Multiple sequence alignment - TraesCS3D01G145500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G145500 chr3D 100.000 3342 0 0 1 3342 109272522 109269181 0.000000e+00 6172
1 TraesCS3D01G145500 chr3D 84.568 1134 140 23 1123 2230 108954362 108953238 0.000000e+00 1092
2 TraesCS3D01G145500 chr3D 87.255 102 12 1 253 354 496772125 496772225 7.580000e-22 115
3 TraesCS3D01G145500 chr3B 92.415 2426 110 16 18 2398 160641982 160639586 0.000000e+00 3393
4 TraesCS3D01G145500 chr3B 85.057 1131 135 23 1123 2230 160368048 160366929 0.000000e+00 1122
5 TraesCS3D01G145500 chr3B 94.366 142 8 0 2437 2578 160639450 160639309 5.610000e-53 219
6 TraesCS3D01G145500 chr3A 92.386 1865 87 19 793 2647 121317128 121318947 0.000000e+00 2606
7 TraesCS3D01G145500 chr3A 92.419 1728 74 16 655 2375 121235280 121236957 0.000000e+00 2412
8 TraesCS3D01G145500 chr3A 85.013 1121 139 17 1123 2227 121479486 121480593 0.000000e+00 1112
9 TraesCS3D01G145500 chr3A 91.304 161 13 1 2665 2824 121319010 121319170 5.610000e-53 219
10 TraesCS3D01G145500 chr3A 85.714 112 14 2 243 353 686270467 686270577 2.110000e-22 117
11 TraesCS3D01G145500 chr5D 84.248 1422 162 39 952 2338 27540048 27541442 0.000000e+00 1328
12 TraesCS3D01G145500 chr5D 91.349 289 23 2 2822 3108 520897108 520896820 8.690000e-106 394
13 TraesCS3D01G145500 chr5D 91.319 288 23 2 2822 3108 261281656 261281370 3.130000e-105 392
14 TraesCS3D01G145500 chr5B 83.156 938 116 27 933 1846 20628697 20627778 0.000000e+00 819
15 TraesCS3D01G145500 chr5B 89.235 353 38 0 1842 2194 20627556 20627204 3.060000e-120 442
16 TraesCS3D01G145500 chr5B 85.149 101 14 1 253 353 447144573 447144474 5.900000e-18 102
17 TraesCS3D01G145500 chr5A 83.297 928 98 34 952 1846 18857122 18858025 0.000000e+00 802
18 TraesCS3D01G145500 chr5A 89.518 353 37 0 1842 2194 18858240 18858592 6.580000e-122 448
19 TraesCS3D01G145500 chr5A 83.784 111 17 1 243 353 680622875 680622984 1.640000e-18 104
20 TraesCS3D01G145500 chr4B 77.431 1152 188 49 1102 2198 666254863 666255997 3.660000e-174 621
21 TraesCS3D01G145500 chr4B 77.237 1151 192 46 1102 2198 666301673 666302807 7.930000e-171 610
22 TraesCS3D01G145500 chrUn 83.037 619 85 9 1589 2198 329101082 329100475 8.150000e-151 544
23 TraesCS3D01G145500 chrUn 83.037 619 85 9 1589 2198 380933076 380932469 8.150000e-151 544
24 TraesCS3D01G145500 chrUn 90.278 288 27 1 2822 3108 42685427 42685140 3.150000e-100 375
25 TraesCS3D01G145500 chrUn 90.278 288 27 1 2822 3108 451740516 451740803 3.150000e-100 375
26 TraesCS3D01G145500 chr7A 91.667 288 23 1 2822 3108 383864838 383865125 6.720000e-107 398
27 TraesCS3D01G145500 chr6D 91.126 293 24 2 2817 3108 131624678 131624387 2.420000e-106 396
28 TraesCS3D01G145500 chr6D 89.256 121 13 0 539 659 422201862 422201742 5.780000e-33 152
29 TraesCS3D01G145500 chr2A 91.319 288 24 1 2822 3108 522245390 522245103 3.130000e-105 392
30 TraesCS3D01G145500 chr4D 90.625 288 26 1 2822 3108 342524487 342524200 6.770000e-102 381
31 TraesCS3D01G145500 chr2D 90.625 288 26 1 2822 3108 489023359 489023646 6.770000e-102 381
32 TraesCS3D01G145500 chr2D 86.139 101 13 1 253 353 469271943 469272042 1.270000e-19 108
33 TraesCS3D01G145500 chr1D 87.288 118 13 2 539 655 7401818 7401934 2.090000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G145500 chr3D 109269181 109272522 3341 True 6172.0 6172 100.0000 1 3342 1 chr3D.!!$R2 3341
1 TraesCS3D01G145500 chr3D 108953238 108954362 1124 True 1092.0 1092 84.5680 1123 2230 1 chr3D.!!$R1 1107
2 TraesCS3D01G145500 chr3B 160639309 160641982 2673 True 1806.0 3393 93.3905 18 2578 2 chr3B.!!$R2 2560
3 TraesCS3D01G145500 chr3B 160366929 160368048 1119 True 1122.0 1122 85.0570 1123 2230 1 chr3B.!!$R1 1107
4 TraesCS3D01G145500 chr3A 121235280 121236957 1677 False 2412.0 2412 92.4190 655 2375 1 chr3A.!!$F1 1720
5 TraesCS3D01G145500 chr3A 121317128 121319170 2042 False 1412.5 2606 91.8450 793 2824 2 chr3A.!!$F4 2031
6 TraesCS3D01G145500 chr3A 121479486 121480593 1107 False 1112.0 1112 85.0130 1123 2227 1 chr3A.!!$F2 1104
7 TraesCS3D01G145500 chr5D 27540048 27541442 1394 False 1328.0 1328 84.2480 952 2338 1 chr5D.!!$F1 1386
8 TraesCS3D01G145500 chr5B 20627204 20628697 1493 True 630.5 819 86.1955 933 2194 2 chr5B.!!$R2 1261
9 TraesCS3D01G145500 chr5A 18857122 18858592 1470 False 625.0 802 86.4075 952 2194 2 chr5A.!!$F2 1242
10 TraesCS3D01G145500 chr4B 666254863 666255997 1134 False 621.0 621 77.4310 1102 2198 1 chr4B.!!$F1 1096
11 TraesCS3D01G145500 chr4B 666301673 666302807 1134 False 610.0 610 77.2370 1102 2198 1 chr4B.!!$F2 1096
12 TraesCS3D01G145500 chrUn 329100475 329101082 607 True 544.0 544 83.0370 1589 2198 1 chrUn.!!$R2 609
13 TraesCS3D01G145500 chrUn 380932469 380933076 607 True 544.0 544 83.0370 1589 2198 1 chrUn.!!$R3 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 350 0.040958 CGACCAGCAACAGTTCTTGC 60.041 55.0 0.0 0.0 45.93 4.01 F
2197 2771 0.035152 CCTACAGCTTGACCCATGCA 60.035 55.0 0.0 0.0 37.06 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2867 0.248336 TCCGTACGATCGATGCACAC 60.248 55.0 24.34 8.17 0.00 3.82 R
3303 4067 0.035739 GGAAGCCCAACCGTCAGTTA 59.964 55.0 0.00 0.00 36.18 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.105930 CTACTGCTGCTCGCTCCC 59.894 66.667 0.00 0.00 40.11 4.30
102 103 4.717313 CAGGGCTGCTGCTGCTCA 62.717 66.667 29.15 0.00 40.48 4.26
103 104 3.962694 AGGGCTGCTGCTGCTCAA 61.963 61.111 29.15 0.00 40.48 3.02
105 106 3.745803 GGCTGCTGCTGCTCAACC 61.746 66.667 26.79 9.69 40.48 3.77
106 107 4.099170 GCTGCTGCTGCTCAACCG 62.099 66.667 22.10 0.16 40.48 4.44
107 108 3.429141 CTGCTGCTGCTCAACCGG 61.429 66.667 17.00 0.00 40.48 5.28
108 109 4.254709 TGCTGCTGCTCAACCGGT 62.255 61.111 17.00 0.00 40.48 5.28
136 140 4.624364 TGGTGGTGGTGCTGCTCG 62.624 66.667 0.00 0.00 0.00 5.03
183 188 1.016627 CCATGGTGCGGATGTTACTG 58.983 55.000 2.57 0.00 0.00 2.74
184 189 1.678728 CCATGGTGCGGATGTTACTGT 60.679 52.381 2.57 0.00 0.00 3.55
195 200 3.557054 GGATGTTACTGTTGCTGGTCTCA 60.557 47.826 0.00 0.00 0.00 3.27
258 263 1.512230 CAATGTTGATGGTGGCGGG 59.488 57.895 0.00 0.00 0.00 6.13
278 283 1.377202 GAAGCCAATGAGGACGCCA 60.377 57.895 0.00 0.00 41.22 5.69
314 319 1.377856 GAGGGTGAAGGCCTTGAGC 60.378 63.158 26.25 24.96 42.60 4.26
331 336 4.293648 CAGGCACCACGACGACCA 62.294 66.667 0.00 0.00 0.00 4.02
336 341 2.279918 ACCACGACGACCAGCAAC 60.280 61.111 0.00 0.00 0.00 4.17
345 350 0.040958 CGACCAGCAACAGTTCTTGC 60.041 55.000 0.00 0.00 45.93 4.01
446 451 2.184020 CTCCTGGGCATCACCGAACA 62.184 60.000 0.00 0.00 40.62 3.18
448 453 2.358125 TGGGCATCACCGAACACG 60.358 61.111 0.00 0.00 40.62 4.49
524 529 2.571206 GCAAGTGTTCGACGAAATTCC 58.429 47.619 12.67 0.11 0.00 3.01
566 571 4.514401 ACTTTGCTAACTTTAGGGGATCG 58.486 43.478 0.00 0.00 0.00 3.69
596 601 3.484721 GCCGCGAAATTTTAGTGGAGTAC 60.485 47.826 21.48 4.35 37.73 2.73
600 605 6.202188 CCGCGAAATTTTAGTGGAGTACATAT 59.798 38.462 8.23 0.00 37.73 1.78
601 606 7.383029 CCGCGAAATTTTAGTGGAGTACATATA 59.617 37.037 8.23 0.00 37.73 0.86
602 607 8.212495 CGCGAAATTTTAGTGGAGTACATATAC 58.788 37.037 0.00 0.00 0.00 1.47
603 608 9.257651 GCGAAATTTTAGTGGAGTACATATACT 57.742 33.333 0.00 0.00 44.74 2.12
607 612 8.813643 ATTTTAGTGGAGTACATATACTTCGC 57.186 34.615 0.00 0.00 44.79 4.70
612 617 6.380190 GTGGAGTACATATACTTCGCTAAGG 58.620 44.000 2.75 0.00 42.21 2.69
613 618 6.016443 GTGGAGTACATATACTTCGCTAAGGT 60.016 42.308 2.75 0.00 42.21 3.50
614 619 7.173907 GTGGAGTACATATACTTCGCTAAGGTA 59.826 40.741 2.75 0.00 42.21 3.08
615 620 7.886970 TGGAGTACATATACTTCGCTAAGGTAT 59.113 37.037 2.75 0.17 41.98 2.73
616 621 9.388506 GGAGTACATATACTTCGCTAAGGTATA 57.611 37.037 2.75 2.32 41.98 1.47
628 633 4.395542 CGCTAAGGTATAGACTCCGCTAAT 59.604 45.833 0.00 0.00 0.00 1.73
635 640 7.153315 AGGTATAGACTCCGCTAATTTTTAGC 58.847 38.462 8.81 8.81 37.21 3.09
636 641 6.927381 GGTATAGACTCCGCTAATTTTTAGCA 59.073 38.462 16.87 0.91 40.39 3.49
640 645 5.755861 AGACTCCGCTAATTTTTAGCAGATC 59.244 40.000 16.87 10.99 40.39 2.75
789 795 6.122964 CCTTTCCCATCTTTCTTTACCCTAG 58.877 44.000 0.00 0.00 0.00 3.02
