCAAACC 59.759 55.000 0.00 0.00 39.22 3.27
194 223 9.788960 GCTTTACTACATTTTCTAAATGAAGGG 57.211 33.333 16.58 7.55 35.89 3.95
204 233 8.709646 CACGAACTTAGCTTTACTACATTTTCT 58.290 33.333 0.00 0.00 0.00 2.52
273 305 8.611051 AGTTGACCTACCAGATAGAGTAAAAT 57.389 34.615 0.00 0.00 31.83 1.82
283 315 8.783660 TTGATAATAGAGTTGACCTACCAGAT 57.216 34.615 0.00 0.00 0.00 2.90
369 429 3.999663 CAGAAGTTCTTTAGCTGGACTGG 59.000 47.826 1.56 0.00 0.00 4.00
397 457 9.871238 CGTTTTGCCTAGTATATATTCCACTAT 57.129 33.333 0.00 0.00 0.00 2.12
414 474 1.336755 GGACATGTCAACGTTTTGCCT 59.663 47.619 26.47 0.00 32.17 4.75
433 493 8.171196 GCTTATTAATATGTGATGATGTCGTGG 58.829 37.037 9.42 0.00 0.00 4.94
434 494 8.171196 GGCTTATTAATATGTGATGATGTCGTG 58.829 37.037 9.42 0.00 0.00 4.35
437 508 8.180267 GCTGGCTTATTAATATGTGATGATGTC 58.820 37.037 9.42 0.00 0.00 3.06
501 582 3.884169 TGCACGCATGTCTCTTTTAAAC 58.116 40.909 0.00 0.00 0.00 2.01
516 597 7.300320 TCAGATGAAAATTATATCATGCACGC 58.700 34.615 6.15 0.00 36.45 5.34
527 608 9.909644 GCTATTGCTTGATCAGATGAAAATTAT 57.090 29.630 0.00 0.00 36.03 1.28
547 628 0.249868 TTCGGATGGGAGCGCTATTG 60.250 55.000 11.50 0.00 0.00 1.90
548 629 0.468226 TTTCGGATGGGAGCGCTATT 59.532 50.000 11.50 0.00 0.00 1.73
549 630 0.468226 TTTTCGGATGGGAGCGCTAT 59.532 50.000 11.50 0.00 0.00 2.97
559 640 1.876156 GAGGCTATGGCTTTTCGGATG 59.124 52.381 0.00 0.00 38.98 3.51
568 649 0.332632 TTGCAAAGGAGGCTATGGCT 59.667 50.000 0.00 0.00 42.48 4.75
571 652 2.029623 AGCATTGCAAAGGAGGCTATG 58.970 47.619 11.91 0.00 43.95 2.23
574 655 2.220653 TAAGCATTGCAAAGGAGGCT 57.779 45.000 11.91 5.17 0.00 4.58
581 662 6.641474 TGATCAATCCAATAAGCATTGCAAA 58.359 32.000 11.91 0.00 40.28 3.68
584 665 7.307751 CCAAATGATCAATCCAATAAGCATTGC 60.308 37.037 0.00 0.00 40.28 3.56
602 683 3.493350 CCGTTCCTCTCGATCCAAATGAT 60.493 47.826 0.00 0.00 36.01 2.45
603 684 2.159099 CCGTTCCTCTCGATCCAAATGA 60.159 50.000 0.00 0.00 0.00 2.57
610 691 2.026301 CGGCCGTTCCTCTCGATC 59.974 66.667 19.50 0.00 0.00 3.69
624 705 0.747852 TTTTGTTGAAAGACCCCGGC 59.252 50.000 0.00 0.00 0.00 6.13
625 706 2.293399 CTCTTTTGTTGAAAGACCCCGG 59.707 50.000 0.00 0.00 46.69 5.73
626 707 2.949644 ACTCTTTTGTTGAAAGACCCCG 59.050 45.455 0.00 0.00 46.69 5.73
627 708 5.048013 CCATACTCTTTTGTTGAAAGACCCC 60.048 44.000 0.00 0.00 46.69 4.95
637 718 9.686683 ATACTATTGAAGCCATACTCTTTTGTT 57.313 29.630 0.00 0.00 0.00 2.83
658 739 8.865978 CACGCTTAATGTTGTTGAGTAATACTA 58.134 33.333 0.00 0.00 0.00 1.82
