Multiple sequence alignment - TraesCS3D01G146500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G146500
chr3D
100.000
3743
0
0
1
3743
110397934
110394192
0.000000e+00
6913
1
TraesCS3D01G146500
chr3B
92.420
2810
109
44
733
3528
161636853
161634134
0.000000e+00
3914
2
TraesCS3D01G146500
chr3B
93.971
680
23
4
1
662
161637695
161637016
0.000000e+00
1013
3
TraesCS3D01G146500
chr3B
98.013
151
3
0
3593
3743
161634141
161633991
2.870000e-66
263
4
TraesCS3D01G146500
chr3A
92.019
1942
120
20
938
2861
119694037
119695961
0.000000e+00
2695
5
TraesCS3D01G146500
chr3A
92.988
656
27
5
9
649
119692950
119693601
0.000000e+00
939
6
TraesCS3D01G146500
chr3A
87.674
576
45
13
2892
3458
119695959
119696517
0.000000e+00
647
7
TraesCS3D01G146500
chr3A
83.448
145
16
3
3530
3673
119696522
119696659
1.090000e-25
128
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G146500
chr3D
110394192
110397934
3742
True
6913.00
6913
100.000000
1
3743
1
chr3D.!!$R1
3742
1
TraesCS3D01G146500
chr3B
161633991
161637695
3704
True
1730.00
3914
94.801333
1
3743
3
chr3B.!!$R1
3742
2
TraesCS3D01G146500
chr3A
119692950
119696659
3709
False
1102.25
2695
89.032250
9
3673
4
chr3A.!!$F1
3664
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
931
1153
0.093535
CGTTGACGTGTGCATAGCAG
59.906
55.0
0.00
0.0
35.11
4.24
F
932
1154
0.179215
GTTGACGTGTGCATAGCAGC
60.179
55.0
0.00
0.0
40.08
5.25
F
938
1160
0.238289
GTGTGCATAGCAGCGTTGTT
59.762
50.0
0.00
0.0
40.08
2.83
F
1640
1878
0.392998
GGAGATGGCTTCTTTGCGGA
60.393
55.0
4.23
0.0
33.74
5.54
F
1930
2186
0.804989
GAGGGAGTGTGCAAAATCCG
59.195
55.0
16.90
0.0
32.30
4.18
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1906
2162
0.257328
TTTGCACACTCCCTCCACAA
59.743
50.000
0.00
0.0
0.00
3.33
R
2573
2837
0.721718
CTTCAGGTTTAAGCGCCTCG
59.278
55.000
2.29
0.0
31.73
4.63
R
2577
2841
1.001815
TGCAACTTCAGGTTTAAGCGC
60.002
47.619
0.00
0.0
35.74
5.92
R
2603
2867
1.132849
TGGTCCCTCACCTCTGAAAGA
60.133
52.381
0.00
0.0
46.98
2.52
R
3677
3959
1.212935
GCCCCACATGACATCCTTACT
59.787
52.381
0.00
0.0
0.00
2.24
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
98
100
9.778741
TTGTTATCTAAAATGTATCTAGCCCTG
57.221
33.333
0.00
0.00
0.00
4.45
158
160
6.604795
CCAAAATGATGAACCTAACATCTCCT
59.395
38.462
0.00
0.00
42.89
3.69
168
170
6.051179
ACCTAACATCTCCTGTTTCCTTAC
57.949
41.667
0.00
0.00
45.98
2.34
417
423
8.420374
TTGCAGTTATGTAACTATTGTAGAGC
57.580
34.615
5.19
3.64
44.19
4.09
665
721
5.183140
TGCTCTAAGCTGAAACATTTTACCC
59.817
40.000
0.11
0.00
42.97
3.69
674
730
4.901849
TGAAACATTTTACCCCAATGTGGA
59.098
37.500
0.00
0.00
42.80
4.02
695
782
4.315803
GAGGCAGTAGAAAAGTAGCACAA
