Multiple sequence alignment - TraesCS3D01G146900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G146900 chr3D 100.000 3365 0 0 1 3365 111205635 111208999 0.000000e+00 6215
1 TraesCS3D01G146900 chr3D 85.714 175 25 0 1248 1422 403111198 403111372 5.730000e-43 185
2 TraesCS3D01G146900 chr3B 93.910 3399 88 48 3 3365 162221955 162225270 0.000000e+00 5020
3 TraesCS3D01G146900 chr3B 86.286 175 24 0 1248 1422 529404978 529405152 1.230000e-44 191
4 TraesCS3D01G146900 chr3A 89.398 2990 149 69 13 2897 119140517 119137591 0.000000e+00 3611
5 TraesCS3D01G146900 chr3A 87.708 480 32 15 2895 3365 119137540 119137079 4.940000e-148 534
6 TraesCS3D01G146900 chr3A 85.714 175 25 0 1248 1422 524756998 524757172 5.730000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G146900 chr3D 111205635 111208999 3364 False 6215.0 6215 100.000 1 3365 1 chr3D.!!$F1 3364
1 TraesCS3D01G146900 chr3B 162221955 162225270 3315 False 5020.0 5020 93.910 3 3365 1 chr3B.!!$F1 3362
2 TraesCS3D01G146900 chr3A 119137079 119140517 3438 True 2072.5 3611 88.553 13 3365 2 chr3A.!!$R1 3352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 212 0.460987 CTCAGCTCGGATGTTCCCAC 60.461 60.000 0.0 0.0 31.13 4.61 F
290 308 1.005032 CCTACACGCATACGCACATTG 60.005 52.381 0.0 0.0 45.53 2.82 F
1843 1934 0.112412 ACCAGACCCCATGTTTCACC 59.888 55.000 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1924 0.673437 GGTGGTGGTGGTGAAACATG 59.327 55.000 0.00 0.0 39.98 3.21 R
2115 2221 1.132657 TGGTTACTGGACTGAAGGGGA 60.133 52.381 0.00 0.0 0.00 4.81 R
3251 3473 0.108567 TGCGAGCTTGCGGTTGTATA 60.109 50.000 20.97 0.0 37.81 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 6.215845 TGAACACATCATCATGTCTATACCG 58.784 40.000 0.00 0.00 41.69 4.02
147 149 1.990424 CCCCCAAATTGGCTTTCCC 59.010 57.895 6.48 0.00 35.79 3.97
200 212 0.460987 CTCAGCTCGGATGTTCCCAC 60.461 60.000 0.00 0.00 31.13 4.61
201 213 1.191489 TCAGCTCGGATGTTCCCACA 61.191 55.000 0.00 0.00 37.31 4.17
203 215 1.745489 GCTCGGATGTTCCCACACC 60.745 63.158 0.00 0.00 35.03 4.16
205 217 3.124921 CGGATGTTCCCACACCGC 61.125 66.667 0.00 0.00 39.27 5.68
206 218 2.351276 GGATGTTCCCACACCGCT 59.649 61.111 0.00 0.00 35.03 5.52
275 293 2.404566 TTTTCTGCCCTGCGCCTACA 62.405 55.000 4.18 0.00 36.24 2.74
276 294 3.605749 TTCTGCCCTGCGCCTACAC 62.606 63.158 4.18 0.00 36.24 2.90
285 303 2.581138 CGCCTACACGCATACGCA 60.581 61.111 0.00 0.00 45.53 5.24