660 741 7.735500 TCACGCTTAATGTTGTTGAGTAATAC 58.264 34.615 0.00 0.00 0.00 1.89
677 758 0.178068 GAAGGATGGCCTCACGCTTA 59.822 55.000 3.32 0.00 46.28 3.09
724 805 8.579850 TTGTTACTTTCCTGATATGATGCTTT 57.420 30.769 0.00 0.00 0.00 3.51
726 807 8.757982 AATTGTTACTTTCCTGATATGATGCT 57.242 30.769 0.00 0.00 0.00 3.79
727 808 9.807649 AAAATTGTTACTTTCCTGATATGATGC 57.192 29.630 0.00 0.00 0.00 3.91
848 931 9.015367 GCTCACTATTTCAGATATACTAGTCCA 57.985 37.037 0.00 0.00 0.00 4.02
871 954 2.366916 AGGTAGGTATGCTGTCATGCTC 59.633 50.000 0.00 0.00 35.89 4.26
872 955 2.402564 AGGTAGGTATGCTGTCATGCT 58.597 47.619 0.00 0.00 35.89 3.79
877 960 6.870965 CAGATCATTTAGGTAGGTATGCTGTC 59.129 42.308 0.00 0.00 0.00 3.51
878 961 6.327626 ACAGATCATTTAGGTAGGTATGCTGT 59.672 38.462 0.00 0.00 0.00 4.40
879 962 6.763355 ACAGATCATTTAGGTAGGTATGCTG 58.237 40.000 0.00 0.00 0.00 4.41
880 963 6.014156 GGACAGATCATTTAGGTAGGTATGCT 60.014 42.308 0.00 0.00 0.00 3.79
881 964 6.166982 GGACAGATCATTTAGGTAGGTATGC 58.833 44.000 0.00 0.00 0.00 3.14
883 966 6.498651 CAGGGACAGATCATTTAGGTAGGTAT 59.501 42.308 0.00 0.00 0.00 2.73
886 969 4.503991 GCAGGGACAGATCATTTAGGTAGG 60.504 50.000 0.00 0.00 0.00 3.18
887 970 4.101585 TGCAGGGACAGATCATTTAGGTAG 59.898 45.833 0.00 0.00 0.00 3.18
888 971 4.037222 TGCAGGGACAGATCATTTAGGTA 58.963 43.478 0.00 0.00 0.00 3.08
967 1052 1.468914 GGCTTTAGGAAACCGAAGCTG 59.531 52.381 21.23 4.89 42.63 4.24
981 1066 3.245586 ACATGGTGGAGGAAATGGCTTTA 60.246 43.478 0.00 0.00 0.00 1.85
1013 1098 2.660552 CGGGCTGAAACGACGTGT 60.661 61.111 0.00 0.00 0.00 4.49
1018 1103 2.646175 CCTCTCCGGGCTGAAACGA 61.646 63.158 0.00 0.00 0.00 3.85
1454 1551 3.423162 GATGCCGCAGCTCTCTCGT 62.423 63.158 0.16 0.00 40.80 4.18
1639 1751 3.081804 TCGCGCAATCATATCTAGGAGA 58.918 45.455 8.75 0.00 0.00 3.71
1672 1784 3.469750 ACCTGTTGCTACCTAGTACCT 57.530 47.619 0.00 0.00 0.00 3.08
1673 1785 3.428589 CGAACCTGTTGCTACCTAGTACC 60.429 52.174 0.00 0.00 0.00 3.34
1674 1786 3.192212 ACGAACCTGTTGCTACCTAGTAC 59.808 47.826 0.00 0.00 0.00 2.73
1675 1787 3.424703 ACGAACCTGTTGCTACCTAGTA 58.575 45.455 0.00 0.00 0.00 1.82
1676 1788 2.230750 GACGAACCTGTTGCTACCTAGT 59.769 50.000 0.00 0.00 0.00 2.57
1677 1789 2.230508 TGACGAACCTGTTGCTACCTAG 59.769 50.000 0.00 0.00 0.00 3.02
1788 1900 5.665217 GCAAAATAAAATGAACGAAGTGCGG 60.665 40.000 0.00 0.00 45.00 5.69
1790 1902 6.363357 AGAGCAAAATAAAATGAACGAAGTGC 59.637 34.615 0.00 0.00 45.00 4.40
1796 1908 6.991485 ACACAGAGCAAAATAAAATGAACG 57.009 33.333 0.00 0.00 0.00 3.95