58.684
43.478
0.00
0.00
0.00
3.33
715
802
5.743398
CACAATCGTTTTGCTTTTCTGAAGA
59.257
36.000
0.00
0.00
0.00
2.87
716
803
6.418819
CACAATCGTTTTGCTTTTCTGAAGAT
59.581
34.615
0.00
0.00
0.00
2.40
717
804
6.418819
ACAATCGTTTTGCTTTTCTGAAGATG
59.581
34.615
0.00
0.00
0.00
2.90
718
805
4.858935
TCGTTTTGCTTTTCTGAAGATGG
58.141
39.130
0.00
0.00
0.00
3.51
719
806
3.983344
CGTTTTGCTTTTCTGAAGATGGG
59.017
43.478
0.00
0.00
0.00
4.00
720
807
4.309933
GTTTTGCTTTTCTGAAGATGGGG
58.690
43.478
0.00
0.00
0.00
4.96
722
809
1.203038
TGCTTTTCTGAAGATGGGGCA
60.203
47.619
0.00
0.00
0.00
5.36
723
810
1.475682
GCTTTTCTGAAGATGGGGCAG
59.524
52.381
0.00
0.00
0.00
4.85
724
811
2.097825
CTTTTCTGAAGATGGGGCAGG
58.902
52.381
0.00
0.00
0.00
4.85
725
812
0.332632
TTTCTGAAGATGGGGCAGGG
59.667
55.000
0.00
0.00
0.00
4.45
727
814
3.728292
CTGAAGATGGGGCAGGGGC
62.728
68.421
0.00
0.00
40.13
5.80
764
955
2.338809
TCTGAGTTTGTCTCCCCACAT
58.661
47.619
0.00
0.00
42.12
3.21
774
965
2.497273
GTCTCCCCACATTTCCAATTGG
59.503
50.000
19.08
19.08
0.00
3.16
778
969
3.326297
TCCCCACATTTCCAATTGGTTTC
59.674
43.478
23.76
0.00
36.34
2.78
784
975
6.989169
CCACATTTCCAATTGGTTTCACTTTA
59.011
34.615
23.76
0.00
36.34
1.85
815
1037
6.332630
GGTGAATAAGTTGTGCTATGCAAAT
58.667
36.000
0.00
0.00
41.47
2.32
817
1039
6.473455
GTGAATAAGTTGTGCTATGCAAATCC
59.527
38.462
0.00
0.00
41.47
3.01
823
1045
5.048364
AGTTGTGCTATGCAAATCCGTTTTA
60.048
36.000
0.00
0.00
41.47
1.52
824
1046
4.728534
TGTGCTATGCAAATCCGTTTTAC
58.271
39.130
0.00
0.00
41.47
2.01
846
1068
5.600696
ACTAGTTTGTTTCCCTGCAAAATG
58.399
37.500
0.00
0.00
36.51
2.32
848
1070
3.199727
AGTTTGTTTCCCTGCAAAATGGT
59.800
39.130
0.00
0.00
36.51
3.55
851
1073
0.965439
TTTCCCTGCAAAATGGTCCG
59.035
50.000
0.00
0.00
0.00
4.79
855
1077
0.523072
CCTGCAAAATGGTCCGACTG
59.477
55.000
0.00
0.00
0.00
3.51
858
1080
1.234821
GCAAAATGGTCCGACTGACA
58.765
50.000
0.00
0.00
46.38
3.58
867
1089
0.894184
TCCGACTGACAGTGGACCTC
60.894
60.000
18.20
0.00
0.00
3.85
886
1108
1.463553
CGCCTTTGACCTGGCCTTTT
61.464
55.000
3.32
0.00
45.90
2.27
904
1126
1.462616
TTTTGTGGCCATCTCATCGG
58.537
50.000
9.72
0.00
0.00
4.18
909
1131
2.824546
GCCATCTCATCGGCTGGA
59.175
61.111
0.00
0.00
45.29
3.86
910
1132
1.596477
GCCATCTCATCGGCTGGAC
60.596
63.158
0.00
0.00
45.29
4.02
911
1133
1.300465
CCATCTCATCGGCTGGACG
60.300
63.158
0.00
0.00
0.00
4.79
912
1134
1.953138
CATCTCATCGGCTGGACGC
60.953
63.158
0.00
0.00
38.13
5.19
913
1135
3.490793
ATCTCATCGGCTGGACGCG
62.491
63.158
3.53
3.53
40.44
6.01
914
1136
4.498520
CTCATCGGCTGGACGCGT
62.499
66.667
13.85
13.85
40.44
6.01
915
1137
3.989698
CTCATCGGCTGGACGCGTT
62.990
63.158
15.53
0.00
40.44
4.84