286 304 2.856346 CGCCTACACGCATACGCAC 61.856 63.158 0.00 0.00 45.53 5.34
287 305 1.807981 GCCTACACGCATACGCACA 60.808 57.895 0.00 0.00 45.53 4.57
288 306 1.151777 GCCTACACGCATACGCACAT 61.152 55.000 0.00 0.00 45.53 3.21
289 307 1.286501 CCTACACGCATACGCACATT 58.713 50.000 0.00 0.00 45.53 2.71
290 308 1.005032 CCTACACGCATACGCACATTG 60.005 52.381 0.00 0.00 45.53 2.82
469 539 2.360585 CTTTTGCCTCCCTCCCCC 59.639 66.667 0.00 0.00 0.00 5.40
630 718 3.822735 TCTTCTCATGGTTTTTCCTGCTG 59.177 43.478 0.00 0.00 37.07 4.41
942 1030 1.153667 CTTCCAGCTCTCGCACCTC 60.154 63.158 0.00 0.00 39.10 3.85
1095 1183 1.819903 CACCACCATCACATGCATCAA 59.180 47.619 0.00 0.00 0.00 2.57
1440 1531 1.374252 CAACCTCGACACCCTTCCG 60.374 63.158 0.00 0.00 0.00 4.30
1530 1621 2.142357 CTGACTCCGCCGACAACTCA 62.142 60.000 0.00 0.00 0.00 3.41
1569 1660 4.796231 ACCATCGCGCACTCGTCC 62.796 66.667 8.75 0.00 38.14 4.79
1833 1924 1.378646 GCAGCCTTTACCAGACCCC 60.379 63.158 0.00 0.00 0.00 4.95
1841 1932 3.499563 CCTTTACCAGACCCCATGTTTCA 60.500 47.826 0.00 0.00 0.00 2.69
1842 1933 2.871096 TACCAGACCCCATGTTTCAC 57.129 50.000 0.00 0.00 0.00 3.18
1843 1934 0.112412 ACCAGACCCCATGTTTCACC 59.888 55.000 0.00 0.00 0.00 4.02
1854 1960 0.681564 TGTTTCACCACCACCACCAC 60.682 55.000 0.00 0.00 0.00 4.16
1947 2053 0.451783 CCAGTTACTCATTTGGCGGC 59.548 55.000 0.00 0.00 0.00 6.53
2073 2179 3.585020 CAGGCGGCGCATATGCAA 61.585 61.111 34.36 0.00 42.21 4.08
2115 2221 1.981495 CAGTTCTTCTTCCAGAGGGGT 59.019 52.381 0.00 0.00 38.11 4.95
2196 2314 1.210931 CAACAACCCGATGCAGCAG 59.789 57.895 1.53 0.00 0.00 4.24
2197 2315 2.629656 AACAACCCGATGCAGCAGC 61.630 57.895 1.53 0.00 42.57 5.25
2417 2539 0.396811 AACCTCCACAGTGTACCAGC 59.603 55.000 0.00 0.00 0.00 4.85
2470 2596 6.233434 TGCATCACTGTGAGAATTCTTACTT 58.767 36.000 25.48 13.41 34.06 2.24
2543 2672 2.750888 GCATTGCCGTCGACCCTTC 61.751 63.158 10.58 0.00 0.00 3.46
2554 2683 2.668550 ACCCTTCCTTGAACGCGC 60.669 61.111 5.73 0.00 0.00 6.86
2555 2684 3.788766 CCCTTCCTTGAACGCGCG 61.789 66.667 30.96 30.96 0.00 6.86
2556 2685 2.736995 CCTTCCTTGAACGCGCGA 60.737 61.111 39.36 12.20 0.00 5.87
2557 2686 2.100631 CCTTCCTTGAACGCGCGAT 61.101 57.895 39.36 27.77 0.00 4.58
2558 2687 1.635663 CCTTCCTTGAACGCGCGATT 61.636 55.000 39.36 25.92 0.00 3.34
2559 2688 0.247301 CTTCCTTGAACGCGCGATTC 60.247 55.000 39.36 31.56 0.00 2.52
2560 2689 1.632046 TTCCTTGAACGCGCGATTCC 61.632 55.000 39.36 21.00 0.00 3.01
