Multiple sequence alignment - TraesCS3D01G147200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G147200 chr3D 100.000 6683 0 0 1 6683 111924039 111930721 0.000000e+00 12342.0
1 TraesCS3D01G147200 chr3D 89.655 725 25 20 6008 6683 54377675 54376952 0.000000e+00 878.0
2 TraesCS3D01G147200 chr3D 86.364 726 44 19 6008 6683 439815005 439814285 0.000000e+00 741.0
3 TraesCS3D01G147200 chr3D 80.431 557 83 13 1105 1636 111899135 111899690 1.040000e-107 401.0
4 TraesCS3D01G147200 chr3B 88.051 2201 225 30 2130 4317 162630203 162632378 0.000000e+00 2573.0
5 TraesCS3D01G147200 chr3B 90.168 1607 144 9 4404 6006 162632579 162634175 0.000000e+00 2080.0
6 TraesCS3D01G147200 chr3B 93.890 1293 58 9 744 2016 162622588 162623879 0.000000e+00 1930.0
7 TraesCS3D01G147200 chr3B 82.779 691 97 9 1 675 787423827 787424511 1.240000e-166 597.0
8 TraesCS3D01G147200 chr3B 77.810 694 105 22 1089 1753 162521424 162522097 3.780000e-102 383.0
9 TraesCS3D01G147200 chr3B 84.615 299 36 2 1 290 364537765 364538062 8.480000e-74 289.0
10 TraesCS3D01G147200 chr3A 79.592 2891 405 104 3050 5905 118566182 118563442 0.000000e+00 1899.0
11 TraesCS3D01G147200 chr3A 89.061 1225 75 23 797 1985 118572436 118571235 0.000000e+00 1465.0
12 TraesCS3D01G147200 chr3A 87.853 708 49 19 6008 6683 528533401 528534103 0.000000e+00 797.0
13 TraesCS3D01G147200 chr3A 77.886 719 115 19 1105 1796 118588296 118587595 2.240000e-109 407.0
14 TraesCS3D01G147200 chr3A 88.448 277 16 11 6419 6683 534043404 534043132 3.010000e-83 320.0
15 TraesCS3D01G147200 chr3A 80.676 207 27 10 6475 6678 63734930 63735126 1.500000e-31 148.0
16 TraesCS3D01G147200 chr7D 91.061 716 24 5 6008 6683 252055517 252056232 0.000000e+00 931.0
17 TraesCS3D01G147200 chr7D 80.256 704 84 29 1 679 78759833 78760506 4.690000e-131 479.0
18 TraesCS3D01G147200 chr5D 90.973 709 25 9 6008 6680 424889664 424890369 0.000000e+00 918.0
19 TraesCS3D01G147200 chr5D 84.263 699 82 16 1 683 383591690 383592376 0.000000e+00 656.0
20 TraesCS3D01G147200 chr5D 87.556 225 27 1 1360 1584 520114518 520114741 6.650000e-65 259.0
21 TraesCS3D01G147200 chr5D 85.000 260 30 5 1 260 450784567 450784317 8.600000e-64 255.0
22 TraesCS3D01G147200 chr6D 90.730 712 29 6 6009 6683 315966505 315965794 0.000000e+00 915.0
23 TraesCS3D01G147200 chr6D 89.377 706 38 12 6008 6683 315961045 315960347 0.000000e+00 854.0
24 TraesCS3D01G147200 chr6D 86.026 229 26 3 1 229 356288366 356288144 2.410000e-59 241.0
25 TraesCS3D01G147200 chr6A 89.779 724 24 19 6009 6683 11867559 11866837 0.000000e+00 881.0
26 TraesCS3D01G147200 chr6A 84.023 701 80 17 1 685 441810834 441811518 0.000000e+00 645.0
27 TraesCS3D01G147200 chr6A 79.502 683 116 19 1 671 511036572 511035902 1.310000e-126 464.0
28 TraesCS3D01G147200 chr6A 84.783 230 26 5 3 229 498956238 498956015 8.720000e-54 222.0
29 TraesCS3D01G147200 chr2B 89.875 721 23 20 6008 6683 665856115 665856830 0.000000e+00 881.0
30 TraesCS3D01G147200 chr2B 80.326 737 91 23 1 686 161991477 161992210 5.980000e-140 508.0
31 TraesCS3D01G147200 chr2B 82.283 508 70 13 188 677 484639440 484639945 8.010000e-114 422.0
32 TraesCS3D01G147200 chr4A 89.152 719 35 16 6008 6683 72909852 72910570 0.000000e+00 856.0
33 TraesCS3D01G147200 chr4A 88.674 724 34 16 6008 6683 72915330 72916053 0.000000e+00 839.0
34 TraesCS3D01G147200 chr4A 79.008 262 44 8 280 534 71161645 71161902 1.150000e-37 169.0
35 TraesCS3D01G147200 chrUn 89.316 702 41 8 6009 6683 47747225 47746531 0.000000e+00 850.0
36 TraesCS3D01G147200 chr2A 88.567 726 32 19 6009 6683 591656737 591656012 0.000000e+00 833.0
37 TraesCS3D01G147200 chr1A 88.640 713 31 12 6008 6683 577775046 577775745 0.000000e+00 822.0
38 TraesCS3D01G147200 chr1A 87.904 711 50 12 6009 6683 323624315 323625025 0.000000e+00 804.0
39 TraesCS3D01G147200 chr1A 91.690 361 17 1 6008 6355 438338986 438339346 7.790000e-134 488.0
40 TraesCS3D01G147200 chr1A 89.706 204 5 6 6492 6683 554220769 554220968 5.180000e-61 246.0
41 TraesCS3D01G147200 chr1A 85.990 207 29 0 1 207 450090570 450090364 8.720000e-54 222.0
42 TraesCS3D01G147200 chr1A 80.545 257 43 6 13 263 119763069 119762814 2.460000e-44 191.0
43 TraesCS3D01G147200 chr5B 88.745 693 30 17 6008 6653 412436411 412435720 0.000000e+00 804.0
44 TraesCS3D01G147200 chr5B 83.099 639 89 7 1 625 588388026 588388659 1.260000e-156 564.0
45 TraesCS3D01G147200 chr5B 82.862 601 73 13 104 678 533543272 533542676 4.620000e-141 512.0
46 TraesCS3D01G147200 chr5B 79.507 649 90 30 1 642 65290283 65290895 8.010000e-114 422.0
47 TraesCS3D01G147200 chr5B 86.383 235 31 1 1360 1594 655121909 655122142 8.600000e-64 255.0
48 TraesCS3D01G147200 chr7A 88.051 703 48 14 6008 6683 484713617 484714310 0.000000e+00 800.0
49 TraesCS3D01G147200 chr7A 88.889 396 30 3 6300 6681 712556358 712556753 6.060000e-130 475.0
50 TraesCS3D01G147200 chr7A 83.654 104 13 4 2466 2567 544601639 544601538 1.980000e-15 95.3
51 TraesCS3D01G147200 chr1B 88.160 701 40 15 6009 6683 622607920 622607237 0.000000e+00 795.0
52 TraesCS3D01G147200 chr1B 80.817 563 86 16 1 556 544737416 544737963 8.010000e-114 422.0
53 TraesCS3D01G147200 chr5A 87.744 718 38 20 6009 6683 88571881 88572591 0.000000e+00 793.0
54 TraesCS3D01G147200 chr5A 79.944 713 104 14 1 679 479912616 479911909 7.790000e-134 488.0
55 TraesCS3D01G147200 chr5A 86.667 225 29 1 1360 1584 647168492 647168715 1.440000e-61 248.0
56 TraesCS3D01G147200 chr7B 85.484 682 88 5 1 678 736025466 736026140 0.000000e+00 701.0
57 TraesCS3D01G147200 chr7B 84.056 715 65 23 6010 6680 382586778 382587487 1.570000e-180 643.0
58 TraesCS3D01G147200 chr7B 79.089 593 104 13 1 582 478536071 478536654 2.260000e-104 390.0
59 TraesCS3D01G147200 chr7B 82.373 295 37 10 1 294 164542922 164543202 6.700000e-60 243.0
60 TraesCS3D01G147200 chr4D 84.792 697 71 15 1 675 478727661 478728344 0.000000e+00 667.0
61 TraesCS3D01G147200 chr4D 78.236 703 115 25 3 675 418352789 418353483 3.730000e-112 416.0
62 TraesCS3D01G147200 chr4D 83.774 265 37 5 1 264 483039017 483039276 5.180000e-61 246.0
63 TraesCS3D01G147200 chr1D 83.258 663 78 13 1 640 490935603 490934951 4.490000e-161 579.0
64 TraesCS3D01G147200 chr1D 83.370 451 59 5 246 682 354464801 354464353 2.900000e-108 403.0
65 TraesCS3D01G147200 chr1D 78.797 632 99 26 1 626 319511512 319512114 6.280000e-105 392.0
66 TraesCS3D01G147200 chr1D 82.587 201 35 0 1 201 491432528 491432728 1.920000e-40 178.0
67 TraesCS3D01G147200 chr1D 81.818 209 36 2 1 208 398535297 398535504 2.480000e-39 174.0
68 TraesCS3D01G147200 chr1D 84.252 127 18 2 13 138 45172146 45172271 9.100000e-24 122.0
69 TraesCS3D01G147200 chr4B 80.602 299 45 10 1 294 28694932 28694642 1.130000e-52 219.0
70 TraesCS3D01G147200 chr4B 93.023 86 6 0 1 86 605282906 605282991 7.040000e-25 126.0
71 TraesCS3D01G147200 chr6B 86.441 59 4 3 2511 2567 4129113 4129057 2.010000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G147200 chr3D 111924039 111930721 6682 False 12342.0 12342 100.0000 1 6683 1 chr3D.!!$F2 6682
1 TraesCS3D01G147200 chr3D 54376952 54377675 723 True 878.0 878 89.6550 6008 6683 1 chr3D.!!$R1 675
2 TraesCS3D01G147200 chr3D 439814285 439815005 720 True 741.0 741 86.3640 6008 6683 1 chr3D.!!$R2 675
3 TraesCS3D01G147200 chr3D 111899135 111899690 555 False 401.0 401 80.4310 1105 1636 1 chr3D.!!$F1 531
4 TraesCS3D01G147200 chr3B 162630203 162634175 3972 False 2326.5 2573 89.1095 2130 6006 2 chr3B.!!$F5 3876
5 TraesCS3D01G147200 chr3B 162622588 162623879 1291 False 1930.0 1930 93.8900 744 2016 1 chr3B.!!$F2 1272
6 TraesCS3D01G147200 chr3B 787423827 787424511 684 False 597.0 597 82.7790 1 675 1 chr3B.!!$F4 674
7 TraesCS3D01G147200 chr3B 162521424 162522097 673 False 383.0 383 77.8100 1089 1753 1 chr3B.!!$F1 664
8 TraesCS3D01G147200 chr3A 118563442 118566182 2740 True 1899.0 1899 79.5920 3050 5905 1 chr3A.!!$R1 2855
9 TraesCS3D01G147200 chr3A 118571235 118572436 1201 True 1465.0 1465 89.0610 797 1985 1 chr3A.!!$R2 1188
10 TraesCS3D01G147200 chr3A 528533401 528534103 702 False 797.0 797 87.8530 6008 6683 1 chr3A.!!$F2 675
11 TraesCS3D01G147200 chr3A 118587595 118588296 701 True 407.0 407 77.8860 1105 1796 1 chr3A.!!$R3 691
12 TraesCS3D01G147200 chr7D 252055517 252056232 715 False 931.0 931 91.0610 6008 6683 1 chr7D.!!$F2 675
13 TraesCS3D01G147200 chr7D 78759833 78760506 673 False 479.0 479 80.2560 1 679 1 chr7D.!!$F1 678
14 TraesCS3D01G147200 chr5D 424889664 424890369 705 False 918.0 918 90.9730 6008 6680 1 chr5D.!!$F2 672
15 TraesCS3D01G147200 chr5D 383591690 383592376 686 False 656.0 656 84.2630 1 683 1 chr5D.!!$F1 682