1822 1934 5.066634 TCGTTTAGTCATTTGTGAAGCCAAA 59.933 36.000 0.00 0.00 38.58 3.28
1825 1937 4.213482 ACTCGTTTAGTCATTTGTGAAGCC 59.787 41.667 0.00 0.00 30.33 4.35
1860 1972 2.943978 GCCCGTACTGGTGAGCACT 61.944 63.158 5.14 0.00 35.15 4.40
1861 1973 2.434359 GCCCGTACTGGTGAGCAC 60.434 66.667 5.14 0.00 35.15 4.40
1871 1983 2.118313 AATACAGTTTGGGCCCGTAC 57.882 50.000 19.37 17.61 0.00 3.67
1873 1985 1.202952 TGAAATACAGTTTGGGCCCGT 60.203 47.619 19.37 11.19 0.00 5.28
1894 2006 5.316167 AGTGGTGAGCACTATTTTTGATGA 58.684 37.500 16.55 0.00 0.00 2.92
1895 2007 5.633830 AGTGGTGAGCACTATTTTTGATG 57.366 39.130 16.55 0.00 0.00 3.07
1896 2008 5.351465 CGTAGTGGTGAGCACTATTTTTGAT 59.649 40.000 24.96 0.47 37.46 2.57
1897 2009 4.688879 CGTAGTGGTGAGCACTATTTTTGA 59.311 41.667 24.96 2.49 37.46 2.69
1898 2010 4.688879 TCGTAGTGGTGAGCACTATTTTTG 59.311 41.667 24.96 13.73 37.46 2.44
1899 2011 4.890088 TCGTAGTGGTGAGCACTATTTTT 58.110 39.130 24.96 2.63 37.46 1.94
1900 2012 4.530710 TCGTAGTGGTGAGCACTATTTT 57.469 40.909 24.96 3.35 37.46 1.82
1901 2013 4.159693 TGATCGTAGTGGTGAGCACTATTT 59.840 41.667 24.96 13.96 37.46 1.40
1902 2014 3.699538 TGATCGTAGTGGTGAGCACTATT 59.300 43.478 24.96 14.28 37.46 1.73
1903 2015 3.066900 GTGATCGTAGTGGTGAGCACTAT 59.933 47.826 24.96 12.41 45.42 2.12
1904 2016 2.422479 GTGATCGTAGTGGTGAGCACTA 59.578 50.000 19.45 19.45 45.42 2.74
1905 2017 1.202582 GTGATCGTAGTGGTGAGCACT 59.797 52.381 21.66 21.66 45.42 4.40
1906 2018 1.630148 GTGATCGTAGTGGTGAGCAC 58.370 55.000 6.68 6.68 43.22 4.40
1907 2019 0.530744 GGTGATCGTAGTGGTGAGCA 59.469 55.000 0.00 0.00 0.00 4.26
1908 2020 0.530744 TGGTGATCGTAGTGGTGAGC 59.469 55.000 0.00 0.00 0.00 4.26
1909 2021 2.607187 GTTGGTGATCGTAGTGGTGAG 58.393 52.381 0.00 0.00 0.00 3.51
1910 2022 1.274167 GGTTGGTGATCGTAGTGGTGA 59.726 52.381 0.00 0.00 0.00 4.02
1911 2023 1.674817 GGGTTGGTGATCGTAGTGGTG 60.675 57.143 0.00 0.00 0.00 4.17
1912 2024 0.611714 GGGTTGGTGATCGTAGTGGT 59.388 55.000 0.00 0.00 0.00 4.16
1913 2025 0.459585 CGGGTTGGTGATCGTAGTGG 60.460 60.000 0.00 0.00 0.00 4.00
1914 2026 0.528924 TCGGGTTGGTGATCGTAGTG 59.471 55.000 0.00 0.00 0.00 2.74
1915 2027 1.481871 ATCGGGTTGGTGATCGTAGT 58.518 50.000 0.00 0.00 0.00 2.73
1916 2028 3.720949 TTATCGGGTTGGTGATCGTAG 57.279 47.619 0.00 0.00 0.00 3.51
1917 2029 5.787953 TTATTATCGGGTTGGTGATCGTA 57.212 39.130 0.00 0.00 0.00 3.43
1918 2030 4.675976 TTATTATCGGGTTGGTGATCGT 57.324 40.909 0.00 0.00 0.00 3.73