916
1138
3.853330
CATCGGCTGGACGCGTTG
61.853
66.667
15.53
8.42
40.44
4.10
917
1139
4.063967
ATCGGCTGGACGCGTTGA
62.064
61.111
15.53
5.45
40.44
3.18
927
1149
3.151798
CGCGTTGACGTGTGCATA
58.848
55.556
8.78
0.00
44.02
3.14
928
1150
1.057208
CGCGTTGACGTGTGCATAG
59.943
57.895
8.78
0.00
44.02
2.23
929
1151
1.225745
GCGTTGACGTGTGCATAGC
60.226
57.895
0.00
0.00
42.22
2.97
930
1152
1.896339
GCGTTGACGTGTGCATAGCA
61.896
55.000
0.00
0.00
42.22
3.49
931
1153
0.093535
CGTTGACGTGTGCATAGCAG
59.906
55.000
0.00
0.00
35.11
4.24
932
1154
0.179215
GTTGACGTGTGCATAGCAGC
60.179
55.000
0.00
0.00
40.08
5.25
933
1155
1.625759
TTGACGTGTGCATAGCAGCG
61.626
55.000
0.00
12.22
40.08
5.18
934
1156
2.048222
ACGTGTGCATAGCAGCGT
60.048
55.556
13.25
13.25
42.87
5.07
935
1157
1.626654
GACGTGTGCATAGCAGCGTT
61.627
55.000
17.88
6.76
45.70
4.84
936
1158
1.225827
CGTGTGCATAGCAGCGTTG
60.226
57.895
0.00
0.00
40.08
4.10
937
1159
1.868997
GTGTGCATAGCAGCGTTGT
59.131
52.632
0.00
0.00
40.08
3.32
938
1160
0.238289
GTGTGCATAGCAGCGTTGTT
59.762
50.000
0.00
0.00
40.08
2.83
939
1161
1.463056
GTGTGCATAGCAGCGTTGTTA
59.537
47.619
0.00
0.00
40.08
2.41
940
1162
2.095853
GTGTGCATAGCAGCGTTGTTAT
59.904
45.455
2.82
2.82
40.08
1.89
941
1163
2.351418
TGTGCATAGCAGCGTTGTTATC
59.649
45.455
5.67
3.03
40.08
1.75
942
1164
1.939934
TGCATAGCAGCGTTGTTATCC
59.060
47.619
5.67
0.00
37.31
2.59
943
1165
2.213499
GCATAGCAGCGTTGTTATCCT
58.787
47.619
5.67
0.00
29.42
3.24
944
1166
3.181470
TGCATAGCAGCGTTGTTATCCTA
60.181
43.478
5.67
0.00
37.31
2.94
945
1167
3.430218
GCATAGCAGCGTTGTTATCCTAG
59.570
47.826
5.67
0.00
29.42
3.02
946
1168
1.941325
AGCAGCGTTGTTATCCTAGC
58.059
50.000
0.00
0.00
0.00
3.42
1188
1420
1.890041
CGCCCCGAACACTGACAAA
60.890
57.895
0.00
0.00
0.00
2.83
1194
1426
0.878523
CGAACACTGACAAAGCGGGA
60.879
55.000
0.00
0.00
0.00
5.14
1195
1427
0.586802
GAACACTGACAAAGCGGGAC
59.413
55.000
0.00
0.00
0.00
4.46
1197
1429
1.071471
CACTGACAAAGCGGGACCT
59.929
57.895
0.00
0.00
0.00
3.85
1208
1440
4.475135
GGGACCTCCAGAAGCCGC
62.475
72.222
0.00
0.00
37.91
6.53
1450
1688
0.881118
TTTCATCGAGCAAGTTGGGC
59.119
50.000
4.75
0.00
0.00
5.36
1632
1870
1.225704
CACCCTGGGAGATGGCTTC
59.774
63.158
22.23
0.00
0.00
3.86
1633
1871
1.083706
ACCCTGGGAGATGGCTTCT
59.916
57.895
22.23
2.05
37.41
2.85
1634
1872
0.551131
ACCCTGGGAGATGGCTTCTT
60.551
55.000
22.23
0.00
33.74
2.52
1635
1873
0.627986
CCCTGGGAGATGGCTTCTTT
59.372
55.000
7.01
0.00
33.74
2.52
1636
1874
1.684248
CCCTGGGAGATGGCTTCTTTG
60.684
57.143
7.01
0.00
33.74
2.77
1637
1875
1.101331
CTGGGAGATGGCTTCTTTGC
58.899
55.000
4.23
0.00
33.74
3.68
1638
1876
0.677731
TGGGAGATGGCTTCTTTGCG
60.678
55.000
