Multiple sequence alignment - TraesCS3D01G145700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G145700 chr3D 100.000 3459 0 0 1 3459 109740805 109737347 0.000000e+00 6388.0
1 TraesCS3D01G145700 chr3D 92.500 280 20 1 2597 2875 109577931 109577652 1.930000e-107 399.0
2 TraesCS3D01G145700 chr3A 89.933 745 62 9 1742 2481 120693436 120694172 0.000000e+00 948.0
3 TraesCS3D01G145700 chr3A 85.685 496 40 10 830 1316 120691967 120692440 8.620000e-136 494.0
4 TraesCS3D01G145700 chr3A 95.205 292 14 0 1428 1719 120693091 120693382 2.430000e-126 462.0
5 TraesCS3D01G145700 chr7B 84.689 836 109 11 2597 3427 601387319 601388140 0.000000e+00 817.0
6 TraesCS3D01G145700 chr7B 78.902 820 112 31 1 797 680094199 680094980 1.850000e-137 499.0
7 TraesCS3D01G145700 chr1D 83.734 873 128 13 2596 3459 233324178 233323311 0.000000e+00 813.0
8 TraesCS3D01G145700 chr1D 79.625 746 124 21 2708 3439 486408014 486408745 8.560000e-141 510.0
9 TraesCS3D01G145700 chr3B 82.057 875 138 15 2597 3459 566993926 566993059 0.000000e+00 728.0
10 TraesCS3D01G145700 chr3B 92.843 503 29 1 829 1324 160824798 160824296 0.000000e+00 723.0
11 TraesCS3D01G145700 chr3B 91.885 419 18 5 1323 1738 160823757 160823352 3.870000e-159 571.0
12 TraesCS3D01G145700 chr3B 90.339 383 17 10 1816 2187 160823348 160822975 5.190000e-133 484.0
13 TraesCS3D01G145700 chr3B 91.373 255 16 4 2182 2436 160801811 160801563 9.190000e-91 344.0
14 TraesCS3D01G145700 chr3B 80.687 233 35 5 1 224 736443972 736443741 4.590000e-39 172.0
15 TraesCS3D01G145700 chr7D 81.622 740 114 17 2732 3459 118394351 118393622 8.270000e-166 593.0
16 TraesCS3D01G145700 chr1B 81.502 719 115 15 2732 3441 28298387 28299096 2.990000e-160 575.0
17 TraesCS3D01G145700 chr6B 90.547 402 35 3 2669 3068 703828876 703829276 2.360000e-146 529.0
18 TraesCS3D01G145700 chr2D 87.216 352 43 2 965 1315 621750286 621750636 1.930000e-107 399.0
19 TraesCS3D01G145700 chr2D 89.177 231 25 0 2015 2245 621751918 621752148 4.370000e-74 289.0
20 TraesCS3D01G145700 chr2D 77.457 173 36 3 1145 1314 580267009 580266837 2.200000e-17 100.0
21 TraesCS3D01G145700 chr2D 97.297 37 1 0 1240 1276 92882344 92882380 2.880000e-06 63.9
22 TraesCS3D01G145700 chr2A 86.723 354 38 7 968 1315 753439377 753439727 5.420000e-103 385.0
23 TraesCS3D01G145700 chr2A 89.177 231 25 0 2015 2245 753440976 753441206 4.370000e-74 289.0
24 TraesCS3D01G145700 chr2B 86.441 354 39 7 968 1315 763498211 763498561 2.520000e-101 379.0
25 TraesCS3D01G145700 chr2B 88.745 231 24 1 2015 2245 763503417 763503645 7.310000e-72 281.0
26 TraesCS3D01G145700 chr6D 83.569 353 51 5 968 1315 1561741 1561391 1.200000e-84 324.0
27 TraesCS3D01G145700 chr6D 82.971 276 40 5 1441 1714 1560646 1560376 3.450000e-60 243.0
28 TraesCS3D01G145700 chr6A 83.286 353 51 6 968 1315 1090534 1090883 5.570000e-83 318.0
29 TraesCS3D01G145700 chr5A 79.091 220 21 9 394 603 699312758 699312554 1.010000e-25 128.0
30 TraesCS3D01G145700 chr5D 90.323 62 6 0 538 599 431276285 431276346 7.960000e-12 82.4
31 TraesCS3D01G145700 chr4A 95.000 40 2 0 1607 1646 621470287 621470248 2.880000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G145700 chr3D 109737347 109740805 3458 True 6388.000000 6388 100.000000 1 3459 1 chr3D.!!$R2 3458
1 TraesCS3D01G145700 chr3A 120691967 120694172 2205 False 634.666667 948 90.274333 830 2481 3 chr3A.!!$F1 1651
2 TraesCS3D01G145700 chr7B 601387319 601388140 821 False 817.000000 817 84.689000 2597 3427 1 chr7B.!!$F1 830
3 TraesCS3D01G145700 chr7B 680094199 680094980 781 False 499.000000 499 78.902000 1 797 1 chr7B.!!$F2 796
4 TraesCS3D01G145700 chr1D 233323311 233324178 867 True 813.000000 813 83.734000 2596 3459 1 chr1D.!!$R1 863
5 TraesCS3D01G145700 chr1D 486408014 486408745 731 False 510.000000 510 79.625000 2708 3439 1 chr1D.!!$F1 731
6 TraesCS3D01G145700 chr3B 566993059 566993926 867 True 728.000000 728 82.057000 2597 3459 1 chr3B.!!$R2 862
7 TraesCS3D01G145700 chr3B 160822975 160824798 1823 True 592.666667 723 91.689000 829 2187 3 chr3B.!!$R4 1358
8 TraesCS3D01G145700 chr7D 118393622 118394351 729 True 593.000000 593 81.622000 2732 3459 1 chr7D.!!$R1 727
9 TraesCS3D01G145700 chr1B 28298387 28299096 709 False 575.000000 575 81.502000 2732 3441 1 chr1B.!!$F1 709
10 TraesCS3D01G145700 chr2D 621750286 621752148 1862 False 344.000000 399 88.196500 965 2245 2 chr2D.!!$F2 1280
11 TraesCS3D01G145700 chr2A 753439377 753441206 1829 False 337.000000 385 87.950000 968 2245 2 chr2A.!!$F1 1277
12 TraesCS3D01G145700 chr6D 1560376 1561741 1365 True 283.500000 324 83.270000 968 1714 2 chr6D.!!$R1 746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 640 0.038526 ACGAGGGACTTGCAGTAACG 60.039 55.0 0.0 0.0 45.68 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2505 3479 0.03601 CCATCGCCAGTTTCTCCAGT 60.036 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.968528 ATGAATCGTCTATAGGACACTCC 57.031 43.478 0.00 0.00 44.70 3.85
58 62 7.566658 AGATTATCTCTCCCTAAATCCAAGG 57.433 40.000 0.00 0.00 0.00 3.61
61 65 1.143889 CTCTCCCTAAATCCAAGGCCC 59.856 57.143 0.00 0.00 32.34 5.80
64 74 0.562674 CCCTAAATCCAAGGCCCCAT 59.437 55.000 0.00 0.00 32.34 4.00
68 78 2.755952 AAATCCAAGGCCCCATCTAC 57.244 50.000 0.00 0.00 0.00 2.59
73 83 1.619363 AAGGCCCCATCTACCAGCA 60.619 57.895 0.00 0.00 0.00 4.41
77 87 1.689258 GGCCCCATCTACCAGCAAAAT 60.689 52.381 0.00 0.00 0.00 1.82
91 101 7.425577 ACCAGCAAAATTGAAAGAATAAAGC 57.574 32.000 0.00 0.00 0.00 3.51
128 138 9.203421 TCTATAATTGTAGATATGCAACAACCG 57.797 33.333 7.77 0.00 0.00 4.44
134 144 6.342111 TGTAGATATGCAACAACCGAACATA 58.658 36.000 0.00 0.00 0.00 2.29