16 TraesCS3D01G147200 chr6D 315965794 315966505 711 True 915.0 915 90.7300 6009 6683 1 chr6D.!!$R2 674
17 TraesCS3D01G147200 chr6D 315960347 315961045 698 True 854.0 854 89.3770 6008 6683 1 chr6D.!!$R1 675
18 TraesCS3D01G147200 chr6A 11866837 11867559 722 True 881.0 881 89.7790 6009 6683 1 chr6A.!!$R1 674
19 TraesCS3D01G147200 chr6A 441810834 441811518 684 False 645.0 645 84.0230 1 685 1 chr6A.!!$F1 684
20 TraesCS3D01G147200 chr6A 511035902 511036572 670 True 464.0 464 79.5020 1 671 1 chr6A.!!$R3 670
21 TraesCS3D01G147200 chr2B 665856115 665856830 715 False 881.0 881 89.8750 6008 6683 1 chr2B.!!$F3 675
22 TraesCS3D01G147200 chr2B 161991477 161992210 733 False 508.0 508 80.3260 1 686 1 chr2B.!!$F1 685
23 TraesCS3D01G147200 chr2B 484639440 484639945 505 False 422.0 422 82.2830 188 677 1 chr2B.!!$F2 489
24 TraesCS3D01G147200 chr4A 72909852 72910570 718 False 856.0 856 89.1520 6008 6683 1 chr4A.!!$F2 675
25 TraesCS3D01G147200 chr4A 72915330 72916053 723 False 839.0 839 88.6740 6008 6683 1 chr4A.!!$F3 675
26 TraesCS3D01G147200 chrUn 47746531 47747225 694 True 850.0 850 89.3160 6009 6683 1 chrUn.!!$R1 674
27 TraesCS3D01G147200 chr2A 591656012 591656737 725 True 833.0 833 88.5670 6009 6683 1 chr2A.!!$R1 674
28 TraesCS3D01G147200 chr1A 577775046 577775745 699 False 822.0 822 88.6400 6008 6683 1 chr1A.!!$F4 675
29 TraesCS3D01G147200 chr1A 323624315 323625025 710 False 804.0 804 87.9040 6009 6683 1 chr1A.!!$F1 674
30 TraesCS3D01G147200 chr5B 412435720 412436411 691 True 804.0 804 88.7450 6008 6653 1 chr5B.!!$R1 645
31 TraesCS3D01G147200 chr5B 588388026 588388659 633 False 564.0 564 83.0990 1 625 1 chr5B.!!$F2 624
32 TraesCS3D01G147200 chr5B 533542676 533543272 596 True 512.0 512 82.8620 104 678 1 chr5B.!!$R2 574
33 TraesCS3D01G147200 chr5B 65290283 65290895 612 False 422.0 422 79.5070 1 642 1 chr5B.!!$F1 641
34 TraesCS3D01G147200 chr7A 484713617 484714310 693 False 800.0 800 88.0510 6008 6683 1 chr7A.!!$F1 675
35 TraesCS3D01G147200 chr1B 622607237 622607920 683 True 795.0 795 88.1600 6009 6683 1 chr1B.!!$R1 674
36 TraesCS3D01G147200 chr1B 544737416 544737963 547 False 422.0 422 80.8170 1 556 1 chr1B.!!$F1 555
37 TraesCS3D01G147200 chr5A 88571881 88572591 710 False 793.0 793 87.7440 6009 6683 1 chr5A.!!$F1 674
38 TraesCS3D01G147200 chr5A 479911909 479912616 707 True 488.0 488 79.9440 1 679 1 chr5A.!!$R1 678
39 TraesCS3D01G147200 chr7B 736025466 736026140 674 False 701.0 701 85.4840 1 678 1 chr7B.!!$F4 677
40 TraesCS3D01G147200 chr7B 382586778 382587487 709 False 643.0 643 84.0560 6010 6680 1 chr7B.!!$F2 670
41 TraesCS3D01G147200 chr7B 478536071 478536654 583 False 390.0 390 79.0890 1 582 1 chr7B.!!$F3 581
42 TraesCS3D01G147200 chr4D 478727661 478728344 683 False 667.0 667 84.7920 1 675 1 chr4D.!!$F2 674
43 TraesCS3D01G147200 chr4D 418352789 418353483 694 False 416.0 416 78.2360 3 675 1 chr4D.!!$F1 672
44 TraesCS3D01G147200 chr1D 490934951 490935603 652 True 579.0 579 83.2580 1 640 1 chr1D.!!$R2 639
45 TraesCS3D01G147200 chr1D 319511512 319512114 602 False 392.0 392 78.7970 1 626 1 chr1D.!!$F2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 990 0.034337 TCGGGTTCGGGAAAGTTCAG 59.966 55.0 0.00 0.00 36.95 3.02 F
1043 1285 0.324275 ATAAACCTGCCGGCCATTGT 60.324 50.0 26.77 12.83 0.00 2.71 F
1832 2120 1.634702 GAAGAAGGCTACAGCGACAG 58.365 55.0 0.00 0.00 43.26 3.51 F
2072 2372 0.029834 CCCTATTCGCTGCACATTGC 59.970 55.0 0.00 0.00 45.29 3.56 F
3037 3343 0.610687 CATAGGAGCTCCCCGGAATC 59.389 60.0 29.54 1.26 36.42 2.52 F
4356 4724 0.038159 TCGTGTGTGTGTGTGTGTGA 60.038 50.0 0.00 0.00 0.00 3.58 F
5161 5649 0.098728 GTGCAAGCAGTGTTGTCGTT 59.901 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2353 0.029834 GCAATGTGCAGCGAATAGGG 59.970 55.000 0.00 0.0 44.26 3.53 R
2056 2356 0.099259 GCAGCAATGTGCAGCGAATA 59.901 50.000 1.75 0.0 45.45 1.75 R
2972 3278 0.250793 TGGGACACACAACAGTTCGT 59.749 50.000 0.00 0.0 0.00 3.85 R
3708 4016 1.283613 TCGGCAACTCCCCAAACATAT 59.716 47.619 0.00 0.0 0.00 1.78 R
5021 5509 0.036306 AACGAGGGGACACCATTGTC 59.964 55.000 0.00 0.0 44.18 3.18 R
5529 6018 0.109086 CCTATAGGCCGATGCTGACG 60.109 60.000 8.86 0.0 37.74 4.35 R
6091 6580 1.267121 TTAGCCTCACTCACTCCACC 58.733 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 1.478654 GGGGTGTTGATGAACTGGTGT 60.479 52.381 0.00 0.00 32.79 4.16
102 115 0.322648 CAGCTCTGGTCATGGTGTGA 59.677 55.000 0.00 0.00 0.00 3.58
142 156 2.827921 CCTGGAAGAACAAAAGGATGGG 59.172 50.000 0.00 0.00 34.07 4.00
143 157 3.500343 CTGGAAGAACAAAAGGATGGGT 58.500 45.455 0.00 0.00 34.07 4.51
328 522 5.755849 ACGATGAACTTTCCCCTATTCAAT 58.244 37.500 0.00 0.00 34.88 2.57
331 525 6.017605 CGATGAACTTTCCCCTATTCAATCAG 60.018 42.308 0.00 0.00 34.88 2.90
371 586 5.989477 TGTACTGCCATTTGATAGTAGCTT 58.011 37.500 0.00 0.00 0.00 3.74
444 661 1.513858 TGGTAAGGTCACCACCACTT 58.486 50.000 1.67 0.00 46.68 3.16
544 771 6.011481 ACGGTGGGTCAAAATTAATTTCCTA 58.989 36.000 13.68 6.51 0.00 2.94
549 779 7.010091 GTGGGTCAAAATTAATTTCCTAATGCG 59.990 37.037 13.68 0.00 0.00 4.73
571 801 2.550208 GCTAACCTATATGCGGGCAACT 60.550 50.000 0.00 0.00 0.00 3.16
575 805 3.740115 ACCTATATGCGGGCAACTAAAG 58.260 45.455 0.00 0.00 0.00 1.85
580 810 1.091537 TGCGGGCAACTAAAGTATGC 58.908 50.000 0.00 8.06 39.33 3.14
595 825 6.500684 AAAGTATGCACAGATGGTAGTTTG 57.499 37.500 0.00 0.00 0.00 2.93
603 833 3.583086 ACAGATGGTAGTTTGTAGGCTGT 59.417 43.478 0.00 0.00 0.00 4.40
648 878 1.881973 AGAATCACATGCAACGCAACT 59.118 42.857 0.00 0.00 43.62 3.16
658 888 4.930463 TGCAACGCAACTAAAATCGATA 57.070 36.364 0.00 0.00 34.76 2.92
679 910 1.680989 GGCAACCAAATACGCCCCT 60.681 57.895 0.00 0.00 38.67 4.79
681 912 1.021968 GCAACCAAATACGCCCCTAG 58.978 55.000 0.00 0.00 0.00 3.02
686 917 1.485066 CCAAATACGCCCCTAGTGTCT 59.515 52.381 0.00 0.00 40.51 3.41
687 918 2.093128 CCAAATACGCCCCTAGTGTCTT 60.093 50.000 0.00 0.00 40.51 3.01
688 919 3.195661 CAAATACGCCCCTAGTGTCTTC 58.804 50.000 0.00 0.00 40.51 2.87
689 920 1.030457 ATACGCCCCTAGTGTCTTCG 58.970 55.000 0.00 0.00 40.51 3.79
690 921 0.322816 TACGCCCCTAGTGTCTTCGT 60.323 55.000 0.00 0.00 40.51 3.85
691 922 1.139095 CGCCCCTAGTGTCTTCGTC 59.861 63.158 0.00 0.00 0.00 4.20
692 923 1.313812 CGCCCCTAGTGTCTTCGTCT 61.314 60.000 0.00 0.00 0.00 4.18
693 924 0.173708 GCCCCTAGTGTCTTCGTCTG 59.826 60.000 0.00 0.00 0.00 3.51
694 925 0.818296 CCCCTAGTGTCTTCGTCTGG 59.182 60.000 0.00 0.00 0.00 3.86
695 926 1.616187 CCCCTAGTGTCTTCGTCTGGA 60.616 57.143 0.00 0.00 0.00 3.86
696 927 2.168496 CCCTAGTGTCTTCGTCTGGAA 58.832 52.381 0.00 0.00 0.00 3.53
697 928 2.094649 CCCTAGTGTCTTCGTCTGGAAC 60.095 54.545 0.00 0.00 0.00 3.62
698 929 2.557056 CCTAGTGTCTTCGTCTGGAACA 59.443 50.000 0.00 0.00 0.00 3.18
699 930 3.193691 CCTAGTGTCTTCGTCTGGAACAT 59.806 47.826 0.00 0.00 38.20 2.71
700 931 3.032017 AGTGTCTTCGTCTGGAACATG 57.968 47.619 0.00 0.00 38.20 3.21
701 932 2.069273 GTGTCTTCGTCTGGAACATGG 58.931 52.381 0.00 0.00 38.20 3.66
702 933 1.967779 TGTCTTCGTCTGGAACATGGA 59.032 47.619 0.00 0.00 38.20 3.41
703 934 2.367241 TGTCTTCGTCTGGAACATGGAA 59.633 45.455 0.00 0.00 38.20 3.53
704 935 3.181459 TGTCTTCGTCTGGAACATGGAAA 60.181 43.478 0.00 0.00 38.20 3.13
705 936 4.003648 GTCTTCGTCTGGAACATGGAAAT 58.996 43.478 0.00 0.00 38.20 2.17
706 937 4.455877 GTCTTCGTCTGGAACATGGAAATT 59.544 41.667 0.00 0.00 38.20 1.82
707 938 5.048713 GTCTTCGTCTGGAACATGGAAATTT 60.049 40.000 0.00 0.00 38.20 1.82
708 939 5.181245 TCTTCGTCTGGAACATGGAAATTTC 59.819 40.000 9.83 9.83 38.20 2.17
709 940 4.651778 TCGTCTGGAACATGGAAATTTCT 58.348 39.130 17.42 0.00 38.20 2.52
710 941 4.695455 TCGTCTGGAACATGGAAATTTCTC 59.305 41.667 17.42 6.95 38.20 2.87
711 942 4.455533 CGTCTGGAACATGGAAATTTCTCA 59.544 41.667 17.42 13.58 38.20 3.27
712 943 5.124457 CGTCTGGAACATGGAAATTTCTCAT 59.876 40.000 17.42 15.06 38.20 2.90
713 944 6.327934 GTCTGGAACATGGAAATTTCTCATG 58.672 40.000 29.03 29.03 39.55 3.07
714 945 5.419788 TCTGGAACATGGAAATTTCTCATGG 59.580 40.000 31.27 21.69 38.77 3.66
715 946 5.331906 TGGAACATGGAAATTTCTCATGGA 58.668 37.500 31.27 19.64 38.77 3.41
716 947 5.959594 TGGAACATGGAAATTTCTCATGGAT 59.040 36.000 31.27 25.03 38.77 3.41
717 948 6.097270 TGGAACATGGAAATTTCTCATGGATC 59.903 38.462 31.27 28.16 38.77 3.36
718 949 6.323225 GGAACATGGAAATTTCTCATGGATCT 59.677 38.462 31.27 21.29 38.77 2.75
719 950 7.503566 GGAACATGGAAATTTCTCATGGATCTA 59.496 37.037 31.27 5.82 38.77 1.98
720 951 8.827832 AACATGGAAATTTCTCATGGATCTAA 57.172 30.769 31.27 7.05 38.77 2.10
721 952 8.230472 ACATGGAAATTTCTCATGGATCTAAC 57.770 34.615 31.27 12.09 38.77 2.34
722 953 7.835682 ACATGGAAATTTCTCATGGATCTAACA 59.164 33.333 31.27 15.81 38.77 2.41
