Multiple sequence alignment - TraesCS3D01G147300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G147300 chr3D 100.000 3134 0 0 1 3134 111929714 111932847 0.000000e+00 5788
1 TraesCS3D01G147300 chr3D 93.516 2853 133 22 333 3134 54377675 54374824 0.000000e+00 4196
2 TraesCS3D01G147300 chr7D 94.724 2843 109 6 333 3134 252055517 252058359 0.000000e+00 4381
3 TraesCS3D01G147300 chr1D 94.639 2854 96 20 333 3134 342177474 342180322 0.000000e+00 4370
4 TraesCS3D01G147300 chr6D 94.540 2839 114 8 334 3134 315966505 315963670 0.000000e+00 4346
5 TraesCS3D01G147300 chr6D 95.046 2523 105 9 625 3134 62818179 62815664 0.000000e+00 3949
6 TraesCS3D01G147300 chr6D 90.097 929 55 12 333 1231 315961045 315960124 0.000000e+00 1171
7 TraesCS3D01G147300 chr4A 93.956 2846 128 17 333 3134 72909852 72912697 0.000000e+00 4263
8 TraesCS3D01G147300 chr4A 89.968 947 47 16 333 1231 72915330 72916276 0.000000e+00 1179
9 TraesCS3D01G147300 chr2A 93.923 2847 121 20 334 3134 612877298 612880138 0.000000e+00 4252
10 TraesCS3D01G147300 chr2A 93.752 2849 125 21 334 3130 591656737 591653890 0.000000e+00 4226
11 TraesCS3D01G147300 chr1A 93.781 2846 120 19 333 3134 430212968 430215800 0.000000e+00 4222
12 TraesCS3D01G147300 chr1A 89.438 1458 101 15 334 1755 323624315 323625755 0.000000e+00 1790
13 TraesCS3D01G147300 chr1A 88.889 936 54 12 333 1231 577775046 577775968 0.000000e+00 1107
14 TraesCS3D01G147300 chr1A 91.690 361 17 1 333 680 438338986 438339346 3.630000e-134 488
15 TraesCS3D01G147300 chr5D 93.741 2828 125 19 334 3134 513923932 513921130 0.000000e+00 4194
16 TraesCS3D01G147300 chr5D 95.246 2440 94 10 707 3134 369391277 369393706 0.000000e+00 3843
17 TraesCS3D01G147300 chr5D 91.337 935 42 9 333 1231 424889664 424890595 0.000000e+00 1242
18 TraesCS3D01G147300 chrUn 93.001 2829 162 10 334 3134 47747225 47744405 0.000000e+00 4095
19 TraesCS3D01G147300 chr6A 94.818 2393 106 8 755 3134 52805746 52803359 0.000000e+00 3716
20 TraesCS3D01G147300 chr6A 92.535 1862 87 21 334 2145 11867559 11865700 0.000000e+00 2621
21 TraesCS3D01G147300 chr3A 94.025 2410 118 18 726 3134 749126427 749124043 0.000000e+00 3629
22 TraesCS3D01G147300 chr3A 86.463 229 31 0 2 230 118563670 118563442 5.190000e-63 252
23 TraesCS3D01G147300 chr7A 88.242 927 73 14 333 1232 484713617 484714534 0.000000e+00 1075
24 TraesCS3D01G147300 chr7B 83.103 941 109 24 335 1231 382586778 382587712 0.000000e+00 811
25 TraesCS3D01G147300 chr5B 88.745 693 30 17 333 978 412436411 412435720 0.000000e+00 804
26 TraesCS3D01G147300 chr3B 91.692 325 27 0 7 331 162633851 162634175 4.770000e-123 451


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G147300 chr3D 111929714 111932847 3133 False 5788.0 5788 100.0000 1 3134 1 chr3D.!!$F1 3133
1 TraesCS3D01G147300 chr3D 54374824 54377675 2851 True 4196.0 4196 93.5160 333 3134 1 chr3D.!!$R1 2801
2 TraesCS3D01G147300 chr7D 252055517 252058359 2842 False 4381.0 4381 94.7240 333 3134 1 chr7D.!!$F1 2801
3 TraesCS3D01G147300 chr1D 342177474 342180322 2848 False 4370.0 4370 94.6390 333 3134 1 chr1D.!!$F1 2801
4 TraesCS3D01G147300 chr6D 62815664 62818179 2515 True 3949.0 3949 95.0460 625 3134 1 chr6D.!!$R1 2509
5 TraesCS3D01G147300 chr6D 315960124 315966505 6381 True 2758.5 4346 92.3185 333 3134 2 chr6D.!!$R2 2801
6 TraesCS3D01G147300 chr4A 72909852 72916276 6424 False 2721.0 4263 91.9620 333 3134 2 chr4A.!!$F1 2801
7 TraesCS3D01G147300 chr2A 612877298 612880138 2840 False 4252.0 4252 93.9230 334 3134 1 chr2A.!!$F1 2800
8 TraesCS3D01G147300 chr2A 591653890 591656737 2847 True 4226.0 4226 93.7520 334 3130 1 chr2A.!!$R1 2796
9 TraesCS3D01G147300 chr1A 430212968 430215800 2832 False 4222.0 4222 93.7810 333 3134 1 chr1A.!!$F2 2801
10 TraesCS3D01G147300 chr1A 323624315 323625755 1440 False 1790.0 1790 89.4380 334 1755 1 chr1A.!!$F1 1421
11 TraesCS3D01G147300 chr1A 577775046 577775968 922 False 1107.0 1107 88.8890 333 1231 1 chr1A.!!$F4 898
12 TraesCS3D01G147300 chr5D 513921130 513923932 2802 True 4194.0 4194 93.7410 334 3134 1 chr5D.!!$R1 2800
13 TraesCS3D01G147300 chr5D 369391277 369393706 2429 False 3843.0 3843 95.2460 707 3134 1 chr5D.!!$F1 2427
14 TraesCS3D01G147300 chr5D 424889664 424890595 931 False 1242.0 1242 91.3370 333 1231 1 chr5D.!!$F2 898
15 TraesCS3D01G147300 chrUn 47744405 47747225 2820 True 4095.0 4095 93.0010 334 3134 1 chrUn.!!$R1 2800
16 TraesCS3D01G147300 chr6A 52803359 52805746 2387 True 3716.0 3716 94.8180 755 3134 1 chr6A.!!$R2 2379
17 TraesCS3D01G147300 chr6A 11865700 11867559 1859 True 2621.0 2621 92.5350 334 2145 1 chr6A.!!$R1 1811
18 TraesCS3D01G147300 chr3A 749124043 749126427 2384 True 3629.0 3629 94.0250 726 3134 1 chr3A.!!$R2 2408
19 TraesCS3D01G147300 chr7A 484713617 484714534 917 False 1075.0 1075 88.2420 333 1232 1 chr7A.!!$F1 899
20 TraesCS3D01G147300 chr7B 382586778 382587712 934 False 811.0 811 83.1030 335 1231 1 chr7B.!!$F1 896
21 TraesCS3D01G147300 chr5B 412435720 412436411 691 True 804.0 804 88.7450 333 978 1 chr5B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.107081 TCGGGTGAAAACCACGACAT 59.893 50.0 0.0 0.0 46.62 3.06 F
999 1131 0.103208 GCAACCTCATCCTCGACGAT 59.897 55.0 0.0 0.0 0.00 3.73 F
1555 1688 0.250338 GAAGTTTGGTGCCTCGGACT 60.250 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1669 0.250338 AGTCCGAGGCACCAAACTTC 60.250 55.0 0.00 0.00 0.00 3.01 R
2057 2192 0.744771 GCTCCTCAAAGCGGTTAGGG 60.745 60.0 14.56 10.53 31.56 3.53 R
3032 3171 0.755686 GAGGTGAGTAGGGAGGCATG 59.244 60.0 0.00 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.163826 CGCTCGACATTTTGTCCATG 57.836 50.000 2.26 0.00 44.20 3.66
20 21 1.791555 CGCTCGACATTTTGTCCATGC 60.792 52.381 2.26 3.84 44.20 4.06
21 22 1.199789 GCTCGACATTTTGTCCATGCA 59.800 47.619 0.00 0.00 44.20 3.96
22 23 2.351641 GCTCGACATTTTGTCCATGCAA 60.352 45.455 0.00 0.00 44.20 4.08
23 24 3.495193 CTCGACATTTTGTCCATGCAAG 58.505 45.455 0.00 0.00 44.20 4.01
24 25 2.884012 TCGACATTTTGTCCATGCAAGT 59.116 40.909 0.00 0.00 44.20 3.16
25 26 2.981805 CGACATTTTGTCCATGCAAGTG 59.018 45.455 0.00 0.00 44.20 3.16
26 27 3.304592 CGACATTTTGTCCATGCAAGTGA 60.305 43.478 0.00 0.00 44.20 3.41
27 28 3.981211 ACATTTTGTCCATGCAAGTGAC 58.019 40.909 0.00 0.00 0.00 3.67
28 29 3.638160 ACATTTTGTCCATGCAAGTGACT 59.362 39.130 12.86 0.00 0.00 3.41
29 30 4.099881 ACATTTTGTCCATGCAAGTGACTT 59.900 37.500 12.86 0.00 0.00 3.01
30 31 3.988379 TTTGTCCATGCAAGTGACTTC 57.012 42.857 12.86 0.00 0.00 3.01
31 32 2.636647 TGTCCATGCAAGTGACTTCA 57.363 45.000 12.86 0.00 0.00 3.02
32 33 2.929641 TGTCCATGCAAGTGACTTCAA 58.070 42.857 12.86 0.00 0.00 2.69
33 34 3.489355 TGTCCATGCAAGTGACTTCAAT 58.511 40.909 12.86 0.00 0.00 2.57