135 145 6.989759 TGTAGATATGCAACAACCGAACATAT 59.010 34.615 0.00 0.00 36.80 1.78
144 154 6.510157 GCAACAACCGAACATATGTAGATCTG 60.510 42.308 9.21 7.14 0.00 2.90
145 155 6.465439 ACAACCGAACATATGTAGATCTGA 57.535 37.500 9.21 0.00 0.00 3.27
146 156 6.273825 ACAACCGAACATATGTAGATCTGAC 58.726 40.000 9.21 0.55 0.00 3.51
147 157 6.096987 ACAACCGAACATATGTAGATCTGACT 59.903 38.462 9.21 0.00 0.00 3.41
165 175 1.205655 ACTGTGATGTGGATGAGGTCG 59.794 52.381 0.00 0.00 0.00 4.79
174 184 1.154205 GGATGAGGTCGCACGAATGG 61.154 60.000 0.00 0.00 0.00 3.16
179 189 3.195698 GTCGCACGAATGGGGCTC 61.196 66.667 0.00 0.00 40.14 4.70
210 220 1.751351 CCTGTCGGCTTCATCTAGTCA 59.249 52.381 0.00 0.00 0.00 3.41
211 221 2.363680 CCTGTCGGCTTCATCTAGTCAT 59.636 50.000 0.00 0.00 0.00 3.06
212 222 3.379240 CTGTCGGCTTCATCTAGTCATG 58.621 50.000 0.00 0.00 0.00 3.07
219 229 3.490933 GCTTCATCTAGTCATGCGGTACA 60.491 47.826 0.00 0.00 0.00 2.90
231 241 2.742372 GGTACACCGCCAGCAGTG 60.742 66.667 4.47 4.47 39.93 3.66
240 250 1.642037 CGCCAGCAGTGAGAACATGG 61.642 60.000 0.00 0.00 0.00 3.66
257 267 1.131638 TGGTCCATCTAGATGCCCAC 58.868 55.000 26.45 20.73 35.07 4.61
271 281 2.520458 CCACCCACCTTGCCTTCA 59.480 61.111 0.00 0.00 0.00 3.02
289 299 0.535328 CAGAGGAGATGCATGGCCAG 60.535 60.000 13.05 4.54 0.00 4.85
291 301 0.250381 GAGGAGATGCATGGCCAGAG 60.250 60.000 13.05 7.72 0.00 3.35
316 326 4.899239 CGGTCATGGCGGAGAGGC 62.899 72.222 0.00 0.00 46.95 4.70
324 334 2.902846 GCGGAGAGGCGAGCTAGA 60.903 66.667 0.00 0.00 0.00 2.43
329 339 0.464735 GAGAGGCGAGCTAGAGGACA 60.465 60.000 0.00 0.00 0.00 4.02
330 340 0.184933 AGAGGCGAGCTAGAGGACAT 59.815 55.000 0.00 0.00 0.00 3.06
338 348 4.744570 CGAGCTAGAGGACATAAACAACA 58.255 43.478 0.00 0.00 0.00 3.33
340 350 5.812642 CGAGCTAGAGGACATAAACAACAAT 59.187 40.000 0.00 0.00 0.00 2.71
341 351 6.237942 CGAGCTAGAGGACATAAACAACAATG 60.238 42.308 0.00 0.00 0.00 2.82
342 352 5.882557 AGCTAGAGGACATAAACAACAATGG 59.117 40.000 0.00 0.00 0.00 3.16
347 357 3.447229 GGACATAAACAACAATGGGGGAG 59.553 47.826 0.00 0.00 0.00 4.30
350 362 0.863956 AAACAACAATGGGGGAGGGA 59.136 50.000 0.00 0.00 0.00 4.20
360 372 1.083912 TGGGGGAGGGAAAAGAGGTAT 59.916 52.381 0.00 0.00 0.00 2.73
382 394 2.573369 GACTCACCTCGTGGCTATAGA 58.427 52.381 3.21 0.00 36.63 1.98
393 405 3.313012 TGGCTATAGACACACACACAC 57.687 47.619 3.44 0.00 0.00 3.82
394 406 2.630580 TGGCTATAGACACACACACACA 59.369 45.455 3.44 0.00 0.00 3.72
395 407 2.993899 GGCTATAGACACACACACACAC 59.006 50.000 3.21 0.00 0.00 3.82
396 408 3.554129 GGCTATAGACACACACACACACA 60.554 47.826 3.21 0.00 0.00 3.72
410 422 1.067565 ACACACACGCATAGAGGACTG 60.068 52.381 0.00 0.00 0.00 3.51
416 428 1.751563 GCATAGAGGACTGGGAGGC 59.248 63.158 0.00 0.00 0.00 4.70
422 434 3.551407 GGACTGGGAGGCGGGATC 61.551 72.222 0.00 0.00 0.00 3.36
447 459 1.005394 AATCTTCGTTGACGGCCGT 60.005 52.632 34.89 34.89 40.29 5.68
465 477 4.680237 CGCGGTGAGGGCAGACAA 62.680 66.667 0.00 0.00 0.00 3.18
485 502 3.771577 ACCTCTTGTTCTTCGGTGAAT 57.228 42.857 0.00 0.00 0.00 2.57
491 511 4.039973 TCTTGTTCTTCGGTGAATAGGTGT 59.960 41.667 0.00 0.00 0.00 4.16
497 517 2.803956 TCGGTGAATAGGTGTGAGAGT 58.196 47.619 0.00 0.00 0.00 3.24
505 525 0.833834 AGGTGTGAGAGTGTGAGGGG 60.834 60.000 0.00 0.00 0.00 4.79
511 531 0.543749 GAGAGTGTGAGGGGATTGGG 59.456 60.000 0.00 0.00 0.00 4.12
518 538 3.023735 AGGGGATTGGGGTGGAGC 61.024 66.667 0.00 0.00 0.00 4.70
600 622 0.896226 AGGAGTCAAACCCTAGCGAC 59.104 55.000 0.00 0.00 0.00 5.19
601 623 0.458025 GGAGTCAAACCCTAGCGACG 60.458 60.000 0.00 0.00 33.56 5.12
602 624 0.524862 GAGTCAAACCCTAGCGACGA 59.475 55.000 0.00 0.00 33.56 4.20
609 631 3.921521 CCTAGCGACGAGGGACTT 58.078 61.111 0.00 0.00 41.55 3.01
611 633 1.226717 CTAGCGACGAGGGACTTGC 60.227 63.158 0.00 0.00 45.68 4.01
612 634 1.934220 CTAGCGACGAGGGACTTGCA 61.934 60.000 0.00 0.00 45.68 4.08
613 635 1.934220 TAGCGACGAGGGACTTGCAG 61.934 60.000 0.00 0.00 45.68 4.41
614 636 2.651361 CGACGAGGGACTTGCAGT 59.349 61.111 0.00 0.00 45.68 4.40
615 637 1.880894 CGACGAGGGACTTGCAGTA 59.119 57.895 0.00 0.00 45.68 2.74
616 638 0.242825 CGACGAGGGACTTGCAGTAA 59.757 55.000 0.00 0.00 45.68 2.24
617 639 1.711206 GACGAGGGACTTGCAGTAAC 58.289 55.000 0.00 0.00 45.68 2.50
618 640 0.038526 ACGAGGGACTTGCAGTAACG 60.039 55.000 0.00 0.00 45.68 3.18
619 641 0.736325 CGAGGGACTTGCAGTAACGG 60.736 60.000 0.00 0.00 41.55 4.44
620 642 0.391263 GAGGGACTTGCAGTAACGGG 60.391 60.000 0.00 0.00 41.55 5.28
621 643 1.376812 GGGACTTGCAGTAACGGGG 60.377 63.158 0.00 0.00 0.00 5.73
622 644 1.675219 GGACTTGCAGTAACGGGGA 59.325 57.895 0.00 0.00 0.00 4.81
623 645 0.252197 GGACTTGCAGTAACGGGGAT 59.748 55.000 0.00 0.00 0.00 3.85
624 646 1.369625 GACTTGCAGTAACGGGGATG 58.630 55.000 0.00 0.00 0.00 3.51
625 647 0.981183 ACTTGCAGTAACGGGGATGA 59.019 50.000 0.00 0.00 0.00 2.92
626 648 1.349688 ACTTGCAGTAACGGGGATGAA 59.650 47.619 0.00 0.00 0.00 2.57
627 649 1.737793 CTTGCAGTAACGGGGATGAAC 59.262 52.381 0.00 0.00 0.00 3.18
628 650 0.981183 TGCAGTAACGGGGATGAACT 59.019 50.000 0.00 0.00 0.00 3.01
629 651 2.181125 TGCAGTAACGGGGATGAACTA 58.819 47.619 0.00 0.00 0.00 2.24
630 652 2.769663 TGCAGTAACGGGGATGAACTAT 59.230 45.455 0.00 0.00 0.00 2.12
640 662 7.900782 ACGGGGATGAACTATATAAAAATCG 57.099 36.000 0.00 0.00 0.00 3.34
641 663 7.447594 ACGGGGATGAACTATATAAAAATCGT 58.552 34.615 0.00 0.00 0.00 3.73
657 679 9.697990 ATAAAAATCGTACCAAAAATACCCCTA 57.302 29.630 0.00 0.00 0.00 3.53
660 682 8.419922 AAATCGTACCAAAAATACCCCTAAAA 57.580 30.769 0.00 0.00 0.00 1.52
669 691 7.546316 CCAAAAATACCCCTAAAATTTGTACCG 59.454 37.037 0.00 0.00 0.00 4.02
677 699 6.824704 CCCCTAAAATTTGTACCGAGAATACA 59.175 38.462 0.00 0.00 0.00 2.29