723 954 7.870509 TGGAAATTTCTCATGGATCTAACAG 57.129 36.000 17.42 0.00 0.00 3.16
724 955 6.830324 TGGAAATTTCTCATGGATCTAACAGG 59.170 38.462 17.42 0.00 0.00 4.00
725 956 6.830838 GGAAATTTCTCATGGATCTAACAGGT 59.169 38.462 17.42 0.00 0.00 4.00
726 957 7.993183 GGAAATTTCTCATGGATCTAACAGGTA 59.007 37.037 17.42 0.00 0.00 3.08
727 958 8.970859 AAATTTCTCATGGATCTAACAGGTAG 57.029 34.615 0.00 0.00 0.00 3.18
728 959 7.682787 ATTTCTCATGGATCTAACAGGTAGT 57.317 36.000 0.00 0.00 0.00 2.73
729 960 7.496346 TTTCTCATGGATCTAACAGGTAGTT 57.504 36.000 0.00 0.00 44.27 2.24
730 961 6.471233 TCTCATGGATCTAACAGGTAGTTG 57.529 41.667 0.00 0.00 41.50 3.16
731 962 5.023533 TCATGGATCTAACAGGTAGTTGC 57.976 43.478 0.00 0.00 41.50 4.17
732 963 4.716784 TCATGGATCTAACAGGTAGTTGCT 59.283 41.667 0.00 0.00 41.50 3.91
733 964 4.471904 TGGATCTAACAGGTAGTTGCTG 57.528 45.455 0.00 0.00 41.50 4.41
734 965 3.838317 TGGATCTAACAGGTAGTTGCTGT 59.162 43.478 0.00 0.00 41.50 4.40
735 966 4.184629 GGATCTAACAGGTAGTTGCTGTG 58.815 47.826 0.00 0.00 41.50 3.66
736 967 3.040147 TCTAACAGGTAGTTGCTGTGC 57.960 47.619 0.00 0.00 41.50 4.57
737 968 2.367241 TCTAACAGGTAGTTGCTGTGCA 59.633 45.455 0.00 0.00 41.50 4.57
738 969 2.051334 AACAGGTAGTTGCTGTGCAA 57.949 45.000 0.45 0.45 46.80 4.08
748 979 1.154225 GCTGTGCAATTCGGGTTCG 60.154 57.895 0.00 0.00 37.82 3.95
749 980 1.501741 CTGTGCAATTCGGGTTCGG 59.498 57.895 0.00 0.00 36.95 4.30
759 990 0.034337 TCGGGTTCGGGAAAGTTCAG 59.966 55.000 0.00 0.00 36.95 3.02
782 1014 6.020678 CAGCGGCTAAAATTCCTTAAATTTCG 60.021 38.462 0.26 0.00 44.88 3.46
806 1038 5.363939 GAAGAAAATCCACATCGATCTCCT 58.636 41.667 0.00 0.00 0.00 3.69
813 1045 3.384789 TCCACATCGATCTCCTAACCAAG 59.615 47.826 0.00 0.00 0.00 3.61
895 1128 1.939974 TATGTCAGCCTCGCATCAAC 58.060 50.000 0.00 0.00 0.00 3.18
898 1131 2.434884 CAGCCTCGCATCAACCGT 60.435 61.111 0.00 0.00 0.00 4.83
979 1216 2.591429 CCTGAGCACCGTGTTGCA 60.591 61.111 0.00 0.00 45.62 4.08
980 1217 2.186160 CCTGAGCACCGTGTTGCAA 61.186 57.895 0.00 0.00 45.62 4.08
981 1218 1.280746 CTGAGCACCGTGTTGCAAG 59.719 57.895 0.00 0.00 45.62 4.01
1043 1285 0.324275 ATAAACCTGCCGGCCATTGT 60.324 50.000 26.77 12.83 0.00 2.71
1120 1383 3.408229 CTGCCATGTCAGGGACCT 58.592 61.111 7.96 0.00 0.00 3.85
1641 1928 2.479650 CAGTCGTCGTCGTCCTCC 59.520 66.667 1.33 0.00 38.33 4.30
1642 1929 2.745492 AGTCGTCGTCGTCCTCCC 60.745 66.667 1.33 0.00 38.33 4.30
1647 1934 3.654143 TCGTCGTCCTCCCCCTCA 61.654 66.667 0.00 0.00 0.00 3.86
1650 1937 2.134933 GTCGTCCTCCCCCTCATCC 61.135 68.421 0.00 0.00 0.00 3.51
1688 1975 2.590575 ACAGGCGTTGTTCGTGGG 60.591 61.111 0.00 0.00 36.31 4.61
1778 2066 1.757340 CGGGGTAGGAGGTCAGTCC 60.757 68.421 0.00 0.00 36.79 3.85
1808 2096 4.816385 TCCTATTCCTAAATTGCAGCGAAG 59.184 41.667 0.00 0.00 0.00 3.79
1832 2120 1.634702 GAAGAAGGCTACAGCGACAG 58.365 55.000 0.00 0.00 43.26 3.51
2027 2327 8.611051 AGAGTAAAATCTGTATAGGGTTGACT 57.389 34.615 0.00 0.00 0.00 3.41
2028 2328 9.710818 AGAGTAAAATCTGTATAGGGTTGACTA 57.289 33.333 0.00 0.00 0.00 2.59
2033 2333 7.931015 AATCTGTATAGGGTTGACTAATCCA 57.069 36.000 0.00 0.00 39.70 3.41
2034 2334 8.511748 AATCTGTATAGGGTTGACTAATCCAT 57.488 34.615 0.00 0.00 39.70 3.41
2035 2335 9.615660 AATCTGTATAGGGTTGACTAATCCATA 57.384 33.333 0.00 0.00 39.70 2.74
2036 2336 9.790297 ATCTGTATAGGGTTGACTAATCCATAT 57.210 33.333 0.00 0.00 39.70 1.78
2039 2339 9.831682 TGTATAGGGTTGACTAATCCATATACA 57.168 33.333 17.78 17.78 39.70 2.29
2042 2342 7.931015 AGGGTTGACTAATCCATATACAGAA 57.069 36.000 0.00 0.00 39.70 3.02
2043 2343 7.967908 AGGGTTGACTAATCCATATACAGAAG 58.032 38.462 0.00 0.00 39.70 2.85
2044 2344 7.789831 AGGGTTGACTAATCCATATACAGAAGA 59.210 37.037 0.00 0.00 39.70 2.87
2045 2345 8.429641 GGGTTGACTAATCCATATACAGAAGAA 58.570 37.037 0.00 0.00 37.03 2.52
2055 2355 7.060421 TCCATATACAGAAGAATGGAAAACCC 58.940 38.462 0.49 0.00 43.73 4.11
2056 2356 7.062957 CCATATACAGAAGAATGGAAAACCCT 58.937 38.462 0.00 0.00 41.20 4.34
2057 2357 8.217799 CCATATACAGAAGAATGGAAAACCCTA 58.782 37.037 0.00 0.00 41.20 3.53
2058 2358 9.799106 CATATACAGAAGAATGGAAAACCCTAT 57.201 33.333 0.00 0.00 35.38 2.57
2060 2360 8.753497 ATACAGAAGAATGGAAAACCCTATTC 57.247 34.615 0.00 0.00 35.00 1.75
2061 2361 5.648092 ACAGAAGAATGGAAAACCCTATTCG 59.352 40.000 0.00 0.00 37.44 3.34
2062 2362 4.640647 AGAAGAATGGAAAACCCTATTCGC 59.359 41.667 0.00 0.00 37.44 4.70
2063 2363 4.236527 AGAATGGAAAACCCTATTCGCT 57.763 40.909 0.00 0.00 37.44 4.93
2064 2364 3.947834 AGAATGGAAAACCCTATTCGCTG 59.052 43.478 0.00 0.00 37.44 5.18
2065 2365 1.459450 TGGAAAACCCTATTCGCTGC 58.541 50.000 0.00 0.00 35.38 5.25
2066 2366 1.271652 TGGAAAACCCTATTCGCTGCA 60.272 47.619 0.00 0.00 35.38 4.41
2067 2367 1.132453 GGAAAACCCTATTCGCTGCAC 59.868 52.381 0.00 0.00 0.00 4.57
2068 2368 1.810151 GAAAACCCTATTCGCTGCACA 59.190 47.619 0.00 0.00 0.00 4.57
2069 2369 2.128771 AAACCCTATTCGCTGCACAT 57.871 45.000 0.00 0.00 0.00 3.21
2070 2370 2.128771 AACCCTATTCGCTGCACATT 57.871 45.000 0.00 0.00 0.00 2.71
2071 2371 1.382522 ACCCTATTCGCTGCACATTG 58.617 50.000 0.00 0.00 0.00 2.82
2072 2372 0.029834 CCCTATTCGCTGCACATTGC 59.970 55.000 0.00 0.00 45.29 3.56
2073 2373 1.019673 CCTATTCGCTGCACATTGCT 58.980 50.000 0.00 0.00 45.31 3.91
2074 2374 1.268386 CCTATTCGCTGCACATTGCTG 60.268 52.381 0.00 0.08 45.31 4.41
2083 2383 3.581755 CTGCACATTGCTGCAAAATAGT 58.418 40.909 20.06 12.41 46.46 2.12
2084 2384 3.577667 TGCACATTGCTGCAAAATAGTC 58.422 40.909 20.06 7.35 44.28 2.59
2085 2385 2.595536 GCACATTGCTGCAAAATAGTCG 59.404 45.455 20.06 10.82 40.96 4.18
2086 2386 3.173599 CACATTGCTGCAAAATAGTCGG 58.826 45.455 20.06 4.50 0.00 4.79
2087 2387 3.081061 ACATTGCTGCAAAATAGTCGGA 58.919 40.909 20.06 0.00 0.00 4.55
2088 2388 3.127548 ACATTGCTGCAAAATAGTCGGAG 59.872 43.478 20.06 2.45 0.00 4.63
2089 2389 1.086696 TGCTGCAAAATAGTCGGAGC 58.913 50.000 0.00 0.00 43.61 4.70
2090 2390 1.339055 TGCTGCAAAATAGTCGGAGCT 60.339 47.619 0.00 0.00 43.68 4.09
2091 2391 1.740025 GCTGCAAAATAGTCGGAGCTT 59.260 47.619 0.00 0.00 40.54 3.74
2092 2392 2.162408 GCTGCAAAATAGTCGGAGCTTT 59.838 45.455 0.00 0.00 40.54 3.51
2093 2393 3.751621 CTGCAAAATAGTCGGAGCTTTG 58.248 45.455 0.00 0.00 0.00 2.77
2094 2394 2.519963 GCAAAATAGTCGGAGCTTTGC 58.480 47.619 2.46 2.46 43.38 3.68
2095 2395 2.095263 GCAAAATAGTCGGAGCTTTGCA 60.095 45.455 11.75 0.00 46.97 4.08
2096 2396 3.492313 CAAAATAGTCGGAGCTTTGCAC 58.508 45.455 0.00 0.00 0.00 4.57
2097 2397 2.472695 AATAGTCGGAGCTTTGCACA 57.527 45.000 0.00 0.00 0.00 4.57
2098 2398 2.472695 ATAGTCGGAGCTTTGCACAA 57.527 45.000 0.00 0.00 0.00 3.33
2099 2399 1.795768 TAGTCGGAGCTTTGCACAAG 58.204 50.000 0.00 0.00 0.00 3.16
2100 2400 0.886490 AGTCGGAGCTTTGCACAAGG 60.886 55.000 9.63 0.00 0.00 3.61
2101 2401 2.256461 CGGAGCTTTGCACAAGGC 59.744 61.111 9.26 9.26 42.83 4.35
2110 2410 3.910490 GCACAAGGCGCCCACAAA 61.910 61.111 26.15 0.00 0.00 2.83
2111 2411 2.811101 CACAAGGCGCCCACAAAA 59.189 55.556 26.15 0.00 0.00 2.44
2112 2412 1.300080 CACAAGGCGCCCACAAAAG 60.300 57.895 26.15 7.81 0.00 2.27
2113 2413 2.339712 CAAGGCGCCCACAAAAGG 59.660 61.111 26.15 0.00 0.00 3.11
2122 2422 3.683937 CACAAAAGGGCCGGCCAG 61.684 66.667 44.46 28.98 37.98 4.85
2123 2423 4.218686 ACAAAAGGGCCGGCCAGT 62.219 61.111 44.46 29.78 37.98 4.00
2124 2424 2.917227 CAAAAGGGCCGGCCAGTT 60.917 61.111 44.46 33.39 37.98 3.16
2125 2425 2.600470 AAAAGGGCCGGCCAGTTC 60.600 61.111 44.46 28.25 37.98 3.01
2126 2426 3.146828 AAAAGGGCCGGCCAGTTCT 62.147 57.895 44.46 30.07 37.98 3.01
2127 2427 3.569200 AAAGGGCCGGCCAGTTCTC 62.569 63.158 44.46 27.09 37.98 2.87
2140 2440 5.064198 CGGCCAGTTCTCGTTTTCATAAATA 59.936 40.000 2.24 0.00 0.00 1.40
2145 2445 9.840427 CCAGTTCTCGTTTTCATAAATACAAAT 57.160 29.630 0.00 0.00 0.00 2.32
2227 2527 8.586879 TTTTCCCAAAAATGTTCCAAATTTCT 57.413 26.923 0.00 0.00 29.44 2.52
2230 2530 7.516452 TCCCAAAAATGTTCCAAATTTCTCAT 58.484 30.769 0.00 0.00 0.00 2.90
2260 2561 9.835389 AATCATGTTTTGGAAAAATCTCAGAAA 57.165 25.926 0.00 0.00 0.00 2.52
2386 2688 7.951706 AAAATGTTCGTGCTTTCAAAAATTG 57.048 28.000 0.00 0.00 0.00 2.32
2453 2755 7.867445 AAATTCAAAAACAGTTGGCGTATAG 57.133 32.000 0.00 0.00 0.00 1.31
2457 2759 7.209471 TCAAAAACAGTTGGCGTATAGAAAT 57.791 32.000 0.00 0.00 0.00 2.17
2458 2760 7.081349 TCAAAAACAGTTGGCGTATAGAAATG 58.919 34.615 0.00 0.00 0.00 2.32
2459 2761 6.569179 AAAACAGTTGGCGTATAGAAATGT 57.431 33.333 0.00 0.00 29.67 2.71
2461 2763 5.796350 ACAGTTGGCGTATAGAAATGTTC 57.204 39.130 0.00 0.00 0.00 3.18
2462 2764 5.242434 ACAGTTGGCGTATAGAAATGTTCA 58.758 37.500 0.00 0.00 0.00 3.18
2463 2765 5.121768 ACAGTTGGCGTATAGAAATGTTCAC 59.878 40.000 0.00 0.00 0.00 3.18
2464 2766 4.328983 AGTTGGCGTATAGAAATGTTCACG 59.671 41.667 0.00 0.00 32.00 4.35
