Multiple sequence alignment - TraesCS3D01G144500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G144500 chr3D 100.000 3024 0 0 1 3024 107683094 107680071 0.000000e+00 5585.0
1 TraesCS3D01G144500 chr3D 100.000 2284 0 0 3332 5615 107679763 107677480 0.000000e+00 4218.0
2 TraesCS3D01G144500 chr3D 96.970 66 2 0 2858 2923 107680172 107680237 1.650000e-20 111.0
3 TraesCS3D01G144500 chr3D 92.308 52 3 1 3555 3606 532957436 532957486 7.800000e-09 73.1
4 TraesCS3D01G144500 chr3B 90.689 1987 71 32 1 1903 158720202 158718246 0.000000e+00 2540.0
5 TraesCS3D01G144500 chr3B 89.600 1250 59 33 3708 4921 158716549 158715335 0.000000e+00 1522.0
6 TraesCS3D01G144500 chr3B 85.190 736 76 21 2132 2859 158718076 158717366 0.000000e+00 725.0
7 TraesCS3D01G144500 chr3B 90.461 304 29 0 3381 3684 158716846 158716543 8.760000e-108 401.0
8 TraesCS3D01G144500 chr3B 81.988 322 51 4 5295 5614 158714832 158714516 3.330000e-67 267.0
9 TraesCS3D01G144500 chr3B 100.000 59 0 0 2923 2981 158717364 158717306 5.950000e-20 110.0
10 TraesCS3D01G144500 chr3B 87.931 58 4 3 3558 3614 10759864 10759919 1.310000e-06 65.8
11 TraesCS3D01G144500 chr3B 96.774 31 1 0 1970 2000 814522943 814522913 1.000000e-02 52.8
12 TraesCS3D01G144500 chr3A 82.717 920 62 55 4084 4929 124176092 124176988 0.000000e+00 728.0
13 TraesCS3D01G144500 chr3A 79.474 989 66 63 625 1508 124172294 124173250 4.880000e-160 575.0
14 TraesCS3D01G144500 chr7B 85.253 217 32 0 4258 4474 9703511 9703727 2.040000e-54 224.0
15 TraesCS3D01G144500 chr7D 84.793 217 33 0 4258 4474 68416731 68416515 9.470000e-53 219.0
16 TraesCS3D01G144500 chr7A 84.793 217 33 0 4258 4474 71670662 71670878 9.470000e-53 219.0
17 TraesCS3D01G144500 chr7A 92.647 68 3 2 2856 2922 735744230 735744296 4.630000e-16 97.1
18 TraesCS3D01G144500 chr7A 92.647 68 3 2 2856 2922 735777127 735777193 4.630000e-16 97.1
19 TraesCS3D01G144500 chr7A 92.537 67 4 1 2859 2925 735744296 735744231 1.670000e-15 95.3
20 TraesCS3D01G144500 chr7A 92.537 67 4 1 2859 2925 735777193 735777128 1.670000e-15 95.3
21 TraesCS3D01G144500 chr7A 90.411 73 4 3 2856 2928 679878095 679878164 5.990000e-15 93.5
22 TraesCS3D01G144500 chr7A 83.838 99 11 5 2017 2112 679894486 679894582 7.750000e-14 89.8
23 TraesCS3D01G144500 chr4A 87.912 91 9 2 2017 2106 567678256 567678345 7.690000e-19 106.0
24 TraesCS3D01G144500 chr4A 95.652 46 2 0 1975 2020 569888526 569888571 2.170000e-09 75.0
25 TraesCS3D01G144500 chr2B 91.781 73 6 0 2030 2102 139078920 139078992 9.950000e-18 102.0