1919 2031 5.234752 TCATTATTATCGGGTTGGTGATCG 58.765 41.667 0.00 0.00 0.00 3.69
1920 2032 6.934645 TCTTCATTATTATCGGGTTGGTGATC 59.065 38.462 0.00 0.00 0.00 2.92
1921 2033 6.837312 TCTTCATTATTATCGGGTTGGTGAT 58.163 36.000 0.00 0.00 0.00 3.06
1922 2034 6.241882 TCTTCATTATTATCGGGTTGGTGA 57.758 37.500 0.00 0.00 0.00 4.02
1923 2035 7.362662 CAATCTTCATTATTATCGGGTTGGTG 58.637 38.462 0.00 0.00 0.00 4.17
1924 2036 6.490040 CCAATCTTCATTATTATCGGGTTGGT 59.510 38.462 0.00 0.00 0.00 3.67
1925 2037 6.490040 ACCAATCTTCATTATTATCGGGTTGG 59.510 38.462 0.00 0.00 37.73 3.77
1928 2040 6.837312 TCACCAATCTTCATTATTATCGGGT 58.163 36.000 0.00 0.00 0.00 5.28
1948 2060 2.894765 GCTAGAGGGAAGGACTATCACC 59.105 54.545 0.00 0.00 0.00 4.02
1981 2094 7.969536 ATATGGAAGATGAAATACAGTTCGG 57.030 36.000 0.00 0.00 0.00 4.30
2007 2121 3.926058 TCTAAAGGTATTCCAGTGCCC 57.074 47.619 0.00 0.00 35.89 5.36
2057 2171 1.414550 GAGAGATAGTGGTTGGGAGCC 59.585 57.143 0.00 0.00 0.00 4.70
2058 2172 2.111384 TGAGAGATAGTGGTTGGGAGC 58.889 52.381 0.00 0.00 0.00 4.70
2101 2217 5.594926 CTTGCCCTGGAATTAATTCATGAC 58.405 41.667 25.55 11.62 38.53 3.06
2118 2234 3.684305 GGAAACAAATATTGTGCTTGCCC 59.316 43.478 0.00 0.00 44.59 5.36
2137 2253 3.381272 CACAACTCCTGCAAAGAAAGGAA 59.619 43.478 2.91 0.00 42.03 3.36
2141 2257 4.677779 GCTTTCACAACTCCTGCAAAGAAA 60.678 41.667 2.91 0.00 33.07 2.52
2152 2268 4.741676 CCAACAAATGAGCTTTCACAACTC 59.258 41.667 0.00 0.00 0.00 3.01
2161 2277 3.450457 TGTTTGGTCCAACAAATGAGCTT 59.550 39.130 2.98 0.00 41.80 3.74
2174 2290 7.488150 GCTTATTATGCTAAAGTTGTTTGGTCC 59.512 37.037 0.00 0.00 0.00 4.46
2175 2291 8.244113 AGCTTATTATGCTAAAGTTGTTTGGTC 58.756 33.333 2.43 0.00 39.21 4.02
2196 2312 7.470900 CCAATTTGCTTTTGTTTTGAAGCTTA 58.529 30.769 0.00 0.00 46.39 3.09
2197 2313 6.324042 CCAATTTGCTTTTGTTTTGAAGCTT 58.676 32.000 0.00 0.00 46.39 3.74
2198 2314 5.676837 GCCAATTTGCTTTTGTTTTGAAGCT 60.677 36.000 9.19 0.00 46.39 3.74
2199 2315 4.500117 GCCAATTTGCTTTTGTTTTGAAGC 59.500 37.500 1.38 1.38 46.42 3.86
2209 2325 2.486918 GAGTGCTGCCAATTTGCTTTT 58.513 42.857 2.90 0.00 0.00 2.27
2211 2327 0.319405 GGAGTGCTGCCAATTTGCTT 59.681 50.000 2.90 0.00 0.00 3.91
2220 2336 1.831580 AGAAAAGATGGAGTGCTGCC 58.168 50.000 0.00 0.00 0.00 4.85
2222 2338 6.404074 GGTTCAATAGAAAAGATGGAGTGCTG 60.404 42.308 0.00 0.00 35.08 4.41
2233 2349 4.771590 TGCTGCAGGTTCAATAGAAAAG 57.228 40.909 17.12 0.00 35.08 2.27
2257 2373 1.401905 GCAAAAGGGCGTAATCTGAGG 59.598 52.381 0.00 0.00 0.00 3.86