34 35 3.253921 TGTCCATGCAAGTGACTTCAATG 59.746 43.478 12.86 2.42 0.00 2.82
35 36 3.254166 GTCCATGCAAGTGACTTCAATGT 59.746 43.478 12.96 0.00 0.00 2.71
36 37 3.890756 TCCATGCAAGTGACTTCAATGTT 59.109 39.130 12.96 0.00 0.00 2.71
37 38 4.341806 TCCATGCAAGTGACTTCAATGTTT 59.658 37.500 12.96 0.00 0.00 2.83
38 39 4.446385 CCATGCAAGTGACTTCAATGTTTG 59.554 41.667 12.96 3.64 0.00 2.93
39 40 4.717233 TGCAAGTGACTTCAATGTTTGT 57.283 36.364 0.00 0.00 0.00 2.83
40 41 4.671377 TGCAAGTGACTTCAATGTTTGTC 58.329 39.130 0.00 0.00 0.00 3.18
41 42 3.725740 GCAAGTGACTTCAATGTTTGTCG 59.274 43.478 0.00 0.00 32.64 4.35
42 43 4.282068 CAAGTGACTTCAATGTTTGTCGG 58.718 43.478 0.00 0.00 32.64 4.79
43 44 3.541632 AGTGACTTCAATGTTTGTCGGT 58.458 40.909 0.00 0.00 32.64 4.69
44 45 3.312421 AGTGACTTCAATGTTTGTCGGTG 59.688 43.478 0.00 0.00 32.64 4.94
45 46 3.064820 GTGACTTCAATGTTTGTCGGTGT 59.935 43.478 0.00 0.00 32.64 4.16
46 47 3.692101 TGACTTCAATGTTTGTCGGTGTT 59.308 39.130 0.00 0.00 32.64 3.32
47 48 4.027572 ACTTCAATGTTTGTCGGTGTTG 57.972 40.909 0.00 0.00 0.00 3.33
48 49 3.442273 ACTTCAATGTTTGTCGGTGTTGT 59.558 39.130 0.00 0.00 0.00 3.32
49 50 4.082463 ACTTCAATGTTTGTCGGTGTTGTT 60.082 37.500 0.00 0.00 0.00 2.83
50 51 4.442375 TCAATGTTTGTCGGTGTTGTTT 57.558 36.364 0.00 0.00 0.00 2.83
51 52 4.810790 TCAATGTTTGTCGGTGTTGTTTT 58.189 34.783 0.00 0.00 0.00 2.43
52 53 4.623167 TCAATGTTTGTCGGTGTTGTTTTG 59.377 37.500 0.00 0.00 0.00 2.44
53 54 3.644884 TGTTTGTCGGTGTTGTTTTGT 57.355 38.095 0.00 0.00 0.00 2.83
54 55 3.978687 TGTTTGTCGGTGTTGTTTTGTT 58.021 36.364 0.00 0.00 0.00 2.83
55 56 5.117355 TGTTTGTCGGTGTTGTTTTGTTA 57.883 34.783 0.00 0.00 0.00 2.41
56 57 5.154932 TGTTTGTCGGTGTTGTTTTGTTAG 58.845 37.500 0.00 0.00 0.00 2.34
57 58 5.155643 GTTTGTCGGTGTTGTTTTGTTAGT 58.844 37.500 0.00 0.00 0.00 2.24
58 59 5.373981 TTGTCGGTGTTGTTTTGTTAGTT 57.626 34.783 0.00 0.00 0.00 2.24
59 60 4.724303 TGTCGGTGTTGTTTTGTTAGTTG 58.276 39.130 0.00 0.00 0.00 3.16
60 61 4.099824 GTCGGTGTTGTTTTGTTAGTTGG 58.900 43.478 0.00 0.00 0.00 3.77
61 62 4.008330 TCGGTGTTGTTTTGTTAGTTGGA 58.992 39.130 0.00 0.00 0.00 3.53
62 63 4.095185 TCGGTGTTGTTTTGTTAGTTGGAG 59.905 41.667 0.00 0.00 0.00 3.86
63 64 4.678622 GGTGTTGTTTTGTTAGTTGGAGG 58.321 43.478 0.00 0.00 0.00 4.30
64 65 4.158949 GGTGTTGTTTTGTTAGTTGGAGGT 59.841 41.667 0.00 0.00 0.00 3.85
65 66 5.337554 GTGTTGTTTTGTTAGTTGGAGGTC 58.662 41.667 0.00 0.00 0.00 3.85
66 67 5.124936 GTGTTGTTTTGTTAGTTGGAGGTCT 59.875 40.000 0.00 0.00 0.00 3.85
67 68 5.124776 TGTTGTTTTGTTAGTTGGAGGTCTG 59.875 40.000 0.00 0.00 0.00 3.51
68 69 5.105567 TGTTTTGTTAGTTGGAGGTCTGA 57.894 39.130 0.00 0.00 0.00 3.27
69 70 5.502079 TGTTTTGTTAGTTGGAGGTCTGAA 58.498 37.500 0.00 0.00 0.00 3.02
70 71 5.355910 TGTTTTGTTAGTTGGAGGTCTGAAC 59.644 40.000 0.00 0.00 0.00 3.18
71 72 3.380479 TGTTAGTTGGAGGTCTGAACG 57.620 47.619 0.00 0.00 0.00 3.95
72 73 2.960384 TGTTAGTTGGAGGTCTGAACGA 59.040 45.455 0.00 0.00 0.00 3.85
73 74 3.005472 TGTTAGTTGGAGGTCTGAACGAG 59.995 47.826 0.00 0.00 0.00 4.18
74 75 0.969894 AGTTGGAGGTCTGAACGAGG 59.030 55.000 0.00 0.00 0.00 4.63
75 76 0.966920 GTTGGAGGTCTGAACGAGGA 59.033 55.000 0.00 0.00 0.00 3.71
76 77 1.067495 GTTGGAGGTCTGAACGAGGAG 60.067 57.143 0.00 0.00 0.00 3.69
77 78 0.404426 TGGAGGTCTGAACGAGGAGA 59.596 55.000 0.00 0.00 0.00 3.71
78 79 1.006043 TGGAGGTCTGAACGAGGAGAT 59.994 52.381 0.00 0.00 0.00 2.75
79 80 1.679153 GGAGGTCTGAACGAGGAGATC 59.321 57.143 0.00 0.00 0.00 2.75
80 81 2.650322 GAGGTCTGAACGAGGAGATCT 58.350 52.381 0.00 0.00 32.06 2.75
81 82 3.020984 GAGGTCTGAACGAGGAGATCTT 58.979 50.000 0.00 0.00 29.39 2.40
82 83 2.757868 AGGTCTGAACGAGGAGATCTTG 59.242 50.000 0.00 0.00 0.00 3.02
83 84 2.535331 GTCTGAACGAGGAGATCTTGC 58.465 52.381 0.00 0.00 0.00 4.01
84 85 2.094494 GTCTGAACGAGGAGATCTTGCA 60.094 50.000 0.00 0.00 0.00 4.08
85 86 2.094494 TCTGAACGAGGAGATCTTGCAC 60.094 50.000 0.00 0.00 0.00 4.57
86 87 1.066858 TGAACGAGGAGATCTTGCACC 60.067 52.381 0.00 0.00 0.00 5.01
87 88 1.205893 GAACGAGGAGATCTTGCACCT 59.794 52.381 0.00 0.00 35.29 4.00
88 89 0.820871 ACGAGGAGATCTTGCACCTC 59.179 55.000 15.26 15.26 43.58 3.85
89 90 1.110442 CGAGGAGATCTTGCACCTCT 58.890 55.000 20.34 4.69 44.47 3.69
90 91 1.480137 CGAGGAGATCTTGCACCTCTT 59.520 52.381 20.34 3.73 44.47 2.85
91 92 2.481104 CGAGGAGATCTTGCACCTCTTC 60.481 54.545 20.34 10.42 44.47 2.87
92 93 1.836802 AGGAGATCTTGCACCTCTTCC 59.163 52.381 0.00 0.00 0.00 3.46
93 94 1.134250 GGAGATCTTGCACCTCTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
94 95 1.556911 GAGATCTTGCACCTCTTCCCA 59.443 52.381 0.00 0.00 0.00 4.37
95 96 1.280421 AGATCTTGCACCTCTTCCCAC 59.720 52.381 0.00 0.00 0.00 4.61
96 97 1.280421 GATCTTGCACCTCTTCCCACT 59.720 52.381 0.00 0.00 0.00 4.00
97 98 1.140312 TCTTGCACCTCTTCCCACTT 58.860 50.000 0.00 0.00 0.00 3.16
98 99 1.494721 TCTTGCACCTCTTCCCACTTT 59.505 47.619 0.00 0.00 0.00 2.66
99 100 2.708861 TCTTGCACCTCTTCCCACTTTA 59.291 45.455 0.00 0.00 0.00 1.85
100 101 2.859165 TGCACCTCTTCCCACTTTAG 57.141 50.000 0.00 0.00 0.00 1.85
101 102 1.351017 TGCACCTCTTCCCACTTTAGG 59.649 52.381 0.00 0.00 0.00 2.69
102 103 1.628846 GCACCTCTTCCCACTTTAGGA 59.371 52.381 0.00 0.00 0.00 2.94
103 104 2.239907 GCACCTCTTCCCACTTTAGGAT 59.760 50.000 0.00 0.00 32.10 3.24
104 105 3.682999 GCACCTCTTCCCACTTTAGGATC 60.683 52.174 0.00 0.00 32.10 3.36
105 106 3.777522 CACCTCTTCCCACTTTAGGATCT 59.222 47.826 0.00 0.00 32.10 2.75
106 107 4.226168 CACCTCTTCCCACTTTAGGATCTT 59.774 45.833 0.00 0.00 32.10 2.40
107 108 5.425539 CACCTCTTCCCACTTTAGGATCTTA 59.574 44.000 0.00 0.00 32.10 2.10
108 109 6.100424 CACCTCTTCCCACTTTAGGATCTTAT 59.900 42.308 0.00 0.00 32.10 1.73
109 110 6.327887 ACCTCTTCCCACTTTAGGATCTTATC 59.672 42.308 0.00 0.00 32.10 1.75
110 111 6.556874 CCTCTTCCCACTTTAGGATCTTATCT 59.443 42.308 0.00 0.00 32.10 1.98
111 112 7.071824 CCTCTTCCCACTTTAGGATCTTATCTT 59.928 40.741 0.00 0.00 32.10 2.40
112 113 8.024145 TCTTCCCACTTTAGGATCTTATCTTC 57.976 38.462 0.00 0.00 32.10 2.87
113 114 6.406692 TCCCACTTTAGGATCTTATCTTCG 57.593 41.667 0.00 0.00 0.00 3.79
114 115 5.304614 TCCCACTTTAGGATCTTATCTTCGG 59.695 44.000 0.00 0.00 0.00 4.30
115 116 5.511545 CCCACTTTAGGATCTTATCTTCGGG 60.512 48.000 0.00 0.00 0.00 5.14
116 117 5.070580 CCACTTTAGGATCTTATCTTCGGGT 59.929 44.000 0.00 0.00 0.00 5.28
117 118 5.986135 CACTTTAGGATCTTATCTTCGGGTG 59.014 44.000 0.00 0.00 0.00 4.61
118 119 5.897824 ACTTTAGGATCTTATCTTCGGGTGA 59.102 40.000 0.00 0.00 0.00 4.02
119 120 6.383147 ACTTTAGGATCTTATCTTCGGGTGAA 59.617 38.462 0.00 0.00 0.00 3.18
120 121 6.801718 TTAGGATCTTATCTTCGGGTGAAA 57.198 37.500 0.00 0.00 32.66 2.69
121 122 5.693769 AGGATCTTATCTTCGGGTGAAAA 57.306 39.130 0.00 0.00 32.66 2.29