2614 2750 6.698766 GCTAATTTGATTCCGCTTCATCATTT 59.301 34.615 0.00 0.00 29.45 2.32
2626 2763 5.312079 GCTTCATCATTTATAGGAGCTGGT 58.688 41.667 0.00 0.00 0.00 4.00
2651 2788 1.293924 CATTGCAACTAGGAGGAGCG 58.706 55.000 0.00 0.00 0.00 5.03
2656 2793 2.027192 TGCAACTAGGAGGAGCGAAATT 60.027 45.455 0.00 0.00 0.00 1.82
2657 2794 2.609916 GCAACTAGGAGGAGCGAAATTC 59.390 50.000 0.00 0.00 0.00 2.17
2661 2798 0.461961 AGGAGGAGCGAAATTCGGAG 59.538 55.000 17.49 0.00 40.84 4.63
2725 2876 2.812358 TCTGCTACGTGTGTCATTGT 57.188 45.000 0.00 0.00 0.00 2.71
2785 2936 0.875908 TTGTGAGAGTGCAGCGACAC 60.876 55.000 4.18 4.18 41.02 3.67
2789 2940 2.662857 GAGTGCAGCGACACAGCA 60.663 61.111 13.55 0.00 43.23 4.41
2838 2997 5.163622 GCATTGCATTAGGTGTAGTTGATGT 60.164 40.000 3.15 0.00 0.00 3.06
2911 3128 8.350722 GTTGCTGTATGCTACTACTAGATGTTA 58.649 37.037 0.00 0.00 42.58 2.41
2992 3209 4.959210 TCTTTCCATCCTTTTTGGTCACAA 59.041 37.500 0.00 0.00 35.64 3.33
3008 3225 5.047872 TGGTCACAACATCATCTTTCCATTG 60.048 40.000 0.00 0.00 0.00 2.82
3011 3228 6.583806 GTCACAACATCATCTTTCCATTGTTC 59.416 38.462 0.00 0.00 0.00 3.18
3012 3229 5.570206 CACAACATCATCTTTCCATTGTTCG 59.430 40.000 0.00 0.00 0.00 3.95
3013 3230 4.361451 ACATCATCTTTCCATTGTTCGC 57.639 40.909 0.00 0.00 0.00 4.70
3014 3231 4.012374 ACATCATCTTTCCATTGTTCGCT 58.988 39.130 0.00 0.00 0.00 4.93
3015 3232 4.095483 ACATCATCTTTCCATTGTTCGCTC 59.905 41.667 0.00 0.00 0.00 5.03
3016 3233 3.942829 TCATCTTTCCATTGTTCGCTCT 58.057 40.909 0.00 0.00 0.00 4.09
3017 3234 4.326826 TCATCTTTCCATTGTTCGCTCTT 58.673 39.130 0.00 0.00 0.00 2.85
3018 3235 4.393062 TCATCTTTCCATTGTTCGCTCTTC 59.607 41.667 0.00 0.00 0.00 2.87
3093 3311 7.829211 TGGAGTATCTTCCCTTAACATCTTTTG 59.171 37.037 0.00 0.00 36.35 2.44
3096 3314 9.588096 AGTATCTTCCCTTAACATCTTTTGTTT 57.412 29.630 0.00 0.00 46.51 2.83
3132 3351 0.667184 GCCGTGCAACCAAATCCAAG 60.667 55.000 0.00 0.00 0.00 3.61
3136 3355 2.407090 GTGCAACCAAATCCAAGCTTC 58.593 47.619 0.00 0.00 0.00 3.86
3143 3362 6.427853 GCAACCAAATCCAAGCTTCTTATTTT 59.572 34.615 0.00 0.00 0.00 1.82
3214 3436 4.080638 TGCTCAAAACAACCAAAAGGGATT 60.081 37.500 0.00 0.00 41.15 3.01
3215 3437 4.881273 GCTCAAAACAACCAAAAGGGATTT 59.119 37.500 0.00 0.00 41.15 2.17
3249 3471 9.849607 GCAAACTTTTAAGCTTCAAAAATACTC 57.150 29.630 0.00 0.00 0.00 2.59
3268 3490 1.202371 TCCTATACAACCGCAAGCTCG 60.202 52.381 0.00 0.00 0.00 5.03