4.23
0.00
33.74
4.85
1639
1877
1.379642
GGGAGATGGCTTCTTTGCGG
61.380
60.000
4.23
0.00
33.74
5.69
1640
1878
0.392998
GGAGATGGCTTCTTTGCGGA
60.393
55.000
4.23
0.00
33.74
5.54
1724
1972
0.890996
CTTGGGTTCAGGTGAGTGCC
60.891
60.000
0.00
0.00
0.00
5.01
1726
1974
2.358737
GGTTCAGGTGAGTGCCCG
60.359
66.667
0.00
0.00
0.00
6.13
1732
1980
0.951040
CAGGTGAGTGCCCGAAGAAC
60.951
60.000
0.00
0.00
0.00
3.01
1759
2007
6.567050
GGCAGTGTGAATATTGAATTGATGT
58.433
36.000
0.00
0.00
0.00
3.06
1906
2162
4.641989
GTGATATGCCTGTCCACAATCTTT
59.358
41.667
0.00
0.00
0.00
2.52
1930
2186
0.804989
GAGGGAGTGTGCAAAATCCG
59.195
55.000
16.90
0.00
32.30
4.18
1985
2241
2.625790
CTCTAGTACAGGTGCCAGATCC
59.374
54.545
0.00
0.00
0.00
3.36
2014
2270
6.538742
TCCTTCTCTGTTACACTGTCAAAAAG
59.461
38.462
0.00
0.00
0.00
2.27
2496
2755
6.726490
ATACCTCGAGAATGGTAAGCTTTA
57.274
37.500
15.71
0.00
41.48
1.85
2573
2837
9.341899
GTATTGTTGATGTTTTTCAGGTATGAC
57.658
33.333
0.00
0.00
34.35
3.06
2577
2841
4.935205
TGATGTTTTTCAGGTATGACGAGG
59.065
41.667
0.00
0.00
34.35
4.63
2603
2867
3.825143
AAACCTGAAGTTGCAAGCAAT
57.175
38.095
11.00
0.00
39.19
3.56
2755
3019
5.759059
TGAATGGCTAAAATCTCACCTGAT
58.241
37.500
0.00
0.00
0.00
2.90
2833
3097
7.992608
ACCTTTTTCTTGGTTTATTTTGATGCT
59.007
29.630
0.00
0.00
31.62
3.79
2895
3159
1.605753
GGTTGGTCACCTTGTCCTTC
58.394
55.000
0.00
0.00
43.29
3.46
2957
3221
5.349543
TGCATGATCACATCTATTATGTCGC
59.650
40.000
0.00
0.00
34.15
5.19
2979
3243
9.507280
GTCGCATTATCATTATGGAAATTATGG
57.493
33.333
0.00
0.00
0.00
2.74
2980
3244
9.460019
TCGCATTATCATTATGGAAATTATGGA
57.540
29.630
0.00
0.00
0.00
3.41
3064
3328
6.922957
GTGCACTTTGAATGATTGTAGGAAAA
59.077
34.615
10.32
0.00
0.00
2.29
3178
3443
2.037641
GCCTCAAAGTTTTTGATGGGCT
59.962
45.455
19.44
0.00
37.03
5.19
3180
3445
4.809673
CCTCAAAGTTTTTGATGGGCTAC
58.190
43.478
4.85
0.00
0.00
3.58
3181
3446
4.280677
CCTCAAAGTTTTTGATGGGCTACA
59.719
41.667
4.85
0.00
0.00
2.74
3272
3544
7.822334
CACAACTAATACAAGGACTATGGACAA
59.178
37.037
0.00
0.00
0.00
3.18
3318
3590
5.468746
CCAATTGAATGAAATGGATGGATGC
59.531
40.000
7.12
0.00
0.00
3.91
3326
3598
5.849510
TGAAATGGATGGATGCATTGATTC
58.150
37.500
0.00
5.30
46.12
2.52
3398
3670
7.041721
CAGTCTAATATACACCTGCTCAAACA
58.958
38.462
0.00
0.00
0.00
2.83
3419
3691
4.218417
ACATCAAGGACAAAATGTACCTGC
59.782
41.667
0.00
0.00
29.22
4.85
3484
3766
7.377766
TGCAGACCTCATGTAGTAATTTTTC
57.622
36.000
0.00
0.00
0.00
2.29
3531
3813
7.630242
AGTTTGAATCTTCACTGAAGTTTCA
57.370
32.000
27.17
27.17
46.95
2.69
3544
3826
4.358851
TGAAGTTTCATTTGTTGGCTTCG
58.641
39.130
0.00
0.00
34.63
3.79
3560
3842
2.413837
CTTCGTTCTCAAATGGGACGT
58.586
47.619
0.00