822 828 1.755393 ATCGAACCATCCTACCGGGC 61.755 60.000 6.32 0.00 34.39 6.13
921 934 2.555227 CCACAACTAATGACCCAGCCTT 60.555 50.000 0.00 0.00 0.00 4.35
991 1006 0.464373 ACATTAGCTCCGGTGCATGG 60.464 55.000 28.68 17.14 34.99 3.66
1406 1436 1.374252 CAACTCCGTCTTCACCCCG 60.374 63.158 0.00 0.00 0.00 5.73
1436 1469 2.439701 CCGCTCCCCTACGACTCA 60.440 66.667 0.00 0.00 0.00 3.41
1543 1605 7.992141 AGCAAACTCCAGCTCAGGTAACTTC 62.992 48.000 0.00 0.00 40.31 3.01
2052 2620 1.890894 GGCTACTGCGAGGAGTTCA 59.109 57.895 1.98 0.00 40.82 3.18
2180 2754 1.686110 CACCTCGCCCTTCTACCCT 60.686 63.158 0.00 0.00 0.00 4.34
2197 2771 0.035152 CCTACAGCTTGACCCATGCA 60.035 55.000 0.00 0.00 37.06 3.96
2198 2772 1.409241 CCTACAGCTTGACCCATGCAT 60.409 52.381 0.00 0.00 37.06 3.96
2199 2773 1.674441 CTACAGCTTGACCCATGCATG 59.326 52.381 20.19 20.19 37.06 4.06
2398 3017 6.281405 AGTTGAGAAATCAGTGTACTCGTTT 58.719 36.000 0.00 0.00 0.00 3.60
2399 3018 6.761714 AGTTGAGAAATCAGTGTACTCGTTTT 59.238 34.615 0.00 0.00 0.00 2.43
2579 3297 3.442100 GTCATAGCGGTACCAACACTAC 58.558 50.000 13.54 0.00 0.00 2.73
2586 3304 3.025978 CGGTACCAACACTACTGGGATA 58.974 50.000 13.54 0.00 38.36 2.59
2619 3337 2.735823 GATTTCATTTCATCGGCAGCC 58.264 47.619 0.00 0.00 0.00 4.85
2647 3365 6.197276 CAGAGTGATCTATTTGCCGAATTTG 58.803 40.000 0.00 0.00 0.00 2.32
2650 3368 7.933577 AGAGTGATCTATTTGCCGAATTTGATA 59.066 33.333 0.00 0.00 0.00 2.15
2651 3369 7.865707 AGTGATCTATTTGCCGAATTTGATAC 58.134 34.615 0.00 0.00 0.00 2.24
2655 3373 9.515020 GATCTATTTGCCGAATTTGATACAAAA 57.485 29.630 10.57 0.00 31.52 2.44
2656 3374 9.868277 ATCTATTTGCCGAATTTGATACAAAAA 57.132 25.926 10.57 3.76 31.52 1.94
2706 3469 0.247736 GGAACTCGGCAGTGTCTCAT 59.752 55.000 0.00 0.00 31.06 2.90
2708 3471 2.094182 GGAACTCGGCAGTGTCTCATAA 60.094 50.000 0.00 0.00 31.06 1.90
2731 3494 9.992442 ATAATCCTCGAGTTCCTCCTAATATAA 57.008 33.333 12.31 0.00 0.00 0.98
2740 3503 9.901172 GAGTTCCTCCTAATATAAACTTGGAAA 57.099 33.333 0.00 0.00 33.62 3.13
2783 3547 7.899973 AGAAAACCAAAATACTCTGCAATGAT 58.100 30.769 0.00 0.00 0.00 2.45
2787 3551 6.624423 ACCAAAATACTCTGCAATGATTGAC 58.376 36.000 9.76 1.08 0.00 3.18
2828 3592 3.984292 CGTAGCGACGTTACTTCCT 57.016 52.632 17.91 0.00 44.31 3.36
2829 3593 1.807738 CGTAGCGACGTTACTTCCTC 58.192 55.000 17.91 0.00 44.31 3.71
2830 3594 1.530646 CGTAGCGACGTTACTTCCTCC 60.531 57.143 17.91 0.00 44.31 4.30
2831 3595 1.470098 GTAGCGACGTTACTTCCTCCA 59.530 52.381 13.81 0.00 0.00 3.86
2832 3596 1.183549 AGCGACGTTACTTCCTCCAT 58.816 50.000 0.00 0.00 0.00 3.41
2833 3597 1.549170 AGCGACGTTACTTCCTCCATT 59.451 47.619 0.00 0.00 0.00 3.16
2834 3598 1.925185 GCGACGTTACTTCCTCCATTC 59.075 52.381 0.00 0.00 0.00 2.67
2835 3599 2.537401 CGACGTTACTTCCTCCATTCC 58.463 52.381 0.00 0.00 0.00 3.01
2836 3600 2.737679 CGACGTTACTTCCTCCATTCCC 60.738 54.545 0.00 0.00 0.00 3.97
2837 3601 2.500504 GACGTTACTTCCTCCATTCCCT 59.499 50.000 0.00 0.00 0.00 4.20
2838 3602 2.910977 ACGTTACTTCCTCCATTCCCTT 59.089 45.455 0.00 0.00 0.00 3.95
2839 3603 4.098894 ACGTTACTTCCTCCATTCCCTTA 58.901 43.478 0.00 0.00 0.00 2.69
2840 3604 4.720273 ACGTTACTTCCTCCATTCCCTTAT 59.280 41.667 0.00 0.00 0.00 1.73
2841 3605 5.901276 ACGTTACTTCCTCCATTCCCTTATA 59.099 40.000 0.00 0.00 0.00 0.98
2842 3606 6.183360 ACGTTACTTCCTCCATTCCCTTATAC 60.183 42.308 0.00 0.00 0.00 1.47
2843 3607 6.183360 CGTTACTTCCTCCATTCCCTTATACA 60.183 42.308 0.00 0.00 0.00 2.29
2844 3608 7.571025 GTTACTTCCTCCATTCCCTTATACAA 58.429 38.462 0.00 0.00 0.00 2.41
2845 3609 6.253946 ACTTCCTCCATTCCCTTATACAAG 57.746 41.667 0.00 0.00 0.00 3.16
2882 3646 6.824305 ATACATTTTGCATCTATACAGGGC 57.176 37.500 0.00 0.00 0.00 5.19
2883 3647 3.891366 ACATTTTGCATCTATACAGGGCC 59.109 43.478 0.00 0.00 0.00 5.80
2884 3648 3.660970 TTTTGCATCTATACAGGGCCA 57.339 42.857 6.18 0.00 0.00 5.36
2885 3649 2.638480 TTGCATCTATACAGGGCCAC 57.362 50.000 6.18 0.00 0.00 5.01
2886 3650 1.806496 TGCATCTATACAGGGCCACT 58.194 50.000 6.18 0.00 0.00 4.00
2887 3651 2.126882 TGCATCTATACAGGGCCACTT 58.873 47.619 6.18 0.00 0.00 3.16
2888 3652 3.313791 TGCATCTATACAGGGCCACTTA 58.686 45.455 6.18 0.00 0.00 2.24
2889 3653 3.071023 TGCATCTATACAGGGCCACTTAC 59.929 47.826 6.18 0.00 0.00 2.34
2890 3654 3.071023 GCATCTATACAGGGCCACTTACA 59.929 47.826 6.18 0.00 0.00 2.41
2891 3655 4.800914 GCATCTATACAGGGCCACTTACAG 60.801 50.000 6.18 0.00 0.00 2.74
2892 3656 3.990369 TCTATACAGGGCCACTTACAGT 58.010 45.455 6.18 0.00 0.00 3.55
2893 3657 5.133383 TCTATACAGGGCCACTTACAGTA 57.867 43.478 6.18 0.00 0.00 2.74
2894 3658 5.521696 TCTATACAGGGCCACTTACAGTAA 58.478 41.667 6.18 0.00 0.00 2.24
2895 3659 6.141083 TCTATACAGGGCCACTTACAGTAAT 58.859 40.000 6.18 0.00 0.00 1.89
2896 3660 3.629142 ACAGGGCCACTTACAGTAATC 57.371 47.619 6.18 0.00 0.00 1.75
2897 3661 2.093658 ACAGGGCCACTTACAGTAATCG 60.094 50.000 6.18 0.00 0.00 3.34
2898 3662 2.167693 CAGGGCCACTTACAGTAATCGA 59.832 50.000 6.18 0.00 0.00 3.59
2899 3663 2.431057 AGGGCCACTTACAGTAATCGAG 59.569 50.000 6.18 0.00 0.00 4.04
2900 3664 2.483188 GGGCCACTTACAGTAATCGAGG 60.483 54.545 4.39 0.00 0.00 4.63
2901 3665 2.429610 GGCCACTTACAGTAATCGAGGA 59.570 50.000 0.00 0.00 0.00 3.71
2902 3666 3.118884 GGCCACTTACAGTAATCGAGGAA 60.119 47.826 0.00 0.00 0.00 3.36
2903 3667 4.501071 GCCACTTACAGTAATCGAGGAAA 58.499 43.478 0.00 0.00 0.00 3.13
2904 3668 4.933400 GCCACTTACAGTAATCGAGGAAAA 59.067 41.667 0.00 0.00 0.00 2.29
2905 3669 5.410439 GCCACTTACAGTAATCGAGGAAAAA 59.590 40.000 0.00 0.00 0.00 1.94
2906 3670 6.093633 GCCACTTACAGTAATCGAGGAAAAAT 59.906 38.462 0.00 0.00 0.00 1.82
2907 3671 7.361799 GCCACTTACAGTAATCGAGGAAAAATT 60.362 37.037 0.00 0.00 0.00 1.82
2908 3672 8.512138 CCACTTACAGTAATCGAGGAAAAATTT 58.488 33.333 0.00 0.00 0.00 1.82
2951 3715 9.490663 CTAGTAACTTGTTTAATACTTGCATGC 57.509 33.333 11.82 11.82 31.46 4.06
2952 3716 7.881142 AGTAACTTGTTTAATACTTGCATGCA 58.119 30.769 18.46 18.46 0.00 3.96
2953 3717 8.522830 AGTAACTTGTTTAATACTTGCATGCAT 58.477 29.630 23.37 10.46 0.00 3.96
2954 3718 7.585286 AACTTGTTTAATACTTGCATGCATG 57.415 32.000 26.93 26.93 0.00 4.06
2955 3719 6.690530 ACTTGTTTAATACTTGCATGCATGT 58.309 32.000 33.40 33.40 37.87 3.21
2956 3720 7.825681 ACTTGTTTAATACTTGCATGCATGTA 58.174 30.769 34.92 34.92 39.65 2.29
2957 3721 7.970061 ACTTGTTTAATACTTGCATGCATGTAG 59.030 33.333 35.26 27.26 39.04 2.74
2958 3722 7.389803 TGTTTAATACTTGCATGCATGTAGT 57.610 32.000 35.26 34.72 39.04 2.73
2959 3723 7.471721 TGTTTAATACTTGCATGCATGTAGTC 58.528 34.615 35.19 25.74 39.04 2.59
2960 3724 7.120432 TGTTTAATACTTGCATGCATGTAGTCA 59.880 33.333 35.19 27.32 39.04 3.41
2961 3725 7.806409 TTAATACTTGCATGCATGTAGTCAT 57.194 32.000 35.19 26.22 39.04 3.06
2962 3726 8.900983 TTAATACTTGCATGCATGTAGTCATA 57.099 30.769 35.19 25.50 39.04 2.15
2963 3727 7.806409 AATACTTGCATGCATGTAGTCATAA 57.194 32.000 35.26 22.09 39.04 1.90
2964 3728 7.991084 ATACTTGCATGCATGTAGTCATAAT 57.009 32.000 35.26 23.00 39.04 1.28
2965 3729 6.068473 ACTTGCATGCATGTAGTCATAATG 57.932 37.500 31.27 7.37 33.44 1.90
2966 3730 5.009310 ACTTGCATGCATGTAGTCATAATGG 59.991 40.000 31.27 3.19 33.44 3.16
2967 3731 3.253921 TGCATGCATGTAGTCATAATGGC 59.746 43.478 26.79 9.03 32.54 4.40
2968 3732 3.253921 GCATGCATGTAGTCATAATGGCA 59.746 43.478 26.79 0.00 35.07 4.92
2969 3733 4.082408 GCATGCATGTAGTCATAATGGCAT 60.082 41.667 26.79 0.00 39.13 4.40
2970 3734 5.566032 GCATGCATGTAGTCATAATGGCATT 60.566 40.000 26.79 18.01 37.65 3.56
2971 3735 5.441709 TGCATGTAGTCATAATGGCATTG 57.558 39.130 22.57 7.92 32.47 2.82
2972 3736 4.888823 TGCATGTAGTCATAATGGCATTGT 59.111 37.500 22.57 13.51 32.47 2.71
2973 3737 5.217393 GCATGTAGTCATAATGGCATTGTG 58.783 41.667 25.59 25.59 32.47 3.33
2974 3738 4.898829 TGTAGTCATAATGGCATTGTGC 57.101 40.909 26.40 21.32 44.08 4.57
2975 3739 4.525996 TGTAGTCATAATGGCATTGTGCT 58.474 39.130 26.40 25.47 44.28 4.40
2976 3740 5.679601 TGTAGTCATAATGGCATTGTGCTA 58.320 37.500 26.40 24.68 44.28 3.49
2977 3741 5.527214 TGTAGTCATAATGGCATTGTGCTAC 59.473 40.000 33.26 33.26 44.28 3.58
2978 3742 4.785301 AGTCATAATGGCATTGTGCTACT 58.215 39.130 26.40 22.41 44.28 2.57
2979 3743 5.195940 AGTCATAATGGCATTGTGCTACTT 58.804 37.500 26.40 11.34 44.28 2.24