122 123 5.429130 AGGATCTTATCTTCGGGTGAAAAC 58.571 41.667 0.00 0.00 32.66 2.43
123 124 4.575236 GGATCTTATCTTCGGGTGAAAACC 59.425 45.833 0.00 0.00 32.66 3.27
124 125 4.627284 TCTTATCTTCGGGTGAAAACCA 57.373 40.909 0.00 0.00 32.66 3.67
125 126 4.320870 TCTTATCTTCGGGTGAAAACCAC 58.679 43.478 0.00 0.00 44.95 4.16
126 127 1.519408 ATCTTCGGGTGAAAACCACG 58.481 50.000 0.00 0.00 46.62 4.94
127 128 0.464870 TCTTCGGGTGAAAACCACGA 59.535 50.000 0.00 1.37 46.62 4.35
128 129 0.584876 CTTCGGGTGAAAACCACGAC 59.415 55.000 7.63 0.00 46.62 4.34
129 130 0.107800 TTCGGGTGAAAACCACGACA 60.108 50.000 7.63 0.00 46.62 4.35
130 131 0.107081 TCGGGTGAAAACCACGACAT 59.893 50.000 0.00 0.00 46.62 3.06
131 132 0.237235 CGGGTGAAAACCACGACATG 59.763 55.000 0.00 0.00 46.62 3.21
139 140 3.803082 CCACGACATGGCTTGCCG 61.803 66.667 7.51 7.51 43.24 5.69
140 141 3.803082 CACGACATGGCTTGCCGG 61.803 66.667 13.15 0.00 35.26 6.13
141 142 4.015406 ACGACATGGCTTGCCGGA 62.015 61.111 5.05 0.00 35.26 5.14
142 143 2.514592 CGACATGGCTTGCCGGAT 60.515 61.111 5.05 0.00 0.00 4.18
143 144 2.114670 CGACATGGCTTGCCGGATT 61.115 57.895 5.05 0.00 0.00 3.01
144 145 0.813610 CGACATGGCTTGCCGGATTA 60.814 55.000 5.05 0.00 0.00 1.75
145 146 0.947244 GACATGGCTTGCCGGATTAG 59.053 55.000 5.05 0.00 0.00 1.73
146 147 0.255890 ACATGGCTTGCCGGATTAGT 59.744 50.000 5.05 0.00 0.00 2.24
147 148 0.664761 CATGGCTTGCCGGATTAGTG 59.335 55.000 5.05 0.00 0.00 2.74
148 149 0.546122 ATGGCTTGCCGGATTAGTGA 59.454 50.000 5.05 0.00 0.00 3.41
149 150 0.546122 TGGCTTGCCGGATTAGTGAT 59.454 50.000 5.05 0.00 0.00 3.06
150 151 0.947244 GGCTTGCCGGATTAGTGATG 59.053 55.000 5.05 0.00 0.00 3.07
151 152 1.668419 GCTTGCCGGATTAGTGATGT 58.332 50.000 5.05 0.00 0.00 3.06
152 153 1.331756 GCTTGCCGGATTAGTGATGTG 59.668 52.381 5.05 0.00 0.00 3.21
153 154 1.942657 CTTGCCGGATTAGTGATGTGG 59.057 52.381 5.05 0.00 0.00 4.17
154 155 0.908910 TGCCGGATTAGTGATGTGGT 59.091 50.000 5.05 0.00 0.00 4.16
155 156 1.299541 GCCGGATTAGTGATGTGGTG 58.700 55.000 5.05 0.00 0.00 4.17
156 157 1.406887 GCCGGATTAGTGATGTGGTGT 60.407 52.381 5.05 0.00 0.00 4.16
157 158 2.550978 CCGGATTAGTGATGTGGTGTC 58.449 52.381 0.00 0.00 0.00 3.67
158 159 2.550978 CGGATTAGTGATGTGGTGTCC 58.449 52.381 0.00 0.00 0.00 4.02
159 160 2.741878 CGGATTAGTGATGTGGTGTCCC 60.742 54.545 0.00 0.00 0.00 4.46
160 161 2.505819 GGATTAGTGATGTGGTGTCCCT 59.494 50.000 0.00 0.00 0.00 4.20
161 162 3.432326 GGATTAGTGATGTGGTGTCCCTC 60.432 52.174 0.00 0.00 0.00 4.30
162 163 1.182667 TAGTGATGTGGTGTCCCTCG 58.817 55.000 0.00 0.00 0.00 4.63
163 164 1.741770 GTGATGTGGTGTCCCTCGC 60.742 63.158 0.00 0.00 0.00 5.03
164 165 2.509336 GATGTGGTGTCCCTCGCG 60.509 66.667 0.00 0.00 0.00 5.87
165 166 3.296709 GATGTGGTGTCCCTCGCGT 62.297 63.158 5.77 0.00 0.00 6.01
166 167 2.781595 GATGTGGTGTCCCTCGCGTT 62.782 60.000 5.77 0.00 0.00 4.84
167 168 3.041940 GTGGTGTCCCTCGCGTTG 61.042 66.667 5.77 0.00 0.00 4.10
168 169 3.542676 TGGTGTCCCTCGCGTTGT 61.543 61.111 5.77 0.00 0.00 3.32
169 170 2.280592 GGTGTCCCTCGCGTTGTT 60.281 61.111 5.77 0.00 0.00 2.83
170 171 1.005867 GGTGTCCCTCGCGTTGTTA 60.006 57.895 5.77 0.00 0.00 2.41
171 172 0.390735 GGTGTCCCTCGCGTTGTTAT 60.391 55.000 5.77 0.00 0.00 1.89
172 173 1.435577 GTGTCCCTCGCGTTGTTATT 58.564 50.000 5.77 0.00 0.00 1.40
173 174 1.802365 GTGTCCCTCGCGTTGTTATTT 59.198 47.619 5.77 0.00 0.00 1.40
174 175 2.995258 GTGTCCCTCGCGTTGTTATTTA 59.005 45.455 5.77 0.00 0.00 1.40
175 176 3.432933 GTGTCCCTCGCGTTGTTATTTAA 59.567 43.478 5.77 0.00 0.00 1.52
176 177 4.093850 GTGTCCCTCGCGTTGTTATTTAAT 59.906 41.667 5.77 0.00 0.00 1.40
177 178 4.696402 TGTCCCTCGCGTTGTTATTTAATT 59.304 37.500 5.77 0.00 0.00 1.40
178 179 5.025826 GTCCCTCGCGTTGTTATTTAATTG 58.974 41.667 5.77 0.00 0.00 2.32
179 180 4.095185 TCCCTCGCGTTGTTATTTAATTGG 59.905 41.667 5.77 0.00 0.00 3.16
180 181 4.095185 CCCTCGCGTTGTTATTTAATTGGA 59.905 41.667 5.77 0.00 0.00 3.53
181 182 5.392165 CCCTCGCGTTGTTATTTAATTGGAA 60.392 40.000 5.77 0.00 0.00 3.53
182 183 5.737290 CCTCGCGTTGTTATTTAATTGGAAG 59.263 40.000 5.77 0.00 0.00 3.46
183 184 5.090083 TCGCGTTGTTATTTAATTGGAAGC 58.910 37.500 5.77 0.00 0.00 3.86
184 185 4.854291 CGCGTTGTTATTTAATTGGAAGCA 59.146 37.500 0.00 0.00 0.00 3.91
185 186 5.514914 CGCGTTGTTATTTAATTGGAAGCAT 59.485 36.000 0.00 0.00 0.00 3.79
186 187 6.506200 CGCGTTGTTATTTAATTGGAAGCATG 60.506 38.462 0.00 0.00 0.00 4.06
187 188 6.529829 GCGTTGTTATTTAATTGGAAGCATGA 59.470 34.615 0.00 0.00 0.00 3.07
188 189 7.222611 GCGTTGTTATTTAATTGGAAGCATGAT 59.777 33.333 0.00 0.00 0.00 2.45
189 190 9.086336 CGTTGTTATTTAATTGGAAGCATGATT 57.914 29.630 0.00 0.00 0.00 2.57
194 195 6.740411 TTTAATTGGAAGCATGATTTTGGC 57.260 33.333 0.00 0.00 0.00 4.52
195 196 3.985019 ATTGGAAGCATGATTTTGGCA 57.015 38.095 0.00 0.00 0.00 4.92
196 197 3.766068 TTGGAAGCATGATTTTGGCAA 57.234 38.095 0.00 0.00 0.00 4.52
197 198 3.042871 TGGAAGCATGATTTTGGCAAC 57.957 42.857 0.00 0.00 0.00 4.17
215 216 7.038154 TGGCAACATAATATTTGGTTAGAGC 57.962 36.000 0.00 0.00 46.17 4.09
216 217 6.605194 TGGCAACATAATATTTGGTTAGAGCA 59.395 34.615 0.00 0.00 46.17 4.26
217 218 6.918022 GGCAACATAATATTTGGTTAGAGCAC 59.082 38.462 0.00 0.00 0.00 4.40
218 219 6.918022 GCAACATAATATTTGGTTAGAGCACC 59.082 38.462 0.00 0.00 37.34 5.01
219 220 7.201821 GCAACATAATATTTGGTTAGAGCACCT 60.202 37.037 0.00 0.00 37.75 4.00
220 221 7.807977 ACATAATATTTGGTTAGAGCACCTG 57.192 36.000 0.00 0.00 37.75 4.00
221 222 6.772716 ACATAATATTTGGTTAGAGCACCTGG 59.227 38.462 0.00 0.00 37.75 4.45
222 223 1.839424 ATTTGGTTAGAGCACCTGGC 58.161 50.000 0.00 0.00 45.30 4.85
231 232 2.203337 GCACCTGGCTTGTGGTCA 60.203 61.111 8.63 0.00 40.25 4.02
232 233 2.263741 GCACCTGGCTTGTGGTCAG 61.264 63.158 8.63 0.00 46.41 3.51
235 236 2.674380 CTGGCTTGTGGTCAGGGC 60.674 66.667 0.00 0.00 43.40 5.19
237 238 2.036256 GGCTTGTGGTCAGGGCAT 59.964 61.111 0.00 0.00 43.64 4.40
238 239 1.607467 GGCTTGTGGTCAGGGCATT 60.607 57.895 0.00 0.00 43.64 3.56
239 240 1.588082 GCTTGTGGTCAGGGCATTG 59.412 57.895 0.00 0.00 0.00 2.82
240 241 1.880819 GCTTGTGGTCAGGGCATTGG 61.881 60.000 0.00 0.00 0.00 3.16
241 242 1.880819 CTTGTGGTCAGGGCATTGGC 61.881 60.000 0.70 0.70 40.13 4.52
242 243 2.036256 GTGGTCAGGGCATTGGCT 59.964 61.111 10.31 0.00 40.87 4.75
243 244 2.036098 TGGTCAGGGCATTGGCTG 59.964 61.111 10.31 6.73 40.87 4.85
244 245 2.356278 GGTCAGGGCATTGGCTGA 59.644 61.111 10.31 8.85 40.87 4.26
245 246 1.751927 GGTCAGGGCATTGGCTGAG 60.752 63.158 10.31 0.95 40.87 3.35
246 247 1.300963 GTCAGGGCATTGGCTGAGA 59.699 57.895 10.31 3.29 40.87 3.27
247 248 0.322816 GTCAGGGCATTGGCTGAGAA 60.323 55.000 10.31 0.00 40.87 2.87
248 249 0.627451 TCAGGGCATTGGCTGAGAAT 59.373 50.000 10.31 0.00 40.87 2.40