678 700 7.501225 CCCCTAAAATTTGTACCGAGAATACAT 59.499 37.037 0.00 0.00 32.70 2.29
701 723 8.882736 ACATTTGAAAATTTTGAGAGGAAACAC 58.117 29.630 8.47 0.00 0.00 3.32
718 740 5.395214 GGAAACACCTGGTCTGTTTGAAATT 60.395 40.000 17.18 0.00 41.01 1.82
745 767 2.002505 TTTCAAAAATGCCCCTCGGA 57.997 45.000 0.00 0.00 0.00 4.55
746 768 2.230130 TTCAAAAATGCCCCTCGGAT 57.770 45.000 0.00 0.00 0.00 4.18
747 769 1.473258 TCAAAAATGCCCCTCGGATG 58.527 50.000 0.00 0.00 0.00 3.51
748 770 1.185315 CAAAAATGCCCCTCGGATGT 58.815 50.000 0.00 0.00 0.00 3.06
751 773 0.748005 AAATGCCCCTCGGATGTTCG 60.748 55.000 0.00 0.00 0.00 3.95
759 781 4.741342 CCCCTCGGATGTTCGTATAATAC 58.259 47.826 0.00 0.00 0.00 1.89
762 784 5.278610 CCCTCGGATGTTCGTATAATACACA 60.279 44.000 0.00 0.00 0.00 3.72
764 786 6.308041 CCTCGGATGTTCGTATAATACACATG 59.692 42.308 0.00 0.00 28.92 3.21
768 790 5.876576 TGTTCGTATAATACACATGACGC 57.123 39.130 0.00 0.00 0.00 5.19
772 794 4.037089 TCGTATAATACACATGACGCCAGT 59.963 41.667 0.00 0.00 0.00 4.00
773 795 5.239087 TCGTATAATACACATGACGCCAGTA 59.761 40.000 0.00 0.00 0.00 2.74
776 798 7.913821 CGTATAATACACATGACGCCAGTATAT 59.086 37.037 0.00 0.00 0.00 0.86
793 815 5.121298 CAGTATATTGCATTGGATCTGGACG 59.879 44.000 0.00 0.00 0.00 4.79
797 819 0.815615 GCATTGGATCTGGACGGTCC 60.816 60.000 20.36 20.36 36.96 4.46
798 820 0.541392 CATTGGATCTGGACGGTCCA 59.459 55.000 27.17 27.17 45.98 4.02
806 828 1.294138 TGGACGGTCCATTTCGACC 59.706 57.895 25.53 0.00 42.67 4.79
811 833 2.690326 GGTCCATTTCGACCGGATG 58.310 57.895 9.46 0.00 42.88 3.51
812 834 1.436983 GGTCCATTTCGACCGGATGC 61.437 60.000 9.46 0.00 42.88 3.91
813 835 0.742990 GTCCATTTCGACCGGATGCA 60.743 55.000 9.46 0.00 0.00 3.96
814 836 0.742990 TCCATTTCGACCGGATGCAC 60.743 55.000 9.46 0.00 0.00 4.57
815 837 1.714899 CCATTTCGACCGGATGCACC 61.715 60.000 9.46 0.00 0.00 5.01
827 849 2.695359 GGATGCACCGTAAAAGACTCA 58.305 47.619 0.00 0.00 0.00 3.41
851 874 1.168714 CAAGGGCAAGAGCTTGGTAC 58.831 55.000 11.78 0.00 40.74 3.34
852 875 0.771127 AAGGGCAAGAGCTTGGTACA 59.229 50.000 11.78 0.00 40.74 2.90
861 884 1.004277 GAGCTTGGTACACCATTGGGA 59.996 52.381 7.78 0.00 46.97 4.37
865 888 2.577606 TGGTACACCATTGGGACAAG 57.422 50.000 7.78 0.00 42.87 3.16
918 953 2.820787 AGTAAACCTGTCCACTCTCGAG 59.179 50.000 5.93 5.93 0.00 4.04
944 979 1.091771 CAGCCGCGGTGAATGAGAAT 61.092 55.000 28.70 0.00 32.22 2.40
1023 1060 1.212616 GCATAGCTTGCCGACTAGTG 58.787 55.000 0.00 0.00 46.15 2.74
1024 1061 1.471676 GCATAGCTTGCCGACTAGTGT 60.472 52.381 0.00 0.00 46.15 3.55
1070 1110 1.202568 CACTCAGCGTCAAAGTGCG 59.797 57.895 0.00 0.00 34.55 5.34
1314 1372 4.705110 TCACCATGGATTTCATCGGTAT 57.295 40.909 21.47 0.00 36.33 2.73
1337 2002 2.357760 TTTGGCGCCGAGGTACAC 60.358 61.111 23.90 0.00 0.00 2.90
1419 2343 0.669318 TCTTTCGATCGGCGTTGCTT 60.669 50.000 16.41 0.00 41.80 3.91
1420 2344 0.165944 CTTTCGATCGGCGTTGCTTT 59.834 50.000 16.41 0.00 41.80 3.51
1421 2345 0.110419 TTTCGATCGGCGTTGCTTTG 60.110 50.000 16.41 0.00 41.80 2.77
1422 2346 2.507322 TTCGATCGGCGTTGCTTTGC 62.507 55.000 16.41 0.00 41.80 3.68
1423 2347 2.560861 GATCGGCGTTGCTTTGCA 59.439 55.556 6.85 0.00 36.47 4.08
1424 2348 1.797537 GATCGGCGTTGCTTTGCAC 60.798 57.895 6.85 0.00 38.71 4.57
1611 2540 2.435059 GAGTGCTGTTCGAGGCCC 60.435 66.667 0.00 0.00 0.00 5.80
1703 2632 5.277538 CGACTTCCTCAAGAAACCAAAGAAG 60.278 44.000 0.00 0.00 36.43 2.85
1721 2650 0.733909 AGTTCGGTAAGCGTTACGGC 60.734 55.000 6.94 0.00 37.00 5.68
1735 2664 0.820891 TACGGCGCCCTAGGTTAGAG 60.821 60.000 23.46 4.79 0.00 2.43
1738 2667 1.227292 GCGCCCTAGGTTAGAGTGC 60.227 63.158 8.29 6.39 33.01 4.40
1740 2669 0.753262 CGCCCTAGGTTAGAGTGCAT 59.247 55.000 8.29 0.00 0.00 3.96
1741 2670 1.269831 CGCCCTAGGTTAGAGTGCATC 60.270 57.143 8.29 0.00 0.00 3.91
1751 2711 4.507710 GTTAGAGTGCATCAGTTCCATGA 58.492 43.478 0.00 0.00 0.00 3.07
1755 2715 1.470098 GTGCATCAGTTCCATGACCAC 59.530 52.381 0.00 0.00 31.67 4.16
1757 2717 1.675714 GCATCAGTTCCATGACCACGA 60.676 52.381 0.00 0.00 30.46 4.35
1759 2719 0.038618 TCAGTTCCATGACCACGACG 60.039 55.000 0.00 0.00 0.00 5.12
1788 2748 3.827008 AGAATTGCTTGCTCGGATCTA 57.173 42.857 0.00 0.00 0.00 1.98
1789 2749 4.142609 AGAATTGCTTGCTCGGATCTAA 57.857 40.909 0.00 0.00 0.00 2.10
1792 2752 2.299993 TGCTTGCTCGGATCTAACTG 57.700 50.000 0.00 0.00 0.00 3.16
1799 2759 2.479049 GCTCGGATCTAACTGCACGTAA 60.479 50.000 0.00 0.00 0.00 3.18
1802 2762 2.734175 CGGATCTAACTGCACGTAAGCA 60.734 50.000 0.26 0.26 43.35 3.91
1809 2769 1.668867 TGCACGTAAGCAGCCAGTA 59.331 52.632 0.00 0.00 40.11 2.74
1823 2783 2.099921 AGCCAGTAGAATGTAGCTGTCG 59.900 50.000 0.00 0.00 0.00 4.35
1867 2827 4.533311 ACCAGATGCAGATCCCAAAAATTT 59.467 37.500 0.00 0.00 0.00 1.82
1868 2828 4.873827 CCAGATGCAGATCCCAAAAATTTG 59.126 41.667 0.00 0.00 37.90 2.32
1869 2829 5.337733 CCAGATGCAGATCCCAAAAATTTGA 60.338 40.000 7.44 0.00 40.55 2.69
1870 2830 5.810587 CAGATGCAGATCCCAAAAATTTGAG 59.189 40.000 7.44 0.00 40.55 3.02
1875 2838 5.634896 CAGATCCCAAAAATTTGAGTCGAG 58.365 41.667 7.44 0.00 40.55 4.04
1913 2876 2.680841 CGATCCGCCCATTCTTAAACAA 59.319 45.455 0.00 0.00 0.00 2.83
1920 2883 3.612423 GCCCATTCTTAAACAAATCGTGC 59.388 43.478 0.00 0.00 0.00 5.34
1939 2902 2.100252 TGCCAGCCGAGTAGTTGTATAC 59.900 50.000 0.00 0.00 0.00 1.47
1973 2947 7.913821 ACTTAGAATTGTCAACTTCGTTTTTCC 59.086 33.333 0.00 0.00 0.00 3.13
1974 2948 6.202516 AGAATTGTCAACTTCGTTTTTCCA 57.797 33.333 0.00 0.00 0.00 3.53
1975 2949 6.805713 AGAATTGTCAACTTCGTTTTTCCAT 58.194 32.000 0.00 0.00 0.00 3.41
1977 2951 7.763985 AGAATTGTCAACTTCGTTTTTCCATTT 59.236 29.630 0.00 0.00 0.00 2.32
1978 2952 7.841915 ATTGTCAACTTCGTTTTTCCATTTT 57.158 28.000 0.00 0.00 0.00 1.82