0.00
0.00
4.34
3563
3845
1.234821
GTTCTCAAATGGGACGTGCA
58.765
50.000
9.96
0.00
0.00
4.57
3567
3849
2.086869
CTCAAATGGGACGTGCATCTT
58.913
47.619
9.96
0.00
0.00
2.40
3568
3850
2.489329
CTCAAATGGGACGTGCATCTTT
59.511
45.455
9.96
2.20
0.00
2.52
3587
3869
7.115378
GCATCTTTTGCCCTTATATTTTGATCG
59.885
37.037
0.00
0.00
46.15
3.69
3640
3922
4.971008
GGAAACTCTCCTAATGTTTTCGC
58.029
43.478
0.00
0.00
41.61
4.70
3677
3959
5.772825
GCATTAGCTCAATACCATCCAAA
57.227
39.130
0.00
0.00
37.91
3.28
3685
3967
6.064717
GCTCAATACCATCCAAAGTAAGGAT
58.935
40.000
0.00
0.00
46.61
3.24
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
98
100
7.834068
TTCTATCATTCTAAAGACTGCACAC
57.166
36.000
0.00
0.00
0.00
3.82
158
160
4.385825
AGATCTGCAAACGTAAGGAAACA
58.614
39.130
0.00
0.00
46.39
2.83
417
423
3.539592
CGAATGACTAAGTAAACGCAGCG
60.540
47.826
14.82
14.82
0.00
5.18
558
564
8.107399
ACTAGCTAGTTCCAAAATAAAACCAC
57.893
34.615
20.95
0.00
31.13
4.16
599
618
5.863965
TGAATTATCCATGCTATTCCGACA
58.136
37.500
0.00
0.00
0.00
4.35
665
721
2.787473
TTCTACTGCCTCCACATTGG
57.213
50.000
0.00
0.00
39.43
3.16
674
730
4.351874
TTGTGCTACTTTTCTACTGCCT
57.648
40.909
0.00
0.00
0.00
4.75
695
782
5.464168
CCATCTTCAGAAAAGCAAAACGAT
58.536
37.500
0.00
0.00
0.00
3.73
723
810
1.070445
CATGAGATCAGGTCGCCCC
59.930
63.158
0.00
0.00
0.00
5.80
724
811
0.683973
ATCATGAGATCAGGTCGCCC
59.316
55.000
0.09
0.00
0.00
6.13
725
812
2.036992
AGAATCATGAGATCAGGTCGCC
59.963
50.000
12.37
0.00
31.90
5.54
727
814
4.581077
TCAGAATCATGAGATCAGGTCG
57.419
45.455
12.37
0.00
31.90
4.79
742
920
2.711009
TGTGGGGAGACAAACTCAGAAT
59.289
45.455
0.00
0.00
46.54
2.40
764
955
9.213799
GCATAATAAAGTGAAACCAATTGGAAA
57.786
29.630
31.22
9.99
37.80
3.13
774
965
9.221775
CTTATTCACCGCATAATAAAGTGAAAC
57.778
33.333
7.84
0.00
46.91
2.78
778
969
8.181573
ACAACTTATTCACCGCATAATAAAGTG
58.818
33.333
0.00
0.00
29.62
3.16
784
975
4.640201
AGCACAACTTATTCACCGCATAAT
59.360
37.500
0.00
0.00
0.00
1.28
815
1037
5.528320
CAGGGAAACAAACTAGTAAAACGGA
59.472
40.000
0.00
0.00
0.00
4.69
817
1039
5.209977
GCAGGGAAACAAACTAGTAAAACG
58.790
41.667
0.00
0.00
0.00
3.60
823
1045
5.453198
CCATTTTGCAGGGAAACAAACTAGT
60.453
40.000
0.00
0.00
35.60
2.57
824
1046
4.990426
CCATTTTGCAGGGAAACAAACTAG
59.010
41.667
0.00
0.00
35.60
2.57
846
1068
1.289380
GTCCACTGTCAGTCGGACC
59.711
63.158
27.46
17.37
46.38
4.46
848
1070
0.894184
GAGGTCCACTGTCAGTCGGA
60.894
60.000
15.92
15.92
0.00
4.55
851
1073
1.080434
GCGAGGTCCACTGTCAGTC
60.080
63.158
1.37
0.00
0.00
3.51
855
1077
0.951040
CAAAGGCGAGGTCCACTGTC
60.951
60.000
0.00
0.00
0.00
3.51
858
1080
1.371558
GTCAAAGGCGAGGTCCACT
59.628
57.895
0.00
0.00
0.00