249 250 1.030457 CAGGGCATTGGCTGAGAATC 58.970 55.000 10.31 0.00 40.87 2.52
250 251 0.465097 AGGGCATTGGCTGAGAATCG 60.465 55.000 10.31 0.00 40.87 3.34
251 252 0.464373 GGGCATTGGCTGAGAATCGA 60.464 55.000 10.31 0.00 40.87 3.59
252 253 1.602311 GGCATTGGCTGAGAATCGAT 58.398 50.000 2.42 0.00 40.87 3.59
253 254 1.266175 GGCATTGGCTGAGAATCGATG 59.734 52.381 0.00 0.00 40.87 3.84
254 255 1.266175 GCATTGGCTGAGAATCGATGG 59.734 52.381 0.00 0.00 38.61 3.51
255 256 2.569059 CATTGGCTGAGAATCGATGGT 58.431 47.619 0.00 0.00 38.61 3.55
256 257 2.787473 TTGGCTGAGAATCGATGGTT 57.213 45.000 0.00 0.00 38.61 3.67
257 258 2.028420 TGGCTGAGAATCGATGGTTG 57.972 50.000 0.00 0.00 38.61 3.77
258 259 1.278985 TGGCTGAGAATCGATGGTTGT 59.721 47.619 0.00 0.00 38.61 3.32
259 260 2.499693 TGGCTGAGAATCGATGGTTGTA 59.500 45.455 0.00 0.00 38.61 2.41
260 261 3.134623 TGGCTGAGAATCGATGGTTGTAT 59.865 43.478 0.00 0.00 38.61 2.29
261 262 3.743396 GGCTGAGAATCGATGGTTGTATC 59.257 47.826 0.00 0.00 38.61 2.24
262 263 4.371786 GCTGAGAATCGATGGTTGTATCA 58.628 43.478 0.00 0.00 38.61 2.15
263 264 4.993584 GCTGAGAATCGATGGTTGTATCAT 59.006 41.667 0.00 0.00 38.61 2.45
264 265 5.468072 GCTGAGAATCGATGGTTGTATCATT 59.532 40.000 0.00 0.00 38.61 2.57
265 266 6.646653 GCTGAGAATCGATGGTTGTATCATTA 59.353 38.462 0.00 0.00 38.61 1.90
266 267 7.148672 GCTGAGAATCGATGGTTGTATCATTAG 60.149 40.741 0.00 0.00 38.61 1.73
267 268 7.726216 TGAGAATCGATGGTTGTATCATTAGT 58.274 34.615 0.00 0.00 38.61 2.24
268 269 7.653311 TGAGAATCGATGGTTGTATCATTAGTG 59.347 37.037 0.00 0.00 38.61 2.74
269 270 7.500992 AGAATCGATGGTTGTATCATTAGTGT 58.499 34.615 0.00 0.00 0.00 3.55
270 271 7.439356 AGAATCGATGGTTGTATCATTAGTGTG 59.561 37.037 0.00 0.00 0.00 3.82
271 272 5.972935 TCGATGGTTGTATCATTAGTGTGT 58.027 37.500 0.00 0.00 0.00 3.72
272 273 6.403049 TCGATGGTTGTATCATTAGTGTGTT 58.597 36.000 0.00 0.00 0.00 3.32
273 274 6.312672 TCGATGGTTGTATCATTAGTGTGTTG 59.687 38.462 0.00 0.00 0.00 3.33
274 275 6.092122 CGATGGTTGTATCATTAGTGTGTTGT 59.908 38.462 0.00 0.00 0.00 3.32
275 276 6.552859 TGGTTGTATCATTAGTGTGTTGTG 57.447 37.500 0.00 0.00 0.00 3.33
276 277 5.049060 TGGTTGTATCATTAGTGTGTTGTGC 60.049 40.000 0.00 0.00 0.00 4.57
277 278 5.390613 GTTGTATCATTAGTGTGTTGTGCC 58.609 41.667 0.00 0.00 0.00 5.01
278 279 4.905429 TGTATCATTAGTGTGTTGTGCCT 58.095 39.130 0.00 0.00 0.00 4.75
279 280 4.694982 TGTATCATTAGTGTGTTGTGCCTG 59.305 41.667 0.00 0.00 0.00 4.85
280 281 1.879380 TCATTAGTGTGTTGTGCCTGC 59.121 47.619 0.00 0.00 0.00 4.85
281 282 0.874390 ATTAGTGTGTTGTGCCTGCG 59.126 50.000 0.00 0.00 0.00 5.18
282 283 0.179070 TTAGTGTGTTGTGCCTGCGA 60.179 50.000 0.00 0.00 0.00 5.10
283 284 0.599991 TAGTGTGTTGTGCCTGCGAG 60.600 55.000 0.00 0.00 0.00 5.03
284 285 2.591429 TGTGTTGTGCCTGCGAGG 60.591 61.111 0.00 0.00 38.80 4.63
285 286 2.591715 GTGTTGTGCCTGCGAGGT 60.592 61.111 4.45 0.00 37.80 3.85
286 287 2.186826 GTGTTGTGCCTGCGAGGTT 61.187 57.895 4.45 0.00 37.80 3.50
287 288 2.186160 TGTTGTGCCTGCGAGGTTG 61.186 57.895 4.45 0.00 37.80 3.77
288 289 3.286751 TTGTGCCTGCGAGGTTGC 61.287 61.111 4.45 0.00 37.80 4.17
289 290 4.560743 TGTGCCTGCGAGGTTGCA 62.561 61.111 4.45 0.00 43.95 4.08
290 291 3.286751 GTGCCTGCGAGGTTGCAA 61.287 61.111 0.00 0.00 45.74 4.08
291 292 2.518112 TGCCTGCGAGGTTGCAAA 60.518 55.556 0.00 0.00 45.74 3.68
292 293 2.124060 TGCCTGCGAGGTTGCAAAA 61.124 52.632 0.00 0.00 45.74 2.44
293 294 1.372128 GCCTGCGAGGTTGCAAAAG 60.372 57.895 0.00 0.00 45.74 2.27
294 295 2.032981 CCTGCGAGGTTGCAAAAGT 58.967 52.632 0.00 0.00 45.74 2.66
295 296 0.385390 CCTGCGAGGTTGCAAAAGTT 59.615 50.000 0.00 0.00 45.74 2.66
296 297 1.202405 CCTGCGAGGTTGCAAAAGTTT 60.202 47.619 0.00 0.00 45.74 2.66
297 298 2.119457 CTGCGAGGTTGCAAAAGTTTC 58.881 47.619 0.00 0.00 45.74 2.78
298 299 1.120437 GCGAGGTTGCAAAAGTTTCG 58.880 50.000 0.00 7.75 34.15 3.46
299 300 1.533129 GCGAGGTTGCAAAAGTTTCGT 60.533 47.619 0.00 0.00 34.15 3.85
300 301 2.792749 CGAGGTTGCAAAAGTTTCGTT 58.207 42.857 0.00 0.00 0.00 3.85
301 302 2.529894 CGAGGTTGCAAAAGTTTCGTTG 59.470 45.455 0.00 0.00 0.00 4.10
302 303 3.729462 CGAGGTTGCAAAAGTTTCGTTGA 60.729 43.478 0.00 0.00 0.00 3.18
303 304 3.507786 AGGTTGCAAAAGTTTCGTTGAC 58.492 40.909 0.00 0.00 0.00 3.18
304 305 3.057174 AGGTTGCAAAAGTTTCGTTGACA 60.057 39.130 0.00 0.00 0.00 3.58
305 306 3.862845 GGTTGCAAAAGTTTCGTTGACAT 59.137 39.130 0.00 0.00 0.00 3.06
306 307 4.259770 GGTTGCAAAAGTTTCGTTGACATG 60.260 41.667 0.00 0.00 0.00 3.21
307 308 4.103365 TGCAAAAGTTTCGTTGACATGT 57.897 36.364 0.00 0.00 0.00 3.21
308 309 3.856521 TGCAAAAGTTTCGTTGACATGTG 59.143 39.130 1.15 0.00 0.00 3.21
309 310 3.242712 GCAAAAGTTTCGTTGACATGTGG 59.757 43.478 1.15 0.00 0.00 4.17
310 311 4.420168 CAAAAGTTTCGTTGACATGTGGT 58.580 39.130 1.15 0.00 0.00 4.16
311 312 5.574082 CAAAAGTTTCGTTGACATGTGGTA 58.426 37.500 1.15 0.00 0.00 3.25
312 313 5.821516 AAAGTTTCGTTGACATGTGGTAA 57.178 34.783 1.15 0.00 0.00 2.85
313 314 5.821516 AAGTTTCGTTGACATGTGGTAAA 57.178 34.783 1.15 0.00 0.00 2.01
314 315 5.821516 AGTTTCGTTGACATGTGGTAAAA 57.178 34.783 1.15 0.00 0.00 1.52
315 316 5.575019 AGTTTCGTTGACATGTGGTAAAAC 58.425 37.500 1.15 7.61 0.00 2.43
316 317 5.355910 AGTTTCGTTGACATGTGGTAAAACT 59.644 36.000 1.15 9.73 31.54 2.66
317 318 6.539464 AGTTTCGTTGACATGTGGTAAAACTA 59.461 34.615 1.15 0.00 33.88 2.24
318 319 6.533819 TTCGTTGACATGTGGTAAAACTAG 57.466 37.500 1.15 0.00 0.00 2.57
319 320 5.603596 TCGTTGACATGTGGTAAAACTAGT 58.396 37.500 1.15 0.00 0.00 2.57
320 321 6.050432 TCGTTGACATGTGGTAAAACTAGTT 58.950 36.000 1.15 1.12 0.00 2.24
321 322 6.018588 TCGTTGACATGTGGTAAAACTAGTTG 60.019 38.462 9.34 0.00 0.00 3.16
322 323 6.435428 GTTGACATGTGGTAAAACTAGTTGG 58.565 40.000 9.34 0.00 0.00 3.77
323 324 5.931294 TGACATGTGGTAAAACTAGTTGGA 58.069 37.500 9.34 0.00 0.00 3.53
324 325 5.761234 TGACATGTGGTAAAACTAGTTGGAC 59.239 40.000 9.34 9.98 0.00 4.02
325 326 4.753107 ACATGTGGTAAAACTAGTTGGACG 59.247 41.667 9.34 0.59 0.00 4.79
326 327 4.405116 TGTGGTAAAACTAGTTGGACGT 57.595 40.909 9.34 0.00 0.00 4.34
327 328 4.768583 TGTGGTAAAACTAGTTGGACGTT 58.231 39.130 9.34 1.71 0.00 3.99
328 329 4.571580 TGTGGTAAAACTAGTTGGACGTTG 59.428 41.667 9.34 0.00 0.00 4.10
329 330 4.810491 GTGGTAAAACTAGTTGGACGTTGA 59.190 41.667 9.34 0.00 0.00 3.18
330 331 4.810491 TGGTAAAACTAGTTGGACGTTGAC 59.190 41.667 9.34 0.00 0.00 3.18
331 332 5.052481 GGTAAAACTAGTTGGACGTTGACT 58.948 41.667 9.34 0.00 0.00 3.41
540 541 3.966026 GAGACCTACACGCGCGCTT 62.966 63.158 32.58 18.79 0.00 4.68
592 648 1.003580 GGTTGTGGGATTGAGCTGAGA 59.996 52.381 0.00 0.00 0.00 3.27
752 827 1.623811 CCTGGCCCGCACTATATAGTT 59.376 52.381 12.87 0.00 33.46 2.24