1979 2953 7.659652 TTGTCAACTTCGTTTTTCCATTTTT 57.340 28.000 0.00 0.00 0.00 1.94
2051 3025 2.488087 CTTCGTCGAAGCTCCGGGTT 62.488 60.000 21.19 0.00 32.78 4.11
2282 3256 2.099592 GTCGTGTATCGGTGTATGGGAA 59.900 50.000 0.00 0.00 40.32 3.97
2298 3272 0.792640 GGAATATCGACGCCTGCATG 59.207 55.000 0.00 0.00 0.00 4.06
2313 3287 3.068590 CCTGCATGGTTCAGTTCTGTTTT 59.931 43.478 0.00 0.00 0.00 2.43
2314 3288 4.441913 CCTGCATGGTTCAGTTCTGTTTTT 60.442 41.667 0.00 0.00 0.00 1.94
2335 3309 3.402628 TTAACCCACTGTTCAGCTCTC 57.597 47.619 0.00 0.00 38.42 3.20
2372 3346 7.503566 TGTGATGAACAATCTTCTTTCTTTCCT 59.496 33.333 0.00 0.00 35.24 3.36
2373 3347 8.355913 GTGATGAACAATCTTCTTTCTTTCCTT 58.644 33.333 0.00 0.00 36.15 3.36
2374 3348 8.917088 TGATGAACAATCTTCTTTCTTTCCTTT 58.083 29.630 0.00 0.00 36.15 3.11
2400 3374 6.741992 TGTTTGAGCGAATATGAACAATCT 57.258 33.333 0.00 0.00 0.00 2.40
2402 3376 7.022979 TGTTTGAGCGAATATGAACAATCTTG 58.977 34.615 0.00 0.00 0.00 3.02
2407 3381 6.722301 AGCGAATATGAACAATCTTGTCATG 58.278 36.000 13.50 0.00 41.31 3.07
2409 3383 7.066163 AGCGAATATGAACAATCTTGTCATGAA 59.934 33.333 0.00 0.00 41.31 2.57
2462 3436 2.693762 CGGCCCACATGAAGCACAG 61.694 63.158 0.00 0.00 0.00 3.66
2466 3440 1.885887 GCCCACATGAAGCACAGTTAA 59.114 47.619 0.00 0.00 0.00 2.01
2476 3450 4.574828 TGAAGCACAGTTAACCTTCTTCAC 59.425 41.667 18.24 2.66 35.12 3.18
2481 3455 5.123227 CACAGTTAACCTTCTTCACTGGAA 58.877 41.667 0.88 0.00 39.39 3.53
2482 3456 5.007724 CACAGTTAACCTTCTTCACTGGAAC 59.992 44.000 0.88 0.00 39.39 3.62
2483 3457 4.515567 CAGTTAACCTTCTTCACTGGAACC 59.484 45.833 0.88 0.00 32.74 3.62
2484 3458 2.658807 AACCTTCTTCACTGGAACCC 57.341 50.000 0.00 0.00 0.00 4.11
2485 3459 0.771755 ACCTTCTTCACTGGAACCCC 59.228 55.000 0.00 0.00 0.00 4.95
2486 3460 0.321653 CCTTCTTCACTGGAACCCCG 60.322 60.000 0.00 0.00 34.29 5.73
2487 3461 0.955919 CTTCTTCACTGGAACCCCGC 60.956 60.000 0.00 0.00 34.29 6.13
2488 3462 1.701031 TTCTTCACTGGAACCCCGCA 61.701 55.000 0.00 0.00 34.29 5.69
2489 3463 1.228124 CTTCACTGGAACCCCGCAA 60.228 57.895 0.00 0.00 34.29 4.85
2490 3464 0.821711 CTTCACTGGAACCCCGCAAA 60.822 55.000 0.00 0.00 34.29 3.68
2491 3465 0.395862 TTCACTGGAACCCCGCAAAA 60.396 50.000 0.00 0.00 34.29 2.44
2492 3466 0.395862 TCACTGGAACCCCGCAAAAA 60.396 50.000 0.00 0.00 34.29 1.94
2515 3489 5.836821 AAAACCTTCTTCACTGGAGAAAC 57.163 39.130 1.28 0.00 0.00 2.78
2516 3490 4.779993 AACCTTCTTCACTGGAGAAACT 57.220 40.909 1.28 0.00 0.00 2.66
2517 3491 4.078639 ACCTTCTTCACTGGAGAAACTG 57.921 45.455 1.28 0.00 0.00 3.16
2518 3492 3.181450 ACCTTCTTCACTGGAGAAACTGG 60.181 47.826 1.28 2.41 0.00 4.00
2519 3493 2.550830 TCTTCACTGGAGAAACTGGC 57.449 50.000 0.00 0.00 0.00 4.85
2520 3494 1.151668 CTTCACTGGAGAAACTGGCG 58.848 55.000 0.00 0.00 0.00 5.69
2521 3495 0.756294 TTCACTGGAGAAACTGGCGA 59.244 50.000 0.00 0.00 0.00 5.54
2522 3496 0.976641 TCACTGGAGAAACTGGCGAT 59.023 50.000 0.00 0.00 0.00 4.58
2523 3497 1.081892 CACTGGAGAAACTGGCGATG 58.918 55.000 0.00 0.00 0.00 3.84
2524 3498 0.036010 ACTGGAGAAACTGGCGATGG 60.036 55.000 0.00 0.00 0.00 3.51
2525 3499 1.372087 CTGGAGAAACTGGCGATGGC 61.372 60.000 0.00 0.00 38.90 4.40
2526 3500 1.377202 GGAGAAACTGGCGATGGCA 60.377 57.895 1.01 0.00 42.47 4.92
2527 3501 0.960364 GGAGAAACTGGCGATGGCAA 60.960 55.000 1.01 0.00 42.47 4.52
2528 3502 1.098050 GAGAAACTGGCGATGGCAAT 58.902 50.000 1.01 0.00 42.47 3.56
2529 3503 1.474077 GAGAAACTGGCGATGGCAATT 59.526 47.619 1.01 0.00 42.47 2.32
2530 3504 1.895131 AGAAACTGGCGATGGCAATTT 59.105 42.857 1.01 0.00 39.98 1.82
2531 3505 2.262211 GAAACTGGCGATGGCAATTTC 58.738 47.619 10.67 10.67 44.11 2.17
2532 3506 0.171007 AACTGGCGATGGCAATTTCG 59.829 50.000 1.01 4.68 42.47 3.46
2533 3507 0.960364 ACTGGCGATGGCAATTTCGT 60.960 50.000 10.31 0.00 42.47 3.85
2534 3508 0.171007 CTGGCGATGGCAATTTCGTT 59.829 50.000 10.31 0.00 42.47 3.85
2535 3509 0.600557 TGGCGATGGCAATTTCGTTT 59.399 45.000 10.31 0.00 42.47 3.60
2536 3510 1.000283 TGGCGATGGCAATTTCGTTTT 60.000 42.857 10.31 0.00 42.47 2.43
2537 3511 2.229062 TGGCGATGGCAATTTCGTTTTA 59.771 40.909 10.31 0.00 42.47 1.52
2538 3512 2.851824 GGCGATGGCAATTTCGTTTTAG 59.148 45.455 10.31 0.00 42.47 1.85
2539 3513 3.426963 GGCGATGGCAATTTCGTTTTAGA 60.427 43.478 10.31 0.00 42.47 2.10
2540 3514 3.786048 GCGATGGCAATTTCGTTTTAGAG 59.214 43.478 10.31 0.00 39.62 2.43
2541 3515 4.436852 GCGATGGCAATTTCGTTTTAGAGA 60.437 41.667 10.31 0.00 39.62 3.10
2542 3516 5.258622 CGATGGCAATTTCGTTTTAGAGAG 58.741 41.667 0.00 0.00 0.00 3.20
2543 3517 4.419522 TGGCAATTTCGTTTTAGAGAGC 57.580 40.909 0.00 0.00 0.00 4.09
2544 3518 3.818210 TGGCAATTTCGTTTTAGAGAGCA 59.182 39.130 0.00 0.00 0.00 4.26
2545 3519 4.277174 TGGCAATTTCGTTTTAGAGAGCAA 59.723 37.500 0.00 0.00 0.00 3.91
2546 3520 4.617223 GGCAATTTCGTTTTAGAGAGCAAC 59.383 41.667 0.00 0.00 0.00 4.17
2547 3521 5.452777 GCAATTTCGTTTTAGAGAGCAACT 58.547 37.500 0.00 0.00 0.00 3.16
2548 3522 6.348213 GGCAATTTCGTTTTAGAGAGCAACTA 60.348 38.462 0.00 0.00 0.00 2.24
2549 3523 7.075741 GCAATTTCGTTTTAGAGAGCAACTAA 58.924 34.615 0.00 0.00 0.00 2.24
2550 3524 7.750903 GCAATTTCGTTTTAGAGAGCAACTAAT 59.249 33.333 0.00 0.00 31.34 1.73
2551 3525 9.612620 CAATTTCGTTTTAGAGAGCAACTAATT 57.387 29.630 0.00 0.00 31.34 1.40
2555 3529 9.701098 TTCGTTTTAGAGAGCAACTAATTAAGA 57.299 29.630 0.00 0.00 31.34 2.10
2556 3530 9.355215 TCGTTTTAGAGAGCAACTAATTAAGAG 57.645 33.333 0.00 0.00 31.34 2.85
2557 3531 8.596380 CGTTTTAGAGAGCAACTAATTAAGAGG 58.404 37.037 0.00 0.00 31.34 3.69
2558 3532 9.438228 GTTTTAGAGAGCAACTAATTAAGAGGT 57.562 33.333 0.00 0.00 31.34 3.85
2561 3535 7.114866 AGAGAGCAACTAATTAAGAGGTACC 57.885 40.000 2.73 2.73 0.00 3.34
2562 3536 6.098552 AGAGAGCAACTAATTAAGAGGTACCC 59.901 42.308 8.74 0.00 0.00 3.69