2465 2767 3.852286 TGGCGTATAGAAATGTTCACGT 58.148 40.909 0.00 0.00 31.62 4.49
2485 2789 8.758633 TCACGTTTCTAAAATTTGTTCCAAAA 57.241 26.923 0.00 0.00 0.00 2.44
2503 2807 8.696175 GTTCCAAAATTTTAAGACATGTTACCG 58.304 33.333 2.44 0.00 0.00 4.02
2516 2820 8.125728 AGACATGTTACCGTTTTTCAAAATTG 57.874 30.769 0.00 0.00 0.00 2.32
2527 2831 7.477112 CCGTTTTTCAAAATTGTTCACAAGTTC 59.523 33.333 5.88 0.00 42.38 3.01
2575 2879 9.467258 AAATGTTCACACTTTCAAGATATGTTG 57.533 29.630 6.25 6.25 0.00 3.33
2578 2882 7.914871 TGTTCACACTTTCAAGATATGTTGTTG 59.085 33.333 11.96 8.10 0.00 3.33
2601 2905 6.849502 TGTTTACAAACCGTGTTCATGTTTA 58.150 32.000 2.55 0.00 41.98 2.01
2602 2906 7.310664 TGTTTACAAACCGTGTTCATGTTTAA 58.689 30.769 2.55 0.00 41.98 1.52
2792 3098 1.597742 AATCTGAGTTTGCAGTGCGT 58.402 45.000 11.20 0.00 37.20 5.24
2801 3107 4.290155 AGTTTGCAGTGCGTTCTTAAATG 58.710 39.130 11.20 0.00 0.00 2.32
2804 3110 4.300189 TGCAGTGCGTTCTTAAATGTTT 57.700 36.364 11.20 0.00 0.00 2.83
2823 3129 0.692476 TGCACTGGCCATTAGTCACT 59.308 50.000 5.51 0.00 40.13 3.41
2824 3130 1.089920 GCACTGGCCATTAGTCACTG 58.910 55.000 5.51 0.00 0.00 3.66
2825 3131 1.742761 CACTGGCCATTAGTCACTGG 58.257 55.000 5.51 0.00 35.53 4.00
2832 3138 1.089920 CATTAGTCACTGGCAGGCAC 58.910 55.000 20.34 14.25 0.00 5.01
2850 3156 0.969894 ACTGGTTCGAGTTGCTAGCT 59.030 50.000 17.23 0.00 0.00 3.32
2874 3180 4.726021 GCACGTGATCATGTCTTTGATGTC 60.726 45.833 22.23 0.00 36.48 3.06
2892 3198 6.025896 TGATGTCGTGAGTTCGATACTTAAC 58.974 40.000 0.00 0.00 41.78 2.01
2899 3205 2.162208 AGTTCGATACTTAACCGCGTCA 59.838 45.455 4.92 0.00 31.29 4.35
2900 3206 2.178474 TCGATACTTAACCGCGTCAC 57.822 50.000 4.92 0.00 0.00 3.67
2913 3219 5.713822 ACCGCGTCACTATTTTTAGATTC 57.286 39.130 4.92 0.00 0.00 2.52
2920 3226 8.260550 GCGTCACTATTTTTAGATTCTTACTCG 58.739 37.037 0.00 0.00 0.00 4.18
2923 3229 9.084164 TCACTATTTTTAGATTCTTACTCGTGC 57.916 33.333 0.00 0.00 0.00 5.34
2939 3245 1.595794 CGTGCGGTAGAAACACAAGTT 59.404 47.619 0.00 0.00 40.40 2.66
2954 3260 2.094234 ACAAGTTGTTTTGGTGAGTGCC 60.094 45.455 1.64 0.00 32.32 5.01
2956 3262 2.175202 AGTTGTTTTGGTGAGTGCCAA 58.825 42.857 0.00 0.00 45.83 4.52
3037 3343 0.610687 CATAGGAGCTCCCCGGAATC 59.389 60.000 29.54 1.26 36.42 2.52
3039 3345 0.759436 TAGGAGCTCCCCGGAATCAC 60.759 60.000 29.54 0.00 36.42 3.06
3075 3381 2.561069 GGGTGGGGATAAAATTGTGGGT 60.561 50.000 0.00 0.00 0.00 4.51
3081 3387 6.821160 GTGGGGATAAAATTGTGGGTTAAATG 59.179 38.462 0.00 0.00 0.00 2.32
3120 3426 3.152341 GTGCTCCCTCCATCCAAATATG 58.848 50.000 0.00 0.00 0.00 1.78
3128 3434 4.263506 CCTCCATCCAAATATGTAGGGACC 60.264 50.000 0.00 0.00 31.14 4.46
3166 3472 6.458210 AGGTTGTTTTTGCCATTGATAAGAG 58.542 36.000 0.00 0.00 0.00 2.85
3257 3564 7.962934 TGCTATACGTTTTGTAAAATGCATC 57.037 32.000 0.00 0.00 38.21 3.91
3261 3568 9.210426 CTATACGTTTTGTAAAATGCATCTCAC 57.790 33.333 0.00 0.00 38.21 3.51
3278 3585 7.979537 TGCATCTCACGTATTATTGTTCTAACT 59.020 33.333 0.00 0.00 0.00 2.24
3283 3590 9.302345 CTCACGTATTATTGTTCTAACTGATGT 57.698 33.333 0.00 0.00 0.00 3.06
3517 3824 1.704641 TGTGTAGCACTCAGGACTGT 58.295 50.000 0.00 0.00 35.11 3.55
3530 3837 5.596361 ACTCAGGACTGTTAGAGATATGTGG 59.404 44.000 10.64 0.00 32.59 4.17
3555 3862 4.428294 TCCAAATCTAGAGGCAAGATGG 57.572 45.455 0.00 0.00 33.95 3.51
3588 3896 3.420893 TCATTCTCTGACCGGCAAATTT 58.579 40.909 0.00 0.00 0.00 1.82
3625 3933 2.241160 TGTGTCTGCATGAGCCAATTT 58.759 42.857 0.00 0.00 41.13 1.82
3628 3936 1.739466 GTCTGCATGAGCCAATTTCGA 59.261 47.619 0.00 0.00 41.13 3.71
3687 3995 7.674348 CCCATCTAGATACTCCAACAACCTATA 59.326 40.741 4.54 0.00 0.00 1.31
3733 4041 4.410400 GGGGAGTTGCCGACCAGG 62.410 72.222 0.00 0.00 44.97 4.45
3759 4067 8.292448 GCAGTAAAGAGTCATCAAAGATTGAAA 58.708 33.333 0.00 0.00 43.95 2.69
3763 4071 6.889301 AGAGTCATCAAAGATTGAAAAGCA 57.111 33.333 0.00 0.00 43.95 3.91
3810 4161 9.847224 ATGTATAGGAGTTTCATCGGTATTTTT 57.153 29.630 0.00 0.00 0.00 1.94
3949 4315 6.493458 ACAACCATTTAAATAACTGGTGAGCT 59.507 34.615 13.86 0.00 45.09 4.09
3951 4317 5.652452 ACCATTTAAATAACTGGTGAGCTCC 59.348 40.000 12.15 2.19 44.44 4.70
4006 4373 7.366847 TGGAAGAATAGGACTTAGATTCCAG 57.633 40.000 0.00 0.00 39.88 3.86
4065 4432 5.008911 GGCTTTGGACAAGCAAATTTTGAAT 59.991 36.000 13.26 0.00 44.71 2.57
4080 4447 4.640771 TTTGAATCTCCAAGTACTGGCT 57.359 40.909 0.00 0.00 45.98 4.75
4096 4463 7.806180 AGTACTGGCTATAACCTTGATTGATT 58.194 34.615 0.00 0.00 0.00 2.57
4115 4483 4.584325 TGATTAGGGGTGAAATTATGCTGC 59.416 41.667 0.00 0.00 0.00 5.25
4125 4493 4.164030 TGAAATTATGCTGCTAGGTCTCCA 59.836 41.667 0.00 0.00 0.00 3.86
4136 4504 6.017852 GCTGCTAGGTCTCCAAATATTACAAC 60.018 42.308 0.00 0.00 0.00 3.32
4184 4552 1.614903 TGGCAAAGGAGTGCATTTCAG 59.385 47.619 0.00 0.00 46.81 3.02
4204 4572 1.628846 GGGGACTTTTGTGCTAGAGGA 59.371 52.381 0.00 0.00 40.82 3.71
4207 4575 3.055094 GGGACTTTTGTGCTAGAGGATGA 60.055 47.826 0.00 0.00 40.82 2.92
4209 4577 5.189180 GGACTTTTGTGCTAGAGGATGATT 58.811 41.667 0.00 0.00 37.80 2.57
4231 4599 4.524802 AACCCATCTATCATGCCAGAAA 57.475 40.909 0.89 0.00 0.00 2.52
4323 4691 2.978156 TTCCACCAGAAGCATCCTTT 57.022 45.000 0.00 0.00 0.00 3.11
4329 4697 4.524328 CCACCAGAAGCATCCTTTTAGTTT 59.476 41.667 0.00 0.00 0.00 2.66
4336 4704 5.551305 AGCATCCTTTTAGTTTGCCTTTT 57.449 34.783 0.00 0.00 33.85 2.27
4347 4715 2.270275 TTGCCTTTTTCGTGTGTGTG 57.730 45.000 0.00 0.00 0.00 3.82
4348 4716 1.169577 TGCCTTTTTCGTGTGTGTGT 58.830 45.000 0.00 0.00 0.00 3.72
4350 4718 1.135517 GCCTTTTTCGTGTGTGTGTGT 60.136 47.619 0.00 0.00 0.00 3.72
4352 4720 2.095466 CCTTTTTCGTGTGTGTGTGTGT 60.095 45.455 0.00 0.00 0.00 3.72
4354 4722 1.514003 TTTCGTGTGTGTGTGTGTGT 58.486 45.000 0.00 0.00 0.00 3.72
4355 4723 0.793250 TTCGTGTGTGTGTGTGTGTG 59.207 50.000 0.00 0.00 0.00 3.82
4356 4724 0.038159 TCGTGTGTGTGTGTGTGTGA 60.038 50.000 0.00 0.00 0.00 3.58
4357 4725 0.369931 CGTGTGTGTGTGTGTGTGAG 59.630 55.000 0.00 0.00 0.00 3.51
4358 4726 1.720805 GTGTGTGTGTGTGTGTGAGA 58.279 50.000 0.00 0.00 0.00 3.27
4359 4727 1.660607 GTGTGTGTGTGTGTGTGAGAG 59.339 52.381 0.00 0.00 0.00 3.20
4360 4728 1.548269 TGTGTGTGTGTGTGTGAGAGA 59.452 47.619 0.00 0.00 0.00 3.10
4361 4729 2.196749 GTGTGTGTGTGTGTGAGAGAG 58.803 52.381 0.00 0.00 0.00 3.20
4362 4730 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
4363 4731 2.099756 TGTGTGTGTGTGTGAGAGAGAG 59.900 50.000 0.00 0.00 0.00 3.20
4364 4732 2.359214 GTGTGTGTGTGTGAGAGAGAGA 59.641 50.000 0.00 0.00 0.00 3.10
4365 4733 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
4366 4734 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
4367 4735 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
4368 4736 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
4369 4737 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
4370 4738 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
4371 4739 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
4372 4740 3.837731 TGTGTGAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
4373 4741 4.081476 TGTGTGAGAGAGAGAGAGAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
4374 4742 4.160439 GTGTGAGAGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
4375 4743 4.403752 TGTGAGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
4376 4744 3.963374 TGAGAGAGAGAGAGAGAGAGAGG 59.037 52.174 0.00 0.00 0.00 3.69
4377 4745 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
4378 4746 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
4379 4747 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
4380 4748 2.370189 GAGAGAGAGAGAGAGAGGGAGG 59.630 59.091 0.00 0.00 0.00 4.30
4381 4749 1.421646 GAGAGAGAGAGAGAGGGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
4382 4750 0.478507 GAGAGAGAGAGAGGGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
4383 4751 0.998945 AGAGAGAGAGAGGGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
4402 4770 4.763279 GGGGGTATTGTAATATGTTTCCCG 59.237 45.833 0.00 0.00 33.84 5.14
4418 4900 3.604875 TCCCGAATAAGTTCACTCCAC 57.395 47.619 0.00 0.00 33.86 4.02
4425 4907 0.680061 AAGTTCACTCCACGGAGGAC 59.320 55.000 17.29 11.94 45.88 3.85
4447 4929 7.893658 GGACTAGCCTTATTGTAGCACTTATA 58.106 38.462 0.00 0.00 0.00 0.98
4515 4998 8.554870 TGGTACTACTAGTCCTCTCTGAATTTA 58.445 37.037 0.00 0.00 0.00 1.40
4519 5002 8.117312 ACTACTAGTCCTCTCTGAATTTAAGGT 58.883 37.037 0.00 0.00 0.00 3.50
4523 5006 7.176589 AGTCCTCTCTGAATTTAAGGTGTAG 57.823 40.000 0.00 0.00 0.00 2.74
4607 5090 6.072112 AGGCAATGTGTAGTTTACTTGTTG 57.928 37.500 0.00 0.00 0.00 3.33
4691 5174 2.298446 AGATATGATCGGGTGCACTCTG 59.702 50.000 16.21 11.22 0.00 3.35