26 TraesCS3D01G144500 chr2B 89.041 73 8 0 2859 2931 693327328 693327256 2.150000e-14 91.6
27 TraesCS3D01G144500 chr2B 100.000 32 0 0 2071 2102 587169355 587169386 6.080000e-05 60.2
28 TraesCS3D01G144500 chr1B 95.385 65 2 1 2859 2922 624981682 624981746 9.950000e-18 102.0
29 TraesCS3D01G144500 chr1B 89.610 77 8 0 2856 2932 24605013 24605089 1.290000e-16 99.0
30 TraesCS3D01G144500 chr5D 87.879 66 7 1 3555 3620 419011707 419011771 6.030000e-10 76.8
31 TraesCS3D01G144500 chr5D 91.071 56 2 3 2033 2086 369035577 369035631 7.800000e-09 73.1
32 TraesCS3D01G144500 chr5D 90.566 53 3 2 3558 3609 228558829 228558880 1.010000e-07 69.4
33 TraesCS3D01G144500 chr4D 95.652 46 2 0 1975 2020 32492809 32492764 2.170000e-09 75.0
34 TraesCS3D01G144500 chr4B 95.652 46 2 0 1975 2020 47446351 47446306 2.170000e-09 75.0
35 TraesCS3D01G144500 chr2A 93.750 48 2 1 3558 3605 695141817 695141771 2.810000e-08 71.3
36 TraesCS3D01G144500 chr2A 90.566 53 2 3 3558 3609 720286357 720286307 3.630000e-07 67.6
37 TraesCS3D01G144500 chr2A 96.875 32 1 0 2071 2102 767566381 767566350 3.000000e-03 54.7
38 TraesCS3D01G144500 chr5A 89.091 55 6 0 535 589 550657240 550657186 1.010000e-07 69.4
39 TraesCS3D01G144500 chr2D 89.091 55 4 2 3552 3606 7951722 7951774 3.630000e-07 67.6
40 TraesCS3D01G144500 chr1D 86.885 61 4 4 3552 3609 457583962 457583903 1.310000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G144500 chr3D 107677480 107683094 5614 True 4901.5 5585 100.000000 1 5615 2 chr3D.!!$R1 5614
1 TraesCS3D01G144500 chr3B 158714516 158720202 5686 True 927.5 2540 89.654667 1 5614 6 chr3B.!!$R2 5613
2 TraesCS3D01G144500 chr3A 124172294 124176988 4694 False 651.5 728 81.095500 625 4929 2 chr3A.!!$F1 4304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 425 0.111639 TGGTTAGGTTCCTTGTGGGC 59.888 55.0 0.0 0.0 34.39 5.36 F
1404 1539 0.028637 GCGCTCCTGCTTAATTGCTC 59.971 55.0 0.0 0.0 36.97 4.26 F
1806 2389 0.034186 GAATGGCCCACTCATCACCA 60.034 55.0 0.0 0.0 34.28 4.17 F
2409 3106 0.310543 AAACATCAACACGCACGCAT 59.689 45.0 0.0 0.0 0.00 4.73 F
2821 3857 1.149964 GCATGTACCGTTAGCCCGTC 61.150 60.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 3018 0.249615 TAGATGCGCCTCTCATGCAC 60.250 55.000 18.89 0.0 42.11 4.57 R
2389 3072 0.938008 TGCGTGCGTGTTGATGTTTA 59.062 45.000 0.00 0.0 0.00 2.01 R
2713 3747 1.593196 TGTGCTTCGCTTGCTTTAGT 58.407 45.000 0.00 0.0 0.00 2.24 R
3904 5154 1.626686 CCACCCTGGCAAATTACACA 58.373 50.000 0.00 0.0 0.00 3.72 R
4626 6004 1.001633 TCTTTGCGGTTCAGGAGTACC 59.998 52.381 0.00 0.0 32.30 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.404426 ACCAGAGTGGGGGCTTTTAC 59.596 55.000 0.00 0.00 43.37 2.01