2563 3537 5.130643 AGAGCAACTAATTAAGAGGTACCCC 59.869 44.000 8.74 0.00 0.00 4.95
2564 3538 5.037598 AGCAACTAATTAAGAGGTACCCCT 58.962 41.667 8.74 0.00 46.66 4.79
2565 3539 5.491439 AGCAACTAATTAAGAGGTACCCCTT 59.509 40.000 13.77 13.77 42.86 3.95
2566 3540 5.589050 GCAACTAATTAAGAGGTACCCCTTG 59.411 44.000 18.35 4.09 42.86 3.61
2567 3541 5.369409 ACTAATTAAGAGGTACCCCTTGC 57.631 43.478 18.35 0.00 42.86 4.01
2568 3542 3.277142 AATTAAGAGGTACCCCTTGCG 57.723 47.619 18.35 0.00 42.86 4.85
2569 3543 0.906775 TTAAGAGGTACCCCTTGCGG 59.093 55.000 18.35 0.00 42.86 5.69
2594 3568 3.403057 CGCAAGGGTCGTGTCGTG 61.403 66.667 0.00 0.00 0.00 4.35
2601 3575 1.342174 AGGGTCGTGTCGTGTTGTTAT 59.658 47.619 0.00 0.00 0.00 1.89
2614 3588 3.375299 GTGTTGTTATGATCCCTGTCAGC 59.625 47.826 0.00 0.00 0.00 4.26
2635 3609 2.224159 GCCACAAGAGGAGGGGACA 61.224 63.158 0.00 0.00 0.00 4.02
2639 3613 1.142870 CACAAGAGGAGGGGACACAAA 59.857 52.381 0.00 0.00 0.00 2.83
2645 3619 1.152830 GAGGGGACACAAAGCCCAA 59.847 57.895 0.00 0.00 46.57 4.12
2650 3624 1.691434 GGGACACAAAGCCCAATGAAA 59.309 47.619 0.00 0.00 44.07 2.69
2677 3651 1.165270 GAAGGCACAACAACCGCTAT 58.835 50.000 0.00 0.00 0.00 2.97
2705 3679 1.203137 ACCAGTACACCACCTAGCTGA 60.203 52.381 0.00 0.00 0.00 4.26
2820 3801 5.860941 GGTTTAGAACCCTACTACCTACC 57.139 47.826 0.00 0.00 46.12 3.18
2822 3805 5.362143 GGTTTAGAACCCTACTACCTACCAG 59.638 48.000 0.00 0.00 46.12 4.00
2851 3837 4.341235 TCTTGTAATCGGATCTCGTGGATT 59.659 41.667 0.00 0.00 40.32 3.01
2864 3851 2.101917 TCGTGGATTTAGATCGAACCCC 59.898 50.000 0.00 2.44 32.84 4.95
2875 3862 1.216178 CGAACCCCGGTCGTAACAT 59.784 57.895 0.00 0.00 33.91 2.71
3212 4203 0.982852 TCCGCCACATCCATCTCCTT 60.983 55.000 0.00 0.00 0.00 3.36
3223 4214 0.877649 CATCTCCTTCGCCACCGATG 60.878 60.000 0.00 0.00 43.97 3.84
3232 4223 2.202987 CCACCGATGAGGCTGCTC 60.203 66.667 0.00 0.00 46.52 4.26
3353 4344 0.033011 AGGCGGGACTACAGATCACT 60.033 55.000 0.00 0.00 0.00 3.41
3368 4359 2.203938 ACTGGGGGATGTCACCGT 60.204 61.111 0.00 0.00 41.47 4.83
3430 4421 1.910580 ATTCCCATCTGCCGTTCGGT 61.911 55.000 12.81 0.00 0.00 4.69
3443 4434 1.599992 GTTCGGTGAGAGTTCGTACG 58.400 55.000 9.53 9.53 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 51 3.498661 GGTAGATGGGGCCTTGGATTTAG 60.499 52.174 0.84 0.00 0.00 1.85
48 52 2.445525 GGTAGATGGGGCCTTGGATTTA 59.554 50.000 0.84 0.00 0.00 1.40
50 54 0.853530 GGTAGATGGGGCCTTGGATT 59.146 55.000 0.84 0.00 0.00 3.01
51 55 0.328450 TGGTAGATGGGGCCTTGGAT 60.328 55.000 0.84 0.00 0.00 3.41
57 61 0.324275 TTTTGCTGGTAGATGGGGCC 60.324 55.000 0.00 0.00 0.00 5.80
58 62 1.780503 ATTTTGCTGGTAGATGGGGC 58.219 50.000 0.00 0.00 0.00 5.80
61 65 6.271488 TCTTTCAATTTTGCTGGTAGATGG 57.729 37.500 0.00 0.00 0.00 3.51
64 74 9.912634 CTTTATTCTTTCAATTTTGCTGGTAGA 57.087 29.630 0.00 0.00 0.00 2.59
68 78 7.662604 AGCTTTATTCTTTCAATTTTGCTGG 57.337 32.000 0.00 0.00 0.00 4.85
103 113 9.203421 TCGGTTGTTGCATATCTACAATTATAG 57.797 33.333 4.34 0.00 41.15 1.31
109 119 4.998033 TGTTCGGTTGTTGCATATCTACAA 59.002 37.500 0.00 0.00 37.91 2.41
114 124 6.060028 ACATATGTTCGGTTGTTGCATATC 57.940 37.500 1.41 0.00 32.41 1.63
126 136 5.917447 CACAGTCAGATCTACATATGTTCGG 59.083 44.000 14.77 6.74 0.00 4.30
128 138 8.140628 ACATCACAGTCAGATCTACATATGTTC 58.859 37.037 14.77 5.78 0.00 3.18
134 144 4.958581 TCCACATCACAGTCAGATCTACAT 59.041 41.667 0.00 0.00 0.00 2.29
135 145 4.344104 TCCACATCACAGTCAGATCTACA 58.656 43.478 0.00 0.00 0.00 2.74
144 154 2.736719 CGACCTCATCCACATCACAGTC 60.737 54.545 0.00 0.00 0.00 3.51
145 155 1.205655 CGACCTCATCCACATCACAGT 59.794 52.381 0.00 0.00 0.00 3.55
146 156 1.931906 CGACCTCATCCACATCACAG 58.068 55.000 0.00 0.00 0.00 3.66
147 157 0.108186 GCGACCTCATCCACATCACA 60.108 55.000 0.00 0.00 0.00 3.58
192 202 2.481969 GCATGACTAGATGAAGCCGACA 60.482 50.000 0.00 0.00 0.00 4.35
194 204 1.269257 CGCATGACTAGATGAAGCCGA 60.269 52.381 0.00 0.00 0.00 5.54
197 207 2.231215 ACCGCATGACTAGATGAAGC 57.769 50.000 0.00 0.00 0.00 3.86
219 229 2.031163 GTTCTCACTGCTGGCGGT 59.969 61.111 0.69 0.69 35.66 5.68
226 236 2.012673 GATGGACCATGTTCTCACTGC 58.987 52.381 12.99 0.00 0.00 4.40
229 239 5.295950 CATCTAGATGGACCATGTTCTCAC 58.704 45.833 22.89 0.00 35.24 3.51
231 241 4.314121 GCATCTAGATGGACCATGTTCTC 58.686 47.826 29.43 8.47 39.16 2.87
240 250 0.398318 GGGTGGGCATCTAGATGGAC 59.602 60.000 29.43 16.22 39.16 4.02
257 267 1.001641 CCTCTGAAGGCAAGGTGGG 60.002 63.158 0.00 0.00 35.37 4.61
271 281 0.693430 TCTGGCCATGCATCTCCTCT 60.693 55.000 5.51 0.00 0.00 3.69
289 299 1.503542 CCATGACCGCAACTTGCTC 59.496 57.895 11.93 4.36 42.25 4.26
291 301 2.126346 GCCATGACCGCAACTTGC 60.126 61.111 3.44 3.44 40.69 4.01
302 312 3.531207 CTCGCCTCTCCGCCATGA 61.531 66.667 0.00 0.00 0.00 3.07
316 326 4.744570 TGTTGTTTATGTCCTCTAGCTCG 58.255 43.478 0.00 0.00 0.00 5.03
324 334 3.076785 TCCCCCATTGTTGTTTATGTCCT 59.923 43.478 0.00 0.00 0.00 3.85
329 339 2.657459 TCCCTCCCCCATTGTTGTTTAT 59.343 45.455 0.00 0.00 0.00 1.40
330 340 2.074579 TCCCTCCCCCATTGTTGTTTA 58.925 47.619 0.00 0.00 0.00 2.01
338 348 1.010795 CCTCTTTTCCCTCCCCCATT 58.989 55.000 0.00 0.00 0.00 3.16
340 350 0.499147 TACCTCTTTTCCCTCCCCCA 59.501 55.000 0.00 0.00 0.00 4.96
341 351 1.775459 GATACCTCTTTTCCCTCCCCC 59.225 57.143 0.00 0.00 0.00 5.40
342 352 1.416772 CGATACCTCTTTTCCCTCCCC 59.583 57.143 0.00 0.00 0.00 4.81
347 357 3.430513 GGTGAGTCGATACCTCTTTTCCC 60.431 52.174 8.65 0.00 34.11 3.97
360 372 0.393944 ATAGCCACGAGGTGAGTCGA 60.394 55.000 0.00 0.00 42.85 4.20
382 394 1.024046 ATGCGTGTGTGTGTGTGTGT 61.024 50.000 0.00 0.00 0.00 3.72
386 398 1.605457 CCTCTATGCGTGTGTGTGTGT 60.605 52.381 0.00 0.00 0.00 3.72