999 1131 0.103208 GCAACCTCATCCTCGACGAT 59.897 55.000 0.00 0.00 0.00 3.73
1068 1200 6.986817 CGTATGTGATTCTATCCTTCCTGTTT 59.013 38.462 0.00 0.00 0.00 2.83
1118 1250 5.645201 AGTATGTGCCCTAGATGTGATCTA 58.355 41.667 0.00 0.00 40.76 1.98
1131 1263 9.955208 CTAGATGTGATCTATTCATCTGCTATC 57.045 37.037 21.42 0.00 44.95 2.08
1264 1397 6.183361 ACCTGATTATAGGCAATTTACTCCGT 60.183 38.462 0.00 0.00 41.75 4.69
1366 1499 1.216064 TCAGACCATGGGCTGCTATT 58.784 50.000 38.80 5.72 30.75 1.73
1536 1669 4.147449 TGGGATGTGCTCGAGGCG 62.147 66.667 15.58 0.00 45.43 5.52
1555 1688 0.250338 GAAGTTTGGTGCCTCGGACT 60.250 55.000 0.00 0.00 0.00 3.85
1601 1734 6.341316 TGGAGCAATTCTATGACTACAAGAC 58.659 40.000 0.00 0.00 0.00 3.01
1644 1777 2.502947 ACAGCAGGCTCATGAGATACAA 59.497 45.455 27.04 0.00 0.00 2.41
1993 2128 9.793259 ACATTCTACCAACTTCAAGAAGAATTA 57.207 29.630 16.16 2.14 40.79 1.40
2057 2192 2.527951 ATCACTGGGCTCCGAAGTGC 62.528 60.000 12.78 0.00 40.89 4.40
2135 2270 7.049799 TGTCATCGGTGATACTGATATGAAA 57.950 36.000 0.00 0.00 42.02 2.69
2149 2284 6.724893 TGATATGAAAGAATCAGGGTACGA 57.275 37.500 0.00 0.00 42.53 3.43
2186 2321 5.528600 TCCTTTCAGTATTTCAATCCCCA 57.471 39.130 0.00 0.00 0.00 4.96
2255 2390 4.522789 GCCTCCATGTTTTCTTCTTACCAA 59.477 41.667 0.00 0.00 0.00 3.67
2351 2486 3.999046 GAAGTTTACTTCGGGGAAGACA 58.001 45.455 12.00 0.00 41.71 3.41
2352 2487 4.576879 GAAGTTTACTTCGGGGAAGACAT 58.423 43.478 12.00 0.00 41.71 3.06
2406 2544 7.465379 CGTCCATCAATAAAAATCTCGTTAGCA 60.465 37.037 0.00 0.00 0.00 3.49
2493 2631 9.927668 CTAAGTATGGACAATTTGTTGGAAAAT 57.072 29.630 3.08 0.00 0.00 1.82
2612 2751 6.086222 GCATTCACGACTTTGTCACATTAAT 58.914 36.000 0.00 0.00 32.09 1.40
2800 2939 2.483877 GTGAGATGAATGGCGTGTTGAA 59.516 45.455 0.00 0.00 0.00 2.69
2949 3088 9.981114 AGAACCAACTTGATCGAAAAATTAAAT 57.019 25.926 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.983344 GTCACTTGCATGGACAAAATGTC 59.017 43.478 4.44 1.88 46.23 3.06
6 7 3.638160 AGTCACTTGCATGGACAAAATGT 59.362 39.130 17.40 0.00 34.04 2.71
7 8 4.247267 AGTCACTTGCATGGACAAAATG 57.753 40.909 17.40 2.30 34.04 2.32
8 9 4.341806 TGAAGTCACTTGCATGGACAAAAT 59.658 37.500 17.40 6.40 34.04 1.82
9 10 3.698539 TGAAGTCACTTGCATGGACAAAA 59.301 39.130 17.40 5.49 34.04 2.44
10 11 3.286353 TGAAGTCACTTGCATGGACAAA 58.714 40.909 17.40 5.73 34.04 2.83
11 12 2.929641 TGAAGTCACTTGCATGGACAA 58.070 42.857 17.40 0.00 34.04 3.18
12 13 2.636647 TGAAGTCACTTGCATGGACA 57.363 45.000 17.40 0.00 34.04 4.02
13 14 3.254166 ACATTGAAGTCACTTGCATGGAC 59.746 43.478 0.00 8.44 0.00 4.02
14 15 3.489355 ACATTGAAGTCACTTGCATGGA 58.511 40.909 0.00 0.00 0.00 3.41
15 16 3.928727 ACATTGAAGTCACTTGCATGG 57.071 42.857 0.00 0.00 0.00 3.66
16 17 5.045215 ACAAACATTGAAGTCACTTGCATG 58.955 37.500 0.00 0.00 0.00 4.06
17 18 5.266733 ACAAACATTGAAGTCACTTGCAT 57.733 34.783 0.00 0.00 0.00 3.96
18 19 4.671377 GACAAACATTGAAGTCACTTGCA 58.329 39.130 0.00 0.00 0.00 4.08
19 20 3.725740 CGACAAACATTGAAGTCACTTGC 59.274 43.478 0.00 0.00 0.00 4.01
20 21 4.201910 ACCGACAAACATTGAAGTCACTTG 60.202 41.667 0.00 0.00 0.00 3.16
21 22 3.945285 ACCGACAAACATTGAAGTCACTT 59.055 39.130 0.00 0.00 0.00 3.16
22 23 3.312421 CACCGACAAACATTGAAGTCACT 59.688 43.478 0.00 0.00 0.00 3.41
23 24 3.064820 ACACCGACAAACATTGAAGTCAC 59.935 43.478 0.00 0.00 0.00 3.67
24 25 3.275143 ACACCGACAAACATTGAAGTCA 58.725 40.909 0.00 0.00 0.00 3.41
25 26 3.963383 ACACCGACAAACATTGAAGTC 57.037 42.857 0.00 0.00 0.00 3.01
26 27 3.442273 ACAACACCGACAAACATTGAAGT 59.558 39.130 0.00 0.00 0.00 3.01
27 28 4.027572 ACAACACCGACAAACATTGAAG 57.972 40.909 0.00 0.00 0.00 3.02
28 29 4.442375 AACAACACCGACAAACATTGAA 57.558 36.364 0.00 0.00 0.00 2.69
29 30 4.442375 AAACAACACCGACAAACATTGA 57.558 36.364 0.00 0.00 0.00 2.57
30 31 4.387256 ACAAAACAACACCGACAAACATTG 59.613 37.500 0.00 0.00 0.00 2.82
31 32 4.561105 ACAAAACAACACCGACAAACATT 58.439 34.783 0.00 0.00 0.00 2.71
32 33 4.181309 ACAAAACAACACCGACAAACAT 57.819 36.364 0.00 0.00 0.00 2.71
33 34 3.644884 ACAAAACAACACCGACAAACA 57.355 38.095 0.00 0.00 0.00 2.83
34 35 5.155643 ACTAACAAAACAACACCGACAAAC 58.844 37.500 0.00 0.00 0.00 2.93
35 36 5.373981 ACTAACAAAACAACACCGACAAA 57.626 34.783 0.00 0.00 0.00 2.83
36 37 5.154932 CAACTAACAAAACAACACCGACAA 58.845 37.500 0.00 0.00 0.00 3.18
37 38 4.379603 CCAACTAACAAAACAACACCGACA 60.380 41.667 0.00 0.00 0.00 4.35
38 39 4.099824 CCAACTAACAAAACAACACCGAC 58.900 43.478 0.00 0.00 0.00 4.79
39 40 4.008330 TCCAACTAACAAAACAACACCGA 58.992 39.130 0.00 0.00 0.00 4.69
40 41 4.347813 CTCCAACTAACAAAACAACACCG 58.652 43.478 0.00 0.00 0.00 4.94
41 42 4.158949 ACCTCCAACTAACAAAACAACACC 59.841 41.667 0.00 0.00 0.00 4.16
42 43 5.124936 AGACCTCCAACTAACAAAACAACAC 59.875 40.000 0.00 0.00 0.00 3.32
43 44 5.124776 CAGACCTCCAACTAACAAAACAACA 59.875 40.000 0.00 0.00 0.00 3.33
44 45 5.355910 TCAGACCTCCAACTAACAAAACAAC 59.644 40.000 0.00 0.00 0.00 3.32
45 46 5.502079 TCAGACCTCCAACTAACAAAACAA 58.498 37.500 0.00 0.00 0.00 2.83
46 47 5.105567 TCAGACCTCCAACTAACAAAACA 57.894 39.130 0.00 0.00 0.00 2.83
47 48 5.503520 CGTTCAGACCTCCAACTAACAAAAC 60.504 44.000 0.00 0.00 0.00 2.43
48 49 4.573201 CGTTCAGACCTCCAACTAACAAAA 59.427 41.667 0.00 0.00 0.00 2.44
49 50 4.124238 CGTTCAGACCTCCAACTAACAAA 58.876 43.478 0.00 0.00 0.00 2.83
50 51 3.385433 TCGTTCAGACCTCCAACTAACAA 59.615 43.478 0.00 0.00 0.00 2.83
51 52 2.960384 TCGTTCAGACCTCCAACTAACA 59.040 45.455 0.00 0.00 0.00 2.41
52 53 3.576648 CTCGTTCAGACCTCCAACTAAC 58.423 50.000 0.00 0.00 0.00 2.34
53 54 2.561419 CCTCGTTCAGACCTCCAACTAA 59.439 50.000 0.00 0.00 0.00 2.24
54 55 2.168496 CCTCGTTCAGACCTCCAACTA 58.832 52.381 0.00 0.00 0.00 2.24
55 56 0.969894 CCTCGTTCAGACCTCCAACT 59.030 55.000 0.00 0.00 0.00 3.16
56 57 0.966920 TCCTCGTTCAGACCTCCAAC 59.033 55.000 0.00 0.00 0.00 3.77
57 58 1.203013 TCTCCTCGTTCAGACCTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
58 59 0.404426 TCTCCTCGTTCAGACCTCCA 59.596 55.000 0.00 0.00 0.00 3.86
59 60 1.679153 GATCTCCTCGTTCAGACCTCC 59.321 57.143 0.00 0.00 0.00 4.30
60 61 2.650322 AGATCTCCTCGTTCAGACCTC 58.350 52.381 0.00 0.00 0.00 3.85
61 62 2.757868 CAAGATCTCCTCGTTCAGACCT 59.242 50.000 0.00 0.00 0.00 3.85
62 63 2.737039 GCAAGATCTCCTCGTTCAGACC 60.737 54.545 0.00 0.00 0.00 3.85
63 64 2.094494 TGCAAGATCTCCTCGTTCAGAC 60.094 50.000 0.00 0.00 0.00 3.51
64 65 2.094494 GTGCAAGATCTCCTCGTTCAGA 60.094 50.000 0.00 0.00 0.00 3.27
65 66 2.266554 GTGCAAGATCTCCTCGTTCAG 58.733 52.381 0.00 0.00 0.00 3.02
66 67 1.066858 GGTGCAAGATCTCCTCGTTCA 60.067 52.381 0.00 0.00 0.00 3.18
67 68 1.205893 AGGTGCAAGATCTCCTCGTTC 59.794 52.381 0.00 0.00 0.00 3.95
68 69 1.205893 GAGGTGCAAGATCTCCTCGTT 59.794 52.381 11.35 0.00 37.11 3.85