65 66 0.536460 AAATTCAAGGTCGCACGGGT 60.536 50.000 0.00 0.00 0.00 5.28
141 142 9.185680 GTGTATTACCCCACTCAGAATTTAAAT 57.814 33.333 0.00 0.00 0.00 1.40
142 143 9.762381 TGTATTACCCCACTCAGAATTTAAATT 57.238 29.630 13.24 13.24 0.00 1.82
352 355 4.150897 ACAACTGTTAAGAGCTCAACCA 57.849 40.909 17.77 5.89 0.00 3.67
383 386 7.524717 AGCTAATCAATTTAGTTTGTGGTGT 57.475 32.000 0.00 0.00 39.67 4.16
392 395 3.627395 AGTTTGTGGTGTGAACTGAGA 57.373 42.857 0.00 0.00 32.73 3.27
413 416 4.957327 AGAGTAGTCCTGATGGTTAGGTTC 59.043 45.833 0.00 0.00 36.67 3.62
422 425 0.111639 TGGTTAGGTTCCTTGTGGGC 59.888 55.000 0.00 0.00 34.39 5.36
452 455 4.638421 CCTCGGAGGTGCTTATAGAGATAG 59.362 50.000 16.15 0.00 0.00 2.08
457 460 5.326069 GAGGTGCTTATAGAGATAGGGTGA 58.674 45.833 0.00 0.00 0.00 4.02
492 495 6.491745 TGTTTTTAGGGATGAGTGCACAATTA 59.508 34.615 21.04 2.00 0.00 1.40
596 599 7.492524 TCGAGTCAATACAAAGCATAGAGAAT 58.507 34.615 0.00 0.00 0.00 2.40
597 600 8.630037 TCGAGTCAATACAAAGCATAGAGAATA 58.370 33.333 0.00 0.00 0.00 1.75
599 602 8.581057 AGTCAATACAAAGCATAGAGAATACG 57.419 34.615 0.00 0.00 0.00 3.06
723 740 1.006813 ATAGGCCATTTGACCCACCA 58.993 50.000 5.01 0.00 0.00 4.17
940 1017 1.545582 GCTAGCTAGCCCAGAGATCTG 59.454 57.143 31.67 2.72 43.39 2.90
973 1053 3.825585 CCCCCTCTTCTATAAGTACGTCC 59.174 52.174 0.00 0.00 34.13 4.79
991 1071 4.664677 GCTCGTCGTGGTGCAGGT 62.665 66.667 0.00 0.00 0.00 4.00
1011 1091 2.972505 AGCAGCAACAACGACGGG 60.973 61.111 0.00 0.00 0.00 5.28
1071 1162 2.032860 TAGAGCTGGCCGCCTTCATC 62.033 60.000 11.61 3.83 40.39 2.92
1115 1206 4.821589 CGGCGGAGAAGGACCAGC 62.822 72.222 0.00 0.00 0.00 4.85
1361 1466 3.550974 ACGCTGGTGAGTTCCACT 58.449 55.556 0.00 0.00 45.03 4.00
1362 1467 1.367840 ACGCTGGTGAGTTCCACTC 59.632 57.895 0.00 0.00 45.26 3.51
1367 1502 1.292541 GGTGAGTTCCACTCCGTCC 59.707 63.158 1.46 0.00 44.44 4.79
1397 1532 4.854784 CTCGCGCGCTCCTGCTTA 62.855 66.667 30.48 2.86 36.97 3.09
1399 1534 3.264897 CGCGCGCTCCTGCTTAAT 61.265 61.111 30.48 0.00 36.97 1.40
1401 1536 1.297893 GCGCGCTCCTGCTTAATTG 60.298 57.895 26.67 0.00 36.97 2.32
1403 1538 1.709147 CGCGCTCCTGCTTAATTGCT 61.709 55.000 5.56 0.00 36.97 3.91
1404 1539 0.028637 GCGCTCCTGCTTAATTGCTC 59.971 55.000 0.00 0.00 36.97 4.26
1405 1540 0.659957 CGCTCCTGCTTAATTGCTCC 59.340 55.000 0.00 0.00 36.97 4.70
1406 1541 1.745141 CGCTCCTGCTTAATTGCTCCT 60.745 52.381 0.00 0.00 36.97 3.69
1407 1542 1.946081 GCTCCTGCTTAATTGCTCCTC 59.054 52.381 0.00 0.00 36.03 3.71