2980 3744 5.297776 AGTCATAATGGCATTGTGCTACTTC 59.702 40.000 26.40 14.20 44.28 3.01
2981 3745 5.297776 GTCATAATGGCATTGTGCTACTTCT 59.702 40.000 26.40 0.00 44.28 2.85
2982 3746 5.887598 TCATAATGGCATTGTGCTACTTCTT 59.112 36.000 26.40 0.00 44.28 2.52
2983 3747 6.377996 TCATAATGGCATTGTGCTACTTCTTT 59.622 34.615 26.40 0.00 44.28 2.52
2984 3748 4.708726 ATGGCATTGTGCTACTTCTTTC 57.291 40.909 0.00 0.00 44.28 2.62
2985 3749 3.754965 TGGCATTGTGCTACTTCTTTCT 58.245 40.909 1.64 0.00 44.28 2.52
2986 3750 3.753272 TGGCATTGTGCTACTTCTTTCTC 59.247 43.478 1.64 0.00 44.28 2.87
2987 3751 3.753272 GGCATTGTGCTACTTCTTTCTCA 59.247 43.478 1.64 0.00 44.28 3.27
2988 3752 4.397417 GGCATTGTGCTACTTCTTTCTCAT 59.603 41.667 1.64 0.00 44.28 2.90
2989 3753 5.105997 GGCATTGTGCTACTTCTTTCTCATT 60.106 40.000 1.64 0.00 44.28 2.57
2990 3754 6.385033 GCATTGTGCTACTTCTTTCTCATTT 58.615 36.000 0.00 0.00 40.96 2.32
2991 3755 6.525976 GCATTGTGCTACTTCTTTCTCATTTC 59.474 38.462 0.00 0.00 40.96 2.17
2992 3756 7.574592 GCATTGTGCTACTTCTTTCTCATTTCT 60.575 37.037 0.00 0.00 40.96 2.52
2993 3757 7.807977 TTGTGCTACTTCTTTCTCATTTCTT 57.192 32.000 0.00 0.00 0.00 2.52
2994 3758 7.426929 TGTGCTACTTCTTTCTCATTTCTTC 57.573 36.000 0.00 0.00 0.00 2.87
2995 3759 6.428159 TGTGCTACTTCTTTCTCATTTCTTCC 59.572 38.462 0.00 0.00 0.00 3.46
2996 3760 6.652900 GTGCTACTTCTTTCTCATTTCTTCCT 59.347 38.462 0.00 0.00 0.00 3.36
2997 3761 7.174080 GTGCTACTTCTTTCTCATTTCTTCCTT 59.826 37.037 0.00 0.00 0.00 3.36
2998 3762 7.173907 TGCTACTTCTTTCTCATTTCTTCCTTG 59.826 37.037 0.00 0.00 0.00 3.61
2999 3763 6.324561 ACTTCTTTCTCATTTCTTCCTTGC 57.675 37.500 0.00 0.00 0.00 4.01
3000 3764 5.829924 ACTTCTTTCTCATTTCTTCCTTGCA 59.170 36.000 0.00 0.00 0.00 4.08
3001 3765 6.492772 ACTTCTTTCTCATTTCTTCCTTGCAT 59.507 34.615 0.00 0.00 0.00 3.96
3002 3766 6.263516 TCTTTCTCATTTCTTCCTTGCATG 57.736 37.500 0.00 0.00 0.00 4.06
3003 3767 4.445452 TTCTCATTTCTTCCTTGCATGC 57.555 40.909 11.82 11.82 0.00 4.06
3004 3768 3.423749 TCTCATTTCTTCCTTGCATGCA 58.576 40.909 18.46 18.46 0.00 3.96
3005 3769 4.021229 TCTCATTTCTTCCTTGCATGCAT 58.979 39.130 23.37 0.00 0.00 3.96
3006 3770 4.112634 CTCATTTCTTCCTTGCATGCATG 58.887 43.478 23.37 23.21 0.00 4.06
3024 3788 6.573664 TGCATGCAGGTGTATTAATAATCC 57.426 37.500 18.46 3.28 0.00 3.01
3025 3789 5.476599 TGCATGCAGGTGTATTAATAATCCC 59.523 40.000 18.46 6.10 0.00 3.85
3026 3790 5.391950 GCATGCAGGTGTATTAATAATCCCG 60.392 44.000 14.21 5.37 0.00 5.14
3027 3791 4.647611 TGCAGGTGTATTAATAATCCCGG 58.352 43.478 0.00 0.00 0.00 5.73
3028 3792 4.103469 TGCAGGTGTATTAATAATCCCGGT 59.897 41.667 0.00 0.00 0.00 5.28
3029 3793 5.067954 GCAGGTGTATTAATAATCCCGGTT 58.932 41.667 0.00 0.00 0.00 4.44
3030 3794 6.183361 TGCAGGTGTATTAATAATCCCGGTTA 60.183 38.462 0.00 0.00 0.00 2.85
3031 3795 6.711645 GCAGGTGTATTAATAATCCCGGTTAA 59.288 38.462 0.00 0.00 0.00 2.01
3032 3796 7.308169 GCAGGTGTATTAATAATCCCGGTTAAC 60.308 40.741 0.00 0.00 0.00 2.01
3033 3797 7.716123 CAGGTGTATTAATAATCCCGGTTAACA 59.284 37.037 8.10 0.00 0.00 2.41
3034 3798 8.273605 AGGTGTATTAATAATCCCGGTTAACAA 58.726 33.333 8.10 0.00 0.00 2.83
3035 3799 8.901793 GGTGTATTAATAATCCCGGTTAACAAA 58.098 33.333 8.10 0.00 0.00 2.83
3043 3807 9.483916 AATAATCCCGGTTAACAAAAAGAAAAG 57.516 29.630 8.10 0.00 0.00 2.27
3044 3808 5.918426 TCCCGGTTAACAAAAAGAAAAGT 57.082 34.783 8.10 0.00 0.00 2.66
3045 3809 6.283544 TCCCGGTTAACAAAAAGAAAAGTT 57.716 33.333 8.10 0.00 0.00 2.66
3046 3810 6.100668 TCCCGGTTAACAAAAAGAAAAGTTG 58.899 36.000 8.10 0.00 0.00 3.16
3047 3811 5.292345 CCCGGTTAACAAAAAGAAAAGTTGG 59.708 40.000 8.10 0.00 0.00 3.77
3048 3812 5.220510 CCGGTTAACAAAAAGAAAAGTTGGC 60.221 40.000 8.10 0.00 0.00 4.52
3049 3813 5.579119 CGGTTAACAAAAAGAAAAGTTGGCT 59.421 36.000 8.10 0.00 0.00 4.75
3050 3814 6.091577 CGGTTAACAAAAAGAAAAGTTGGCTT 59.908 34.615 8.10 0.00 36.30 4.35
3051 3815 7.461107 GGTTAACAAAAAGAAAAGTTGGCTTC 58.539 34.615 8.10 0.00 33.01 3.86
3052 3816 7.413657 GGTTAACAAAAAGAAAAGTTGGCTTCC 60.414 37.037 8.10 0.00 33.01 3.46
3053 3817 5.159273 ACAAAAAGAAAAGTTGGCTTCCA 57.841 34.783 0.00 0.00 33.01 3.53
3054 3818 5.555966 ACAAAAAGAAAAGTTGGCTTCCAA 58.444 33.333 0.00 0.00 41.69 3.53
3055 3819 6.000840 ACAAAAAGAAAAGTTGGCTTCCAAA 58.999 32.000 0.00 0.00 45.73 3.28
3056 3820 6.149308 ACAAAAAGAAAAGTTGGCTTCCAAAG 59.851 34.615 0.00 0.00 45.73 2.77
3099 3863 9.268268 TCTTAGTACCTGTAATTTGAGTTTGTG 57.732 33.333 0.00 0.00 0.00 3.33
3100 3864 6.877611 AGTACCTGTAATTTGAGTTTGTGG 57.122 37.500 0.00 0.00 0.00 4.17
3101 3865 4.584327 ACCTGTAATTTGAGTTTGTGGC 57.416 40.909 0.00 0.00 0.00 5.01
3102 3866 3.320826 ACCTGTAATTTGAGTTTGTGGCC 59.679 43.478 0.00 0.00 0.00 5.36
3103 3867 3.573967 CCTGTAATTTGAGTTTGTGGCCT 59.426 43.478 3.32 0.00 0.00 5.19
3104 3868 4.039124 CCTGTAATTTGAGTTTGTGGCCTT 59.961 41.667 3.32 0.00 0.00 4.35
3105 3869 4.942852 TGTAATTTGAGTTTGTGGCCTTG 58.057 39.130 3.32 0.00 0.00 3.61
3106 3870 4.404073 TGTAATTTGAGTTTGTGGCCTTGT 59.596 37.500 3.32 0.00 0.00 3.16
3107 3871 5.594725 TGTAATTTGAGTTTGTGGCCTTGTA 59.405 36.000 3.32 0.00 0.00 2.41
3108 3872 4.584327 ATTTGAGTTTGTGGCCTTGTAC 57.416 40.909 3.32 0.00 0.00 2.90
3109 3873 2.719531 TGAGTTTGTGGCCTTGTACA 57.280 45.000 3.32 0.00 0.00 2.90
3110 3874 3.222173 TGAGTTTGTGGCCTTGTACAT 57.778 42.857 3.32 0.00 0.00 2.29
3111 3875 2.884012 TGAGTTTGTGGCCTTGTACATG 59.116 45.455 3.32 0.00 0.00 3.21
3112 3876 2.884639 GAGTTTGTGGCCTTGTACATGT 59.115 45.455 3.32 2.69 0.00 3.21
3113 3877 3.295973 AGTTTGTGGCCTTGTACATGTT 58.704 40.909 2.30 0.00 0.00 2.71
3114 3878 3.704061 AGTTTGTGGCCTTGTACATGTTT 59.296 39.130 2.30 0.00 0.00 2.83
3115 3879 3.724508 TTGTGGCCTTGTACATGTTTG 57.275 42.857 2.30 0.00 0.00 2.93
3116 3880 1.339610 TGTGGCCTTGTACATGTTTGC 59.660 47.619 2.30 0.00 0.00 3.68
3117 3881 1.613437 GTGGCCTTGTACATGTTTGCT 59.387 47.619 2.30 0.00 0.00 3.91
3118 3882 1.612950 TGGCCTTGTACATGTTTGCTG 59.387 47.619 2.30 0.00 0.00 4.41
3119 3883 1.885887 GGCCTTGTACATGTTTGCTGA 59.114 47.619 2.30 0.00 0.00 4.26
3120 3884 2.295909 GGCCTTGTACATGTTTGCTGAA 59.704 45.455 2.30 0.00 0.00 3.02
3121 3885 3.308530 GCCTTGTACATGTTTGCTGAAC 58.691 45.455 2.30 0.00 38.78 3.18
3122 3886 3.857010 GCCTTGTACATGTTTGCTGAACC 60.857 47.826 2.30 0.00 37.45 3.62
3123 3887 3.569701 CCTTGTACATGTTTGCTGAACCT 59.430 43.478 2.30 0.00 37.45 3.50
3124 3888 4.320494 CCTTGTACATGTTTGCTGAACCTC 60.320 45.833 2.30 0.00 37.45 3.85
3125 3889 2.805671 TGTACATGTTTGCTGAACCTCG 59.194 45.455 2.30 0.00 37.45 4.63
3126 3890 1.238439 ACATGTTTGCTGAACCTCGG 58.762 50.000 0.00 0.00 37.45 4.63
3136 3900 3.923017 CTGAACCTCGGCAATCTTTTT 57.077 42.857 0.00 0.00 0.00 1.94
3137 3901 3.568538 CTGAACCTCGGCAATCTTTTTG 58.431 45.455 0.00 0.00 0.00 2.44
3138 3902 2.288152 TGAACCTCGGCAATCTTTTTGC 60.288 45.455 1.76 1.76 44.22 3.68
3173 3937 5.957842 TTTATTGCGGAATTTCACTCAGT 57.042 34.783 7.69 0.00 0.00 3.41
3174 3938 5.545658 TTATTGCGGAATTTCACTCAGTC 57.454 39.130 7.69 0.00 0.00 3.51
3175 3939 2.542020 TGCGGAATTTCACTCAGTCA 57.458 45.000 0.00 0.00 0.00 3.41
3176 3940 2.143122 TGCGGAATTTCACTCAGTCAC 58.857 47.619 0.00 0.00 0.00 3.67
3177 3941 1.126846 GCGGAATTTCACTCAGTCACG 59.873 52.381 0.00 0.00 0.00 4.35
3178 3942 2.404215 CGGAATTTCACTCAGTCACGT 58.596 47.619 0.00 0.00 0.00 4.49
3179 3943 2.408704 CGGAATTTCACTCAGTCACGTC 59.591 50.000 0.00 0.00 0.00 4.34
3180 3944 3.654414 GGAATTTCACTCAGTCACGTCT 58.346 45.455 0.00 0.00 0.00 4.18
3181 3945 4.615223 CGGAATTTCACTCAGTCACGTCTA 60.615 45.833 0.00 0.00 0.00 2.59
3182 3946 5.411781 GGAATTTCACTCAGTCACGTCTAT 58.588 41.667 0.00 0.00 0.00 1.98
3183 3947 5.289675 GGAATTTCACTCAGTCACGTCTATG 59.710 44.000 0.00 0.00 0.00 2.23
3184 3948 2.921634 TCACTCAGTCACGTCTATGC 57.078 50.000 0.00 0.00 0.00 3.14
3185 3949 1.472878 TCACTCAGTCACGTCTATGCC 59.527 52.381 0.00 0.00 0.00 4.40
3186 3950 1.202348 CACTCAGTCACGTCTATGCCA 59.798 52.381 0.00 0.00 0.00 4.92
3187 3951 1.893137 ACTCAGTCACGTCTATGCCAA 59.107 47.619 0.00 0.00 0.00 4.52
3188 3952 2.094494 ACTCAGTCACGTCTATGCCAAG 60.094 50.000 0.00 0.00 0.00 3.61
3189 3953 1.002366 CAGTCACGTCTATGCCAAGC 58.998 55.000 0.00 0.00 0.00 4.01