69 70 0.820871 GAGGTGCAAGATCTCCTCGT 59.179 55.000 11.35 2.43 37.11 4.18
70 71 1.110442 AGAGGTGCAAGATCTCCTCG 58.890 55.000 17.97 0.96 46.15 4.63
71 72 2.158971 GGAAGAGGTGCAAGATCTCCTC 60.159 54.545 16.86 16.86 43.51 3.71
72 73 1.836802 GGAAGAGGTGCAAGATCTCCT 59.163 52.381 0.00 0.00 33.06 3.69
73 74 1.134250 GGGAAGAGGTGCAAGATCTCC 60.134 57.143 0.00 0.00 0.00 3.71
74 75 1.556911 TGGGAAGAGGTGCAAGATCTC 59.443 52.381 0.00 0.00 0.00 2.75
75 76 1.280421 GTGGGAAGAGGTGCAAGATCT 59.720 52.381 0.00 0.00 0.00 2.75
76 77 1.280421 AGTGGGAAGAGGTGCAAGATC 59.720 52.381 0.00 0.00 0.00 2.75
77 78 1.366319 AGTGGGAAGAGGTGCAAGAT 58.634 50.000 0.00 0.00 0.00 2.40
78 79 1.140312 AAGTGGGAAGAGGTGCAAGA 58.860 50.000 0.00 0.00 0.00 3.02
79 80 1.986882 AAAGTGGGAAGAGGTGCAAG 58.013 50.000 0.00 0.00 0.00 4.01
80 81 2.224769 CCTAAAGTGGGAAGAGGTGCAA 60.225 50.000 0.00 0.00 0.00 4.08
81 82 1.351017 CCTAAAGTGGGAAGAGGTGCA 59.649 52.381 0.00 0.00 0.00 4.57
82 83 1.628846 TCCTAAAGTGGGAAGAGGTGC 59.371 52.381 0.00 0.00 0.00 5.01
83 84 3.777522 AGATCCTAAAGTGGGAAGAGGTG 59.222 47.826 0.00 0.00 36.37 4.00
84 85 4.081695 AGATCCTAAAGTGGGAAGAGGT 57.918 45.455 0.00 0.00 36.37 3.85
85 86 6.556874 AGATAAGATCCTAAAGTGGGAAGAGG 59.443 42.308 0.00 0.00 36.37 3.69
86 87 7.610580 AGATAAGATCCTAAAGTGGGAAGAG 57.389 40.000 0.00 0.00 36.37 2.85
87 88 7.201920 CGAAGATAAGATCCTAAAGTGGGAAGA 60.202 40.741 0.00 0.00 36.37 2.87
88 89 6.926272 CGAAGATAAGATCCTAAAGTGGGAAG 59.074 42.308 0.00 0.00 36.37 3.46
89 90 6.183360 CCGAAGATAAGATCCTAAAGTGGGAA 60.183 42.308 0.00 0.00 36.37 3.97
90 91 5.304614 CCGAAGATAAGATCCTAAAGTGGGA 59.695 44.000 0.00 0.00 37.26 4.37
91 92 5.511545 CCCGAAGATAAGATCCTAAAGTGGG 60.512 48.000 0.00 0.00 0.00 4.61
92 93 5.070580 ACCCGAAGATAAGATCCTAAAGTGG 59.929 44.000 0.00 0.00 0.00 4.00
93 94 5.986135 CACCCGAAGATAAGATCCTAAAGTG 59.014 44.000 0.00 0.00 0.00 3.16
94 95 5.897824 TCACCCGAAGATAAGATCCTAAAGT 59.102 40.000 0.00 0.00 0.00 2.66
95 96 6.406692 TCACCCGAAGATAAGATCCTAAAG 57.593 41.667 0.00 0.00 0.00 1.85
96 97 6.801718 TTCACCCGAAGATAAGATCCTAAA 57.198 37.500 0.00 0.00 0.00 1.85
97 98 6.801718 TTTCACCCGAAGATAAGATCCTAA 57.198 37.500 0.00 0.00 31.28 2.69
98 99 6.407752 GGTTTTCACCCGAAGATAAGATCCTA 60.408 42.308 0.00 0.00 37.03 2.94
99 100 5.429130 GTTTTCACCCGAAGATAAGATCCT 58.571 41.667 0.00 0.00 31.28 3.24
100 101 4.575236 GGTTTTCACCCGAAGATAAGATCC 59.425 45.833 0.00 0.00 37.03 3.36
101 102 5.064834 GTGGTTTTCACCCGAAGATAAGATC 59.935 44.000 0.00 0.00 43.49 2.75
102 103 4.941873 GTGGTTTTCACCCGAAGATAAGAT 59.058 41.667 0.00 0.00 43.49 2.40
103 104 4.320870 GTGGTTTTCACCCGAAGATAAGA 58.679 43.478 0.00 0.00 43.49 2.10
104 105 3.124636 CGTGGTTTTCACCCGAAGATAAG 59.875 47.826 0.00 0.00 43.49 1.73
105 106 3.068560 CGTGGTTTTCACCCGAAGATAA 58.931 45.455 0.00 0.00 43.49 1.75
106 107 2.299582 TCGTGGTTTTCACCCGAAGATA 59.700 45.455 3.43 0.00 43.49 1.98
107 108 1.071071 TCGTGGTTTTCACCCGAAGAT 59.929 47.619 3.43 0.00 43.49 2.40
108 109 0.464870 TCGTGGTTTTCACCCGAAGA 59.535 50.000 3.43 0.00 43.49 2.87
109 110 0.584876 GTCGTGGTTTTCACCCGAAG 59.415 55.000 6.56 0.00 43.25 3.79
110 111 0.107800 TGTCGTGGTTTTCACCCGAA 60.108 50.000 6.56 0.00 43.25 4.30
111 112 0.107081 ATGTCGTGGTTTTCACCCGA 59.893 50.000 0.00 2.13 43.49 5.14
112 113 0.237235 CATGTCGTGGTTTTCACCCG 59.763 55.000 0.00 0.00 43.49 5.28
113 114 0.596082 CCATGTCGTGGTTTTCACCC 59.404 55.000 2.56 0.00 43.49 4.61
126 127 0.947244 CTAATCCGGCAAGCCATGTC 59.053 55.000 12.19 0.00 35.37 3.06
127 128 0.255890 ACTAATCCGGCAAGCCATGT 59.744 50.000 12.19 0.00 35.37 3.21
128 129 0.664761 CACTAATCCGGCAAGCCATG 59.335 55.000 12.19 1.50 35.37 3.66
129 130 0.546122 TCACTAATCCGGCAAGCCAT 59.454 50.000 12.19 0.00 35.37 4.40
130 131 0.546122 ATCACTAATCCGGCAAGCCA 59.454 50.000 12.19 0.00 35.37 4.75
131 132 0.947244 CATCACTAATCCGGCAAGCC 59.053 55.000 0.00 0.00 0.00 4.35
132 133 1.331756 CACATCACTAATCCGGCAAGC 59.668 52.381 0.00 0.00 0.00 4.01
133 134 1.942657 CCACATCACTAATCCGGCAAG 59.057 52.381 0.00 0.00 0.00 4.01
134 135 1.280710 ACCACATCACTAATCCGGCAA 59.719 47.619 0.00 0.00 0.00 4.52
135 136 0.908910 ACCACATCACTAATCCGGCA 59.091 50.000 0.00 0.00 0.00 5.69
136 137 1.299541 CACCACATCACTAATCCGGC 58.700 55.000 0.00 0.00 0.00 6.13
137 138 2.550978 GACACCACATCACTAATCCGG 58.449 52.381 0.00 0.00 0.00 5.14
138 139 2.550978 GGACACCACATCACTAATCCG 58.449 52.381 0.00 0.00 0.00 4.18
139 140 2.505819 AGGGACACCACATCACTAATCC 59.494 50.000 0.00 0.00 40.13 3.01
140 141 3.738281 CGAGGGACACCACATCACTAATC 60.738 52.174 0.00 0.00 40.13 1.75
141 142 2.168521 CGAGGGACACCACATCACTAAT 59.831 50.000 0.00 0.00 40.13 1.73
142 143 1.548719 CGAGGGACACCACATCACTAA 59.451 52.381 0.00 0.00 40.13 2.24
143 144 1.182667 CGAGGGACACCACATCACTA 58.817 55.000 0.00 0.00 40.13 2.74
144 145 1.975327 CGAGGGACACCACATCACT 59.025 57.895 0.00 0.00 40.13 3.41
145 146 1.741770 GCGAGGGACACCACATCAC 60.742 63.158 0.00 0.00 40.13 3.06
146 147 2.662596 GCGAGGGACACCACATCA 59.337 61.111 0.00 0.00 40.13 3.07
147 148 2.509336 CGCGAGGGACACCACATC 60.509 66.667 0.00 0.00 40.13 3.06
148 149 2.879233 AACGCGAGGGACACCACAT 61.879 57.895 15.93 0.00 40.13 3.21
149 150 3.542676 AACGCGAGGGACACCACA 61.543 61.111 15.93 0.00 40.13 4.17
150 151 3.041940 CAACGCGAGGGACACCAC 61.042 66.667 15.93 0.00 40.13 4.16
151 152 1.746322 TAACAACGCGAGGGACACCA 61.746 55.000 15.93 0.00 40.13 4.17
152 153 0.390735 ATAACAACGCGAGGGACACC 60.391 55.000 15.93 0.00 0.00 4.16
153 154 1.435577 AATAACAACGCGAGGGACAC 58.564 50.000 15.93 0.00 0.00 3.67
154 155 2.172851 AAATAACAACGCGAGGGACA 57.827 45.000 15.93 0.00 0.00 4.02
155 156 4.870221 ATTAAATAACAACGCGAGGGAC 57.130 40.909 15.93 0.00 0.00 4.46
156 157 4.095185 CCAATTAAATAACAACGCGAGGGA 59.905 41.667 15.93 0.00 0.00 4.20
157 158 4.095185 TCCAATTAAATAACAACGCGAGGG 59.905 41.667 15.93 3.63 0.00 4.30
158 159 5.224562 TCCAATTAAATAACAACGCGAGG 57.775 39.130 15.93 6.68 0.00 4.63
159 160 5.227184 GCTTCCAATTAAATAACAACGCGAG 59.773 40.000 15.93 7.57 0.00 5.03
160 161 5.090083 GCTTCCAATTAAATAACAACGCGA 58.910 37.500 15.93 0.00 0.00 5.87
161 162 4.854291 TGCTTCCAATTAAATAACAACGCG 59.146 37.500 3.53 3.53 0.00 6.01
162 163 6.529829 TCATGCTTCCAATTAAATAACAACGC 59.470 34.615 0.00 0.00 0.00 4.84
163 164 8.633075 ATCATGCTTCCAATTAAATAACAACG 57.367 30.769 0.00 0.00 0.00 4.10
168 169 8.891720 GCCAAAATCATGCTTCCAATTAAATAA 58.108 29.630 0.00 0.00 0.00 1.40
169 170 8.045507 TGCCAAAATCATGCTTCCAATTAAATA 58.954 29.630 0.00 0.00 0.00 1.40
170 171 6.885376 TGCCAAAATCATGCTTCCAATTAAAT 59.115 30.769 0.00 0.00 0.00 1.40
171 172 6.236409 TGCCAAAATCATGCTTCCAATTAAA 58.764 32.000 0.00 0.00 0.00 1.52
172 173 5.802465 TGCCAAAATCATGCTTCCAATTAA 58.198 33.333 0.00 0.00 0.00 1.40