4697 5180 2.821366 GGGTGCACTCTGCCATCG 60.821 66.667 17.98 0.00 44.23 3.84
4770 5254 5.596361 ACACACCCATTCAAGTATGTTTTCA 59.404 36.000 0.00 0.00 0.00 2.69
4840 5327 1.267038 GCGTGTAATGCGATGACACAG 60.267 52.381 13.75 9.22 42.93 3.66
4862 5349 8.453320 CACAGTCATATATGTTTGACATTGTGT 58.547 33.333 18.19 10.94 43.72 3.72
4938 5426 6.267496 ACCATGTACTTGCATAAAGGTTTC 57.733 37.500 3.24 0.00 40.51 2.78
4942 5430 7.329226 CCATGTACTTGCATAAAGGTTTCAAAG 59.671 37.037 3.24 0.00 40.51 2.77
4944 5432 8.001881 TGTACTTGCATAAAGGTTTCAAAGAA 57.998 30.769 0.00 0.00 40.51 2.52
4957 5445 3.959991 AAAGAAGCCTCCCGAGCGC 62.960 63.158 0.00 0.00 34.64 5.92
4972 5460 4.862092 CGCTCGCTCGCATGGTCT 62.862 66.667 0.00 0.00 0.00 3.85
4974 5462 1.006805 GCTCGCTCGCATGGTCTAT 60.007 57.895 0.00 0.00 0.00 1.98
4988 5476 1.975680 GGTCTATTATGGGGCGAAGGA 59.024 52.381 0.00 0.00 0.00 3.36
4994 5482 0.974010 TATGGGGCGAAGGACGAACT 60.974 55.000 0.00 0.00 45.77 3.01
5005 5493 1.206371 AGGACGAACTAATGGAACCCG 59.794 52.381 0.00 0.00 0.00 5.28
5008 5496 2.165030 GACGAACTAATGGAACCCGAGA 59.835 50.000 0.00 0.00 0.00 4.04
5021 5509 0.461339 CCCGAGATAAACCACCACCG 60.461 60.000 0.00 0.00 0.00 4.94
5059 5547 0.249699 TGTTGTCACTGTAGCGGTGG 60.250 55.000 0.00 0.00 40.76 4.61
5079 5567 2.100749 GGCACCTTGCTAACAAAGTTGT 59.899 45.455 0.00 0.00 44.28 3.32
5081 5569 3.551485 GCACCTTGCTAACAAAGTTGTTG 59.449 43.478 17.60 9.78 43.95 3.33
5106 5594 4.705023 GGCTGGTTAATTCTTCCTAGCAAA 59.295 41.667 0.00 0.00 31.85 3.68
5134 5622 2.439960 AAGAGGTGGTGGTGCGTCA 61.440 57.895 0.00 0.00 0.00 4.35
5152 5640 1.076777 AACCAGGTGTGCAAGCAGT 60.077 52.632 0.00 0.00 0.00 4.40
5154 5642 1.825191 CCAGGTGTGCAAGCAGTGT 60.825 57.895 0.00 0.00 0.00 3.55
5160 5648 1.024046 TGTGCAAGCAGTGTTGTCGT 61.024 50.000 0.00 0.00 0.00 4.34
5161 5649 0.098728 GTGCAAGCAGTGTTGTCGTT 59.901 50.000 0.00 0.00 0.00 3.85
5162 5650 1.329292 GTGCAAGCAGTGTTGTCGTTA 59.671 47.619 0.00 0.00 0.00 3.18
5167 5655 4.669197 GCAAGCAGTGTTGTCGTTATTAGG 60.669 45.833 0.00 0.00 0.00 2.69
5203 5691 3.689347 CACCCTGTCATTGAAGGATGAA 58.311 45.455 13.34 0.00 37.75 2.57
5213 5701 7.652909 TGTCATTGAAGGATGAATGTTTGAAAC 59.347 33.333 0.14 0.14 37.75 2.78
5283 5771 1.206849 TGTCTTGCATAGGCGATGACA 59.793 47.619 12.03 14.62 45.35 3.58
5322 5810 0.747255 TGGCTGAAGTCTATCGAGGC 59.253 55.000 0.00 0.00 0.00 4.70
5454 5943 4.294232 CTGCTCAATGTCGGTATCTACTG 58.706 47.826 0.00 0.00 0.00 2.74
5490 5979 1.048601 GGATCCTCCGATAGTTGGCA 58.951 55.000 3.84 0.00 0.00 4.92
5491 5980 1.001406 GGATCCTCCGATAGTTGGCAG 59.999 57.143 3.84 0.00 0.00 4.85
5496 5985 1.078497 CCGATAGTTGGCAGGTGCA 60.078 57.895 4.01 0.00 44.36 4.57
5529 6018 3.830755 TGTTGACCTAGGTAGTGTCCTTC 59.169 47.826 16.29 0.00 38.86 3.46
5540 6029 1.078759 GTGTCCTTCGTCAGCATCGG 61.079 60.000 0.00 0.00 0.00 4.18
5575 6064 1.507140 TAATGCCCGAGATGGAGGTT 58.493 50.000 0.00 0.00 42.00 3.50
5600 6089 1.529244 GTGGTGCTCAAGCCAAGGT 60.529 57.895 0.00 0.00 41.18 3.50
5601 6090 1.529010 TGGTGCTCAAGCCAAGGTG 60.529 57.895 0.00 0.00 41.18 4.00
5602 6091 1.529244 GGTGCTCAAGCCAAGGTGT 60.529 57.895 0.00 0.00 41.18 4.16
5603 6092 0.250727 GGTGCTCAAGCCAAGGTGTA 60.251 55.000 0.00 0.00 41.18 2.90
5604 6093 0.875059 GTGCTCAAGCCAAGGTGTAC 59.125 55.000 0.00 0.00 41.18 2.90
5606 6095 1.974957 TGCTCAAGCCAAGGTGTACTA 59.025 47.619 0.00 0.00 41.18 1.82
5607 6096 2.571653 TGCTCAAGCCAAGGTGTACTAT 59.428 45.455 0.00 0.00 41.18 2.12
5643 6132 3.585862 GTGTGTCTTGGATGATGTACGT 58.414 45.455 0.00 0.00 0.00 3.57
5655 6144 2.124122 GATGTACGTCATATGTGCGCA 58.876 47.619 5.66 5.66 36.83 6.09
5674 6163 4.380531 CGCAGTTATGTGGATGGAAGTAT 58.619 43.478 0.00 0.00 33.09 2.12
5703 6192 3.638160 ACATTTTGTCCATGCAAGTGACT 59.362 39.130 12.86 0.00 0.00 3.41
5728 6217 3.644884 TGTTTGTCGGTGTTGTTTTGT 57.355 38.095 0.00 0.00 0.00 2.83
5744 6233 5.502079 TGTTTTGTTAGTTGGAGGTCTGAA 58.498 37.500 0.00 0.00 0.00 3.02
5773 6262 1.494721 TCTTGCACCTCTTCCCACTTT 59.505 47.619 0.00 0.00 0.00 2.66
5834 6323 2.741878 CGGATTAGTGATGTGGTGTCCC 60.742 54.545 0.00 0.00 0.00 4.46
5836 6325 3.432326 GGATTAGTGATGTGGTGTCCCTC 60.432 52.174 0.00 0.00 0.00 4.30
5849 6338 2.995258 GTGTCCCTCGCGTTGTTATTTA 59.005 45.455 5.77 0.00 0.00 1.40
5927 6416 1.602311 GGCATTGGCTGAGAATCGAT 58.398 50.000 2.42 0.00 40.87 3.59
5934 6423 2.499693 TGGCTGAGAATCGATGGTTGTA 59.500 45.455 0.00 0.00 38.61 2.41
5937 6426 4.371786 GCTGAGAATCGATGGTTGTATCA 58.628 43.478 0.00 0.00 38.61 2.15
5956 6445 0.874390 ATTAGTGTGTTGTGCCTGCG 59.126 50.000 0.00 0.00 0.00 5.18
5957 6446 0.179070 TTAGTGTGTTGTGCCTGCGA 60.179 50.000 0.00 0.00 0.00 5.10
5965 6454 3.286751 GTGCCTGCGAGGTTGCAA 61.287 61.111 0.00 0.00 45.74 4.08
5972 6461 2.119457 CTGCGAGGTTGCAAAAGTTTC 58.881 47.619 0.00 0.00 45.74 2.78
5976 6465 2.529894 CGAGGTTGCAAAAGTTTCGTTG 59.470 45.455 0.00 0.00 0.00 4.10
5979 6468 3.057174 AGGTTGCAAAAGTTTCGTTGACA 60.057 39.130 0.00 0.00 0.00 3.58
5986 6475 5.574082 CAAAAGTTTCGTTGACATGTGGTA 58.426 37.500 1.15 0.00 0.00 3.25
6000 6489 4.753107 ACATGTGGTAAAACTAGTTGGACG 59.247 41.667 9.34 0.59 0.00 4.79
6006 6495 5.052481 GGTAAAACTAGTTGGACGTTGACT 58.948 41.667 9.34 0.00 0.00 3.41
6215 6704 3.966026 GAGACCTACACGCGCGCTT 62.966 63.158 32.58 18.79 0.00 4.68
6267 6814 1.003580 GGTTGTGGGATTGAGCTGAGA 59.996 52.381 0.00 0.00 0.00 3.27
6427 6993 1.623811 CCTGGCCCGCACTATATAGTT 59.376 52.381 12.87 0.00 33.46 2.24
6674 7268 0.103208 GCAACCTCATCCTCGACGAT 59.897 55.000 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 2.095461 CGTCACATCTTCCTCCTCAGA 58.905 52.381 0.00 0.00 0.00 3.27
102 115 1.000274 GGCTTCGTTGTCAAATGCCTT 60.000 47.619 6.84 0.00 36.32 4.35
142 156 0.461135 CCATATTGCCTGTGCCCAAC 59.539 55.000 0.00 0.00 36.33 3.77
143 157 0.687098 CCCATATTGCCTGTGCCCAA 60.687 55.000 0.00 0.00 36.33 4.12
244 380 3.440127 AGTTCTTCCTCTTCCTCTCCTG 58.560 50.000 0.00 0.00 0.00 3.86
247 395 4.345854 TGGTAGTTCTTCCTCTTCCTCTC 58.654 47.826 0.00 0.00 0.00 3.20
331 525 7.715249 TGGCAGTACAGATTATTAAGAACCATC 59.285 37.037 0.00 0.00 0.00 3.51
371 586 4.515944 ACGAAACAAATTACGGTTCATCCA 59.484 37.500 6.43 0.00 35.57 3.41
544 771 2.346803 CGCATATAGGTTAGCCGCATT 58.653 47.619 0.00 0.00 40.50 3.56
549 779 0.323629 TGCCCGCATATAGGTTAGCC 59.676 55.000 0.00 0.00 0.00 3.93
571 801 7.165485 ACAAACTACCATCTGTGCATACTTTA 58.835 34.615 0.00 0.00 0.00 1.85
575 805 5.523916 CCTACAAACTACCATCTGTGCATAC 59.476 44.000 0.00 0.00 0.00 2.39
580 810 3.935203 CAGCCTACAAACTACCATCTGTG 59.065 47.826 0.00 0.00 0.00 3.66
610 840 2.832838 TCTTAGATGGGTCTGGCTGAA 58.167 47.619 0.00 0.00 35.87 3.02
648 878 3.263489 TGGTTGCCCGTATCGATTTTA 57.737 42.857 1.71 0.00 0.00 1.52
658 888 2.337246 GGCGTATTTGGTTGCCCGT 61.337 57.895 0.00 0.00 41.70 5.28
679 910 3.056821 CCATGTTCCAGACGAAGACACTA 60.057 47.826 0.00 0.00 0.00 2.74
681 912 2.069273 CCATGTTCCAGACGAAGACAC 58.931 52.381 0.00 0.00 0.00 3.67
686 917 5.070001 AGAAATTTCCATGTTCCAGACGAA 58.930 37.500 14.61 0.00 0.00 3.85
687 918 4.651778 AGAAATTTCCATGTTCCAGACGA 58.348 39.130 14.61 0.00 0.00 4.20
688 919 4.455533 TGAGAAATTTCCATGTTCCAGACG 59.544 41.667 14.61 0.00 0.00 4.18
689 920 5.964958 TGAGAAATTTCCATGTTCCAGAC 57.035 39.130 14.61 0.00 0.00 3.51
690 921 5.419788 CCATGAGAAATTTCCATGTTCCAGA 59.580 40.000 28.59 6.95 35.72 3.86
691 922 5.419788 TCCATGAGAAATTTCCATGTTCCAG 59.580 40.000 28.59 20.28 35.72 3.86
692 923 5.331906 TCCATGAGAAATTTCCATGTTCCA 58.668 37.500 28.59 17.02 35.72 3.53
693 924 5.920193 TCCATGAGAAATTTCCATGTTCC 57.080 39.130 28.59 10.69 35.72 3.62
694 925 7.344095 AGATCCATGAGAAATTTCCATGTTC 57.656 36.000 28.59 25.35 35.72 3.18
695 926 8.689972 GTTAGATCCATGAGAAATTTCCATGTT 58.310 33.333 28.59 21.77 35.72 2.71
696 927 7.835682 TGTTAGATCCATGAGAAATTTCCATGT 59.164 33.333 28.59 19.94 35.72 3.21
697 928 8.229253 TGTTAGATCCATGAGAAATTTCCATG 57.771 34.615 26.50 26.50 36.49 3.66
698 929 7.504911 CCTGTTAGATCCATGAGAAATTTCCAT 59.495 37.037 14.61 13.84 0.00 3.41
699 930 6.830324 CCTGTTAGATCCATGAGAAATTTCCA 59.170 38.462 14.61 12.26 0.00 3.53
700 931 6.830838 ACCTGTTAGATCCATGAGAAATTTCC 59.169 38.462 14.61 7.09 0.00 3.13
701 932 7.872113 ACCTGTTAGATCCATGAGAAATTTC 57.128 36.000 10.33 10.33 0.00 2.17
702 933 8.552296 ACTACCTGTTAGATCCATGAGAAATTT 58.448 33.333 0.00 0.00 0.00 1.82
703 934 8.095452 ACTACCTGTTAGATCCATGAGAAATT 57.905 34.615 0.00 0.00 0.00 1.82
704 935 7.682787 ACTACCTGTTAGATCCATGAGAAAT 57.317 36.000 0.00 0.00 0.00 2.17
705 936 7.331026 CAACTACCTGTTAGATCCATGAGAAA 58.669 38.462 0.00 0.00 37.07 2.52
706 937 6.630413 GCAACTACCTGTTAGATCCATGAGAA 60.630 42.308 0.00 0.00 37.07 2.87
707 938 5.163405 GCAACTACCTGTTAGATCCATGAGA 60.163 44.000 0.00 0.00 37.07 3.27