3190 3954 0.608130 AGTCACGTCTATGCCAAGCA 59.392 50.000 0.00 0.00 44.86 3.91
3191 3955 0.721718 GTCACGTCTATGCCAAGCAC 59.278 55.000 0.00 0.00 43.04 4.40
3192 3956 0.391130 TCACGTCTATGCCAAGCACC 60.391 55.000 0.00 0.00 43.04 5.01
3193 3957 1.078426 ACGTCTATGCCAAGCACCC 60.078 57.895 0.00 0.00 43.04 4.61
3194 3958 1.078497 CGTCTATGCCAAGCACCCA 60.078 57.895 0.00 0.00 43.04 4.51
3195 3959 0.464373 CGTCTATGCCAAGCACCCAT 60.464 55.000 0.00 0.00 43.04 4.00
3196 3960 1.027357 GTCTATGCCAAGCACCCATG 58.973 55.000 0.00 0.00 43.04 3.66
3197 3961 0.918258 TCTATGCCAAGCACCCATGA 59.082 50.000 0.00 0.00 43.04 3.07
3198 3962 1.284491 TCTATGCCAAGCACCCATGAA 59.716 47.619 0.00 0.00 43.04 2.57
3199 3963 2.101783 CTATGCCAAGCACCCATGAAA 58.898 47.619 0.00 0.00 43.04 2.69
3200 3964 1.350071 ATGCCAAGCACCCATGAAAA 58.650 45.000 0.00 0.00 43.04 2.29
3201 3965 0.392336 TGCCAAGCACCCATGAAAAC 59.608 50.000 0.00 0.00 31.71 2.43
3202 3966 0.392336 GCCAAGCACCCATGAAAACA 59.608 50.000 0.00 0.00 0.00 2.83
3203 3967 1.002315 GCCAAGCACCCATGAAAACAT 59.998 47.619 0.00 0.00 0.00 2.71
3204 3968 2.550639 GCCAAGCACCCATGAAAACATT 60.551 45.455 0.00 0.00 0.00 2.71
3205 3969 3.742385 CCAAGCACCCATGAAAACATTT 58.258 40.909 0.00 0.00 0.00 2.32
3206 3970 4.802248 GCCAAGCACCCATGAAAACATTTA 60.802 41.667 0.00 0.00 0.00 1.40
3207 3971 5.490159 CCAAGCACCCATGAAAACATTTAT 58.510 37.500 0.00 0.00 0.00 1.40
3208 3972 5.939296 CCAAGCACCCATGAAAACATTTATT 59.061 36.000 0.00 0.00 0.00 1.40
3209 3973 7.102346 CCAAGCACCCATGAAAACATTTATTA 58.898 34.615 0.00 0.00 0.00 0.98
3210 3974 7.064490 CCAAGCACCCATGAAAACATTTATTAC 59.936 37.037 0.00 0.00 0.00 1.89
3211 3975 7.238486 AGCACCCATGAAAACATTTATTACA 57.762 32.000 0.00 0.00 0.00 2.41
3212 3976 7.322664 AGCACCCATGAAAACATTTATTACAG 58.677 34.615 0.00 0.00 0.00 2.74
3213 3977 7.178274 AGCACCCATGAAAACATTTATTACAGA 59.822 33.333 0.00 0.00 0.00 3.41
3214 3978 7.816995 GCACCCATGAAAACATTTATTACAGAA 59.183 33.333 0.00 0.00 0.00 3.02
3215 3979 9.874205 CACCCATGAAAACATTTATTACAGAAT 57.126 29.630 0.00 0.00 0.00 2.40
3224 3988 9.533831 AAACATTTATTACAGAATTCCAGGAGT 57.466 29.630 0.65 0.00 0.00 3.85
3225 3989 8.738645 ACATTTATTACAGAATTCCAGGAGTC 57.261 34.615 0.65 0.00 0.00 3.36
3226 3990 8.328758 ACATTTATTACAGAATTCCAGGAGTCA 58.671 33.333 0.65 0.00 0.00 3.41
3227 3991 9.347240 CATTTATTACAGAATTCCAGGAGTCAT 57.653 33.333 0.65 0.00 0.00 3.06
3228 3992 8.737168 TTTATTACAGAATTCCAGGAGTCATG 57.263 34.615 0.65 0.00 0.00 3.07
3229 3993 5.762179 TTACAGAATTCCAGGAGTCATGT 57.238 39.130 3.80 7.07 0.00 3.21
3230 3994 3.947868 ACAGAATTCCAGGAGTCATGTG 58.052 45.455 3.80 0.00 0.00 3.21
3231 3995 3.328931 ACAGAATTCCAGGAGTCATGTGT 59.671 43.478 3.80 0.00 0.00 3.72
3232 3996 3.937706 CAGAATTCCAGGAGTCATGTGTC 59.062 47.826 3.80 0.00 0.00 3.67
3233 3997 3.843027 AGAATTCCAGGAGTCATGTGTCT 59.157 43.478 3.80 0.00 0.00 3.41
3234 3998 3.623906 ATTCCAGGAGTCATGTGTCTG 57.376 47.619 3.80 0.00 0.00 3.51
3235 3999 0.610174 TCCAGGAGTCATGTGTCTGC 59.390 55.000 3.80 0.00 0.00 4.26
3236 4000 0.392193 CCAGGAGTCATGTGTCTGCC 60.392 60.000 3.80 0.00 0.00 4.85
3237 4001 0.322648 CAGGAGTCATGTGTCTGCCA 59.677 55.000 0.00 0.00 0.00 4.92
3238 4002 1.059098 AGGAGTCATGTGTCTGCCAA 58.941 50.000 0.00 0.00 0.00 4.52
3239 4003 1.002888 AGGAGTCATGTGTCTGCCAAG 59.997 52.381 0.00 0.00 0.00 3.61
3240 4004 0.801251 GAGTCATGTGTCTGCCAAGC 59.199 55.000 0.00 0.00 0.00 4.01
3241 4005 0.109153 AGTCATGTGTCTGCCAAGCA 59.891 50.000 0.00 0.00 36.92 3.91
3242 4006 0.239347 GTCATGTGTCTGCCAAGCAC 59.761 55.000 0.00 0.00 33.79 4.40
3243 4007 0.890542 TCATGTGTCTGCCAAGCACC 60.891 55.000 0.00 0.00 33.79 5.01
3244 4008 1.604593 ATGTGTCTGCCAAGCACCC 60.605 57.895 0.00 0.00 33.79 4.61
3245 4009 3.357079 GTGTCTGCCAAGCACCCG 61.357 66.667 0.00 0.00 33.79 5.28
3246 4010 3.872603 TGTCTGCCAAGCACCCGT 61.873 61.111 0.00 0.00 33.79 5.28
3247 4011 2.345991 GTCTGCCAAGCACCCGTA 59.654 61.111 0.00 0.00 33.79 4.02
3248 4012 1.741770 GTCTGCCAAGCACCCGTAG 60.742 63.158 0.00 0.00 33.79 3.51
3249 4013 1.911269 TCTGCCAAGCACCCGTAGA 60.911 57.895 0.00 0.00 33.79 2.59
3250 4014 1.448540 CTGCCAAGCACCCGTAGAG 60.449 63.158 0.00 0.00 33.79 2.43
3251 4015 1.888436 CTGCCAAGCACCCGTAGAGA 61.888 60.000 0.00 0.00 33.79 3.10
3252 4016 1.264749 TGCCAAGCACCCGTAGAGAT 61.265 55.000 0.00 0.00 31.71 2.75
3253 4017 0.750850 GCCAAGCACCCGTAGAGATA 59.249 55.000 0.00 0.00 0.00 1.98
3254 4018 1.344763 GCCAAGCACCCGTAGAGATAT 59.655 52.381 0.00 0.00 0.00 1.63
3255 4019 2.561419 GCCAAGCACCCGTAGAGATATA 59.439 50.000 0.00 0.00 0.00 0.86
3256 4020 3.614390 GCCAAGCACCCGTAGAGATATAC 60.614 52.174 0.00 0.00 0.00 1.47
3257 4021 3.827302 CCAAGCACCCGTAGAGATATACT 59.173 47.826 0.00 0.00 0.00 2.12
3258 4022 4.082679 CCAAGCACCCGTAGAGATATACTC 60.083 50.000 0.00 0.00 45.22 2.59
3269 4033 4.323553 GAGATATACTCGGCAAACAGGT 57.676 45.455 0.00 0.00 35.84 4.00
3270 4034 5.449107 GAGATATACTCGGCAAACAGGTA 57.551 43.478 0.00 0.00 35.84 3.08
3271 4035 5.839621 GAGATATACTCGGCAAACAGGTAA 58.160 41.667 0.00 0.00 35.84 2.85
3272 4036 5.598769 AGATATACTCGGCAAACAGGTAAC 58.401 41.667 0.00 0.00 0.00 2.50
3273 4037 2.068837 TACTCGGCAAACAGGTAACG 57.931 50.000 0.00 0.00 46.39 3.18
3274 4038 0.601841 ACTCGGCAAACAGGTAACGG 60.602 55.000 0.00 0.00 46.39 4.44
3275 4039 1.296056 CTCGGCAAACAGGTAACGGG 61.296 60.000 0.00 0.00 46.39 5.28
3276 4040 1.598685 CGGCAAACAGGTAACGGGT 60.599 57.895 0.00 0.00 46.39 5.28
3277 4041 1.167781 CGGCAAACAGGTAACGGGTT 61.168 55.000 0.00 0.00 44.96 4.11
3280 4044 2.723231 AAACAGGTAACGGGTTGGC 58.277 52.632 0.00 0.00 41.41 4.52
3281 4045 0.824595 AAACAGGTAACGGGTTGGCC 60.825 55.000 0.00 0.00 41.41 5.36
3282 4046 2.744709 CAGGTAACGGGTTGGCCG 60.745 66.667 0.00 0.00 46.39 6.13
3283 4047 4.024545 AGGTAACGGGTTGGCCGG 62.025 66.667 0.00 0.00 46.39 6.13
3285 4049 3.051479 GTAACGGGTTGGCCGGTG 61.051 66.667 1.90 0.00 45.94 4.94
3286 4050 3.558276 TAACGGGTTGGCCGGTGT 61.558 61.111 1.90 0.00 45.94 4.16
3287 4051 3.828694 TAACGGGTTGGCCGGTGTG 62.829 63.158 1.90 0.00 45.94 3.82
3290 4054 4.572571 GGGTTGGCCGGTGTGACA 62.573 66.667 1.90 0.00 34.97 3.58
3291 4055 3.284449 GGTTGGCCGGTGTGACAC 61.284 66.667 7.29 7.29 0.00 3.67
3292 4056 3.645975 GTTGGCCGGTGTGACACG 61.646 66.667 9.90 5.19 34.83 4.49
3293 4057 4.164087 TTGGCCGGTGTGACACGT 62.164 61.111 9.90 0.00 34.83 4.49
3294 4058 2.794028 TTGGCCGGTGTGACACGTA 61.794 57.895 9.90 0.00 34.83 3.57
3295 4059 2.102109 TTGGCCGGTGTGACACGTAT 62.102 55.000 9.90 0.00 34.83 3.06
3296 4060 1.808390 GGCCGGTGTGACACGTATC 60.808 63.158 9.90 0.00 34.83 2.24
3297 4061 1.080366 GCCGGTGTGACACGTATCA 60.080 57.895 9.90 0.00 34.83 2.15
3298 4062 0.668096 GCCGGTGTGACACGTATCAA 60.668 55.000 9.90 0.00 34.83 2.57
3299 4063 1.346365 CCGGTGTGACACGTATCAAG 58.654 55.000 9.90 0.00 34.83 3.02
3300 4064 1.346365 CGGTGTGACACGTATCAAGG 58.654 55.000 9.90 0.00 34.83 3.61
3301 4065 1.068125 CGGTGTGACACGTATCAAGGA 60.068 52.381 9.90 0.00 34.83 3.36
3302 4066 2.334838 GGTGTGACACGTATCAAGGAC 58.665 52.381 9.90 0.00 34.83 3.85
3303 4067 2.029290 GGTGTGACACGTATCAAGGACT 60.029 50.000 9.90 0.00 34.83 3.85
3304 4068 3.192001 GGTGTGACACGTATCAAGGACTA 59.808 47.826 9.90 0.00 34.83 2.59
3305 4069 4.321452 GGTGTGACACGTATCAAGGACTAA 60.321 45.833 9.90 0.00 34.83 2.24
3306 4070 4.620184 GTGTGACACGTATCAAGGACTAAC 59.380 45.833 0.00 0.00 0.00 2.34
3307 4071 4.521639 TGTGACACGTATCAAGGACTAACT 59.478 41.667 0.00 0.00 0.00 2.24
3308 4072 4.857588 GTGACACGTATCAAGGACTAACTG 59.142 45.833 0.00 0.00 0.00 3.16
3309 4073 4.763279 TGACACGTATCAAGGACTAACTGA 59.237 41.667 0.00 0.00 0.00 3.41
3310 4074 5.056894 ACACGTATCAAGGACTAACTGAC 57.943 43.478 0.00 0.00 0.00 3.51
3311 4075 4.096311 CACGTATCAAGGACTAACTGACG 58.904 47.826 0.00 0.00 0.00 4.35
3312 4076 3.128242 ACGTATCAAGGACTAACTGACGG 59.872 47.826 0.00 0.00 32.33 4.79
3313 4077 3.128242 CGTATCAAGGACTAACTGACGGT 59.872 47.826 0.00 0.00 0.00 4.83
3314 4078 4.380233 CGTATCAAGGACTAACTGACGGTT 60.380 45.833 4.78 4.78 41.54 4.44
3315 4079 3.380479 TCAAGGACTAACTGACGGTTG 57.620 47.619 10.03 2.93 38.75 3.77
3316 4080 2.036733 TCAAGGACTAACTGACGGTTGG 59.963 50.000 10.03 9.41 41.34 3.77