173 174 5.417754 TGCCAAAATCATGCTTCCAATTA 57.582 34.783 0.00 0.00 0.00 1.40
174 175 4.289238 TGCCAAAATCATGCTTCCAATT 57.711 36.364 0.00 0.00 0.00 2.32
175 176 3.985019 TGCCAAAATCATGCTTCCAAT 57.015 38.095 0.00 0.00 0.00 3.16
176 177 3.181457 TGTTGCCAAAATCATGCTTCCAA 60.181 39.130 0.00 0.00 0.00 3.53
177 178 2.367894 TGTTGCCAAAATCATGCTTCCA 59.632 40.909 0.00 0.00 0.00 3.53
178 179 3.042871 TGTTGCCAAAATCATGCTTCC 57.957 42.857 0.00 0.00 0.00 3.46
179 180 6.913873 ATTATGTTGCCAAAATCATGCTTC 57.086 33.333 0.00 0.00 0.00 3.86
180 181 8.967664 AATATTATGTTGCCAAAATCATGCTT 57.032 26.923 0.00 0.00 0.00 3.91
181 182 8.832521 CAAATATTATGTTGCCAAAATCATGCT 58.167 29.630 0.00 0.00 0.00 3.79
182 183 8.071368 CCAAATATTATGTTGCCAAAATCATGC 58.929 33.333 0.00 0.00 0.00 4.06
183 184 9.111613 ACCAAATATTATGTTGCCAAAATCATG 57.888 29.630 0.00 0.00 0.00 3.07
184 185 9.683870 AACCAAATATTATGTTGCCAAAATCAT 57.316 25.926 2.63 0.00 0.00 2.45
188 189 9.868277 CTCTAACCAAATATTATGTTGCCAAAA 57.132 29.630 11.02 0.00 0.00 2.44
189 190 7.978975 GCTCTAACCAAATATTATGTTGCCAAA 59.021 33.333 11.02 0.00 0.00 3.28
190 191 7.123397 TGCTCTAACCAAATATTATGTTGCCAA 59.877 33.333 11.02 0.00 0.00 4.52
191 192 6.605194 TGCTCTAACCAAATATTATGTTGCCA 59.395 34.615 11.02 3.14 0.00 4.92
192 193 6.918022 GTGCTCTAACCAAATATTATGTTGCC 59.082 38.462 11.02 1.30 0.00 4.52
193 194 6.918022 GGTGCTCTAACCAAATATTATGTTGC 59.082 38.462 11.02 7.74 40.22 4.17
194 195 8.131100 CAGGTGCTCTAACCAAATATTATGTTG 58.869 37.037 11.02 0.00 43.20 3.33
195 196 7.285401 CCAGGTGCTCTAACCAAATATTATGTT 59.715 37.037 7.45 7.45 43.20 2.71
196 197 6.772716 CCAGGTGCTCTAACCAAATATTATGT 59.227 38.462 0.00 0.00 43.20 2.29
197 198 6.294176 GCCAGGTGCTCTAACCAAATATTATG 60.294 42.308 0.00 0.00 43.20 1.90
198 199 5.770162 GCCAGGTGCTCTAACCAAATATTAT 59.230 40.000 0.00 0.00 43.20 1.28
199 200 5.130350 GCCAGGTGCTCTAACCAAATATTA 58.870 41.667 0.00 0.00 43.20 0.98
200 201 3.954258 GCCAGGTGCTCTAACCAAATATT 59.046 43.478 0.00 0.00 43.20 1.28
201 202 3.555966 GCCAGGTGCTCTAACCAAATAT 58.444 45.455 0.00 0.00 43.20 1.28
202 203 2.999331 GCCAGGTGCTCTAACCAAATA 58.001 47.619 0.00 0.00 43.20 1.40
203 204 1.839424 GCCAGGTGCTCTAACCAAAT 58.161 50.000 0.00 0.00 43.20 2.32
204 205 3.339547 GCCAGGTGCTCTAACCAAA 57.660 52.632 0.00 0.00 43.20 3.28
214 215 2.203337 TGACCACAAGCCAGGTGC 60.203 61.111 0.00 0.00 38.50 5.01
215 216 1.601759 CCTGACCACAAGCCAGGTG 60.602 63.158 0.00 0.00 41.81 4.00
216 217 2.833913 CCCTGACCACAAGCCAGGT 61.834 63.158 0.00 0.00 44.46 4.00
217 218 2.034687 CCCTGACCACAAGCCAGG 59.965 66.667 0.00 0.00 45.28 4.45
218 219 2.674380 GCCCTGACCACAAGCCAG 60.674 66.667 0.00 0.00 0.00 4.85
219 220 2.370459 AATGCCCTGACCACAAGCCA 62.370 55.000 0.00 0.00 0.00 4.75
220 221 1.607467 AATGCCCTGACCACAAGCC 60.607 57.895 0.00 0.00 0.00 4.35
221 222 1.588082 CAATGCCCTGACCACAAGC 59.412 57.895 0.00 0.00 0.00 4.01
222 223 1.880819 GCCAATGCCCTGACCACAAG 61.881 60.000 0.00 0.00 0.00 3.16
223 224 1.907807 GCCAATGCCCTGACCACAA 60.908 57.895 0.00 0.00 0.00 3.33
224 225 2.283101 GCCAATGCCCTGACCACA 60.283 61.111 0.00 0.00 0.00 4.17
225 226 2.036256 AGCCAATGCCCTGACCAC 59.964 61.111 0.00 0.00 38.69 4.16
226 227 2.036098 CAGCCAATGCCCTGACCA 59.964 61.111 0.00 0.00 38.69 4.02
227 228 1.751927 CTCAGCCAATGCCCTGACC 60.752 63.158 0.00 0.00 38.69 4.02
228 229 0.322816 TTCTCAGCCAATGCCCTGAC 60.323 55.000 0.00 0.00 38.69 3.51
229 230 0.627451 ATTCTCAGCCAATGCCCTGA 59.373 50.000 2.72 2.72 38.69 3.86
230 231 1.030457 GATTCTCAGCCAATGCCCTG 58.970 55.000 0.00 0.00 38.69 4.45
231 232 0.465097 CGATTCTCAGCCAATGCCCT 60.465 55.000 0.00 0.00 38.69 5.19
232 233 0.464373 TCGATTCTCAGCCAATGCCC 60.464 55.000 0.00 0.00 38.69 5.36
233 234 1.266175 CATCGATTCTCAGCCAATGCC 59.734 52.381 0.00 0.00 38.69 4.40
234 235 1.266175 CCATCGATTCTCAGCCAATGC 59.734 52.381 0.00 0.00 37.95 3.56
235 236 2.569059 ACCATCGATTCTCAGCCAATG 58.431 47.619 0.00 0.00 0.00 2.82
236 237 2.947652 CAACCATCGATTCTCAGCCAAT 59.052 45.455 0.00 0.00 0.00 3.16
237 238 2.290260 ACAACCATCGATTCTCAGCCAA 60.290 45.455 0.00 0.00 0.00 4.52
238 239 1.278985 ACAACCATCGATTCTCAGCCA 59.721 47.619 0.00 0.00 0.00 4.75
239 240 2.029838 ACAACCATCGATTCTCAGCC 57.970 50.000 0.00 0.00 0.00 4.85
240 241 4.371786 TGATACAACCATCGATTCTCAGC 58.628 43.478 0.00 0.00 0.00 4.26
241 242 7.869937 ACTAATGATACAACCATCGATTCTCAG 59.130 37.037 0.00 0.00 0.00 3.35
242 243 7.653311 CACTAATGATACAACCATCGATTCTCA 59.347 37.037 0.00 0.00 0.00 3.27
243 244 7.653713 ACACTAATGATACAACCATCGATTCTC 59.346 37.037 0.00 0.00 0.00 2.87
244 245 7.439356 CACACTAATGATACAACCATCGATTCT 59.561 37.037 0.00 0.00 0.00 2.40
245 246 7.224753 ACACACTAATGATACAACCATCGATTC 59.775 37.037 0.00 0.00 0.00 2.52
246 247 7.047891 ACACACTAATGATACAACCATCGATT 58.952 34.615 0.00 0.00 0.00 3.34
247 248 6.582636 ACACACTAATGATACAACCATCGAT 58.417 36.000 0.00 0.00 0.00 3.59
248 249 5.972935 ACACACTAATGATACAACCATCGA 58.027 37.500 0.00 0.00 0.00 3.59
249 250 6.092122 ACAACACACTAATGATACAACCATCG 59.908 38.462 0.00 0.00 0.00 3.84
250 251 7.243487 CACAACACACTAATGATACAACCATC 58.757 38.462 0.00 0.00 0.00 3.51
251 252 6.349280 GCACAACACACTAATGATACAACCAT 60.349 38.462 0.00 0.00 0.00 3.55
252 253 5.049060 GCACAACACACTAATGATACAACCA 60.049 40.000 0.00 0.00 0.00 3.67
253 254 5.390613 GCACAACACACTAATGATACAACC 58.609 41.667 0.00 0.00 0.00 3.77
254 255 5.181245 AGGCACAACACACTAATGATACAAC 59.819 40.000 0.00 0.00 0.00 3.32
255 256 5.181056 CAGGCACAACACACTAATGATACAA 59.819 40.000 0.00 0.00 0.00 2.41
256 257 4.694982 CAGGCACAACACACTAATGATACA 59.305 41.667 0.00 0.00 0.00 2.29
257 258 4.437390 GCAGGCACAACACACTAATGATAC 60.437 45.833 0.00 0.00 0.00 2.24
258 259 3.689161 GCAGGCACAACACACTAATGATA 59.311 43.478 0.00 0.00 0.00 2.15
259 260 2.489329 GCAGGCACAACACACTAATGAT 59.511 45.455 0.00 0.00 0.00 2.45
260 261 1.879380 GCAGGCACAACACACTAATGA 59.121 47.619 0.00 0.00 0.00 2.57
261 262 1.400113 CGCAGGCACAACACACTAATG 60.400 52.381 0.00 0.00 0.00 1.90
262 263 0.874390 CGCAGGCACAACACACTAAT 59.126 50.000 0.00 0.00 0.00 1.73
263 264 0.179070 TCGCAGGCACAACACACTAA 60.179 50.000 0.00 0.00 0.00 2.24
264 265 0.599991 CTCGCAGGCACAACACACTA 60.600 55.000 0.00 0.00 0.00 2.74
265 266 1.889105 CTCGCAGGCACAACACACT 60.889 57.895 0.00 0.00 0.00 3.55
266 267 2.633657 CTCGCAGGCACAACACAC 59.366 61.111 0.00 0.00 0.00 3.82
267 268 2.591429 CCTCGCAGGCACAACACA 60.591 61.111 0.00 0.00 0.00 3.72
268 269 2.186826 AACCTCGCAGGCACAACAC 61.187 57.895 2.50 0.00 39.63 3.32
269 270 2.186160 CAACCTCGCAGGCACAACA 61.186 57.895 2.50 0.00 39.63 3.33
270 271 2.639286 CAACCTCGCAGGCACAAC 59.361 61.111 2.50 0.00 39.63 3.32
271 272 3.286751 GCAACCTCGCAGGCACAA 61.287 61.111 2.50 0.00 39.63 3.33