708 939 5.053145 GCAACTACCTGTTAGATCCATGAG 58.947 45.833 0.00 0.00 37.07 2.90
709 940 4.716784 AGCAACTACCTGTTAGATCCATGA 59.283 41.667 0.00 0.00 37.07 3.07
710 941 4.813161 CAGCAACTACCTGTTAGATCCATG 59.187 45.833 0.00 0.00 37.07 3.66
711 942 4.471386 ACAGCAACTACCTGTTAGATCCAT 59.529 41.667 0.00 0.00 40.45 3.41
712 943 3.838317 ACAGCAACTACCTGTTAGATCCA 59.162 43.478 0.00 0.00 40.45 3.41
713 944 4.184629 CACAGCAACTACCTGTTAGATCC 58.815 47.826 0.00 0.00 41.34 3.36
714 945 3.619038 GCACAGCAACTACCTGTTAGATC 59.381 47.826 0.00 0.00 41.34 2.75
715 946 3.007940 TGCACAGCAACTACCTGTTAGAT 59.992 43.478 0.00 0.00 41.34 1.98
716 947 2.367241 TGCACAGCAACTACCTGTTAGA 59.633 45.455 0.00 0.00 41.34 2.10
717 948 2.766313 TGCACAGCAACTACCTGTTAG 58.234 47.619 0.00 0.00 41.34 2.34
718 949 2.920724 TGCACAGCAACTACCTGTTA 57.079 45.000 0.00 0.00 41.34 2.41
719 950 2.051334 TTGCACAGCAACTACCTGTT 57.949 45.000 0.00 0.00 43.99 3.16
720 951 3.798794 TTGCACAGCAACTACCTGT 57.201 47.368 0.00 0.00 43.99 4.00
728 959 3.329670 CGAACCCGAATTGCACAGCAA 62.330 52.381 6.90 6.90 45.14 3.91
729 960 1.851021 CGAACCCGAATTGCACAGCA 61.851 55.000 0.00 0.00 38.22 4.41
730 961 1.154225 CGAACCCGAATTGCACAGC 60.154 57.895 0.00 0.00 38.22 4.40
731 962 1.501741 CCGAACCCGAATTGCACAG 59.498 57.895 0.00 0.00 38.22 3.66
732 963 1.969064 CCCGAACCCGAATTGCACA 60.969 57.895 0.00 0.00 38.22 4.57
733 964 1.238625 TTCCCGAACCCGAATTGCAC 61.239 55.000 0.00 0.00 38.22 4.57
734 965 0.537600 TTTCCCGAACCCGAATTGCA 60.538 50.000 0.00 0.00 38.22 4.08
735 966 0.170339 CTTTCCCGAACCCGAATTGC 59.830 55.000 0.00 0.00 38.22 3.56
736 967 1.530323 ACTTTCCCGAACCCGAATTG 58.470 50.000 0.00 0.00 38.22 2.32
737 968 2.156917 GAACTTTCCCGAACCCGAATT 58.843 47.619 0.00 0.00 38.22 2.17
738 969 1.072648 TGAACTTTCCCGAACCCGAAT 59.927 47.619 0.00 0.00 38.22 3.34
739 970 0.469070 TGAACTTTCCCGAACCCGAA 59.531 50.000 0.00 0.00 38.22 4.30
740 971 0.034337 CTGAACTTTCCCGAACCCGA 59.966 55.000 0.00 0.00 38.22 5.14
741 972 1.574702 GCTGAACTTTCCCGAACCCG 61.575 60.000 0.00 0.00 0.00 5.28
742 973 1.574702 CGCTGAACTTTCCCGAACCC 61.575 60.000 0.00 0.00 0.00 4.11
748 979 1.530323 TTTAGCCGCTGAACTTTCCC 58.470 50.000 2.16 0.00 0.00 3.97
749 980 3.850122 ATTTTAGCCGCTGAACTTTCC 57.150 42.857 2.16 0.00 0.00 3.13
759 990 5.231357 CCGAAATTTAAGGAATTTTAGCCGC 59.769 40.000 6.36 0.00 45.54 6.53
782 1014 4.513318 GGAGATCGATGTGGATTTTCTTCC 59.487 45.833 0.54 0.00 36.24 3.46
794 1026 3.066900 CGACTTGGTTAGGAGATCGATGT 59.933 47.826 0.54 0.00 0.00 3.06
806 1038 3.408020 GCGCGTGCGACTTGGTTA 61.408 61.111 19.66 0.00 42.83 2.85
867 1099 4.256920 GCGAGGCTGACATATGGATTAAT 58.743 43.478 7.80 0.00 0.00 1.40
932 1169 4.356405 ACTGATGGTGTCATTGTCAAGA 57.644 40.909 0.00 0.00 35.97 3.02
979 1216 7.252678 AGGGATAATATCTGAGAGCTTACCTT 58.747 38.462 0.00 0.00 0.00 3.50
980 1217 6.810500 AGGGATAATATCTGAGAGCTTACCT 58.189 40.000 0.00 0.00 0.00 3.08
981 1218 7.327214 CAAGGGATAATATCTGAGAGCTTACC 58.673 42.308 0.00 0.00 0.00 2.85
1043 1285 6.597832 CTTAAACAGGAGAAAGGAGAGAGA 57.402 41.667 0.00 0.00 0.00 3.10
1638 1925 2.146061 GGCAGAGGATGAGGGGGAG 61.146 68.421 0.00 0.00 0.00 4.30
1641 1928 2.450320 CCTGGCAGAGGATGAGGGG 61.450 68.421 17.94 0.00 46.33 4.79
1642 1929 2.450320 CCCTGGCAGAGGATGAGGG 61.450 68.421 17.94 2.41 46.33 4.30
1644 1931 2.042404 GCTCCCTGGCAGAGGATGAG 62.042 65.000 17.94 13.55 46.33 2.90
1647 1934 2.771762 GGCTCCCTGGCAGAGGAT 60.772 66.667 17.94 0.00 46.33 3.24
1778 2066 5.997746 TGCAATTTAGGAATAGGAAGATCCG 59.002 40.000 0.00 0.00 42.75 4.18
1808 2096 1.390463 CGCTGTAGCCTTCTTCGAAAC 59.610 52.381 0.00 0.00 37.91 2.78
1825 2113 4.082517 CCTACAGTATATGCATCTGTCGCT 60.083 45.833 19.52 2.38 41.66 4.93
1832 2120 6.072064 ACGGTCTAACCTACAGTATATGCATC 60.072 42.308 0.19 0.00 35.66 3.91
1866 2154 0.871722 TGTATCCAACTTGTGCACGC 59.128 50.000 13.13 0.00 0.00 5.34
1912 2212 5.641636 ACAAACAAACAAATGGGTGACTTTC 59.358 36.000 0.00 0.00 0.00 2.62
2016 2316 9.615660 TTCTGTATATGGATTAGTCAACCCTAT 57.384 33.333 0.00 0.00 0.00 2.57
2017 2317 9.090103 CTTCTGTATATGGATTAGTCAACCCTA 57.910 37.037 0.00 0.00 0.00 3.53
2018 2318 7.789831 TCTTCTGTATATGGATTAGTCAACCCT 59.210 37.037 0.00 0.00 0.00 4.34
2019 2319 7.963532 TCTTCTGTATATGGATTAGTCAACCC 58.036 38.462 0.00 0.00 0.00 4.11
2023 2323 9.379770 TCCATTCTTCTGTATATGGATTAGTCA 57.620 33.333 0.00 0.00 41.10 3.41
2028 2328 9.136323 GGTTTTCCATTCTTCTGTATATGGATT 57.864 33.333 0.00 0.00 44.32 3.01
2029 2329 7.725844 GGGTTTTCCATTCTTCTGTATATGGAT 59.274 37.037 0.00 0.00 44.32 3.41
2030 2330 7.060421 GGGTTTTCCATTCTTCTGTATATGGA 58.940 38.462 0.00 0.00 43.51 3.41
2031 2331 7.062957 AGGGTTTTCCATTCTTCTGTATATGG 58.937 38.462 0.00 0.00 42.91 2.74
2032 2332 9.799106 ATAGGGTTTTCCATTCTTCTGTATATG 57.201 33.333 0.00 0.00 42.91 1.78
2034 2334 9.847224 GAATAGGGTTTTCCATTCTTCTGTATA 57.153 33.333 0.00 0.00 42.91 1.47
2035 2335 7.499232 CGAATAGGGTTTTCCATTCTTCTGTAT 59.501 37.037 0.00 0.00 42.91 2.29
2036 2336 6.821665 CGAATAGGGTTTTCCATTCTTCTGTA 59.178 38.462 0.00 0.00 42.91 2.74
2037 2337 5.648092 CGAATAGGGTTTTCCATTCTTCTGT 59.352 40.000 0.00 0.00 42.91 3.41
2038 2338 5.449177 GCGAATAGGGTTTTCCATTCTTCTG 60.449 44.000 0.00 0.00 42.91 3.02
2039 2339 4.640647 GCGAATAGGGTTTTCCATTCTTCT 59.359 41.667 0.00 0.00 42.91 2.85
2040 2340 4.640647 AGCGAATAGGGTTTTCCATTCTTC 59.359 41.667 0.00 0.00 42.91 2.87
2041 2341 4.399303 CAGCGAATAGGGTTTTCCATTCTT 59.601 41.667 0.00 0.00 42.91 2.52
2042 2342 3.947834 CAGCGAATAGGGTTTTCCATTCT 59.052 43.478 0.00 0.00 42.91 2.40
2043 2343 3.489229 GCAGCGAATAGGGTTTTCCATTC 60.489 47.826 0.00 0.00 42.91 2.67
2044 2344 2.427095 GCAGCGAATAGGGTTTTCCATT 59.573 45.455 0.00 0.00 42.91 3.16
2045 2345 2.024414 GCAGCGAATAGGGTTTTCCAT 58.976 47.619 0.00 0.00 42.91 3.41
2046 2346 1.271652 TGCAGCGAATAGGGTTTTCCA 60.272 47.619 0.00 0.00 42.91 3.53
2047 2347 1.132453 GTGCAGCGAATAGGGTTTTCC 59.868 52.381 0.00 0.00 39.75 3.13
2048 2348 1.810151 TGTGCAGCGAATAGGGTTTTC 59.190 47.619 0.00 0.00 0.00 2.29
2049 2349 1.904287 TGTGCAGCGAATAGGGTTTT 58.096 45.000 0.00 0.00 0.00 2.43
2050 2350 2.128771 ATGTGCAGCGAATAGGGTTT 57.871 45.000 0.00 0.00 0.00 3.27
2051 2351 1.745087 CAATGTGCAGCGAATAGGGTT 59.255 47.619 0.00 0.00 0.00 4.11
2052 2352 1.382522 CAATGTGCAGCGAATAGGGT 58.617 50.000 0.00 0.00 0.00 4.34
2053 2353 0.029834 GCAATGTGCAGCGAATAGGG 59.970 55.000 0.00 0.00 44.26 3.53
2054 2354 3.539253 GCAATGTGCAGCGAATAGG 57.461 52.632 0.00 0.00 44.26 2.57
2055 2355 1.858798 GCAGCAATGTGCAGCGAATAG 60.859 52.381 1.75 0.00 45.45 1.73
2056 2356 0.099259 GCAGCAATGTGCAGCGAATA 59.901 50.000 1.75 0.00 45.45 1.75
2057 2357 1.153901 GCAGCAATGTGCAGCGAAT 60.154 52.632 1.75 0.00 45.45 3.34
2058 2358 2.256158 GCAGCAATGTGCAGCGAA 59.744 55.556 1.75 0.00 45.45 4.70
2064 2364 2.595536 CGACTATTTTGCAGCAATGTGC 59.404 45.455 9.12 0.00 45.46 4.57
2065 2365 3.119884 TCCGACTATTTTGCAGCAATGTG 60.120 43.478 9.12 2.76 0.00 3.21
2066 2366 3.081061 TCCGACTATTTTGCAGCAATGT 58.919 40.909 9.12 6.02 0.00 2.71
2067 2367 3.688272 CTCCGACTATTTTGCAGCAATG 58.312 45.455 9.12 2.76 0.00 2.82
2068 2368 2.098117 GCTCCGACTATTTTGCAGCAAT 59.902 45.455 9.12 0.00 0.00 3.56
2069 2369 1.468520 GCTCCGACTATTTTGCAGCAA 59.531 47.619 2.83 2.83 0.00 3.91
2070 2370 1.086696 GCTCCGACTATTTTGCAGCA 58.913 50.000 0.00 0.00 0.00 4.41
2071 2371 1.373570 AGCTCCGACTATTTTGCAGC 58.626 50.000 0.00 0.00 0.00 5.25
2072 2372 3.751621 CAAAGCTCCGACTATTTTGCAG 58.248 45.455 0.00 0.00 0.00 4.41
2073 2373 3.829886 CAAAGCTCCGACTATTTTGCA 57.170 42.857 0.00 0.00 0.00 4.08
2074 2374 2.519963 GCAAAGCTCCGACTATTTTGC 58.480 47.619 4.74 4.74 44.33 3.68
2075 2375 3.058293 TGTGCAAAGCTCCGACTATTTTG 60.058 43.478 0.00 0.00 33.18 2.44
2076 2376 3.146066 TGTGCAAAGCTCCGACTATTTT 58.854 40.909 0.00 0.00 0.00 1.82
2077 2377 2.778299 TGTGCAAAGCTCCGACTATTT 58.222 42.857 0.00 0.00 0.00 1.40
2078 2378 2.472695 TGTGCAAAGCTCCGACTATT 57.527 45.000 0.00 0.00 0.00 1.73
2079 2379 2.350522 CTTGTGCAAAGCTCCGACTAT 58.649 47.619 0.00 0.00 0.00 2.12
2080 2380 1.608025 CCTTGTGCAAAGCTCCGACTA 60.608 52.381 0.00 0.00 0.00 2.59
2081 2381 0.886490 CCTTGTGCAAAGCTCCGACT 60.886 55.000 0.00 0.00 0.00 4.18
2082 2382 1.576421 CCTTGTGCAAAGCTCCGAC 59.424 57.895 0.00 0.00 0.00 4.79
2083 2383 2.260869 GCCTTGTGCAAAGCTCCGA 61.261 57.895 0.00 0.00 40.77 4.55
2084 2384 2.256461 GCCTTGTGCAAAGCTCCG 59.744 61.111 0.00 0.00 40.77 4.63
2085 2385 2.256461 CGCCTTGTGCAAAGCTCC 59.744 61.111 0.00 0.00 41.33 4.70
2086 2386 2.429739 GCGCCTTGTGCAAAGCTC 60.430 61.111 0.00 0.00 41.33 4.09
2087 2387 3.982241 GGCGCCTTGTGCAAAGCT 61.982 61.111 22.15 0.00 41.25 3.74
2089 2389 3.604667 TGGGCGCCTTGTGCAAAG 61.605 61.111 28.56 0.00 41.25 2.77