3293 3516 0.538977 CATGGATGGGATGGCCTCAC 60.539 60.000 3.32 0.13 0.00 3.51
3294 3517 0.700269 ATGGATGGGATGGCCTCACT 60.700 55.000 3.32 0.00 0.00 3.41
3331 3554 4.021544 CAGTACATCCATTCTCTCCTAGCC 60.022 50.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.529151 GCCTGTTCTTTGTGTGTGTTG 58.471 47.619 0.00 0.00 0.00 3.33
1 2 1.476488 GGCCTGTTCTTTGTGTGTGTT 59.524 47.619 0.00 0.00 0.00 3.32
63 65 9.256477 CTGGTTACTTTTCTAATTTGGGAAAAC 57.744 33.333 8.54 0.00 36.78 2.43
111 113 1.072159 GGTGCTGCTCCAGTTGAGT 59.928 57.895 15.42 0.00 43.48 3.41
175 187 2.441164 ATCCGAGCTGAGCCGAGT 60.441 61.111 15.14 2.74 0.00 4.18
205 217 0.387367 CTGCTTGCTTGCTTGCTCAG 60.387 55.000 10.35 4.61 0.00 3.35
206 218 1.105167 ACTGCTTGCTTGCTTGCTCA 61.105 50.000 10.35 0.00 0.00 4.26
247 265 0.617935 AGGGCAGAAAAGAGAGAGCC 59.382 55.000 0.00 0.00 41.29 4.70
277 295 0.378257 CCCTGTCAATGTGCGTATGC 59.622 55.000 0.00 0.00 43.20 3.14
278 296 1.935873 CTCCCTGTCAATGTGCGTATG 59.064 52.381 0.00 0.00 0.00 2.39
279 297 1.743772 GCTCCCTGTCAATGTGCGTAT 60.744 52.381 0.00 0.00 0.00 3.06
280 298 0.391130 GCTCCCTGTCAATGTGCGTA 60.391 55.000 0.00 0.00 0.00 4.42
281 299 1.672356 GCTCCCTGTCAATGTGCGT 60.672 57.895 0.00 0.00 0.00 5.24
282 300 2.743752 CGCTCCCTGTCAATGTGCG 61.744 63.158 0.00 0.00 35.99 5.34
283 301 2.401766 CCGCTCCCTGTCAATGTGC 61.402 63.158 0.00 0.00 0.00 4.57
284 302 2.401766 GCCGCTCCCTGTCAATGTG 61.402 63.158 0.00 0.00 0.00 3.21
285 303 2.045926 GCCGCTCCCTGTCAATGT 60.046 61.111 0.00 0.00 0.00 2.71
286 304 2.046023 TGCCGCTCCCTGTCAATG 60.046 61.111 0.00 0.00 0.00 2.82
287 305 2.270205 CTGCCGCTCCCTGTCAAT 59.730 61.111 0.00 0.00 0.00 2.57
288 306 4.704833 GCTGCCGCTCCCTGTCAA 62.705 66.667 0.00 0.00 0.00 3.18
630 718 5.112129 TCCCATAACTAGGAGGAAAAAGC 57.888 43.478 0.00 0.00 0.00 3.51
822 910 1.524165 CTGCTGCTGCTCCTCATCC 60.524 63.158 17.00 0.00 40.48 3.51
846 934 1.515521 GGTAGTGGTGGTGCTGTTGC 61.516 60.000 0.00 0.00 40.20 4.17
886 974 0.535780 TCTTGGTCCTGCTGCACTTG 60.536 55.000 0.00 0.00 0.00 3.16
942 1030 4.742201 CTCACGGACGTGGCCTGG 62.742 72.222 22.71 0.00 45.43 4.45
949 1037 4.657824 CGGTTGCCTCACGGACGT 62.658 66.667 0.00 0.00 0.00 4.34
1833 1924 0.673437 GGTGGTGGTGGTGAAACATG 59.327 55.000 0.00 0.00 39.98 3.21
1841 1932 4.204028 GCTGGTGGTGGTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
1842 1933 4.202574 TGCTGGTGGTGGTGGTGG 62.203 66.667 0.00 0.00 0.00 4.61