272 273 4.560743 TGCAACCTCGCAGGCACA 62.561 61.111 2.50 0.00 39.63 4.57
273 274 2.348605 TTTTGCAACCTCGCAGGCAC 62.349 55.000 0.00 0.00 44.14 5.01
274 275 2.074230 CTTTTGCAACCTCGCAGGCA 62.074 55.000 0.00 0.00 44.14 4.75
275 276 1.372128 CTTTTGCAACCTCGCAGGC 60.372 57.895 0.00 0.00 44.14 4.85
276 277 0.385390 AACTTTTGCAACCTCGCAGG 59.615 50.000 0.00 1.16 44.14 4.85
277 278 2.119457 GAAACTTTTGCAACCTCGCAG 58.881 47.619 0.00 0.00 44.14 5.18
278 279 1.532921 CGAAACTTTTGCAACCTCGCA 60.533 47.619 0.00 0.00 41.03 5.10
279 280 1.120437 CGAAACTTTTGCAACCTCGC 58.880 50.000 0.00 0.00 0.00 5.03
280 281 2.468532 ACGAAACTTTTGCAACCTCG 57.531 45.000 0.00 5.98 0.00 4.63
281 282 3.546271 GTCAACGAAACTTTTGCAACCTC 59.454 43.478 0.00 0.00 0.00 3.85
282 283 3.057174 TGTCAACGAAACTTTTGCAACCT 60.057 39.130 0.00 0.00 0.00 3.50
283 284 3.246619 TGTCAACGAAACTTTTGCAACC 58.753 40.909 0.00 0.00 0.00 3.77
284 285 4.326009 ACATGTCAACGAAACTTTTGCAAC 59.674 37.500 0.00 0.00 0.00 4.17
285 286 4.325741 CACATGTCAACGAAACTTTTGCAA 59.674 37.500 0.00 0.00 0.00 4.08
286 287 3.856521 CACATGTCAACGAAACTTTTGCA 59.143 39.130 0.00 0.00 0.00 4.08
287 288 3.242712 CCACATGTCAACGAAACTTTTGC 59.757 43.478 0.00 0.00 0.00 3.68
288 289 4.420168 ACCACATGTCAACGAAACTTTTG 58.580 39.130 0.00 0.00 0.00 2.44
289 290 4.712122 ACCACATGTCAACGAAACTTTT 57.288 36.364 0.00 0.00 0.00 2.27
290 291 5.821516 TTACCACATGTCAACGAAACTTT 57.178 34.783 0.00 0.00 0.00 2.66
291 292 5.821516 TTTACCACATGTCAACGAAACTT 57.178 34.783 0.00 0.00 0.00 2.66
292 293 5.355910 AGTTTTACCACATGTCAACGAAACT 59.644 36.000 13.72 13.72 31.96 2.66
293 294 5.575019 AGTTTTACCACATGTCAACGAAAC 58.425 37.500 0.00 4.51 0.00 2.78
294 295 5.821516 AGTTTTACCACATGTCAACGAAA 57.178 34.783 0.00 0.00 0.00 3.46
295 296 6.050432 ACTAGTTTTACCACATGTCAACGAA 58.950 36.000 0.00 0.00 0.00 3.85
296 297 5.603596 ACTAGTTTTACCACATGTCAACGA 58.396 37.500 0.00 0.00 0.00 3.85
297 298 5.917541 ACTAGTTTTACCACATGTCAACG 57.082 39.130 0.00 0.00 0.00 4.10
298 299 6.261381 TCCAACTAGTTTTACCACATGTCAAC 59.739 38.462 5.07 0.00 0.00 3.18
299 300 6.261381 GTCCAACTAGTTTTACCACATGTCAA 59.739 38.462 5.07 0.00 0.00 3.18
300 301 5.761234 GTCCAACTAGTTTTACCACATGTCA 59.239 40.000 5.07 0.00 0.00 3.58
301 302 5.107220 CGTCCAACTAGTTTTACCACATGTC 60.107 44.000 5.07 0.00 0.00 3.06
302 303 4.753107 CGTCCAACTAGTTTTACCACATGT 59.247 41.667 5.07 0.00 0.00 3.21
303 304 4.753107 ACGTCCAACTAGTTTTACCACATG 59.247 41.667 5.07 0.00 0.00 3.21
304 305 4.964593 ACGTCCAACTAGTTTTACCACAT 58.035 39.130 5.07 0.00 0.00 3.21
305 306 4.405116 ACGTCCAACTAGTTTTACCACA 57.595 40.909 5.07 0.00 0.00 4.17
306 307 4.810491 TCAACGTCCAACTAGTTTTACCAC 59.190 41.667 5.07 0.00 0.00 4.16
307 308 4.810491 GTCAACGTCCAACTAGTTTTACCA 59.190 41.667 5.07 0.00 0.00 3.25
308 309 5.052481 AGTCAACGTCCAACTAGTTTTACC 58.948 41.667 5.07 0.00 0.00 2.85
309 310 6.594284 AAGTCAACGTCCAACTAGTTTTAC 57.406 37.500 5.07 6.23 0.00 2.01
310 311 6.594937 ACAAAGTCAACGTCCAACTAGTTTTA 59.405 34.615 5.07 0.00 0.00 1.52
311 312 5.413523 ACAAAGTCAACGTCCAACTAGTTTT 59.586 36.000 5.07 0.00 0.00 2.43
312 313 4.939439 ACAAAGTCAACGTCCAACTAGTTT 59.061 37.500 5.07 0.00 0.00 2.66
313 314 4.510571 ACAAAGTCAACGTCCAACTAGTT 58.489 39.130 1.12 1.12 0.00 2.24
314 315 4.133013 ACAAAGTCAACGTCCAACTAGT 57.867 40.909 0.00 0.00 0.00 2.57
315 316 4.260620 CCAACAAAGTCAACGTCCAACTAG 60.261 45.833 0.00 0.00 0.00 2.57
316 317 3.623960 CCAACAAAGTCAACGTCCAACTA 59.376 43.478 0.00 0.00 0.00 2.24
317 318 2.422127 CCAACAAAGTCAACGTCCAACT 59.578 45.455 0.00 0.00 0.00 3.16
318 319 2.420722 TCCAACAAAGTCAACGTCCAAC 59.579 45.455 0.00 0.00 0.00 3.77
319 320 2.712709 TCCAACAAAGTCAACGTCCAA 58.287 42.857 0.00 0.00 0.00 3.53
320 321 2.404923 TCCAACAAAGTCAACGTCCA 57.595 45.000 0.00 0.00 0.00 4.02
321 322 3.982576 ATTCCAACAAAGTCAACGTCC 57.017 42.857 0.00 0.00 0.00 4.79
322 323 5.500131 GCAAAATTCCAACAAAGTCAACGTC 60.500 40.000 0.00 0.00 0.00 4.34
323 324 4.328712 GCAAAATTCCAACAAAGTCAACGT 59.671 37.500 0.00 0.00 0.00 3.99
324 325 4.566360 AGCAAAATTCCAACAAAGTCAACG 59.434 37.500 0.00 0.00 0.00 4.10
325 326 6.756542 ACTAGCAAAATTCCAACAAAGTCAAC 59.243 34.615 0.00 0.00 0.00 3.18
326 327 6.872920 ACTAGCAAAATTCCAACAAAGTCAA 58.127 32.000 0.00 0.00 0.00 3.18
327 328 6.463995 ACTAGCAAAATTCCAACAAAGTCA 57.536 33.333 0.00 0.00 0.00 3.41
328 329 7.084486 CCTACTAGCAAAATTCCAACAAAGTC 58.916 38.462 0.00 0.00 0.00 3.01
329 330 6.516693 GCCTACTAGCAAAATTCCAACAAAGT 60.517 38.462 0.00 0.00 0.00 2.66
330 331 5.863935 GCCTACTAGCAAAATTCCAACAAAG 59.136 40.000 0.00 0.00 0.00 2.77
331 332 5.279256 GGCCTACTAGCAAAATTCCAACAAA 60.279 40.000 0.00 0.00 0.00 2.83
416 417 1.267121 TTAGCCTCACTCACTCCACC 58.733 55.000 0.00 0.00 0.00 4.61
592 648 1.537638 CGTGCATAGCTCTATCCTCGT 59.462 52.381 0.00 0.00 0.00 4.18
752 827 1.476471 GCTAGGGTAGACGTCTGCCTA 60.476 57.143 39.82 29.68 46.34 3.93
954 1055 1.203994 TCGGGGAAGAAGTCATCGTTC 59.796 52.381 0.00 0.00 0.00 3.95
999 1131 1.009903 CGTTGACGTTGTCGCCCATA 61.010 55.000 0.00 0.00 41.18 2.74
1068 1200 5.598416 ACATGAATTCTACCACGATCTCA 57.402 39.130 7.05 0.00 0.00 3.27
1118 1250 4.281941 TGCGAACTAGGATAGCAGATGAAT 59.718 41.667 0.00 0.00 44.39 2.57
1131 1263 8.594881 AGATTAAACTAATCATGCGAACTAGG 57.405 34.615 8.66 0.00 45.41 3.02
1310 1443 5.453339 GCTCTTGTGTGCCACCTCTTATATA 60.453 44.000 0.00 0.00 32.73 0.86
1536 1669 0.250338 AGTCCGAGGCACCAAACTTC 60.250 55.000 0.00 0.00 0.00 3.01
1567 1700 6.932960 TCATAGAATTGCTCCATGACATACAG 59.067 38.462 0.00 0.00 0.00 2.74
1601 1734 2.584418 CAGGGCGCTCATCAGTCG 60.584 66.667 11.40 0.00 0.00 4.18
1644 1777 2.143122 TCAAGTTCTTTTGCGAGCGAT 58.857 42.857 0.00 0.00 0.00 4.58
1993 2128 4.027782 AGTCCCTTCCCCTTCTTATGAT 57.972 45.455 0.00 0.00 0.00 2.45
2057 2192 0.744771 GCTCCTCAAAGCGGTTAGGG 60.745 60.000 14.56 10.53 31.56 3.53
2135 2270 7.138054 AGGAAAAATATCGTACCCTGATTCT 57.862 36.000 0.00 0.00 0.00 2.40
2186 2321 3.756434 CACCGGTGTCAATTAACCAATCT 59.244 43.478 26.95 0.00 36.14 2.40
2255 2390 1.456287 GGGTGAAGTCCCTGTTGCT 59.544 57.895 0.00 0.00 43.85 3.91
2351 2486 4.696877 TGATGAACATTCTTCAGACGCAAT 59.303 37.500 6.19 0.00 36.72 3.56
2352 2487 4.064388 TGATGAACATTCTTCAGACGCAA 58.936 39.130 6.19 0.00 36.72 4.85
2406 2544 3.430374 CCATCTCGACATAAACGGGAACT 60.430 47.826 0.00 0.00 43.36 3.01
2612 2751 1.007964 CCGCGTCATGCAACCAAAA 60.008 52.632 4.92 0.00 46.97 2.44
2800 2939 7.944554 TCATGAAGTATCTCTTTCCACCTTTTT 59.055 33.333 0.00 0.00 36.40 1.94
2949 3088 1.672854 CCACGATCGGACCTAAGCCA 61.673 60.000 20.98 0.00 0.00 4.75
3032 3171 0.755686 GAGGTGAGTAGGGAGGCATG 59.244 60.000 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.