387 399 1.070821 CCTCTATGCGTGTGTGTGTG 58.929 55.000 0.00 0.00 0.00 3.82
388 400 0.966179 TCCTCTATGCGTGTGTGTGT 59.034 50.000 0.00 0.00 0.00 3.72
389 401 1.067565 AGTCCTCTATGCGTGTGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
390 402 1.067565 CAGTCCTCTATGCGTGTGTGT 60.068 52.381 0.00 0.00 0.00 3.72
391 403 1.633561 CAGTCCTCTATGCGTGTGTG 58.366 55.000 0.00 0.00 0.00 3.82
392 404 0.532573 CCAGTCCTCTATGCGTGTGT 59.467 55.000 0.00 0.00 0.00 3.72
393 405 0.179100 CCCAGTCCTCTATGCGTGTG 60.179 60.000 0.00 0.00 0.00 3.82
394 406 0.324368 TCCCAGTCCTCTATGCGTGT 60.324 55.000 0.00 0.00 0.00 4.49
395 407 0.387202 CTCCCAGTCCTCTATGCGTG 59.613 60.000 0.00 0.00 0.00 5.34
396 408 0.757188 CCTCCCAGTCCTCTATGCGT 60.757 60.000 0.00 0.00 0.00 5.24
416 428 4.647615 AGATTCGGCGCGATCCCG 62.648 66.667 12.10 14.67 46.88 5.14
451 463 1.003233 GAGGTTGTCTGCCCTCACC 60.003 63.158 0.00 0.00 45.47 4.02
453 465 3.821067 AACAAGAGGTTGTCTGCCCTCA 61.821 50.000 8.30 0.00 46.68 3.86
465 477 3.771577 ATTCACCGAAGAACAAGAGGT 57.228 42.857 0.00 0.00 35.24 3.85
470 487 4.062293 CACACCTATTCACCGAAGAACAA 58.938 43.478 0.00 0.00 0.00 2.83
485 502 1.550179 CCCCTCACACTCTCACACCTA 60.550 57.143 0.00 0.00 0.00 3.08
491 511 1.279496 CCAATCCCCTCACACTCTCA 58.721 55.000 0.00 0.00 0.00 3.27
497 517 2.237965 CCACCCCAATCCCCTCACA 61.238 63.158 0.00 0.00 0.00 3.58
505 525 2.190578 CCTCGCTCCACCCCAATC 59.809 66.667 0.00 0.00 0.00 2.67
544 565 3.466791 ATCCCTCGCCGGCAAGATG 62.467 63.158 28.98 12.48 0.00 2.90
548 569 3.261039 TTTCATCCCTCGCCGGCAA 62.261 57.895 28.98 7.25 0.00 4.52
587 608 4.496670 CCTCGTCGCTAGGGTTTG 57.503 61.111 6.70 0.00 0.00 2.93
607 629 1.737793 GTTCATCCCCGTTACTGCAAG 59.262 52.381 0.00 0.00 42.29 4.01
608 630 1.349688 AGTTCATCCCCGTTACTGCAA 59.650 47.619 0.00 0.00 0.00 4.08
609 631 0.981183 AGTTCATCCCCGTTACTGCA 59.019 50.000 0.00 0.00 0.00 4.41
610 632 2.973694 TAGTTCATCCCCGTTACTGC 57.026 50.000 0.00 0.00 0.00 4.40
611 633 9.550406 TTTTTATATAGTTCATCCCCGTTACTG 57.450 33.333 0.00 0.00 0.00 2.74
614 636 9.426837 CGATTTTTATATAGTTCATCCCCGTTA 57.573 33.333 0.00 0.00 0.00 3.18
615 637 7.935210 ACGATTTTTATATAGTTCATCCCCGTT 59.065 33.333 0.00 0.00 0.00 4.44
616 638 7.447594 ACGATTTTTATATAGTTCATCCCCGT 58.552 34.615 0.00 0.00 0.00 5.28
617 639 7.900782 ACGATTTTTATATAGTTCATCCCCG 57.099 36.000 0.00 0.00 0.00 5.73
618 640 9.159364 GGTACGATTTTTATATAGTTCATCCCC 57.841 37.037 0.00 0.00 0.00 4.81
619 641 9.715121 TGGTACGATTTTTATATAGTTCATCCC 57.285 33.333 0.00 0.00 0.00 3.85
630 652 9.697990 AGGGGTATTTTTGGTACGATTTTTATA 57.302 29.630 0.00 0.00 0.00 0.98
677 699 8.267183 AGGTGTTTCCTCTCAAAATTTTCAAAT 58.733 29.630 0.00 0.00 44.42 2.32
678 700 7.548780 CAGGTGTTTCCTCTCAAAATTTTCAAA 59.451 33.333 0.00 0.00 46.24 2.69
680 702 6.406849 CCAGGTGTTTCCTCTCAAAATTTTCA 60.407 38.462 0.00 0.00 46.24 2.69
685 707 4.141158 AGACCAGGTGTTTCCTCTCAAAAT 60.141 41.667 0.00 0.00 46.24 1.82
686 708 3.202151 AGACCAGGTGTTTCCTCTCAAAA 59.798 43.478 0.00 0.00 46.24 2.44
696 718 5.675684 AATTTCAAACAGACCAGGTGTTT 57.324 34.783 0.00 0.00 46.65 2.83
724 746 2.298729 TCCGAGGGGCATTTTTGAAAAG 59.701 45.455 0.00 0.00 0.00 2.27
725 747 2.320781 TCCGAGGGGCATTTTTGAAAA 58.679 42.857 0.00 0.00 0.00 2.29
727 749 1.824230 CATCCGAGGGGCATTTTTGAA 59.176 47.619 0.00 0.00 0.00 2.69
730 752 1.824852 GAACATCCGAGGGGCATTTTT 59.175 47.619 0.00 0.00 0.00 1.94
745 767 5.404366 GGCGTCATGTGTATTATACGAACAT 59.596 40.000 3.78 3.44 32.35 2.71
746 768 4.741185 GGCGTCATGTGTATTATACGAACA 59.259 41.667 3.78 0.00 32.35 3.18
747 769 4.741185 TGGCGTCATGTGTATTATACGAAC 59.259 41.667 3.78 0.00 32.35 3.95
748 770 4.934515 TGGCGTCATGTGTATTATACGAA 58.065 39.130 3.78 0.00 32.35 3.85
751 773 9.582431 AATATACTGGCGTCATGTGTATTATAC 57.418 33.333 14.86 0.00 30.22 1.47
759 781 2.871633 TGCAATATACTGGCGTCATGTG 59.128 45.455 0.00 0.00 0.00 3.21
762 784 3.503363 CCAATGCAATATACTGGCGTCAT 59.497 43.478 0.00 0.00 0.00 3.06
764 786 3.138304 TCCAATGCAATATACTGGCGTC 58.862 45.455 0.00 0.00 0.00 5.19
768 790 5.413833 GTCCAGATCCAATGCAATATACTGG 59.586 44.000 17.18 17.18 42.22 4.00
772 794 4.041567 ACCGTCCAGATCCAATGCAATATA 59.958 41.667 0.00 0.00 0.00 0.86
773 795 3.181440 ACCGTCCAGATCCAATGCAATAT 60.181 43.478 0.00 0.00 0.00 1.28
776 798 0.327924 ACCGTCCAGATCCAATGCAA 59.672 50.000 0.00 0.00 0.00 4.08
797 819 1.721487 GGTGCATCCGGTCGAAATG 59.279 57.895 0.00 0.00 0.00 2.32
798 820 4.218722 GGTGCATCCGGTCGAAAT 57.781 55.556 0.00 0.00 0.00 2.17
807 829 2.695359 TGAGTCTTTTACGGTGCATCC 58.305 47.619 0.00 0.00 0.00 3.51
808 830 4.742438 TTTGAGTCTTTTACGGTGCATC 57.258 40.909 0.00 0.00 0.00 3.91
809 831 5.163602 TGTTTTTGAGTCTTTTACGGTGCAT 60.164 36.000 0.00 0.00 0.00 3.96
810 832 4.156190 TGTTTTTGAGTCTTTTACGGTGCA 59.844 37.500 0.00 0.00 0.00 4.57
811 833 4.664188 TGTTTTTGAGTCTTTTACGGTGC 58.336 39.130 0.00 0.00 0.00 5.01
812 834 5.741982 CCTTGTTTTTGAGTCTTTTACGGTG 59.258 40.000 0.00 0.00 0.00 4.94
813 835 5.163591 CCCTTGTTTTTGAGTCTTTTACGGT 60.164 40.000 0.00 0.00 0.00 4.83
814 836 5.278604 CCCTTGTTTTTGAGTCTTTTACGG 58.721 41.667 0.00 0.00 0.00 4.02
815 837 4.738252 GCCCTTGTTTTTGAGTCTTTTACG 59.262 41.667 0.00 0.00 0.00 3.18
816 838 5.656480 TGCCCTTGTTTTTGAGTCTTTTAC 58.344 37.500 0.00 0.00 0.00 2.01
817 839 5.923733 TGCCCTTGTTTTTGAGTCTTTTA 57.076 34.783 0.00 0.00 0.00 1.52
818 840 4.817318 TGCCCTTGTTTTTGAGTCTTTT 57.183 36.364 0.00 0.00 0.00 2.27
819 841 4.466015 TCTTGCCCTTGTTTTTGAGTCTTT 59.534 37.500 0.00 0.00 0.00 2.52
820 842 4.023291 TCTTGCCCTTGTTTTTGAGTCTT 58.977 39.130 0.00 0.00 0.00 3.01
821 843 3.631250 TCTTGCCCTTGTTTTTGAGTCT 58.369 40.909 0.00 0.00 0.00 3.24