2261 2377 2.722094 TGATGCAAAAGGGCGTAATCT 58.278 42.857 0.00 0.00 36.28 2.40
2272 2388 5.067674 AGTTCTTAGCACAGTTGATGCAAAA 59.932 36.000 0.00 0.00 45.92 2.44
2284 2400 9.326413 GCCTATCTAATAAAAGTTCTTAGCACA 57.674 33.333 0.00 0.00 0.00 4.57
2317 2433 0.040067 GTTTGCTTCGCTTGGACCAG 60.040 55.000 0.00 0.00 0.00 4.00
2336 2452 5.255710 AGATGGTCTTCACGTCATAGAAG 57.744 43.478 6.96 6.96 41.95 2.85
2339 2455 5.759506 ACTAGATGGTCTTCACGTCATAG 57.240 43.478 0.00 0.00 0.00 2.23
2345 2461 3.256136 GGGGATACTAGATGGTCTTCACG 59.744 52.174 0.00 0.00 0.00 4.35
2351 2467 4.484912 AGACAAGGGGATACTAGATGGTC 58.515 47.826 0.00 0.00 0.00 4.02
2352 2468 4.561254 AGACAAGGGGATACTAGATGGT 57.439 45.455 0.00 0.00 0.00 3.55
2394 2510 8.435430 GTGAAATATTTACAAAAAGAGGCTTGC 58.565 33.333 0.00 0.00 0.00 4.01
2405 2521 8.250332 GCTTGAGATGGGTGAAATATTTACAAA 58.750 33.333 0.00 0.00 0.00 2.83
2411 2527 5.134725 AGGCTTGAGATGGGTGAAATATT 57.865 39.130 0.00 0.00 0.00 1.28
2416 2532 2.555227 GGAAAGGCTTGAGATGGGTGAA 60.555 50.000 0.00 0.00 0.00 3.18
2423 2539 6.950619 AGAAATACTTTGGAAAGGCTTGAGAT 59.049 34.615 0.00 0.00 40.31 2.75
2445 2561 5.417266 TGGAAGAAACACACAATTCACAGAA 59.583 36.000 0.00 0.00 0.00 3.02
2446 2562 4.946772 TGGAAGAAACACACAATTCACAGA 59.053 37.500 0.00 0.00 0.00 3.41
2447 2563 5.247507 TGGAAGAAACACACAATTCACAG 57.752 39.130 0.00 0.00 0.00 3.66
2453 2569 6.736794 GCAAGAAGATGGAAGAAACACACAAT 60.737 38.462 0.00 0.00 0.00 2.71
2454 2570 5.450412 GCAAGAAGATGGAAGAAACACACAA 60.450 40.000 0.00 0.00 0.00 3.33
2456 2572 4.036734 TGCAAGAAGATGGAAGAAACACAC 59.963 41.667 0.00 0.00 0.00 3.82
2457 2573 4.206375 TGCAAGAAGATGGAAGAAACACA 58.794 39.130 0.00 0.00 0.00 3.72
2458 2574 4.836125 TGCAAGAAGATGGAAGAAACAC 57.164 40.909 0.00 0.00 0.00 3.32
2487 2608 2.095768 GGTTGATTGTGACCACGACATG 60.096 50.000 0.00 0.00 35.95 3.21
2488 2609 2.151202 GGTTGATTGTGACCACGACAT 58.849 47.619 0.00 0.00 35.95 3.06
2563 2691 3.394674 TTGCCTGTCGTCTACAATTGA 57.605 42.857 13.59 0.00 37.74 2.57
2567 2695 1.202592 TGCTTTGCCTGTCGTCTACAA 60.203 47.619 0.00 0.00 37.74 2.41
2572 2700 0.109597 CCATTGCTTTGCCTGTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
2573 2701 0.537143 TCCATTGCTTTGCCTGTCGT 60.537 50.000 0.00 0.00 0.00 4.34
2575 2703 0.109597 CGTCCATTGCTTTGCCTGTC 60.110 55.000 0.00 0.00 0.00 3.51
2577 2705 0.387622 CACGTCCATTGCTTTGCCTG 60.388 55.000 0.00 0.00 0.00 4.85
2578 2706 1.526575 CCACGTCCATTGCTTTGCCT 61.527 55.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.