4.00
886
1108
1.031571
GCCGATGAGATGGCCACAAA
61.032
55.000
8.16
0.00
45.73
2.83
894
1116
1.953138
GCGTCCAGCCGATGAGATG
60.953
63.158
0.00
0.00
40.81
2.90
895
1117
2.419198
GCGTCCAGCCGATGAGAT
59.581
61.111
0.00
0.00
40.81
2.75
896
1118
4.193334
CGCGTCCAGCCGATGAGA
62.193
66.667
0.00
0.00
44.76
3.27
897
1119
3.989698
AACGCGTCCAGCCGATGAG
62.990
63.158
14.44
0.00
44.76
2.90
900
1122
4.063967
TCAACGCGTCCAGCCGAT
62.064
61.111
14.44
0.00
44.76
4.18
904
1126
4.059459
CACGTCAACGCGTCCAGC
62.059
66.667
14.44
2.32
43.83
4.85
905
1127
2.657296
ACACGTCAACGCGTCCAG
60.657
61.111
14.44
6.03
43.83
3.86
906
1128
2.957489
CACACGTCAACGCGTCCA
60.957
61.111
14.44
0.00
43.83
4.02
907
1129
4.349871
GCACACGTCAACGCGTCC
62.350
66.667
14.44
2.36
43.83
4.79
908
1130
1.610715
TATGCACACGTCAACGCGTC
61.611
55.000
14.44
0.00
43.83
5.19
909
1131
1.614227
CTATGCACACGTCAACGCGT
61.614
55.000
5.58
5.58
46.88
6.01
910
1132
1.057208
CTATGCACACGTCAACGCG
59.943
57.895
3.53
3.53
44.43
6.01
911
1133
1.225745
GCTATGCACACGTCAACGC
60.226
57.895
1.81
0.00
44.43
4.84
912
1134
0.093535
CTGCTATGCACACGTCAACG
59.906
55.000
0.12
0.12
38.81
4.10
913
1135
0.179215
GCTGCTATGCACACGTCAAC
60.179
55.000
0.00
0.00
33.79
3.18
914
1136
1.625759
CGCTGCTATGCACACGTCAA
61.626
55.000
0.00
0.00
33.79
3.18
915
1137
2.094066
CGCTGCTATGCACACGTCA
61.094
57.895
0.00
0.00
33.79
4.35
916
1138
1.626654
AACGCTGCTATGCACACGTC
61.627
55.000
13.59
0.00
42.59
4.34
917
1139
1.667830
AACGCTGCTATGCACACGT
60.668
52.632
9.19
9.19
44.34
4.49
918
1140
1.225827
CAACGCTGCTATGCACACG
60.226
57.895
0.00
8.15
38.45
4.49
919
1141
0.238289
AACAACGCTGCTATGCACAC
59.762
50.000
0.00
0.00
33.79
3.82
920
1142
1.802069
TAACAACGCTGCTATGCACA
58.198
45.000
0.00
0.00
33.79
4.57
921
1143
2.286418
GGATAACAACGCTGCTATGCAC
60.286
50.000
0.00
0.00
33.79
4.57
922
1144
1.939934
GGATAACAACGCTGCTATGCA
59.060
47.619
0.00
0.00
36.92
3.96
923
1145
2.213499
AGGATAACAACGCTGCTATGC
58.787
47.619
0.00
0.00
0.00
3.14
924
1146
3.430218
GCTAGGATAACAACGCTGCTATG
59.570
47.826
0.00
0.00
0.00
2.23
925
1147
3.555168
GGCTAGGATAACAACGCTGCTAT
60.555
47.826
0.00
0.00
0.00
2.97
926
1148
2.223971
GGCTAGGATAACAACGCTGCTA
60.224
50.000
0.00
0.00
0.00
3.49
927
1149
1.473434
GGCTAGGATAACAACGCTGCT
60.473
52.381
0.00
0.00
0.00
4.24
928
1150
0.938008
GGCTAGGATAACAACGCTGC
59.062
55.000
0.00
0.00
0.00
5.25
929
1151
1.583054
GGGCTAGGATAACAACGCTG
58.417
55.000
0.00
0.00
0.00
5.18
930
1152
0.104304
CGGGCTAGGATAACAACGCT
59.896
55.000
0.00
0.00
0.00
5.07
931
1153
0.179092
ACGGGCTAGGATAACAACGC
60.179
55.000
0.00
0.00
0.00
4.84
932
1154
3.441496
TTACGGGCTAGGATAACAACG
57.559
47.619
0.00
0.00
0.00