1408 1543 2.570135 CTCCTGCTTAATTGCTCCTCC 58.430 52.381 0.00 0.00 0.00 4.30
1409 1544 1.212935 TCCTGCTTAATTGCTCCTCCC 59.787 52.381 0.00 0.00 0.00 4.30
1410 1545 1.064463 CCTGCTTAATTGCTCCTCCCA 60.064 52.381 0.00 0.00 0.00 4.37
1411 1546 2.295885 CTGCTTAATTGCTCCTCCCAG 58.704 52.381 0.00 0.00 0.00 4.45
1429 1564 6.411086 CCTCCCAGTCCTAGATTACTTACTCT 60.411 46.154 0.00 0.00 0.00 3.24
1563 1715 7.344612 ACAAAACAAAAGATTTCCCTCCTACTT 59.655 33.333 0.00 0.00 0.00 2.24
1568 1742 4.920781 AGATTTCCCTCCTACTTCCCTA 57.079 45.455 0.00 0.00 0.00 3.53
1572 1746 2.798103 TCCCTCCTACTTCCCTAGCTA 58.202 52.381 0.00 0.00 0.00 3.32
1606 1780 2.439553 ATCCCCACCAACATGCCGTT 62.440 55.000 0.00 0.00 38.83 4.44
1608 1782 2.635443 CCCACCAACATGCCGTTCC 61.635 63.158 0.00 0.00 34.86 3.62
1622 1796 1.602771 GTTCCCCTGACCTAGCACC 59.397 63.158 0.00 0.00 0.00 5.01
1623 1797 1.159905 TTCCCCTGACCTAGCACCA 59.840 57.895 0.00 0.00 0.00 4.17
1683 2250 4.697352 CCCAGGCAGATATTTGTATACAGC 59.303 45.833 5.56 4.19 0.00 4.40
1688 2255 5.409826 GGCAGATATTTGTATACAGCTGACC 59.590 44.000 23.35 5.24 0.00 4.02
1712 2279 2.625314 GCCAAATAGGATCTTTCAGCCC 59.375 50.000 0.00 0.00 41.22 5.19
1740 2318 3.181454 GCCTTCGAAGGGATTAATGAGGA 60.181 47.826 38.28 0.00 46.56 3.71
1741 2319 4.505742 GCCTTCGAAGGGATTAATGAGGAT 60.506 45.833 38.28 0.00 46.56 3.24
1742 2320 5.280011 GCCTTCGAAGGGATTAATGAGGATA 60.280 44.000 38.28 0.00 46.56 2.59
1743 2321 6.402222 CCTTCGAAGGGATTAATGAGGATAG 58.598 44.000 32.76 4.18 42.66 2.08
1744 2322 5.407407 TCGAAGGGATTAATGAGGATAGC 57.593 43.478 0.00 0.00 0.00 2.97
1745 2323 5.087323 TCGAAGGGATTAATGAGGATAGCT 58.913 41.667 0.00 0.00 0.00 3.32
1746 2324 5.186021 TCGAAGGGATTAATGAGGATAGCTC 59.814 44.000 0.00 0.00 0.00 4.09
1747 2325 5.047021 CGAAGGGATTAATGAGGATAGCTCA 60.047 44.000 0.00 0.00 35.13 4.26
1779 2362 0.606096 CGTGGTGTGGTGGAGACATA 59.394 55.000 0.00 0.00 46.14 2.29
1785 2368 3.403038 GTGTGGTGGAGACATATATGGC 58.597 50.000 16.96 14.18 46.14 4.40
1801 2384 1.076485 GGCTGAATGGCCCACTCAT 60.076 57.895 0.00 0.00 45.92 2.90
1806 2389 0.034186 GAATGGCCCACTCATCACCA 60.034 55.000 0.00 0.00 34.28 4.17
1807 2390 0.323725 AATGGCCCACTCATCACCAC 60.324 55.000 0.00 0.00 32.13 4.16
1808 2391 2.044946 GGCCCACTCATCACCACC 60.045 66.667 0.00 0.00 0.00 4.61
1832 2423 5.214417 TGAGTTCAATCAAATTCTTGTGCG 58.786 37.500 0.00 0.00 33.94 5.34
1849 2440 3.264845 GCCCAACCTCCCCTCCAA 61.265 66.667 0.00 0.00 0.00 3.53
1850 2441 2.763902 CCCAACCTCCCCTCCAAC 59.236 66.667 0.00 0.00 0.00 3.77
1851 2442 1.852626 CCCAACCTCCCCTCCAACT 60.853 63.158 0.00 0.00 0.00 3.16