3317 4081 0.974383 AGGACTAACTGACGGTTGGG 59.026 55.000 14.29 7.68 40.13 4.12
3318 4082 0.672711 GGACTAACTGACGGTTGGGC 60.673 60.000 14.29 11.30 42.74 5.36
3319 4083 0.320697 GACTAACTGACGGTTGGGCT 59.679 55.000 14.29 0.00 40.67 5.19
3320 4084 0.763035 ACTAACTGACGGTTGGGCTT 59.237 50.000 14.29 0.00 40.13 4.35
3321 4085 1.270678 ACTAACTGACGGTTGGGCTTC 60.271 52.381 14.29 0.00 40.13 3.86
3322 4086 0.035739 TAACTGACGGTTGGGCTTCC 59.964 55.000 10.03 0.00 38.75 3.46
3323 4087 1.705997 AACTGACGGTTGGGCTTCCT 61.706 55.000 0.00 0.00 36.70 3.36
3324 4088 0.834687 ACTGACGGTTGGGCTTCCTA 60.835 55.000 0.00 0.00 0.00 2.94
3325 4089 0.541863 CTGACGGTTGGGCTTCCTAT 59.458 55.000 0.00 0.00 0.00 2.57
3326 4090 0.251916 TGACGGTTGGGCTTCCTATG 59.748 55.000 0.00 0.00 0.00 2.23
3327 4091 1.077716 ACGGTTGGGCTTCCTATGC 60.078 57.895 0.00 0.00 0.00 3.14
3334 4098 2.993539 GGCTTCCTATGCCGAGTTC 58.006 57.895 0.00 0.00 41.03 3.01
3335 4099 0.533085 GGCTTCCTATGCCGAGTTCC 60.533 60.000 0.00 0.00 41.03 3.62
3336 4100 0.178068 GCTTCCTATGCCGAGTTCCA 59.822 55.000 0.00 0.00 0.00 3.53
3337 4101 1.202698 GCTTCCTATGCCGAGTTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
3338 4102 2.037251 GCTTCCTATGCCGAGTTCCATA 59.963 50.000 0.00 0.00 0.00 2.74
3339 4103 3.494398 GCTTCCTATGCCGAGTTCCATAA 60.494 47.826 0.00 0.00 0.00 1.90
3340 4104 3.746045 TCCTATGCCGAGTTCCATAAC 57.254 47.619 0.00 0.00 35.72 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.992114 AAGCTCCTCACGGCGAGT 60.992 61.111 16.62 0.00 40.48 4.18
50 51 3.580193 GTAGCTGCGCCATGGCTG 61.580 66.667 33.07 25.88 39.32 4.85
51 52 3.790437 AGTAGCTGCGCCATGGCT 61.790 61.111 33.07 17.48 39.32 4.75
96 97 3.188786 GCGCTACCGGTTGAGCAG 61.189 66.667 32.29 22.21 38.69 4.24
170 175 1.155889 CAGCAACAGTAACATCCGCA 58.844 50.000 0.00 0.00 0.00 5.69
172 177 1.732259 GACCAGCAACAGTAACATCCG 59.268 52.381 0.00 0.00 0.00 4.18
175 180 3.403038 GTGAGACCAGCAACAGTAACAT 58.597 45.455 0.00 0.00 0.00 2.71
183 188 1.961277 CACGGGTGAGACCAGCAAC 60.961 63.158 0.00 0.00 41.02 4.17
184 189 2.137528 TCACGGGTGAGACCAGCAA 61.138 57.895 0.00 0.00 41.02 3.91
230 235 1.137479 CATCAACATTGGACCATGCCC 59.863 52.381 0.00 0.00 0.00 5.36
240 245 1.512230 CCCGCCACCATCAACATTG 59.488 57.895 0.00 0.00 0.00 2.82
258 263 3.093278 CGTCCTCATTGGCTTCGC 58.907 61.111 0.00 0.00 35.26 4.70
265 270 0.036952 ACTCACTGGCGTCCTCATTG 60.037 55.000 0.00 0.00 0.00 2.82
266 271 1.478510 CTACTCACTGGCGTCCTCATT 59.521 52.381 0.00 0.00 0.00 2.57
271 276 1.511768 GTCCTACTCACTGGCGTCC 59.488 63.158 0.00 0.00 0.00 4.79
278 283 1.210967 CTCCTCCTCGTCCTACTCACT 59.789 57.143 0.00 0.00 0.00 3.41
314 319 4.293648 TGGTCGTCGTGGTGCCTG 62.294 66.667 0.00 0.00 0.00 4.85
336 341 4.012895 AACGCCGCGCAAGAACTG 62.013 61.111 13.88 0.00 43.02 3.16
347 352 4.524318 AGGGTATCGCCAACGCCG 62.524 66.667 0.00 0.00 39.84 6.46
363 368 1.211969 CGTCGTGGTGTGTAGGGAG 59.788 63.158 0.00 0.00 0.00 4.30
388 393 1.073897 GGTGACTGCTCAAGGCCTT 59.926 57.895 13.78 13.78 40.92 4.35
465 470 1.672356 CAGGACGGACAAGGCAAGG 60.672 63.158 0.00 0.00 0.00 3.61
504 509 2.223377 AGGAATTTCGTCGAACACTTGC 59.777 45.455 7.29 7.26 0.00 4.01
524 529 9.016623 GCAAAGTAAAACTTACAGTTGGTTTAG 57.983 33.333 11.67 0.00 38.66 1.85
547 552 2.420967 GCCGATCCCCTAAAGTTAGCAA 60.421 50.000 0.00 0.00 0.00 3.91
548 553 1.140252 GCCGATCCCCTAAAGTTAGCA 59.860 52.381 0.00 0.00 0.00 3.49
576 581 4.914312 TGTACTCCACTAAAATTTCGCG 57.086 40.909 0.00 0.00 0.00 5.87
596 601 8.614346 GGAGTCTATACCTTAGCGAAGTATATG 58.386 40.741 5.81 0.00 0.00 1.78
600 605 4.993584 CGGAGTCTATACCTTAGCGAAGTA 59.006 45.833 5.81 0.00 0.00 2.24
601 606 3.814283 CGGAGTCTATACCTTAGCGAAGT 59.186 47.826 5.81 0.00 0.00 3.01
602 607 3.365164 GCGGAGTCTATACCTTAGCGAAG 60.365 52.174 0.00 0.00 0.00 3.79
603 608 2.551459 GCGGAGTCTATACCTTAGCGAA 59.449 50.000 0.00 0.00 0.00 4.70
604 609 2.149578 GCGGAGTCTATACCTTAGCGA 58.850 52.381 0.00 0.00 0.00 4.93
605 610 2.152830 AGCGGAGTCTATACCTTAGCG 58.847 52.381 0.00 0.00 0.00 4.26
606 611 5.900865 ATTAGCGGAGTCTATACCTTAGC 57.099 43.478 0.00 0.00 0.00 3.09
609 614 7.656542 GCTAAAAATTAGCGGAGTCTATACCTT 59.343 37.037 6.38 0.00 0.00 3.50
610 615 7.153315 GCTAAAAATTAGCGGAGTCTATACCT 58.847 38.462 6.38 0.00 0.00 3.08
611 616 6.927381 TGCTAAAAATTAGCGGAGTCTATACC 59.073 38.462 15.17 0.00 43.13 2.73
612 617 7.941795 TGCTAAAAATTAGCGGAGTCTATAC 57.058 36.000 15.17 0.00 43.13 1.47
628 633 6.404293 GGCATTTCTAACCGATCTGCTAAAAA 60.404 38.462 0.00 0.00 32.79 1.94
635 640 3.199880 AGGGCATTTCTAACCGATCTG 57.800 47.619 0.00 0.00 0.00 2.90
636 641 3.933861 AAGGGCATTTCTAACCGATCT 57.066 42.857 0.00 0.00 0.00 2.75
640 645 2.354821 GCACTAAGGGCATTTCTAACCG 59.645 50.000 0.00 0.00 0.00 4.44
688 694 4.214986 TCCCACTGAATAAGCGAAATGA 57.785 40.909 0.00 0.00 0.00 2.57
822 828 2.126965 GTCGGTCGACGGTCAGTG 60.127 66.667 20.84 0.53 44.45 3.66
878 884 3.369892 GCCACTGGAGCTAATTCTTGAGA 60.370 47.826 0.00 0.00 0.00 3.27
885 891 0.698238 TGTGGCCACTGGAGCTAATT 59.302 50.000 34.75 0.00 0.00 1.40
921 934 2.077821 TAGCACGTCGTTGTGGCTGA 62.078 55.000 15.84 1.03 40.26 4.26
991 1006 1.620822 ACTTGGGCTGTGTGGAAATC 58.379 50.000 0.00 0.00 0.00 2.17
1307 1328 2.122989 ACCCTGACCGTGGTGACT 60.123 61.111 0.00 0.00 32.36 3.41
1543 1605 8.251026 TCTACAAGAACTGACCAACATACTATG 58.749 37.037 0.00 0.00 0.00 2.23
1545 1607 7.450634 ACTCTACAAGAACTGACCAACATACTA 59.549 37.037 0.00 0.00 0.00 1.82
1546 1608 6.267928 ACTCTACAAGAACTGACCAACATACT 59.732 38.462 0.00 0.00 0.00 2.12
1547 1609 6.456501 ACTCTACAAGAACTGACCAACATAC 58.543 40.000 0.00 0.00 0.00 2.39
1766 1889 1.757682 ACCTCTCCTCTGACGTGATC 58.242 55.000 0.00 0.00 0.00 2.92
2052 2620 1.205893 GGCGATCCAGAACTTCTCACT 59.794 52.381 0.00 0.00 0.00 3.41
2180 2754 1.753930 CATGCATGGGTCAAGCTGTA 58.246 50.000 19.40 0.00 0.00 2.74
2255 2865 0.524604 CGTACGATCGATGCACACCA 60.525 55.000 24.34 0.00 0.00 4.17
2256 2866 1.206745 CCGTACGATCGATGCACACC 61.207 60.000 24.34 0.00 0.00 4.16
2257 2867 0.248336 TCCGTACGATCGATGCACAC 60.248 55.000 24.34 8.17 0.00 3.82
2258 2868 0.666374 ATCCGTACGATCGATGCACA 59.334 50.000 24.34 0.79 0.00 4.57
2411 3030 8.781196 TCGAAGCAAGTCTATATATTAACGAGT 58.219 33.333 0.00 0.00 0.00 4.18
2413 3032 7.743400 CGTCGAAGCAAGTCTATATATTAACGA 59.257 37.037 0.00 0.00 0.00 3.85
2415 3034 8.945758 TCGTCGAAGCAAGTCTATATATTAAC 57.054 34.615 0.00 0.00 0.00 2.01
2416 3035 9.955208 TTTCGTCGAAGCAAGTCTATATATTAA 57.045 29.630 7.86 0.00 0.00 1.40
2419 3038 8.516234 AGATTTCGTCGAAGCAAGTCTATATAT 58.484 33.333 7.86 0.00 0.00 0.86
2420 3039 7.872881 AGATTTCGTCGAAGCAAGTCTATATA 58.127 34.615 7.86 0.00 0.00 0.86
2426 3045 4.391140 AAAGATTTCGTCGAAGCAAGTC 57.609 40.909 7.86 3.62 0.00 3.01
2579 3297 2.371841 TCGGTGAAATCCCATATCCCAG 59.628 50.000 0.00 0.00 0.00 4.45
2586 3304 5.421693 TGAAATGAAATCGGTGAAATCCCAT 59.578 36.000 0.00 0.00 0.00 4.00
2615 3333 1.117994 TAGATCACTCTGCCAGGCTG 58.882 55.000 14.15 13.09 32.66 4.85
2619 3337 2.877168 GGCAAATAGATCACTCTGCCAG 59.123 50.000 18.65 0.00 40.57 4.85
2655 3373 3.326747 CGAGTCCCTTTCGAGTCAATTT 58.673 45.455 0.00 0.00 40.36 1.82
2656 3374 2.353803 CCGAGTCCCTTTCGAGTCAATT 60.354 50.000 0.00 0.00 40.36 2.32
2657 3375 1.204941 CCGAGTCCCTTTCGAGTCAAT 59.795 52.381 0.00 0.00 40.36 2.57
2658 3376 0.601558 CCGAGTCCCTTTCGAGTCAA 59.398 55.000 0.00 0.00 40.36 3.18
2659 3377 1.874345 GCCGAGTCCCTTTCGAGTCA 61.874 60.000 0.00 0.00 40.36 3.41
2660 3378 1.153804 GCCGAGTCCCTTTCGAGTC 60.154 63.158 0.00 0.00 40.36 3.36
2661 3379 2.971452 GCCGAGTCCCTTTCGAGT 59.029 61.111 0.00 0.00 40.36 4.18
2663 3381 1.808531 TTTCGCCGAGTCCCTTTCGA 61.809 55.000 0.00 0.00 40.36 3.71
2698 3461 4.339814 AGGAACTCGAGGATTATGAGACAC 59.660 45.833 18.41 0.00 33.93 3.67
2740 3503 8.040132 TGGTTTTCTTTTTGAAATGTCAGTCAT 58.960 29.630 0.00 0.00 43.34 3.06
2766 3530 7.692460 TCTGTCAATCATTGCAGAGTATTTT 57.308 32.000 16.13 0.00 38.20 1.82
2770 3534 5.121105 CCATCTGTCAATCATTGCAGAGTA 58.879 41.667 21.41 7.14 42.55 2.59
2772 3536 3.315470 CCCATCTGTCAATCATTGCAGAG 59.685 47.826 21.41 15.59 42.55 3.35
2783 3547 2.141011 CTGTGGGGCCCATCTGTCAA 62.141 60.000 31.48 7.73 35.28 3.18