1843 1934 2.595463 CTGCTGGTGGTGGTGGTG 60.595 66.667 0.00 0.00 0.00 4.17
2038 2144 1.350319 GCTGCGACACGTTGAACAA 59.650 52.632 0.00 0.00 0.00 2.83
2115 2221 1.132657 TGGTTACTGGACTGAAGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
2196 2314 4.052229 CCTTGGTGCTGCTGCTGC 62.052 66.667 22.51 22.51 40.48 5.25
2197 2315 3.371063 CCCTTGGTGCTGCTGCTG 61.371 66.667 17.00 0.77 40.48 4.41
2198 2316 4.673375 CCCCTTGGTGCTGCTGCT 62.673 66.667 17.00 0.00 40.48 4.24
2203 2321 2.993264 CAAGCCCCCTTGGTGCTG 60.993 66.667 0.00 0.00 43.75 4.41
2204 2322 2.777960 TTCAAGCCCCCTTGGTGCT 61.778 57.895 3.86 0.00 46.69 4.40
2417 2539 2.009108 CTGATGGCCGATGTCGTTG 58.991 57.895 0.00 0.00 37.74 4.10
2470 2596 7.014905 ACAACAGTACAAGTCAGTTAGGACATA 59.985 37.037 0.00 0.00 40.29 2.29
2543 2672 2.100631 AGGAATCGCGCGTTCAAGG 61.101 57.895 31.09 8.34 0.00 3.61
2554 2683 4.274459 GGATGAAGAACCAATCAGGAATCG 59.726 45.833 0.00 0.00 41.22 3.34
2555 2684 5.444176 AGGATGAAGAACCAATCAGGAATC 58.556 41.667 0.00 0.00 41.22 2.52
2556 2685 5.193325 AGAGGATGAAGAACCAATCAGGAAT 59.807 40.000 0.00 0.00 41.22 3.01
2557 2686 4.537688 AGAGGATGAAGAACCAATCAGGAA 59.462 41.667 0.00 0.00 41.22 3.36
2558 2687 4.107072 AGAGGATGAAGAACCAATCAGGA 58.893 43.478 0.00 0.00 41.22 3.86
2559 2688 4.500499 AGAGGATGAAGAACCAATCAGG 57.500 45.455 0.00 0.00 45.67 3.86
2560 2689 4.096081 GCAAGAGGATGAAGAACCAATCAG 59.904 45.833 0.00 0.00 0.00 2.90
2614 2750 4.392047 CAATGCAATCACCAGCTCCTATA 58.608 43.478 0.00 0.00 0.00 1.31
2651 2788 2.603560 CGTAGAACCAGCTCCGAATTTC 59.396 50.000 0.00 0.00 0.00 2.17
2656 2793 0.322277 AGACGTAGAACCAGCTCCGA 60.322 55.000 0.00 0.00 0.00 4.55
2657 2794 0.179161 CAGACGTAGAACCAGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2661 2798 1.429463 CAACCAGACGTAGAACCAGC 58.571 55.000 0.00 0.00 0.00 4.85
2725 2876 3.748048 CCGAGTGATCTTGAAGCAAAAGA 59.252 43.478 0.00 0.00 38.01 2.52
2785 2936 2.281970 TGGCTCACCAGCTTGCTG 60.282 61.111 15.02 15.02 46.03 4.41
2797 2948 3.993535 CCACAAAGAGGCTGGCTC 58.006 61.111 22.34 22.34 0.00 4.70
2838 2997 3.813166 GCTTGACCTACAGCAAACTACAA 59.187 43.478 0.00 0.00 0.00 2.41
2934 3151 0.719015 AGACTCCTCTCCCCATCCAA 59.281 55.000 0.00 0.00 0.00 3.53
2967 3184 6.310941 TGTGACCAAAAAGGATGGAAAGATA 58.689 36.000 0.00 0.00 40.56 1.98
2992 3209 4.012374 AGCGAACAATGGAAAGATGATGT 58.988 39.130 0.00 0.00 0.00 3.06