2090 2390 3.910490 GTGGGCGCCTTGTGCAAA 61.910 61.111 28.56 0.00 41.25 3.68
2093 2393 3.438017 TTTTGTGGGCGCCTTGTGC 62.438 57.895 28.56 9.87 38.45 4.57
2094 2394 1.300080 CTTTTGTGGGCGCCTTGTG 60.300 57.895 28.56 6.65 0.00 3.33
2095 2395 2.498056 CCTTTTGTGGGCGCCTTGT 61.498 57.895 28.56 0.00 0.00 3.16
2096 2396 2.339712 CCTTTTGTGGGCGCCTTG 59.660 61.111 28.56 8.46 0.00 3.61
2097 2397 2.917227 CCCTTTTGTGGGCGCCTT 60.917 61.111 28.56 0.00 40.84 4.35
2105 2405 3.683937 CTGGCCGGCCCTTTTGTG 61.684 66.667 41.75 18.53 34.56 3.33
2106 2406 3.749284 AACTGGCCGGCCCTTTTGT 62.749 57.895 41.75 27.09 34.56 2.83
2107 2407 2.917227 AACTGGCCGGCCCTTTTG 60.917 61.111 41.75 26.46 34.56 2.44
2108 2408 2.600470 GAACTGGCCGGCCCTTTT 60.600 61.111 41.75 30.12 34.56 2.27
2109 2409 3.569200 GAGAACTGGCCGGCCCTTT 62.569 63.158 41.75 32.72 34.56 3.11
2110 2410 4.035102 GAGAACTGGCCGGCCCTT 62.035 66.667 41.75 31.45 34.56 3.95
2113 2413 4.699522 AACGAGAACTGGCCGGCC 62.700 66.667 39.40 39.40 0.00 6.13
2114 2414 2.183858 GAAAACGAGAACTGGCCGGC 62.184 60.000 21.18 21.18 0.00 6.13
2115 2415 0.882927 TGAAAACGAGAACTGGCCGG 60.883 55.000 11.02 11.02 0.00 6.13
2116 2416 1.156736 ATGAAAACGAGAACTGGCCG 58.843 50.000 0.00 0.00 0.00 6.13
2117 2417 4.759516 TTTATGAAAACGAGAACTGGCC 57.240 40.909 0.00 0.00 0.00 5.36
2118 2418 6.837992 TGTATTTATGAAAACGAGAACTGGC 58.162 36.000 0.00 0.00 0.00 4.85
2119 2419 9.840427 ATTTGTATTTATGAAAACGAGAACTGG 57.160 29.630 0.00 0.00 0.00 4.00
2204 2504 7.341805 TGAGAAATTTGGAACATTTTTGGGAA 58.658 30.769 0.00 0.00 39.30 3.97
2206 2506 7.748691 ATGAGAAATTTGGAACATTTTTGGG 57.251 32.000 0.00 0.00 39.30 4.12
2362 2664 7.525759 ACAATTTTTGAAAGCACGAACATTTT 58.474 26.923 0.00 0.00 0.00 1.82
2426 2728 4.932200 ACGCCAACTGTTTTTGAATTTTCA 59.068 33.333 0.00 0.00 34.92 2.69
2427 2729 5.463499 ACGCCAACTGTTTTTGAATTTTC 57.537 34.783 0.00 0.00 0.00 2.29
2434 2736 6.861055 ACATTTCTATACGCCAACTGTTTTTG 59.139 34.615 0.00 0.00 0.00 2.44
2435 2737 6.977213 ACATTTCTATACGCCAACTGTTTTT 58.023 32.000 0.00 0.00 0.00 1.94
2440 2742 5.560148 GTGAACATTTCTATACGCCAACTG 58.440 41.667 0.00 0.00 0.00 3.16
2441 2743 4.328983 CGTGAACATTTCTATACGCCAACT 59.671 41.667 0.00 0.00 0.00 3.16
2443 2745 4.247258 ACGTGAACATTTCTATACGCCAA 58.753 39.130 0.00 0.00 32.02 4.52
2457 2759 7.313646 TGGAACAAATTTTAGAAACGTGAACA 58.686 30.769 0.00 0.00 31.92 3.18
2458 2760 7.743520 TGGAACAAATTTTAGAAACGTGAAC 57.256 32.000 0.00 0.00 31.92 3.18
2485 2789 9.804758 TTGAAAAACGGTAACATGTCTTAAAAT 57.195 25.926 0.00 0.00 0.00 1.82
2492 2796 7.901002 ACAATTTTGAAAAACGGTAACATGTC 58.099 30.769 0.00 0.00 0.00 3.06
2494 2798 8.383619 TGAACAATTTTGAAAAACGGTAACATG 58.616 29.630 0.00 0.00 0.00 3.21
2500 2804 6.425417 ACTTGTGAACAATTTTGAAAAACGGT 59.575 30.769 0.00 0.00 35.02 4.83
2503 2807 9.657121 TTGAACTTGTGAACAATTTTGAAAAAC 57.343 25.926 0.00 0.00 35.02 2.43
2534 2838 9.029243 GTGTGAACATTTATGAAAACATGAACA 57.971 29.630 0.00 0.00 0.00 3.18
2535 2839 9.248291 AGTGTGAACATTTATGAAAACATGAAC 57.752 29.630 0.00 0.00 0.00 3.18
2537 2841 9.814899 AAAGTGTGAACATTTATGAAAACATGA 57.185 25.926 0.00 0.00 0.00 3.07
2552 2856 7.566760 ACAACATATCTTGAAAGTGTGAACA 57.433 32.000 0.00 0.00 0.00 3.18
2553 2857 7.915397 ACAACAACATATCTTGAAAGTGTGAAC 59.085 33.333 0.00 0.00 0.00 3.18
2575 2879 5.096849 ACATGAACACGGTTTGTAAACAAC 58.903 37.500 0.00 0.00 37.51 3.32
2578 2882 7.737525 TTAAACATGAACACGGTTTGTAAAC 57.262 32.000 0.00 0.00 37.51 2.01
2766 3072 6.151691 GCACTGCAAACTCAGATTTGAAATA 58.848 36.000 2.50 0.00 41.28 1.40
2772 3078 1.949525 ACGCACTGCAAACTCAGATTT 59.050 42.857 1.11 0.00 37.51 2.17
2781 3087 4.300189 ACATTTAAGAACGCACTGCAAA 57.700 36.364 1.11 0.00 0.00 3.68
2792 3098 3.386078 TGGCCAGTGCAAACATTTAAGAA 59.614 39.130 0.00 0.00 40.13 2.52
2801 3107 1.885887 TGACTAATGGCCAGTGCAAAC 59.114 47.619 17.71 3.49 40.13 2.93
2804 3110 0.692476 AGTGACTAATGGCCAGTGCA 59.308 50.000 17.71 8.56 40.13 4.57
2823 3129 3.535629 CTCGAACCAGTGCCTGCCA 62.536 63.158 0.00 0.00 0.00 4.92
2824 3130 2.743928 CTCGAACCAGTGCCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
2825 3131 1.598130 AACTCGAACCAGTGCCTGC 60.598 57.895 0.00 0.00 0.00 4.85
2826 3132 1.845809 GCAACTCGAACCAGTGCCTG 61.846 60.000 0.00 0.00 0.00 4.85
2832 3138 1.354040 CAGCTAGCAACTCGAACCAG 58.646 55.000 18.83 0.00 0.00 4.00
2850 3156 2.765122 TCAAAGACATGATCACGTGCA 58.235 42.857 11.67 4.24 36.58 4.57
2859 3165 4.257267 ACTCACGACATCAAAGACATGA 57.743 40.909 0.00 0.00 0.00 3.07
2874 3180 2.529090 GCGGTTAAGTATCGAACTCACG 59.471 50.000 0.00 0.15 37.50 4.35
2892 3198 5.968387 AGAATCTAAAAATAGTGACGCGG 57.032 39.130 12.47 0.00 0.00 6.46
2899 3205 7.222224 CCGCACGAGTAAGAATCTAAAAATAGT 59.778 37.037 0.00 0.00 0.00 2.12
2900 3206 7.222224 ACCGCACGAGTAAGAATCTAAAAATAG 59.778 37.037 0.00 0.00 0.00 1.73
2913 3219 2.660236 GTGTTTCTACCGCACGAGTAAG 59.340 50.000 0.00 0.00 0.00 2.34
2920 3226 2.353579 ACAACTTGTGTTTCTACCGCAC 59.646 45.455 0.00 0.00 37.01 5.34
2964 3270 1.732259 CACAACAGTTCGTATCTGGGC 59.268 52.381 8.47 0.00 37.25 5.36
2965 3271 2.736721 CACACAACAGTTCGTATCTGGG 59.263 50.000 8.47 4.14 37.25 4.45
2966 3272 3.390135 ACACACAACAGTTCGTATCTGG 58.610 45.455 8.47 0.00 37.25 3.86
2967 3273 3.428870 GGACACACAACAGTTCGTATCTG 59.571 47.826 0.00 0.00 38.68 2.90
2968 3274 3.554337 GGGACACACAACAGTTCGTATCT 60.554 47.826 0.00 0.00 0.00 1.98
2970 3276 2.103432 TGGGACACACAACAGTTCGTAT 59.897 45.455 0.00 0.00 0.00 3.06
2971 3277 1.481363 TGGGACACACAACAGTTCGTA 59.519 47.619 0.00 0.00 0.00 3.43
2972 3278 0.250793 TGGGACACACAACAGTTCGT 59.749 50.000 0.00 0.00 0.00 3.85
2973 3279 3.073086 TGGGACACACAACAGTTCG 57.927 52.632 0.00 0.00 0.00 3.95
3241 3548 8.447787 AATACGTGAGATGCATTTTACAAAAC 57.552 30.769 11.88 0.00 0.00 2.43
3257 3564 9.302345 ACATCAGTTAGAACAATAATACGTGAG 57.698 33.333 0.00 0.00 0.00 3.51
3477 3784 8.613060 ACACAATATCTCACAATATTGCCTAG 57.387 34.615 15.48 10.07 46.55 3.02
3479 3786 7.173907 GCTACACAATATCTCACAATATTGCCT 59.826 37.037 15.48 0.00 46.55 4.75
3517 3824 7.520798 AGATTTGGATTGCCACATATCTCTAA 58.479 34.615 0.00 0.00 45.94 2.10
3530 3837 4.202441 TCTTGCCTCTAGATTTGGATTGC 58.798 43.478 0.73 0.00 0.00 3.56
3555 3862 6.798959 CGGTCAGAGAATGAAAAGAAAACATC 59.201 38.462 0.00 0.00 40.43 3.06
3588 3896 8.845227 TGCAGACACAAGTTCAAATAAGATTTA 58.155 29.630 0.00 0.00 0.00 1.40
3625 3933 4.627284 TTTCCAAGAATGTAACCCTCGA 57.373 40.909 0.00 0.00 0.00 4.04
3662 3970 5.878406 AGGTTGTTGGAGTATCTAGATGG 57.122 43.478 15.79 0.00 33.73 3.51
3707 4015 2.099405 CGGCAACTCCCCAAACATATT 58.901 47.619 0.00 0.00 0.00 1.28
3708 4016 1.283613 TCGGCAACTCCCCAAACATAT 59.716 47.619 0.00 0.00 0.00 1.78
3733 4041 7.369803 TCAATCTTTGATGACTCTTTACTGC 57.630 36.000 0.00 0.00 34.08 4.40
3763 4071 9.965902 ATACATCTTTCTTGGAACAGTAAATCT 57.034 29.630 0.00 0.00 42.39 2.40
3810 4161 9.836864 ATAGTTATGAGTGCATTCTATGTCAAA 57.163 29.630 10.82 0.00 35.94 2.69
3910 4276 3.500448 TGGTTGTGGAAATGTGCTAGA 57.500 42.857 0.00 0.00 0.00 2.43
3949 4315 4.837860 ACAATTTTTATGGGCAACTCTGGA 59.162 37.500 0.00 0.00 0.00 3.86
3951 4317 6.686630 TGTACAATTTTTATGGGCAACTCTG 58.313 36.000 0.00 0.00 0.00 3.35
3953 4319 8.442384 CAAATGTACAATTTTTATGGGCAACTC 58.558 33.333 0.00 0.00 0.00 3.01
4080 4447 7.699709 TCACCCCTAATCAATCAAGGTTATA 57.300 36.000 0.00 0.00 0.00 0.98
4096 4463 3.951563 AGCAGCATAATTTCACCCCTA 57.048 42.857 0.00 0.00 0.00 3.53
4136 4504 9.755804 TCATGATAATGCTTCTCTTACTACTTG 57.244 33.333 0.00 0.00 0.00 3.16
4184 4552 1.628846 TCCTCTAGCACAAAAGTCCCC 59.371 52.381 0.00 0.00 0.00 4.81
4204 4572 6.012245 TCTGGCATGATAGATGGGTTAATCAT 60.012 38.462 0.00 0.00 39.14 2.45
4207 4575 5.848286 TCTGGCATGATAGATGGGTTAAT 57.152 39.130 0.00 0.00 0.00 1.40
4209 4577 5.645056 TTTCTGGCATGATAGATGGGTTA 57.355 39.130 0.00 0.00 0.00 2.85
4231 4599 4.501915 CCAACATCATGCCACTCTGTTTTT 60.502 41.667 0.00 0.00 0.00 1.94
4245 4613 2.683152 GCCTCTTGCTCTCCAACATCAT 60.683 50.000 0.00 0.00 36.87 2.45
4323 4691 4.082679 ACACACACGAAAAAGGCAAACTAA 60.083 37.500 0.00 0.00 0.00 2.24
4329 4697 1.135546 CACACACACACGAAAAAGGCA 60.136 47.619 0.00 0.00 0.00 4.75
4336 4704 0.793250 CACACACACACACACACGAA 59.207 50.000 0.00 0.00 0.00 3.85
4347 4715 3.407698 TCTCTCTCTCTCTCACACACAC 58.592 50.000 0.00 0.00 0.00 3.82
4348 4716 3.326297 TCTCTCTCTCTCTCTCACACACA 59.674 47.826 0.00 0.00 0.00 3.72
4350 4718 3.837731 TCTCTCTCTCTCTCTCTCACACA 59.162 47.826 0.00 0.00 0.00 3.72
4352 4720 4.352893 TCTCTCTCTCTCTCTCTCTCACA 58.647 47.826 0.00 0.00 0.00 3.58
4354 4722 3.963374 CCTCTCTCTCTCTCTCTCTCTCA 59.037 52.174 0.00 0.00 0.00 3.27
4355 4723 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