2787 3551 2.273449 GTCTGTGGGGCCCATCTG 59.727 66.667 31.48 23.61 35.28 2.90
2811 3575 1.470098 TGGAGGAAGTAACGTCGCTAC 59.530 52.381 0.00 0.00 0.00 3.58
2814 3578 1.925185 GAATGGAGGAAGTAACGTCGC 59.075 52.381 0.00 0.00 0.00 5.19
2818 3582 3.629142 AAGGGAATGGAGGAAGTAACG 57.371 47.619 0.00 0.00 0.00 3.18
2856 3620 8.143835 GCCCTGTATAGATGCAAAATGTATTTT 58.856 33.333 0.00 0.00 40.37 1.82
2857 3621 7.255942 GGCCCTGTATAGATGCAAAATGTATTT 60.256 37.037 0.00 0.00 0.00 1.40
2858 3622 6.209391 GGCCCTGTATAGATGCAAAATGTATT 59.791 38.462 0.00 0.00 0.00 1.89
2859 3623 5.711976 GGCCCTGTATAGATGCAAAATGTAT 59.288 40.000 0.00 0.00 0.00 2.29
2860 3624 5.070001 GGCCCTGTATAGATGCAAAATGTA 58.930 41.667 0.00 0.00 0.00 2.29
2861 3625 3.891366 GGCCCTGTATAGATGCAAAATGT 59.109 43.478 0.00 0.00 0.00 2.71
2862 3626 3.890756 TGGCCCTGTATAGATGCAAAATG 59.109 43.478 0.00 0.00 0.00 2.32
2863 3627 3.891366 GTGGCCCTGTATAGATGCAAAAT 59.109 43.478 0.00 0.00 0.00 1.82
2864 3628 3.053693 AGTGGCCCTGTATAGATGCAAAA 60.054 43.478 0.00 0.00 0.00 2.44
2865 3629 2.509548 AGTGGCCCTGTATAGATGCAAA 59.490 45.455 0.00 0.00 0.00 3.68
2866 3630 2.126882 AGTGGCCCTGTATAGATGCAA 58.873 47.619 0.00 0.00 0.00 4.08
2867 3631 1.806496 AGTGGCCCTGTATAGATGCA 58.194 50.000 0.00 0.00 0.00 3.96
2868 3632 2.938956 AAGTGGCCCTGTATAGATGC 57.061 50.000 0.00 0.00 0.00 3.91
2869 3633 4.887748 CTGTAAGTGGCCCTGTATAGATG 58.112 47.826 0.00 0.00 0.00 2.90
2925 3689 9.490663 GCATGCAAGTATTAAACAAGTTACTAG 57.509 33.333 14.21 0.00 0.00 2.57
2926 3690 9.004717 TGCATGCAAGTATTAAACAAGTTACTA 57.995 29.630 20.30 0.00 0.00 1.82
2927 3691 7.881142 TGCATGCAAGTATTAAACAAGTTACT 58.119 30.769 20.30 0.00 0.00 2.24
2928 3692 8.586273 CATGCATGCAAGTATTAAACAAGTTAC 58.414 33.333 26.68 0.00 0.00 2.50
2929 3693 8.303156 ACATGCATGCAAGTATTAAACAAGTTA 58.697 29.630 25.90 0.00 0.00 2.24
2930 3694 7.153985 ACATGCATGCAAGTATTAAACAAGTT 58.846 30.769 25.90 0.00 0.00 2.66
2931 3695 6.690530 ACATGCATGCAAGTATTAAACAAGT 58.309 32.000 25.90 0.43 0.00 3.16
2932 3696 7.970061 ACTACATGCATGCAAGTATTAAACAAG 59.030 33.333 29.78 21.31 31.16 3.16
2933 3697 7.825681 ACTACATGCATGCAAGTATTAAACAA 58.174 30.769 29.78 12.28 31.16 2.83
2934 3698 7.120432 TGACTACATGCATGCAAGTATTAAACA 59.880 33.333 29.78 21.68 31.16 2.83
2935 3699 7.471721 TGACTACATGCATGCAAGTATTAAAC 58.528 34.615 29.78 19.99 31.16 2.01
2936 3700 7.622893 TGACTACATGCATGCAAGTATTAAA 57.377 32.000 29.78 16.50 31.16 1.52
2937 3701 7.806409 ATGACTACATGCATGCAAGTATTAA 57.194 32.000 29.78 20.65 35.21 1.40
2938 3702 8.900983 TTATGACTACATGCATGCAAGTATTA 57.099 30.769 29.78 20.56 37.87 0.98
2939 3703 7.806409 TTATGACTACATGCATGCAAGTATT 57.194 32.000 29.78 25.52 37.87 1.89
2940 3704 7.094506 CCATTATGACTACATGCATGCAAGTAT 60.095 37.037 29.78 20.73 37.87 2.12
2941 3705 6.205270 CCATTATGACTACATGCATGCAAGTA 59.795 38.462 28.33 28.33 37.87 2.24
2942 3706 5.009310 CCATTATGACTACATGCATGCAAGT 59.991 40.000 29.11 29.11 37.87 3.16
2943 3707 5.458015 CCATTATGACTACATGCATGCAAG 58.542 41.667 26.68 23.45 37.87 4.01
2944 3708 4.261698 GCCATTATGACTACATGCATGCAA 60.262 41.667 26.68 13.91 37.87 4.08
2945 3709 3.253921 GCCATTATGACTACATGCATGCA 59.746 43.478 26.53 25.04 37.87 3.96
2946 3710 3.253921 TGCCATTATGACTACATGCATGC 59.746 43.478 26.53 11.82 37.87 4.06
2947 3711 5.638596 ATGCCATTATGACTACATGCATG 57.361 39.130 25.09 25.09 39.34 4.06
2948 3712 5.537295 ACAATGCCATTATGACTACATGCAT 59.463 36.000 0.00 0.00 41.12 3.96
2949 3713 4.888823 ACAATGCCATTATGACTACATGCA 59.111 37.500 0.00 0.00 36.60 3.96
2950 3714 5.217393 CACAATGCCATTATGACTACATGC 58.783 41.667 0.00 0.00 37.87 4.06
2951 3715 5.009310 AGCACAATGCCATTATGACTACATG 59.991 40.000 0.00 0.00 46.52 3.21
2952 3716 5.135383 AGCACAATGCCATTATGACTACAT 58.865 37.500 0.00 0.00 46.52 2.29
2953 3717 4.525996 AGCACAATGCCATTATGACTACA 58.474 39.130 0.00 0.00 46.52 2.74
2954 3718 5.760253 AGTAGCACAATGCCATTATGACTAC 59.240 40.000 16.00 16.00 46.52 2.73
2955 3719 5.928976 AGTAGCACAATGCCATTATGACTA 58.071 37.500 0.00 0.00 46.52 2.59
2956 3720 4.785301 AGTAGCACAATGCCATTATGACT 58.215 39.130 0.00 0.00 46.52 3.41
2957 3721 5.297776 AGAAGTAGCACAATGCCATTATGAC 59.702 40.000 0.00 0.00 46.52 3.06
2958 3722 5.439721 AGAAGTAGCACAATGCCATTATGA 58.560 37.500 0.00 0.00 46.52 2.15
2959 3723 5.762825 AGAAGTAGCACAATGCCATTATG 57.237 39.130 0.00 0.00 46.52 1.90
2960 3724 6.604795 AGAAAGAAGTAGCACAATGCCATTAT 59.395 34.615 0.00 0.00 46.52 1.28
2961 3725 5.945784 AGAAAGAAGTAGCACAATGCCATTA 59.054 36.000 0.00 0.00 46.52 1.90
2962 3726 4.768968 AGAAAGAAGTAGCACAATGCCATT 59.231 37.500 0.00 0.00 46.52 3.16
2963 3727 4.338879 AGAAAGAAGTAGCACAATGCCAT 58.661 39.130 0.00 0.00 46.52 4.40
2964 3728 3.753272 GAGAAAGAAGTAGCACAATGCCA 59.247 43.478 0.00 0.00 46.52 4.92
2965 3729 3.753272 TGAGAAAGAAGTAGCACAATGCC 59.247 43.478 0.00 0.00 46.52 4.40
2966 3730 5.557891 ATGAGAAAGAAGTAGCACAATGC 57.442 39.130 0.00 0.00 45.46 3.56
2967 3731 7.814642 AGAAATGAGAAAGAAGTAGCACAATG 58.185 34.615 0.00 0.00 0.00 2.82
2968 3732 7.992754 AGAAATGAGAAAGAAGTAGCACAAT 57.007 32.000 0.00 0.00 0.00 2.71
2969 3733 7.041098 GGAAGAAATGAGAAAGAAGTAGCACAA 60.041 37.037 0.00 0.00 0.00 3.33
2970 3734 6.428159 GGAAGAAATGAGAAAGAAGTAGCACA 59.572 38.462 0.00 0.00 0.00 4.57
2971 3735 6.652900 AGGAAGAAATGAGAAAGAAGTAGCAC 59.347 38.462 0.00 0.00 0.00 4.40
2972 3736 6.773638 AGGAAGAAATGAGAAAGAAGTAGCA 58.226 36.000 0.00 0.00 0.00 3.49
2973 3737 7.525759 CAAGGAAGAAATGAGAAAGAAGTAGC 58.474 38.462 0.00 0.00 0.00 3.58
2974 3738 7.173907 TGCAAGGAAGAAATGAGAAAGAAGTAG 59.826 37.037 0.00 0.00 0.00 2.57
2975 3739 6.998074 TGCAAGGAAGAAATGAGAAAGAAGTA 59.002 34.615 0.00 0.00 0.00 2.24
2976 3740 5.829924 TGCAAGGAAGAAATGAGAAAGAAGT 59.170 36.000 0.00 0.00 0.00 3.01
2977 3741 6.323203 TGCAAGGAAGAAATGAGAAAGAAG 57.677 37.500 0.00 0.00 0.00 2.85
2978 3742 6.684686 CATGCAAGGAAGAAATGAGAAAGAA 58.315 36.000 0.00 0.00 0.00 2.52
2979 3743 5.336213 GCATGCAAGGAAGAAATGAGAAAGA 60.336 40.000 14.21 0.00 0.00 2.52
2980 3744 4.863131 GCATGCAAGGAAGAAATGAGAAAG 59.137 41.667 14.21 0.00 0.00 2.62
2981 3745 4.281435 TGCATGCAAGGAAGAAATGAGAAA 59.719 37.500 20.30 0.00 0.00 2.52
2982 3746 3.827876 TGCATGCAAGGAAGAAATGAGAA 59.172 39.130 20.30 0.00 0.00 2.87
2983 3747 3.423749 TGCATGCAAGGAAGAAATGAGA 58.576 40.909 20.30 0.00 0.00 3.27
2984 3748 3.861276 TGCATGCAAGGAAGAAATGAG 57.139 42.857 20.30 0.00 0.00 2.90
2985 3749 4.118093 CATGCATGCAAGGAAGAAATGA 57.882 40.909 26.68 0.00 0.00 2.57
2999 3763 7.031372 GGATTATTAATACACCTGCATGCATG 58.969 38.462 22.97 22.70 0.00 4.06
3000 3764 6.153340 GGGATTATTAATACACCTGCATGCAT 59.847 38.462 22.97 9.00 0.00 3.96
3001 3765 5.476599 GGGATTATTAATACACCTGCATGCA 59.523 40.000 21.29 21.29 0.00 3.96
3002 3766 5.391950 CGGGATTATTAATACACCTGCATGC 60.392 44.000 11.82 11.82 0.00 4.06
3003 3767 5.123820 CCGGGATTATTAATACACCTGCATG 59.876 44.000 15.29 0.00 0.00 4.06
3004 3768 5.222048 ACCGGGATTATTAATACACCTGCAT 60.222 40.000 6.32 7.33 0.00 3.96
3005 3769 4.103469 ACCGGGATTATTAATACACCTGCA 59.897 41.667 6.32 0.00 0.00 4.41
3006 3770 4.648651 ACCGGGATTATTAATACACCTGC 58.351 43.478 6.32 3.54 0.00 4.85
3007 3771 7.716123 TGTTAACCGGGATTATTAATACACCTG 59.284 37.037 6.32 14.38 0.00 4.00
3008 3772 7.804147 TGTTAACCGGGATTATTAATACACCT 58.196 34.615 6.32 1.82 0.00 4.00
3009 3773 8.449251 TTGTTAACCGGGATTATTAATACACC 57.551 34.615 6.32 2.05 0.00 4.16
3017 3781 9.483916 CTTTTCTTTTTGTTAACCGGGATTATT 57.516 29.630 6.32 0.00 0.00 1.40
3018 3782 8.644216 ACTTTTCTTTTTGTTAACCGGGATTAT 58.356 29.630 6.32 0.00 0.00 1.28
3019 3783 8.009622 ACTTTTCTTTTTGTTAACCGGGATTA 57.990 30.769 6.32 0.00 0.00 1.75
3020 3784 6.880484 ACTTTTCTTTTTGTTAACCGGGATT 58.120 32.000 6.32 0.00 0.00 3.01
3021 3785 6.474140 ACTTTTCTTTTTGTTAACCGGGAT 57.526 33.333 6.32 0.00 0.00 3.85
3022 3786 5.918426 ACTTTTCTTTTTGTTAACCGGGA 57.082 34.783 6.32 0.00 0.00 5.14
3023 3787 5.292345 CCAACTTTTCTTTTTGTTAACCGGG 59.708 40.000 6.32 0.00 0.00 5.73
3024 3788 5.220510 GCCAACTTTTCTTTTTGTTAACCGG 60.221 40.000 0.00 0.00 0.00 5.28
3025 3789 5.579119 AGCCAACTTTTCTTTTTGTTAACCG 59.421 36.000 2.48 0.00 0.00 4.44