3008 3225 4.750598 ACAGTAAAGAAAGGAAGAGCGAAC 59.249 41.667 0.00 0.00 0.00 3.95
3011 3228 4.150804 GTGACAGTAAAGAAAGGAAGAGCG 59.849 45.833 0.00 0.00 0.00 5.03
3012 3229 5.301555 AGTGACAGTAAAGAAAGGAAGAGC 58.698 41.667 0.00 0.00 0.00 4.09
3013 3230 7.662897 AGTAGTGACAGTAAAGAAAGGAAGAG 58.337 38.462 0.00 0.00 0.00 2.85
3014 3231 7.598759 AGTAGTGACAGTAAAGAAAGGAAGA 57.401 36.000 0.00 0.00 0.00 2.87
3018 3235 9.303537 GCTTATAGTAGTGACAGTAAAGAAAGG 57.696 37.037 4.36 0.00 0.00 3.11
3093 3311 9.061610 GCACGGCATAATGTAATATGAATAAAC 57.938 33.333 0.00 0.00 35.69 2.01
3096 3314 7.913674 TGCACGGCATAATGTAATATGAATA 57.086 32.000 0.00 0.00 35.69 1.75
3097 3315 6.816134 TGCACGGCATAATGTAATATGAAT 57.184 33.333 0.00 0.00 35.69 2.57
3100 3318 5.153513 GGTTGCACGGCATAATGTAATATG 58.846 41.667 0.00 0.00 38.76 1.78
3101 3319 4.824537 TGGTTGCACGGCATAATGTAATAT 59.175 37.500 0.00 0.00 38.76 1.28
3102 3320 4.200092 TGGTTGCACGGCATAATGTAATA 58.800 39.130 0.00 0.00 38.76 0.98
3103 3321 3.020274 TGGTTGCACGGCATAATGTAAT 58.980 40.909 0.00 0.00 38.76 1.89
3105 3323 2.115343 TGGTTGCACGGCATAATGTA 57.885 45.000 0.00 0.00 38.76 2.29
3106 3324 1.252175 TTGGTTGCACGGCATAATGT 58.748 45.000 0.00 0.00 38.76 2.71
3107 3325 2.360553 TTTGGTTGCACGGCATAATG 57.639 45.000 0.00 0.00 38.76 1.90
3108 3326 2.159114 GGATTTGGTTGCACGGCATAAT 60.159 45.455 0.00 0.00 38.76 1.28
3109 3327 1.203523 GGATTTGGTTGCACGGCATAA 59.796 47.619 0.00 0.00 38.76 1.90
3115 3334 0.314935 AGCTTGGATTTGGTTGCACG 59.685 50.000 0.00 0.00 0.00 5.34
3150 3369 9.238368 TCCAACAAGTCTTTTAAAAAGAGAGAA 57.762 29.630 1.66 0.00 0.00 2.87
3162 3383 4.156455 TCTCAGCTCCAACAAGTCTTTT 57.844 40.909 0.00 0.00 0.00 2.27
3249 3471 1.209128 CGAGCTTGCGGTTGTATAGG 58.791 55.000 0.00 0.00 0.00 2.57
3250 3472 0.577269 GCGAGCTTGCGGTTGTATAG 59.423 55.000 10.93 0.00 0.00 1.31
3251 3473 0.108567 TGCGAGCTTGCGGTTGTATA 60.109 50.000 20.97 0.00 37.81 1.47
3252 3474 0.744414 ATGCGAGCTTGCGGTTGTAT 60.744 50.000 20.97 4.94 37.81 2.29
3253 3475 1.375396 ATGCGAGCTTGCGGTTGTA 60.375 52.632 20.97 2.48 37.81 2.41
3268 3490 1.541310 CCATCCCATCCATGCCATGC 61.541 60.000 0.00 0.00 0.00 4.06
3293 3516 8.678593 TGGATGTACTGTAGTGAACTATAGAG 57.321 38.462 17.90 6.83 39.23 2.43
3294 3517 9.642343 AATGGATGTACTGTAGTGAACTATAGA 57.358 33.333 17.90 0.33 39.23 1.98
3331 3554 3.137176 ACCCAACAGATCACATGGATAGG 59.863 47.826 11.10 0.00 36.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.