4356 4724 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
4357 4725 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
4358 4726 3.312890 CTCCCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
4359 4727 2.370189 CCTCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
4360 4728 2.412591 CCTCCCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
4361 4729 1.421646 CCCTCCCTCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
4362 4730 1.522900 CCCTCCCTCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
4363 4731 0.478507 CCCCTCCCTCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
4364 4732 0.998945 CCCCCTCCCTCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
4365 4733 1.293683 ACCCCCTCCCTCTCTCTCTC 61.294 65.000 0.00 0.00 0.00 3.20
4366 4734 0.048117 TACCCCCTCCCTCTCTCTCT 59.952 60.000 0.00 0.00 0.00 3.10
4367 4735 1.163408 ATACCCCCTCCCTCTCTCTC 58.837 60.000 0.00 0.00 0.00 3.20
4368 4736 1.221781 CAATACCCCCTCCCTCTCTCT 59.778 57.143 0.00 0.00 0.00 3.10
4369 4737 1.062044 ACAATACCCCCTCCCTCTCTC 60.062 57.143 0.00 0.00 0.00 3.20
4370 4738 1.027815 ACAATACCCCCTCCCTCTCT 58.972 55.000 0.00 0.00 0.00 3.10
4371 4739 2.789323 TACAATACCCCCTCCCTCTC 57.211 55.000 0.00 0.00 0.00 3.20
4372 4740 3.745678 ATTACAATACCCCCTCCCTCT 57.254 47.619 0.00 0.00 0.00 3.69
4373 4741 4.850386 ACATATTACAATACCCCCTCCCTC 59.150 45.833 0.00 0.00 0.00 4.30
4374 4742 4.851528 ACATATTACAATACCCCCTCCCT 58.148 43.478 0.00 0.00 0.00 4.20
4375 4743 5.594199 AACATATTACAATACCCCCTCCC 57.406 43.478 0.00 0.00 0.00 4.30
4376 4744 6.008331 GGAAACATATTACAATACCCCCTCC 58.992 44.000 0.00 0.00 0.00 4.30
4377 4745 6.008331 GGGAAACATATTACAATACCCCCTC 58.992 44.000 0.00 0.00 0.00 4.30
4378 4746 5.457052 CGGGAAACATATTACAATACCCCCT 60.457 44.000 0.00 0.00 0.00 4.79
4379 4747 4.763279 CGGGAAACATATTACAATACCCCC 59.237 45.833 0.00 0.00 0.00 5.40
4380 4748 5.623169 TCGGGAAACATATTACAATACCCC 58.377 41.667 0.00 0.00 0.00 4.95
4381 4749 7.754851 ATTCGGGAAACATATTACAATACCC 57.245 36.000 0.00 0.00 0.00 3.69
4402 4770 3.194968 TCCTCCGTGGAGTGAACTTATTC 59.805 47.826 14.57 0.00 40.56 1.75
4418 4900 3.305471 GCTACAATAAGGCTAGTCCTCCG 60.305 52.174 6.23 0.06 46.94 4.63
4425 4907 9.929180 TTCATATAAGTGCTACAATAAGGCTAG 57.071 33.333 0.00 0.00 0.00 3.42
4488 4971 6.384342 TTCAGAGAGGACTAGTAGTACCAA 57.616 41.667 9.04 0.00 25.63 3.67
4490 4973 7.885009 AAATTCAGAGAGGACTAGTAGTACC 57.115 40.000 9.04 9.34 25.63 3.34
4496 4979 6.726764 ACACCTTAAATTCAGAGAGGACTAGT 59.273 38.462 0.00 0.00 0.00 2.57
4515 4998 4.497291 TGGAACAAAGTGTCTACACCTT 57.503 40.909 9.57 0.44 41.51 3.50
4607 5090 2.754946 TAGTTGTGGTGGAACGGATC 57.245 50.000 0.00 0.00 38.12 3.36
4691 5174 4.058817 CAACCTTTCTATCCTACGATGGC 58.941 47.826 0.00 0.00 0.00 4.40
4697 5180 4.162509 AGCTGGTCAACCTTTCTATCCTAC 59.837 45.833 0.10 0.00 36.82 3.18
4855 5342 6.762187 AGAGAGATAAATCAGCTGACACAATG 59.238 38.462 20.97 0.00 0.00 2.82
4856 5343 6.887013 AGAGAGATAAATCAGCTGACACAAT 58.113 36.000 20.97 10.38 0.00 2.71
4895 5383 8.030692 ACATGGTTGTGATGTTAGATCATTTTG 58.969 33.333 0.00 0.00 33.85 2.44
4938 5426 2.103042 CGCTCGGGAGGCTTCTTTG 61.103 63.158 0.00 0.00 0.00 2.77
4942 5430 4.882396 GAGCGCTCGGGAGGCTTC 62.882 72.222 23.61 0.00 35.89 3.86
4957 5445 2.706555 TAATAGACCATGCGAGCGAG 57.293 50.000 0.00 0.00 0.00 5.03
4972 5460 1.707106 TCGTCCTTCGCCCCATAATA 58.293 50.000 0.00 0.00 39.67 0.98
4974 5462 0.108041 GTTCGTCCTTCGCCCCATAA 60.108 55.000 0.00 0.00 39.67 1.90
4988 5476 2.173519 TCTCGGGTTCCATTAGTTCGT 58.826 47.619 0.00 0.00 0.00 3.85
4994 5482 4.384427 GGTGGTTTATCTCGGGTTCCATTA 60.384 45.833 0.00 0.00 0.00 1.90
5005 5493 2.754946 TGTCGGTGGTGGTTTATCTC 57.245 50.000 0.00 0.00 0.00 2.75
5008 5496 2.442413 CCATTGTCGGTGGTGGTTTAT 58.558 47.619 0.00 0.00 31.96 1.40
5021 5509 0.036306 AACGAGGGGACACCATTGTC 59.964 55.000 0.00 0.00 44.18 3.18
5059 5547 3.436700 ACAACTTTGTTAGCAAGGTGC 57.563 42.857 7.82 0.00 42.88 5.01
5079 5567 2.381961 AGGAAGAATTAACCAGCCCCAA 59.618 45.455 0.00 0.00 0.00 4.12
5081 5569 2.828661 AGGAAGAATTAACCAGCCCC 57.171 50.000 0.00 0.00 0.00 5.80
5106 5594 4.340950 CACCACCACCTCTTGTACAAAATT 59.659 41.667 10.03 0.00 0.00 1.82
5134 5622 1.076777 ACTGCTTGCACACCTGGTT 60.077 52.632 0.00 0.00 0.00 3.67
5152 5640 3.965379 TGCCTCCTAATAACGACAACA 57.035 42.857 0.00 0.00 0.00 3.33
5154 5642 6.540914 CCTTTTATGCCTCCTAATAACGACAA 59.459 38.462 0.00 0.00 0.00 3.18
5160 5648 4.169068 TGCCCCTTTTATGCCTCCTAATAA 59.831 41.667 0.00 0.00 0.00 1.40
5161 5649 3.724738 TGCCCCTTTTATGCCTCCTAATA 59.275 43.478 0.00 0.00 0.00 0.98
5162 5650 2.517980 TGCCCCTTTTATGCCTCCTAAT 59.482 45.455 0.00 0.00 0.00 1.73
5167 5655 1.043116 GGGTGCCCCTTTTATGCCTC 61.043 60.000 3.16 0.00 41.34 4.70
5203 5691 4.712122 AACTCACCAACGTTTCAAACAT 57.288 36.364 0.00 0.00 0.00 2.71
5213 5701 3.305064 CCACCCAAAATAACTCACCAACG 60.305 47.826 0.00 0.00 0.00 4.10
5283 5771 4.139786 CCATTGTCATGCCTTATGCTAGT 58.860 43.478 0.00 0.00 42.00 2.57
5296 5784 4.100035 TCGATAGACTTCAGCCATTGTCAT 59.900 41.667 0.00 0.00 42.67 3.06
5302 5790 1.342819 GCCTCGATAGACTTCAGCCAT 59.657 52.381 0.00 0.00 42.67 4.40
5307 5795 0.382158 CTGCGCCTCGATAGACTTCA 59.618 55.000 4.18 0.00 42.67 3.02
5308 5796 0.663688 TCTGCGCCTCGATAGACTTC 59.336 55.000 4.18 0.00 42.67 3.01
5357 5845 5.248020 CCACAAGATCCATTATAGCTCTCCT 59.752 44.000 0.00 0.00 0.00 3.69
5396 5885 1.899437 CTCCGGTTGGCAAGCTCCTA 61.899 60.000 25.03 8.40 34.14 2.94
5454 5943 1.211969 CCACATGTGCTCTGCTTGC 59.788 57.895 20.81 0.00 0.00 4.01
5490 5979 0.112995 ACACCATGACCAATGCACCT 59.887 50.000 0.00 0.00 34.67 4.00
5491 5980 0.968405 AACACCATGACCAATGCACC 59.032 50.000 0.00 0.00 34.67 5.01
5529 6018 0.109086 CCTATAGGCCGATGCTGACG 60.109 60.000 8.86 0.00 37.74 4.35
5556 6045 1.507140 AACCTCCATCTCGGGCATTA 58.493 50.000 0.00 0.00 34.36 1.90
5562 6051 1.270518 CCAGCATAACCTCCATCTCGG 60.271 57.143 0.00 0.00 0.00 4.63
5575 6064 0.677731 GCTTGAGCACCACCAGCATA 60.678 55.000 0.00 0.00 41.59 3.14
5600 6089 5.047590 CACCCCAAGACGCATATATAGTACA 60.048 44.000 0.00 0.00 0.00 2.90
5601 6090 5.047519 ACACCCCAAGACGCATATATAGTAC 60.048 44.000 0.00 0.00 0.00 2.73
5602 6091 5.047590 CACACCCCAAGACGCATATATAGTA 60.048 44.000 0.00 0.00 0.00 1.82
5603 6092 3.901844 ACACCCCAAGACGCATATATAGT 59.098 43.478 0.00 0.00 0.00 2.12
5604 6093 4.245660 CACACCCCAAGACGCATATATAG 58.754 47.826 0.00 0.00 0.00 1.31
5606 6095 2.438021 ACACACCCCAAGACGCATATAT 59.562 45.455 0.00 0.00 0.00 0.86
5607 6096 1.834896 ACACACCCCAAGACGCATATA 59.165 47.619 0.00 0.00 0.00 0.86
5643 6132 2.871633 CCACATAACTGCGCACATATGA 59.128 45.455 30.11 8.03 31.71 2.15
5655 6144 4.345257 AGCGATACTTCCATCCACATAACT 59.655 41.667 0.00 0.00 0.00 2.24
5703 6192 4.442375 AACAACACCGACAAACATTGAA 57.558 36.364 0.00 0.00 0.00 2.69
5728 6217 2.561419 CCTCGTTCAGACCTCCAACTAA 59.439 50.000 0.00 0.00 0.00 2.24
5744 6233 0.820871 GAGGTGCAAGATCTCCTCGT 59.179 55.000 11.35 2.43 37.11 4.18
5773 6262 6.407752 GGTTTTCACCCGAAGATAAGATCCTA 60.408 42.308 0.00 0.00 37.03 2.94
5834 6323 5.227184 GCTTCCAATTAAATAACAACGCGAG 59.773 40.000 15.93 7.57 0.00 5.03
5836 6325 4.854291 TGCTTCCAATTAAATAACAACGCG 59.146 37.500 3.53 3.53 0.00 6.01
5849 6338 4.289238 TGCCAAAATCATGCTTCCAATT 57.711 36.364 0.00 0.00 0.00 2.32
5878 6367 1.839424 GCCAGGTGCTCTAACCAAAT 58.161 50.000 0.00 0.00 43.20 2.32
5909 6398 1.266175 CCATCGATTCTCAGCCAATGC 59.734 52.381 0.00 0.00 37.95 3.56
5927 6416 5.049060 GCACAACACACTAATGATACAACCA 60.049 40.000 0.00 0.00 0.00 3.67
5934 6423 2.489329 GCAGGCACAACACACTAATGAT 59.511 45.455 0.00 0.00 0.00 2.45
5937 6426 0.874390 CGCAGGCACAACACACTAAT 59.126 50.000 0.00 0.00 0.00 1.73
5956 6445 3.546271 GTCAACGAAACTTTTGCAACCTC 59.454 43.478 0.00 0.00 0.00 3.85
5957 6446 3.057174 TGTCAACGAAACTTTTGCAACCT 60.057 39.130 0.00 0.00 0.00 3.50
5965 6454 5.821516 TTACCACATGTCAACGAAACTTT 57.178 34.783 0.00 0.00 0.00 2.66
5972 6461 5.917541 ACTAGTTTTACCACATGTCAACG 57.082 39.130 0.00 0.00 0.00 4.10
5976 6465 5.107220 CGTCCAACTAGTTTTACCACATGTC 60.107 44.000 5.07 0.00 0.00 3.06
5979 6468 4.964593 ACGTCCAACTAGTTTTACCACAT 58.035 39.130 5.07 0.00 0.00 3.21
5986 6475 5.413523 ACAAAGTCAACGTCCAACTAGTTTT 59.586 36.000 5.07 0.00 0.00 2.43
6000 6489 6.756542 ACTAGCAAAATTCCAACAAAGTCAAC 59.243 34.615 0.00 0.00 0.00 3.18
6006 6495 5.279256 GGCCTACTAGCAAAATTCCAACAAA 60.279 40.000 0.00 0.00 0.00 2.83
6091 6580 1.267121 TTAGCCTCACTCACTCCACC 58.733 55.000 0.00 0.00 0.00 4.61
6267 6814 1.537638 CGTGCATAGCTCTATCCTCGT 59.462 52.381 0.00 0.00 0.00 4.18
6427 6993 1.476471 GCTAGGGTAGACGTCTGCCTA 60.476 57.143 39.82 29.68 46.34 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.