3026 3790 6.978343 AGCCAACTTTTCTTTTTGTTAACC 57.022 33.333 2.48 0.00 0.00 2.85
3027 3791 7.118535 TGGAAGCCAACTTTTCTTTTTGTTAAC 59.881 33.333 0.00 0.00 35.82 2.01
3028 3792 7.162082 TGGAAGCCAACTTTTCTTTTTGTTAA 58.838 30.769 0.00 0.00 35.82 2.01
3029 3793 6.702329 TGGAAGCCAACTTTTCTTTTTGTTA 58.298 32.000 0.00 0.00 35.82 2.41
3030 3794 5.555966 TGGAAGCCAACTTTTCTTTTTGTT 58.444 33.333 0.00 0.00 35.82 2.83
3031 3795 5.159273 TGGAAGCCAACTTTTCTTTTTGT 57.841 34.783 0.00 0.00 35.82 2.83
3032 3796 6.493449 TTTGGAAGCCAACTTTTCTTTTTG 57.507 33.333 0.00 0.00 43.82 2.44
3033 3797 6.741992 CTTTGGAAGCCAACTTTTCTTTTT 57.258 33.333 0.00 0.00 43.82 1.94
3073 3837 9.268268 CACAAACTCAAATTACAGGTACTAAGA 57.732 33.333 0.00 0.00 36.02 2.10
3074 3838 8.504005 CCACAAACTCAAATTACAGGTACTAAG 58.496 37.037 0.00 0.00 36.02 2.18
3075 3839 7.040961 GCCACAAACTCAAATTACAGGTACTAA 60.041 37.037 0.00 0.00 36.02 2.24
3076 3840 6.428771 GCCACAAACTCAAATTACAGGTACTA 59.571 38.462 0.00 0.00 36.02 1.82
3077 3841 5.240844 GCCACAAACTCAAATTACAGGTACT 59.759 40.000 0.00 0.00 43.88 2.73
3078 3842 5.458015 GCCACAAACTCAAATTACAGGTAC 58.542 41.667 0.00 0.00 0.00 3.34
3079 3843 4.521256 GGCCACAAACTCAAATTACAGGTA 59.479 41.667 0.00 0.00 0.00 3.08
3080 3844 3.320826 GGCCACAAACTCAAATTACAGGT 59.679 43.478 0.00 0.00 0.00 4.00
3081 3845 3.573967 AGGCCACAAACTCAAATTACAGG 59.426 43.478 5.01 0.00 0.00 4.00
3082 3846 4.853924 AGGCCACAAACTCAAATTACAG 57.146 40.909 5.01 0.00 0.00 2.74
3083 3847 4.404073 ACAAGGCCACAAACTCAAATTACA 59.596 37.500 5.01 0.00 0.00 2.41
3084 3848 4.944048 ACAAGGCCACAAACTCAAATTAC 58.056 39.130 5.01 0.00 0.00 1.89
3085 3849 5.594725 TGTACAAGGCCACAAACTCAAATTA 59.405 36.000 5.01 0.00 0.00 1.40
3086 3850 4.404073 TGTACAAGGCCACAAACTCAAATT 59.596 37.500 5.01 0.00 0.00 1.82
3087 3851 3.957497 TGTACAAGGCCACAAACTCAAAT 59.043 39.130 5.01 0.00 0.00 2.32
3088 3852 3.357203 TGTACAAGGCCACAAACTCAAA 58.643 40.909 5.01 0.00 0.00 2.69
3089 3853 3.006112 TGTACAAGGCCACAAACTCAA 57.994 42.857 5.01 0.00 0.00 3.02
3090 3854 2.719531 TGTACAAGGCCACAAACTCA 57.280 45.000 5.01 0.00 0.00 3.41
3091 3855 2.884639 ACATGTACAAGGCCACAAACTC 59.115 45.455 5.01 0.00 0.00 3.01
3092 3856 2.944129 ACATGTACAAGGCCACAAACT 58.056 42.857 5.01 0.00 0.00 2.66
3093 3857 3.726291 AACATGTACAAGGCCACAAAC 57.274 42.857 5.01 0.00 0.00 2.93
3094 3858 3.739519 GCAAACATGTACAAGGCCACAAA 60.740 43.478 5.01 0.00 0.00 2.83
3095 3859 2.223923 GCAAACATGTACAAGGCCACAA 60.224 45.455 5.01 0.00 0.00 3.33
3096 3860 1.339610 GCAAACATGTACAAGGCCACA 59.660 47.619 5.01 0.00 0.00 4.17
3097 3861 1.613437 AGCAAACATGTACAAGGCCAC 59.387 47.619 5.01 0.00 0.00 5.01
3098 3862 1.612950 CAGCAAACATGTACAAGGCCA 59.387 47.619 5.01 0.00 0.00 5.36
3099 3863 1.885887 TCAGCAAACATGTACAAGGCC 59.114 47.619 0.00 0.00 0.00 5.19
3100 3864 3.308530 GTTCAGCAAACATGTACAAGGC 58.691 45.455 0.00 0.00 37.82 4.35
3101 3865 3.569701 AGGTTCAGCAAACATGTACAAGG 59.430 43.478 0.00 0.00 39.81 3.61
3102 3866 4.611355 CGAGGTTCAGCAAACATGTACAAG 60.611 45.833 0.00 0.00 39.81 3.16
3103 3867 3.249799 CGAGGTTCAGCAAACATGTACAA 59.750 43.478 0.00 0.00 39.81 2.41
3104 3868 2.805671 CGAGGTTCAGCAAACATGTACA 59.194 45.455 0.00 0.00 39.81 2.90
3105 3869 2.159627 CCGAGGTTCAGCAAACATGTAC 59.840 50.000 0.00 0.00 39.81 2.90
3106 3870 2.422597 CCGAGGTTCAGCAAACATGTA 58.577 47.619 0.00 0.00 39.81 2.29
3107 3871 1.238439 CCGAGGTTCAGCAAACATGT 58.762 50.000 0.00 0.00 39.81 3.21
3108 3872 0.109597 GCCGAGGTTCAGCAAACATG 60.110 55.000 4.63 0.00 39.81 3.21
3109 3873 0.537143 TGCCGAGGTTCAGCAAACAT 60.537 50.000 4.63 0.00 39.81 2.71
3110 3874 0.749818 TTGCCGAGGTTCAGCAAACA 60.750 50.000 4.63 0.00 43.14 2.83
3111 3875 2.029743 TTGCCGAGGTTCAGCAAAC 58.970 52.632 0.00 0.00 43.14 2.93
3112 3876 4.569279 TTGCCGAGGTTCAGCAAA 57.431 50.000 0.00 0.00 43.14 3.68
3114 3878 0.036732 AAGATTGCCGAGGTTCAGCA 59.963 50.000 0.00 0.00 33.97 4.41
3115 3879 1.168714 AAAGATTGCCGAGGTTCAGC 58.831 50.000 0.00 0.00 0.00 4.26
3116 3880 3.568538 CAAAAAGATTGCCGAGGTTCAG 58.431 45.455 0.00 0.00 0.00 3.02
3117 3881 2.288152 GCAAAAAGATTGCCGAGGTTCA 60.288 45.455 1.80 0.00 39.38 3.18
3118 3882 2.328473 GCAAAAAGATTGCCGAGGTTC 58.672 47.619 1.80 0.00 39.38 3.62
3119 3883 2.438868 GCAAAAAGATTGCCGAGGTT 57.561 45.000 1.80 0.00 39.38 3.50
3149 3913 6.744112 ACTGAGTGAAATTCCGCAATAAAAA 58.256 32.000 0.00 0.00 0.00 1.94
3150 3914 6.016693 TGACTGAGTGAAATTCCGCAATAAAA 60.017 34.615 0.00 0.00 0.00 1.52
3151 3915 5.471797 TGACTGAGTGAAATTCCGCAATAAA 59.528 36.000 0.00 0.00 0.00 1.40
3152 3916 5.000591 TGACTGAGTGAAATTCCGCAATAA 58.999 37.500 0.00 0.00 0.00 1.40
3153 3917 4.391830 GTGACTGAGTGAAATTCCGCAATA 59.608 41.667 0.00 0.00 0.00 1.90
3154 3918 3.189287 GTGACTGAGTGAAATTCCGCAAT 59.811 43.478 0.00 0.00 0.00 3.56
3155 3919 2.548057 GTGACTGAGTGAAATTCCGCAA 59.452 45.455 0.00 0.00 0.00 4.85
3156 3920 2.143122 GTGACTGAGTGAAATTCCGCA 58.857 47.619 0.00 0.00 0.00 5.69
3157 3921 1.126846 CGTGACTGAGTGAAATTCCGC 59.873 52.381 0.00 0.00 0.00 5.54
3158 3922 2.404215 ACGTGACTGAGTGAAATTCCG 58.596 47.619 0.00 0.00 0.00 4.30
3159 3923 3.654414 AGACGTGACTGAGTGAAATTCC 58.346 45.455 0.00 0.00 0.00 3.01
3160 3924 5.220303 GCATAGACGTGACTGAGTGAAATTC 60.220 44.000 0.00 0.00 0.00 2.17
3161 3925 4.627467 GCATAGACGTGACTGAGTGAAATT 59.373 41.667 0.00 0.00 0.00 1.82
3162 3926 4.177026 GCATAGACGTGACTGAGTGAAAT 58.823 43.478 0.00 0.00 0.00 2.17
3163 3927 3.575630 GCATAGACGTGACTGAGTGAAA 58.424 45.455 0.00 0.00 0.00 2.69
3164 3928 2.094700 GGCATAGACGTGACTGAGTGAA 60.095 50.000 0.00 0.00 0.00 3.18
3165 3929 1.472878 GGCATAGACGTGACTGAGTGA 59.527 52.381 0.00 0.00 0.00 3.41
3166 3930 1.202348 TGGCATAGACGTGACTGAGTG 59.798 52.381 0.00 0.00 0.00 3.51
3167 3931 1.545841 TGGCATAGACGTGACTGAGT 58.454 50.000 0.00 0.00 0.00 3.41
3168 3932 2.534298 CTTGGCATAGACGTGACTGAG 58.466 52.381 0.00 0.00 0.00 3.35
3169 3933 1.404181 GCTTGGCATAGACGTGACTGA 60.404 52.381 0.00 0.00 0.00 3.41
3170 3934 1.002366 GCTTGGCATAGACGTGACTG 58.998 55.000 0.00 0.00 0.00 3.51
3171 3935 0.608130 TGCTTGGCATAGACGTGACT 59.392 50.000 0.00 0.00 31.71 3.41
3172 3936 0.721718 GTGCTTGGCATAGACGTGAC 59.278 55.000 0.00 0.00 41.91 3.67
3173 3937 0.391130 GGTGCTTGGCATAGACGTGA 60.391 55.000 0.00 0.00 41.91 4.35
3174 3938 1.369091 GGGTGCTTGGCATAGACGTG 61.369 60.000 0.00 0.00 41.91 4.49
3175 3939 1.078426 GGGTGCTTGGCATAGACGT 60.078 57.895 0.00 0.00 41.91 4.34
3176 3940 0.464373 ATGGGTGCTTGGCATAGACG 60.464 55.000 0.00 0.00 41.91 4.18
3177 3941 1.027357 CATGGGTGCTTGGCATAGAC 58.973 55.000 0.00 0.00 41.91 2.59
3178 3942 0.918258 TCATGGGTGCTTGGCATAGA 59.082 50.000 0.00 0.00 41.91 1.98
3179 3943 1.766494 TTCATGGGTGCTTGGCATAG 58.234 50.000 0.00 0.00 41.91 2.23
3180 3944 2.228545 TTTCATGGGTGCTTGGCATA 57.771 45.000 0.00 0.00 41.91 3.14
3181 3945 1.002315 GTTTTCATGGGTGCTTGGCAT 59.998 47.619 0.00 0.00 41.91 4.40
3182 3946 0.392336 GTTTTCATGGGTGCTTGGCA 59.608 50.000 0.00 0.00 35.60 4.92
3183 3947 0.392336 TGTTTTCATGGGTGCTTGGC 59.608 50.000 0.00 0.00 0.00 4.52
3184 3948 3.405823 AATGTTTTCATGGGTGCTTGG 57.594 42.857 0.00 0.00 40.79 3.61
3185 3949 7.601886 TGTAATAAATGTTTTCATGGGTGCTTG 59.398 33.333 0.00 0.00 40.79 4.01
3186 3950 7.675062 TGTAATAAATGTTTTCATGGGTGCTT 58.325 30.769 0.00 0.00 40.79 3.91
3187 3951 7.178274 TCTGTAATAAATGTTTTCATGGGTGCT 59.822 33.333 0.00 0.00 40.79 4.40
3188 3952 7.319646 TCTGTAATAAATGTTTTCATGGGTGC 58.680 34.615 0.00 0.00 40.79 5.01
3189 3953 9.874205 ATTCTGTAATAAATGTTTTCATGGGTG 57.126 29.630 0.00 0.00 40.79 4.61
3198 3962 9.533831 ACTCCTGGAATTCTGTAATAAATGTTT 57.466 29.630 5.23 0.00 0.00 2.83
3199 3963 9.178758 GACTCCTGGAATTCTGTAATAAATGTT 57.821 33.333 5.23 0.00 0.00 2.71
3200 3964 8.328758 TGACTCCTGGAATTCTGTAATAAATGT 58.671 33.333 5.23 0.00 0.00 2.71
3201 3965 8.737168 TGACTCCTGGAATTCTGTAATAAATG 57.263 34.615 5.23 0.00 0.00 2.32
3202 3966 9.347240 CATGACTCCTGGAATTCTGTAATAAAT 57.653 33.333 5.23 0.00 0.00 1.40
3203 3967 8.328758 ACATGACTCCTGGAATTCTGTAATAAA 58.671 33.333 5.23 0.00 0.00 1.40
3204 3968 7.770433 CACATGACTCCTGGAATTCTGTAATAA 59.230 37.037 5.23 0.00 0.00 1.40
3205 3969 7.092891 ACACATGACTCCTGGAATTCTGTAATA 60.093 37.037 5.23 0.00 0.00 0.98