822 844 3.796844 GCTCTTGCCCTTGTTTTTGAGTC 60.797 47.826 0.00 0.00 0.00 3.36
823 845 2.101415 GCTCTTGCCCTTGTTTTTGAGT 59.899 45.455 0.00 0.00 0.00 3.41
824 846 2.363359 AGCTCTTGCCCTTGTTTTTGAG 59.637 45.455 0.00 0.00 40.80 3.02
825 847 2.387757 AGCTCTTGCCCTTGTTTTTGA 58.612 42.857 0.00 0.00 40.80 2.69
826 848 2.867975 CAAGCTCTTGCCCTTGTTTTTG 59.132 45.455 0.00 0.00 40.80 2.44
827 849 2.158914 CCAAGCTCTTGCCCTTGTTTTT 60.159 45.455 4.17 0.00 40.80 1.94
851 874 2.342650 CCGCCTTGTCCCAATGGTG 61.343 63.158 0.00 0.00 0.00 4.17
852 875 2.035626 CCGCCTTGTCCCAATGGT 59.964 61.111 0.00 0.00 0.00 3.55
861 884 2.564721 GCAAGCCTTTCCGCCTTGT 61.565 57.895 0.00 0.00 0.00 3.16
935 970 4.740205 TGCTTGTATCGTCGATTCTCATTC 59.260 41.667 13.91 6.48 0.00 2.67
944 979 2.004583 CCCTTTGCTTGTATCGTCGA 57.995 50.000 0.00 0.00 0.00 4.20
1023 1060 0.661020 AGTTTTGGCGCAGTGTGTAC 59.339 50.000 10.83 0.00 0.00 2.90
1024 1061 2.242047 TAGTTTTGGCGCAGTGTGTA 57.758 45.000 10.83 0.00 0.00 2.90
1050 1087 1.571460 CACTTTGACGCTGAGTGCC 59.429 57.895 0.00 0.00 38.78 5.01
1060 1100 1.797025 AGAAGGCTACGCACTTTGAC 58.203 50.000 0.00 0.00 0.00 3.18
1070 1110 2.432874 GAGGAAGGAGGAAGAAGGCTAC 59.567 54.545 0.00 0.00 0.00 3.58
1087 1130 4.742649 ACGCAGGCGAGGAGAGGA 62.743 66.667 21.62 0.00 42.83 3.71
1215 1258 1.075536 GGTTGTTGAAGGGGATGACCT 59.924 52.381 0.00 0.00 44.56 3.85
1314 1372 4.735132 CTCGGCGCCAAAGGACGA 62.735 66.667 28.98 14.79 0.00 4.20
1337 2002 1.135112 TGTCATGTGCTGCTACGGTAG 60.135 52.381 10.83 10.83 0.00 3.18
1386 2137 4.853580 TCGAAAGATCAAGCTGCAGCGA 62.854 50.000 31.78 24.05 40.26 4.93
1559 2488 1.785881 CGAGCGCGTTGTATTTTCTG 58.214 50.000 8.43 0.00 0.00 3.02
1611 2540 0.673985 TTGATCCGGAGCCGATACAG 59.326 55.000 18.75 0.00 42.83 2.74
1703 2632 1.704010 GCCGTAACGCTTACCGAAC 59.296 57.895 0.00 0.00 41.02 3.95
1721 2650 0.753262 ATGCACTCTAACCTAGGGCG 59.247 55.000 14.81 0.49 0.00 6.13
1735 2664 1.470098 GTGGTCATGGAACTGATGCAC 59.530 52.381 0.00 0.00 29.34 4.57
1738 2667 2.002586 GTCGTGGTCATGGAACTGATG 58.997 52.381 0.00 0.00 0.00 3.07
1740 2669 0.038618 CGTCGTGGTCATGGAACTGA 60.039 55.000 0.00 0.00 0.00 3.41
1741 2670 0.038618 TCGTCGTGGTCATGGAACTG 60.039 55.000 0.00 0.00 0.00 3.16
1751 2711 1.315690 TCTTGACTTCTCGTCGTGGT 58.684 50.000 0.00 0.00 45.87 4.16
1755 2715 2.989840 AGCAATTCTTGACTTCTCGTCG 59.010 45.455 0.00 0.00 45.87 5.12
1767 2727 2.996631 AGATCCGAGCAAGCAATTCTT 58.003 42.857 0.00 0.00 34.78 2.52
1772 2732 2.621338 CAGTTAGATCCGAGCAAGCAA 58.379 47.619 0.00 0.00 0.00 3.91
1779 2739 3.364062 CTTACGTGCAGTTAGATCCGAG 58.636 50.000 0.00 0.00 31.55 4.63
1792 2752 0.108804 TCTACTGGCTGCTTACGTGC 60.109 55.000 0.00 0.00 0.00 5.34
1799 2759 2.114616 AGCTACATTCTACTGGCTGCT 58.885 47.619 0.00 0.00 0.00 4.24
1802 2762 2.099921 CGACAGCTACATTCTACTGGCT 59.900 50.000 0.00 0.00 35.95 4.75
1809 2769 4.258702 ACTTTCACGACAGCTACATTCT 57.741 40.909 0.00 0.00 0.00 2.40
1823 2783 4.807834 GGTATAGGAGGCGTTTACTTTCAC 59.192 45.833 0.00 0.00 0.00 3.18
1867 2827 2.750637 GGCTCGGTCCTCGACTCA 60.751 66.667 0.00 0.00 43.74 3.41
1868 2828 3.878519 CGGCTCGGTCCTCGACTC 61.879 72.222 0.00 0.00 43.74 3.36
1889 2852 2.743636 TAAGAATGGGCGGATCGATC 57.256 50.000 17.36 17.36 0.00 3.69
1913 2876 1.141881 CTACTCGGCTGGCACGATT 59.858 57.895 1.08 0.00 39.89 3.34
1920 2883 4.650754 AAGTATACAACTACTCGGCTGG 57.349 45.455 5.50 0.00 37.50 4.85
1971 2945 7.393216 AGCAACTGCCATAAATTAAAAATGGA 58.607 30.769 14.88 3.67 42.36 3.41
1975 2949 8.663911 GCATTAGCAACTGCCATAAATTAAAAA 58.336 29.630 0.00 0.00 43.38 1.94
1977 2951 7.769272 GCATTAGCAACTGCCATAAATTAAA 57.231 32.000 0.00 0.00 43.38 1.52
2009 2983 0.813610 TGAACCCTGCAACGTCAGTG 60.814 55.000 3.83 0.00 32.32 3.66
2011 2985 0.532862 ACTGAACCCTGCAACGTCAG 60.533 55.000 12.41 12.41 0.00 3.51
2142 3116 1.745489 GGATGCCGTCCCAGTTGAC 60.745 63.158 0.00 0.00 41.50 3.18
2282 3256 0.106708 AACCATGCAGGCGTCGATAT 59.893 50.000 0.00 0.00 43.14 1.63
2313 3287 4.134563 GAGAGCTGAACAGTGGGTTAAAA 58.865 43.478 0.00 0.00 40.63 1.52
2314 3288 3.391296 AGAGAGCTGAACAGTGGGTTAAA 59.609 43.478 0.00 0.00 40.63 1.52
2319 3293 1.345741 TGAAGAGAGCTGAACAGTGGG 59.654 52.381 0.00 0.00 0.00 4.61
2324 3298 3.667497 AACGATGAAGAGAGCTGAACA 57.333 42.857 0.00 0.00 0.00 3.18
2373 3347 7.993821 TTGTTCATATTCGCTCAAACAAAAA 57.006 28.000 0.00 0.00 34.66 1.94
2374 3348 8.081633 AGATTGTTCATATTCGCTCAAACAAAA 58.918 29.630 3.00 0.00 39.29 2.44
2384 3358 6.718388 TCATGACAAGATTGTTCATATTCGC 58.282 36.000 0.00 0.00 42.43 4.70
2385 3359 7.375280 GCTTCATGACAAGATTGTTCATATTCG 59.625 37.037 0.00 0.00 42.43 3.34
2433 3407 4.787551 TCATGTGGGCCGTCTTTATTTAT 58.212 39.130 0.00 0.00 0.00 1.40
2462 3436 3.819337 GGGTTCCAGTGAAGAAGGTTAAC 59.181 47.826 0.00 0.00 0.00 2.01
2466 3440 0.771755 GGGGTTCCAGTGAAGAAGGT 59.228 55.000 0.00 0.00 0.00 3.50
2492 3466 5.952347 AGTTTCTCCAGTGAAGAAGGTTTTT 59.048 36.000 0.00 0.00 0.00 1.94
2493 3467 5.358160 CAGTTTCTCCAGTGAAGAAGGTTTT 59.642 40.000 0.00 0.00 0.00 2.43
2494 3468 4.884164 CAGTTTCTCCAGTGAAGAAGGTTT 59.116 41.667 0.00 0.00 0.00 3.27
2495 3469 4.455606 CAGTTTCTCCAGTGAAGAAGGTT 58.544 43.478 0.00 0.00 0.00 3.50
2496 3470 3.181450 CCAGTTTCTCCAGTGAAGAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
2497 3471 3.406764 CCAGTTTCTCCAGTGAAGAAGG 58.593 50.000 0.00 0.00 0.00 3.46
2498 3472 2.810852 GCCAGTTTCTCCAGTGAAGAAG 59.189 50.000 0.00 0.00 0.00 2.85
2499 3473 2.806745 CGCCAGTTTCTCCAGTGAAGAA 60.807 50.000 0.00 0.00 0.00 2.52
2500 3474 1.270305 CGCCAGTTTCTCCAGTGAAGA 60.270 52.381 0.00 0.00 0.00 2.87
2501 3475 1.151668 CGCCAGTTTCTCCAGTGAAG 58.848 55.000 0.00 0.00 0.00 3.02
2502 3476 0.756294 TCGCCAGTTTCTCCAGTGAA 59.244 50.000 0.00 0.00 0.00 3.18