4.10
933
1155
3.873361
GGTTTACGGGCTAGGATAACAAC
59.127
47.826
0.00
0.00
0.00
3.32
934
1156
3.776417
AGGTTTACGGGCTAGGATAACAA
59.224
43.478
0.00
0.00
0.00
2.83
935
1157
3.377573
AGGTTTACGGGCTAGGATAACA
58.622
45.455
0.00
0.00
0.00
2.41
936
1158
3.244009
GGAGGTTTACGGGCTAGGATAAC
60.244
52.174
0.00
0.00
0.00
1.89
937
1159
2.967887
GGAGGTTTACGGGCTAGGATAA
59.032
50.000
0.00
0.00
0.00
1.75
938
1160
2.601905
GGAGGTTTACGGGCTAGGATA
58.398
52.381
0.00
0.00
0.00
2.59
939
1161
1.421480
GGAGGTTTACGGGCTAGGAT
58.579
55.000
0.00
0.00
0.00
3.24
940
1162
0.688749
GGGAGGTTTACGGGCTAGGA
60.689
60.000
0.00
0.00
0.00
2.94
941
1163
0.979187
TGGGAGGTTTACGGGCTAGG
60.979
60.000
0.00
0.00
0.00
3.02
942
1164
0.177373
GTGGGAGGTTTACGGGCTAG
59.823
60.000
0.00
0.00
0.00
3.42
943
1165
0.544833
TGTGGGAGGTTTACGGGCTA
60.545
55.000
0.00
0.00
0.00
3.93
944
1166
1.844289
TGTGGGAGGTTTACGGGCT
60.844
57.895
0.00
0.00
0.00
5.19
945
1167
1.673337
GTGTGGGAGGTTTACGGGC
60.673
63.158
0.00
0.00
0.00
6.13
946
1168
1.002990
GGTGTGGGAGGTTTACGGG
60.003
63.158
0.00
0.00
0.00
5.28
1182
1414
2.111999
CTGGAGGTCCCGCTTTGTCA
62.112
60.000
0.00
0.00
37.93
3.58
1188
1420
3.394836
GCTTCTGGAGGTCCCGCT
61.395
66.667
0.00
0.00
37.93
5.52
1443
1680
4.189580
AGCACCACACGCCCAACT
62.190
61.111
0.00
0.00
0.00
3.16
1450
1688
2.941333
CAGCAAGAGCACCACACG
59.059
61.111
0.00
0.00
45.49
4.49
1637
1875
4.368808
CCACACGCGCAAAGTCCG
62.369
66.667
5.73
0.00
0.00
4.79
1638
1876
4.683334
GCCACACGCGCAAAGTCC
62.683
66.667
5.73
0.00
0.00
3.85
1639
1877
3.649986
AGCCACACGCGCAAAGTC
61.650
61.111
5.73
0.00
44.76
3.01
1640
1878
3.952675
CAGCCACACGCGCAAAGT
61.953
61.111
5.73
0.00
44.76
2.66
1726
1974
1.495584
TTCACACTGCCGCGTTCTTC
61.496
55.000
4.92
0.00
0.00
2.87
1732
1980
1.006086
TCAATATTCACACTGCCGCG
58.994
50.000
0.00
0.00
0.00
6.46
1759
2007
6.438741
AGAACTATCAGTGGACAGAGATTTCA
59.561
38.462
0.00
0.00
0.00
2.69
1906
2162
0.257328
TTTGCACACTCCCTCCACAA
59.743
50.000
0.00
0.00
0.00
3.33
1930
2186
1.664016
CCGTGCAGAAACATCACTTGC
60.664
52.381
0.00
0.00
0.00
4.01
1985
2241
5.010112
TGACAGTGTAACAGAGAAGGAAGAG
59.990
44.000
0.00
0.00
41.43
2.85
2014
2270
5.824904
ATTGAGCAGGTTATGACAATGTC
57.175
39.130
6.41
6.41
36.66
3.06
2496
2755
7.770897
ACTTCAAGATTCAGTCACAGTTTAGTT
59.229
33.333
0.00
0.00
0.00
2.24
2547
2808
9.341899
GTCATACCTGAAAAACATCAACAATAC
57.658
33.333
0.00
0.00
31.85
1.89
2573
2837
0.721718
CTTCAGGTTTAAGCGCCTCG
59.278
55.000
2.29
0.00
31.73
4.63
2577
2841
1.001815
TGCAACTTCAGGTTTAAGCGC
60.002
47.619
0.00
0.00
35.74
5.92
2603
2867
1.132849
TGGTCCCTCACCTCTGAAAGA
60.133
52.381
0.00
0.00
46.98
2.52
2755
3019
6.017192
ACCTACCAAGTCTCTCAAGTATTCA