3206 3970 6.118170 CACATGACTCCTGGAATTCTGTAAT 58.882 40.000 5.23 0.00 0.00 1.89
3207 3971 5.013079 ACACATGACTCCTGGAATTCTGTAA 59.987 40.000 5.23 0.00 0.00 2.41
3208 3972 4.532126 ACACATGACTCCTGGAATTCTGTA 59.468 41.667 5.23 0.00 0.00 2.74
3209 3973 3.328931 ACACATGACTCCTGGAATTCTGT 59.671 43.478 5.23 0.00 0.00 3.41
3210 3974 3.937706 GACACATGACTCCTGGAATTCTG 59.062 47.826 5.23 0.00 0.00 3.02
3211 3975 3.843027 AGACACATGACTCCTGGAATTCT 59.157 43.478 5.23 0.00 0.00 2.40
3212 3976 3.937706 CAGACACATGACTCCTGGAATTC 59.062 47.826 0.00 0.00 0.00 2.17
3213 3977 3.871463 GCAGACACATGACTCCTGGAATT 60.871 47.826 0.00 0.00 0.00 2.17
3214 3978 2.355513 GCAGACACATGACTCCTGGAAT 60.356 50.000 0.00 0.00 0.00 3.01
3215 3979 1.002430 GCAGACACATGACTCCTGGAA 59.998 52.381 0.00 0.00 0.00 3.53
3216 3980 0.610174 GCAGACACATGACTCCTGGA 59.390 55.000 0.00 0.00 0.00 3.86
3217 3981 0.392193 GGCAGACACATGACTCCTGG 60.392 60.000 0.00 0.00 0.00 4.45
3218 3982 0.322648 TGGCAGACACATGACTCCTG 59.677 55.000 0.00 2.37 0.00 3.86
3219 3983 1.002888 CTTGGCAGACACATGACTCCT 59.997 52.381 0.00 0.00 0.00 3.69
3220 3984 1.446907 CTTGGCAGACACATGACTCC 58.553 55.000 0.00 1.31 0.00 3.85
3221 3985 0.801251 GCTTGGCAGACACATGACTC 59.199 55.000 0.00 0.00 0.00 3.36
3222 3986 0.109153 TGCTTGGCAGACACATGACT 59.891 50.000 0.00 0.00 33.32 3.41
3223 3987 0.239347 GTGCTTGGCAGACACATGAC 59.761 55.000 14.78 0.00 40.08 3.06
3224 3988 0.890542 GGTGCTTGGCAGACACATGA 60.891 55.000 19.47 0.00 40.08 3.07
3225 3989 1.582968 GGTGCTTGGCAGACACATG 59.417 57.895 19.47 0.00 40.08 3.21
3226 3990 1.604593 GGGTGCTTGGCAGACACAT 60.605 57.895 19.47 0.00 40.08 3.21
3227 3991 2.203337 GGGTGCTTGGCAGACACA 60.203 61.111 19.47 1.31 40.08 3.72
3228 3992 2.725203 TACGGGTGCTTGGCAGACAC 62.725 60.000 12.12 12.12 40.08 3.67
3229 3993 2.449031 CTACGGGTGCTTGGCAGACA 62.449 60.000 0.00 0.00 40.08 3.41
3230 3994 1.741770 CTACGGGTGCTTGGCAGAC 60.742 63.158 0.00 0.00 40.08 3.51
3231 3995 1.888436 CTCTACGGGTGCTTGGCAGA 61.888 60.000 0.00 0.00 40.08 4.26
3232 3996 1.448540 CTCTACGGGTGCTTGGCAG 60.449 63.158 0.00 0.00 40.08 4.85
3233 3997 1.264749 ATCTCTACGGGTGCTTGGCA 61.265 55.000 0.00 0.00 35.60 4.92
3234 3998 0.750850 TATCTCTACGGGTGCTTGGC 59.249 55.000 0.00 0.00 0.00 4.52
3235 3999 3.827302 AGTATATCTCTACGGGTGCTTGG 59.173 47.826 0.00 0.00 0.00 3.61
3236 4000 4.378563 CGAGTATATCTCTACGGGTGCTTG 60.379 50.000 0.00 0.00 40.75 4.01
3237 4001 3.752222 CGAGTATATCTCTACGGGTGCTT 59.248 47.826 0.00 0.00 40.75 3.91
3238 4002 3.336468 CGAGTATATCTCTACGGGTGCT 58.664 50.000 0.00 0.00 40.75 4.40
3239 4003 2.419324 CCGAGTATATCTCTACGGGTGC 59.581 54.545 0.00 0.00 40.75 5.01
3240 4004 2.419324 GCCGAGTATATCTCTACGGGTG 59.581 54.545 0.00 0.00 40.75 4.61
3241 4005 2.039480 TGCCGAGTATATCTCTACGGGT 59.961 50.000 0.00 0.00 40.75 5.28
3242 4006 2.708051 TGCCGAGTATATCTCTACGGG 58.292 52.381 0.00 0.00 40.75 5.28
3243 4007 4.023450 TGTTTGCCGAGTATATCTCTACGG 60.023 45.833 0.00 0.00 40.75 4.02
3244 4008 5.104562 TGTTTGCCGAGTATATCTCTACG 57.895 43.478 0.00 0.00 40.75 3.51
3245 4009 5.009811 ACCTGTTTGCCGAGTATATCTCTAC 59.990 44.000 0.00 0.00 40.75 2.59
3246 4010 5.138276 ACCTGTTTGCCGAGTATATCTCTA 58.862 41.667 0.00 0.00 40.75 2.43
3247 4011 3.961408 ACCTGTTTGCCGAGTATATCTCT 59.039 43.478 0.00 0.00 40.75 3.10
3248 4012 4.323553 ACCTGTTTGCCGAGTATATCTC 57.676 45.455 0.00 0.00 39.62 2.75
3249 4013 5.598769 GTTACCTGTTTGCCGAGTATATCT 58.401 41.667 0.00 0.00 0.00 1.98
3250 4014 4.443394 CGTTACCTGTTTGCCGAGTATATC 59.557 45.833 0.00 0.00 0.00 1.63
3251 4015 4.365723 CGTTACCTGTTTGCCGAGTATAT 58.634 43.478 0.00 0.00 0.00 0.86
3252 4016 3.429272 CCGTTACCTGTTTGCCGAGTATA 60.429 47.826 0.00 0.00 0.00 1.47
3253 4017 2.613691 CGTTACCTGTTTGCCGAGTAT 58.386 47.619 0.00 0.00 0.00 2.12
3254 4018 1.337074 CCGTTACCTGTTTGCCGAGTA 60.337 52.381 0.00 0.00 0.00 2.59
3255 4019 0.601841 CCGTTACCTGTTTGCCGAGT 60.602 55.000 0.00 0.00 0.00 4.18
3256 4020 1.296056 CCCGTTACCTGTTTGCCGAG 61.296 60.000 0.00 0.00 0.00 4.63
3257 4021 1.301874 CCCGTTACCTGTTTGCCGA 60.302 57.895 0.00 0.00 0.00 5.54
3258 4022 1.167781 AACCCGTTACCTGTTTGCCG 61.168 55.000 0.00 0.00 0.00 5.69
3259 4023 0.312729 CAACCCGTTACCTGTTTGCC 59.687 55.000 0.00 0.00 0.00 4.52
3260 4024 0.312729 CCAACCCGTTACCTGTTTGC 59.687 55.000 0.00 0.00 0.00 3.68
3261 4025 0.312729 GCCAACCCGTTACCTGTTTG 59.687 55.000 0.00 0.00 0.00 2.93
3262 4026 0.824595 GGCCAACCCGTTACCTGTTT 60.825 55.000 0.00 0.00 0.00 2.83
3263 4027 1.228337 GGCCAACCCGTTACCTGTT 60.228 57.895 0.00 0.00 0.00 3.16
3264 4028 2.433004 GGCCAACCCGTTACCTGT 59.567 61.111 0.00 0.00 0.00 4.00
3273 4037 4.572571 TGTCACACCGGCCAACCC 62.573 66.667 0.00 0.00 0.00 4.11
3274 4038 3.284449 GTGTCACACCGGCCAACC 61.284 66.667 0.00 0.00 0.00 3.77
3275 4039 2.974935 TACGTGTCACACCGGCCAAC 62.975 60.000 0.00 0.00 0.00 3.77
3276 4040 2.102109 ATACGTGTCACACCGGCCAA 62.102 55.000 0.00 0.00 0.00 4.52
3277 4041 2.495366 GATACGTGTCACACCGGCCA 62.495 60.000 7.51 0.00 0.00 5.36
3278 4042 1.808390 GATACGTGTCACACCGGCC 60.808 63.158 7.51 0.00 0.00 6.13
3279 4043 0.668096 TTGATACGTGTCACACCGGC 60.668 55.000 15.10 0.00 0.00 6.13
3280 4044 1.346365 CTTGATACGTGTCACACCGG 58.654 55.000 15.10 0.00 0.00 5.28
3281 4045 1.068125 TCCTTGATACGTGTCACACCG 60.068 52.381 15.10 4.12 0.00 4.94
3282 4046 2.029290 AGTCCTTGATACGTGTCACACC 60.029 50.000 15.10 3.71 0.00 4.16
3283 4047 3.299340 AGTCCTTGATACGTGTCACAC 57.701 47.619 15.10 11.50 0.00 3.82
3284 4048 4.521639 AGTTAGTCCTTGATACGTGTCACA 59.478 41.667 15.10 5.85 0.00 3.58
3285 4049 4.857588 CAGTTAGTCCTTGATACGTGTCAC 59.142 45.833 15.10 3.55 0.00 3.67
3286 4050 4.763279 TCAGTTAGTCCTTGATACGTGTCA 59.237 41.667 11.30 11.30 0.00 3.58
3287 4051 5.094134 GTCAGTTAGTCCTTGATACGTGTC 58.906 45.833 5.21 5.21 0.00 3.67
3288 4052 4.379186 CGTCAGTTAGTCCTTGATACGTGT 60.379 45.833 0.00 0.00 0.00 4.49
3289 4053 4.096311 CGTCAGTTAGTCCTTGATACGTG 58.904 47.826 0.00 0.00 0.00 4.49
3290 4054 3.128242 CCGTCAGTTAGTCCTTGATACGT 59.872 47.826 0.00 0.00 0.00 3.57
3291 4055 3.128242 ACCGTCAGTTAGTCCTTGATACG 59.872 47.826 0.00 0.00 0.00 3.06
3292 4056 4.715527 ACCGTCAGTTAGTCCTTGATAC 57.284 45.455 0.00 0.00 0.00 2.24
3293 4057 4.081862 CCAACCGTCAGTTAGTCCTTGATA 60.082 45.833 0.00 0.00 36.18 2.15
3294 4058 3.306780 CCAACCGTCAGTTAGTCCTTGAT 60.307 47.826 0.00 0.00 36.18 2.57
3295 4059 2.036733 CCAACCGTCAGTTAGTCCTTGA 59.963 50.000 0.00 0.00 36.18 3.02
3296 4060 2.413837 CCAACCGTCAGTTAGTCCTTG 58.586 52.381 0.00 0.00 36.18 3.61
3297 4061 1.346722 CCCAACCGTCAGTTAGTCCTT 59.653 52.381 0.00 0.00 36.18 3.36
3298 4062 0.974383 CCCAACCGTCAGTTAGTCCT 59.026 55.000 0.00 0.00 36.18 3.85
3299 4063 0.672711 GCCCAACCGTCAGTTAGTCC 60.673 60.000 0.00 0.00 36.18 3.85
3300 4064 0.320697 AGCCCAACCGTCAGTTAGTC 59.679 55.000 0.00 0.00 36.18 2.59
3301 4065 0.763035 AAGCCCAACCGTCAGTTAGT 59.237 50.000 0.00 0.00 36.18 2.24
3302 4066 1.439679 GAAGCCCAACCGTCAGTTAG 58.560 55.000 0.00 0.00 36.18 2.34
3303 4067 0.035739 GGAAGCCCAACCGTCAGTTA 59.964 55.000 0.00 0.00 36.18 2.24
3304 4068 1.228154 GGAAGCCCAACCGTCAGTT 60.228 57.895 0.00 0.00 40.16 3.16
3305 4069 0.834687 TAGGAAGCCCAACCGTCAGT 60.835 55.000 0.00 0.00 33.88 3.41
3306 4070 0.541863 ATAGGAAGCCCAACCGTCAG 59.458 55.000 0.00 0.00 33.88 3.51
3307 4071 0.251916 CATAGGAAGCCCAACCGTCA 59.748 55.000 0.00 0.00 33.88 4.35
3308 4072 1.095807 GCATAGGAAGCCCAACCGTC 61.096 60.000 0.00 0.00 33.88 4.79
3309 4073 1.077716 GCATAGGAAGCCCAACCGT 60.078 57.895 0.00 0.00 33.88 4.83
3310 4074 1.823899 GGCATAGGAAGCCCAACCG 60.824 63.158 0.00 0.00 46.50 4.44
3311 4075 4.259952 GGCATAGGAAGCCCAACC 57.740 61.111 0.00 0.00 46.50 3.77
3317 4081 0.178068 TGGAACTCGGCATAGGAAGC 59.822 55.000 0.00 0.00 0.00 3.86
3318 4082 2.918712 ATGGAACTCGGCATAGGAAG 57.081 50.000 0.00 0.00 0.00 3.46
3319 4083 3.709653 AGTTATGGAACTCGGCATAGGAA 59.290 43.478 0.00 0.00 42.50 3.36
3320 4084 3.305720 AGTTATGGAACTCGGCATAGGA 58.694 45.455 0.00 0.00 42.50 2.94
3321 4085 3.753294 AGTTATGGAACTCGGCATAGG 57.247 47.619 0.00 0.00 42.50 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.