2503 3477 0.976641 ATCGCCAGTTTCTCCAGTGA 59.023 50.000 0.00 0.00 0.00 3.41
2504 3478 1.081892 CATCGCCAGTTTCTCCAGTG 58.918 55.000 0.00 0.00 0.00 3.66
2505 3479 0.036010 CCATCGCCAGTTTCTCCAGT 60.036 55.000 0.00 0.00 0.00 4.00
2506 3480 1.372087 GCCATCGCCAGTTTCTCCAG 61.372 60.000 0.00 0.00 0.00 3.86
2507 3481 1.377202 GCCATCGCCAGTTTCTCCA 60.377 57.895 0.00 0.00 0.00 3.86
2508 3482 0.960364 TTGCCATCGCCAGTTTCTCC 60.960 55.000 0.00 0.00 0.00 3.71
2509 3483 1.098050 ATTGCCATCGCCAGTTTCTC 58.902 50.000 0.00 0.00 0.00 2.87
2510 3484 1.549203 AATTGCCATCGCCAGTTTCT 58.451 45.000 0.00 0.00 0.00 2.52
2511 3485 2.262211 GAAATTGCCATCGCCAGTTTC 58.738 47.619 0.00 0.00 0.00 2.78
2512 3486 1.402720 CGAAATTGCCATCGCCAGTTT 60.403 47.619 0.00 0.00 31.71 2.66
2513 3487 0.171007 CGAAATTGCCATCGCCAGTT 59.829 50.000 0.00 0.00 31.71 3.16
2514 3488 0.960364 ACGAAATTGCCATCGCCAGT 60.960 50.000 0.00 0.00 42.61 4.00
2515 3489 0.171007 AACGAAATTGCCATCGCCAG 59.829 50.000 0.00 0.00 42.61 4.85
2516 3490 0.600557 AAACGAAATTGCCATCGCCA 59.399 45.000 0.00 0.00 42.61 5.69
2517 3491 1.708822 AAAACGAAATTGCCATCGCC 58.291 45.000 0.00 0.00 42.61 5.54
2518 3492 3.753842 TCTAAAACGAAATTGCCATCGC 58.246 40.909 0.00 0.00 42.61 4.58
2519 3493 5.216566 TCTCTAAAACGAAATTGCCATCG 57.783 39.130 0.00 0.00 44.33 3.84
2520 3494 5.030936 GCTCTCTAAAACGAAATTGCCATC 58.969 41.667 0.00 0.00 0.00 3.51
2521 3495 4.458989 TGCTCTCTAAAACGAAATTGCCAT 59.541 37.500 0.00 0.00 0.00 4.40
2522 3496 3.818210 TGCTCTCTAAAACGAAATTGCCA 59.182 39.130 0.00 0.00 0.00 4.92
2523 3497 4.419522 TGCTCTCTAAAACGAAATTGCC 57.580 40.909 0.00 0.00 0.00 4.52
2524 3498 5.452777 AGTTGCTCTCTAAAACGAAATTGC 58.547 37.500 0.00 0.00 0.00 3.56
2525 3499 9.612620 AATTAGTTGCTCTCTAAAACGAAATTG 57.387 29.630 0.00 0.00 32.32 2.32
2529 3503 9.701098 TCTTAATTAGTTGCTCTCTAAAACGAA 57.299 29.630 0.00 0.00 32.32 3.85
2530 3504 9.355215 CTCTTAATTAGTTGCTCTCTAAAACGA 57.645 33.333 0.00 0.00 32.32 3.85
2531 3505 8.596380 CCTCTTAATTAGTTGCTCTCTAAAACG 58.404 37.037 0.00 0.00 32.32 3.60
2532 3506 9.438228 ACCTCTTAATTAGTTGCTCTCTAAAAC 57.562 33.333 0.00 0.00 32.32 2.43
2535 3509 8.693625 GGTACCTCTTAATTAGTTGCTCTCTAA 58.306 37.037 4.06 0.00 32.96 2.10
2536 3510 8.235359 GGTACCTCTTAATTAGTTGCTCTCTA 57.765 38.462 4.06 0.00 0.00 2.43
2537 3511 7.114866 GGTACCTCTTAATTAGTTGCTCTCT 57.885 40.000 4.06 0.00 0.00 3.10
2576 3550 4.657824 ACGACACGACCCTTGCGG 62.658 66.667 0.00 0.00 37.81 5.69
2577 3551 3.403057 CACGACACGACCCTTGCG 61.403 66.667 0.00 0.00 0.00 4.85
2578 3552 1.885850 AACACGACACGACCCTTGC 60.886 57.895 0.00 0.00 0.00 4.01
2579 3553 0.808453 ACAACACGACACGACCCTTG 60.808 55.000 0.00 0.00 0.00 3.61
2580 3554 0.108041 AACAACACGACACGACCCTT 60.108 50.000 0.00 0.00 0.00 3.95
2581 3555 0.746063 TAACAACACGACACGACCCT 59.254 50.000 0.00 0.00 0.00 4.34
2582 3556 1.458064 CATAACAACACGACACGACCC 59.542 52.381 0.00 0.00 0.00 4.46
2583 3557 2.396601 TCATAACAACACGACACGACC 58.603 47.619 0.00 0.00 0.00 4.79
2584 3558 3.060363 GGATCATAACAACACGACACGAC 59.940 47.826 0.00 0.00 0.00 4.34
2585 3559 3.247442 GGATCATAACAACACGACACGA 58.753 45.455 0.00 0.00 0.00 4.35
2586 3560 2.347452 GGGATCATAACAACACGACACG 59.653 50.000 0.00 0.00 0.00 4.49
2587 3561 3.370978 CAGGGATCATAACAACACGACAC 59.629 47.826 0.00 0.00 0.00 3.67
2588 3562 3.007506 ACAGGGATCATAACAACACGACA 59.992 43.478 0.00 0.00 0.00 4.35
2589 3563 3.596214 ACAGGGATCATAACAACACGAC 58.404 45.455 0.00 0.00 0.00 4.34
2590 3564 3.259625 TGACAGGGATCATAACAACACGA 59.740 43.478 0.00 0.00 0.00 4.35
2591 3565 3.595173 TGACAGGGATCATAACAACACG 58.405 45.455 0.00 0.00 0.00 4.49
2592 3566 3.375299 GCTGACAGGGATCATAACAACAC 59.625 47.826 4.26 0.00 0.00 3.32
2593 3567 3.609853 GCTGACAGGGATCATAACAACA 58.390 45.455 4.26 0.00 0.00 3.33
2594 3568 2.609459 CGCTGACAGGGATCATAACAAC 59.391 50.000 14.07 0.00 0.00 3.32
2614 3588 4.101448 CCCTCCTCTTGTGGCCCG 62.101 72.222 0.00 0.00 0.00 6.13
2622 3596 0.402121 GCTTTGTGTCCCCTCCTCTT 59.598 55.000 0.00 0.00 0.00 2.85
2635 3609 0.749649 TGCGTTTCATTGGGCTTTGT 59.250 45.000 0.00 0.00 0.00 2.83
2639 3613 1.665442 GGTTGCGTTTCATTGGGCT 59.335 52.632 0.00 0.00 0.00 5.19
2645 3619 1.169661 TGCCTTCGGTTGCGTTTCAT 61.170 50.000 0.00 0.00 0.00 2.57
2650 3624 2.515057 TTGTGCCTTCGGTTGCGT 60.515 55.556 0.00 0.00 0.00 5.24
2664 3638 2.854522 GCTGGATAGCGGTTGTTGT 58.145 52.632 0.00 0.00 40.67 3.32
2677 3651 2.221299 GGTGTACTGGTGGGCTGGA 61.221 63.158 0.00 0.00 0.00 3.86
2705 3679 3.452627 CCTCTCCACACCTGCTTAAGTAT 59.547 47.826 4.02 0.00 0.00 2.12
2820 3801 6.369059 AGATCCGATTACAAGAATTTGCTG 57.631 37.500 0.00 0.00 37.85 4.41
2822 3805 5.006746 ACGAGATCCGATTACAAGAATTTGC 59.993 40.000 10.05 0.00 41.76 3.68
2851 3837 0.680921 ACGACCGGGGTTCGATCTAA 60.681 55.000 18.64 0.00 42.43 2.10
2864 3851 4.865925 TCTGATTACCAAATGTTACGACCG 59.134 41.667 0.00 0.00 0.00 4.79
2875 3862 5.014202 GGGTAAAAGGCTCTGATTACCAAA 58.986 41.667 22.21 0.00 45.84 3.28
2980 3968 1.979155 GCCTTGGTTTGCTCCTCCC 60.979 63.158 0.00 0.00 0.00 4.30
3125 4113 2.362369 CCCTCGCAGATCACCCACT 61.362 63.158 0.00 0.00 33.89 4.00
3193 4182 0.982852 AAGGAGATGGATGTGGCGGA 60.983 55.000 0.00 0.00 0.00 5.54
3223 4214 2.280052 GGCAGATCGAGCAGCCTC 60.280 66.667 27.48 4.21 43.70 4.70
3232 4223 1.958205 GATCAAGGGCGGCAGATCG 60.958 63.158 12.47 0.00 0.00 3.69
3334 4325 0.033011 AGTGATCTGTAGTCCCGCCT 60.033 55.000 0.00 0.00 0.00 5.52
3338 4329 1.123928 CCCCAGTGATCTGTAGTCCC 58.876 60.000 0.00 0.00 39.82 4.46
3353 4344 2.750337 TACCACGGTGACATCCCCCA 62.750 60.000 10.28 0.00 0.00 4.96
3430 4421 2.693762 CCCCGCGTACGAACTCTCA 61.694 63.158 21.65 0.00 43.93 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.