58.983
40.000
0.00
0.00
0.00
2.57
2833
3097
4.492604
GCAGCTTGGTGGTGGTTA
57.507
55.556
1.97
0.00
43.78
2.85
3064
3328
7.882179
ACAACTTGAACACTTAGTGAGTTTTT
58.118
30.769
20.07
1.89
36.10
1.94
3178
3443
7.617723
ACTTGCATTCCTAATTATGGGTTTGTA
59.382
33.333
0.00
0.00
0.00
2.41
3180
3445
6.877236
ACTTGCATTCCTAATTATGGGTTTG
58.123
36.000
0.00
0.00
0.00
2.93
3181
3446
7.330262
CAACTTGCATTCCTAATTATGGGTTT
58.670
34.615
0.00
0.00
0.00
3.27
3272
3544
4.765339
GGTGGTTTACTTCCTGCTAATTGT
59.235
41.667
0.00
0.00
0.00
2.71
3318
3590
4.441079
GGGATGAAAGTGGCTGAATCAATG
60.441
45.833
0.00
0.00
0.00
2.82
3326
3598
1.547372
CAAAGGGGATGAAAGTGGCTG
59.453
52.381
0.00
0.00
0.00
4.85
3398
3670
4.406456
TGCAGGTACATTTTGTCCTTGAT
58.594
39.130
0.00
0.00
29.55
2.57
3514
3796
7.205297
CCAACAAATGAAACTTCAGTGAAGAT
58.795
34.615
34.16
22.81
41.71
2.40
3520
3802
5.343307
AAGCCAACAAATGAAACTTCAGT
57.657
34.783
0.00
0.00
41.08
3.41
3521
3803
4.442073
CGAAGCCAACAAATGAAACTTCAG
59.558
41.667
0.00
0.00
41.08
3.02
3522
3804
4.142271
ACGAAGCCAACAAATGAAACTTCA
60.142
37.500
0.00
0.00
42.14
3.02
3523
3805
4.359706
ACGAAGCCAACAAATGAAACTTC
58.640
39.130
0.00
0.00
0.00
3.01
3524
3806
4.385358
ACGAAGCCAACAAATGAAACTT
57.615
36.364
0.00
0.00
0.00
2.66
3525
3807
4.097892
AGAACGAAGCCAACAAATGAAACT
59.902
37.500
0.00
0.00
0.00
2.66
3526
3808
4.359706
AGAACGAAGCCAACAAATGAAAC
58.640
39.130
0.00
0.00
0.00
2.78
3527
3809
4.097135
TGAGAACGAAGCCAACAAATGAAA
59.903
37.500
0.00
0.00
0.00
2.69
3528
3810
3.629855
TGAGAACGAAGCCAACAAATGAA
59.370
39.130
0.00
0.00
0.00
2.57
3529
3811
3.210227
TGAGAACGAAGCCAACAAATGA
58.790
40.909
0.00
0.00
0.00
2.57
3530
3812
3.624326
TGAGAACGAAGCCAACAAATG
57.376
42.857
0.00
0.00
0.00
2.32
3531
3813
4.647424
TTTGAGAACGAAGCCAACAAAT
57.353
36.364
0.00
0.00
0.00
2.32
3532
3814
4.358851
CATTTGAGAACGAAGCCAACAAA
58.641
39.130
0.00
0.00
0.00
2.83
3533
3815
3.243367
CCATTTGAGAACGAAGCCAACAA
60.243
43.478
0.00
0.00
0.00
2.83
3534
3816
2.293122
CCATTTGAGAACGAAGCCAACA
59.707
45.455
0.00
0.00
0.00
3.33
3544
3826
1.234821
TGCACGTCCCATTTGAGAAC
58.765
50.000
0.00
0.00
0.00
3.01
3563
3845
7.287696
ACCGATCAAAATATAAGGGCAAAAGAT
59.712
33.333
0.00
0.00
0.00
2.40
3567
3849
6.783708
AACCGATCAAAATATAAGGGCAAA
57.216
33.333
0.00
0.00
0.00
3.68
3568
3850
7.558444
AGTTAACCGATCAAAATATAAGGGCAA
59.442
33.333
0.88
0.00
0.00
4.52
3587
3869
8.912658
GCAAATGCTTTCTTACTTTAGTTAACC
58.087
33.333
0.88
0.00
38.21
2.85
3677
3959
1.212935
GCCCCACATGACATCCTTACT
59.787
52.381
0.00
0.00
0.00
2.24
3685
3967
2.605607
CCTCAGGCCCCACATGACA
61.606
63.158
0.00
0.00
0.00
3.58
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.