1852 2443 1.685820 CCAACCTCCCCTCCAACTC 59.314 63.158 0.00 0.00 0.00 3.01
1853 2444 1.133809 CCAACCTCCCCTCCAACTCA 61.134 60.000 0.00 0.00 0.00 3.41
1854 2445 0.771127 CAACCTCCCCTCCAACTCAA 59.229 55.000 0.00 0.00 0.00 3.02
1855 2446 1.144913 CAACCTCCCCTCCAACTCAAA 59.855 52.381 0.00 0.00 0.00 2.69
1890 2481 3.883669 AGGGCTCTAGCAGATTTCAAAG 58.116 45.455 4.07 0.00 44.36 2.77
1904 2495 7.386025 GCAGATTTCAAAGCCAAAGATAAAAGT 59.614 33.333 0.00 0.00 0.00 2.66
1905 2496 8.706035 CAGATTTCAAAGCCAAAGATAAAAGTG 58.294 33.333 0.00 0.00 0.00 3.16
1906 2497 6.843069 TTTCAAAGCCAAAGATAAAAGTGC 57.157 33.333 0.00 0.00 0.00 4.40
1949 2627 4.156556 AGCTTCTTGATTTTATGCGCAGAA 59.843 37.500 18.32 16.34 0.00 3.02
1950 2628 4.263911 GCTTCTTGATTTTATGCGCAGAAC 59.736 41.667 18.44 6.94 0.00 3.01
1951 2629 5.369685 TTCTTGATTTTATGCGCAGAACA 57.630 34.783 18.44 12.07 0.00 3.18
1959 2637 6.926280 TTTTATGCGCAGAACAACTAAATG 57.074 33.333 18.44 0.00 0.00 2.32
1961 2639 4.970662 ATGCGCAGAACAACTAAATGAT 57.029 36.364 18.32 0.00 0.00 2.45
1963 2641 5.216566 TGCGCAGAACAACTAAATGATAC 57.783 39.130 5.66 0.00 0.00 2.24
1965 2643 5.022021 GCGCAGAACAACTAAATGATACAC 58.978 41.667 0.30 0.00 0.00 2.90
1988 2666 8.603304 ACACAAATAAGTAAATACTCCCTCTGT 58.397 33.333 0.00 0.00 34.99 3.41
1997 2675 9.449719 AGTAAATACTCCCTCTGTAAACAAATG 57.550 33.333 0.00 0.00 0.00 2.32
1998 2676 9.227777 GTAAATACTCCCTCTGTAAACAAATGT 57.772 33.333 0.00 0.00 0.00 2.71
2000 2678 9.975218 AAATACTCCCTCTGTAAACAAATGTAT 57.025 29.630 0.00 0.00 0.00 2.29
2001 2679 8.964476 ATACTCCCTCTGTAAACAAATGTATG 57.036 34.615 0.00 0.00 0.00 2.39
2002 2680 7.016153 ACTCCCTCTGTAAACAAATGTATGA 57.984 36.000 0.00 0.00 0.00 2.15
2003 2681 6.879458 ACTCCCTCTGTAAACAAATGTATGAC 59.121 38.462 0.00 0.00 0.00 3.06
2004 2682 6.774673 TCCCTCTGTAAACAAATGTATGACA 58.225 36.000 0.00 0.00 0.00 3.58
2005 2683 7.402054 TCCCTCTGTAAACAAATGTATGACAT 58.598 34.615 0.00 0.00 41.31 3.06
2021 2699 8.648557 TGTATGACATTTTAGATCACTACTGC 57.351 34.615 0.00 0.00 0.00 4.40
2022 2700 7.710907 TGTATGACATTTTAGATCACTACTGCC 59.289 37.037 0.00 0.00 0.00 4.85
2023 2701 5.428253 TGACATTTTAGATCACTACTGCCC 58.572 41.667 0.00 0.00 0.00 5.36
2024 2702 4.781934 ACATTTTAGATCACTACTGCCCC 58.218 43.478 0.00 0.00 0.00 5.80
2025 2703 3.926058 TTTTAGATCACTACTGCCCCC 57.074 47.619 0.00 0.00 0.00 5.40
2046 2724 7.634671 CCCCCTAAACAAAATATAAGACGTT 57.365 36.000 0.00 0.00 0.00 3.99
2047 2725 8.058667 CCCCCTAAACAAAATATAAGACGTTT 57.941 34.615 0.00 0.00 0.00 3.60
2048 2726 8.525316 CCCCCTAAACAAAATATAAGACGTTTT 58.475 33.333 0.00 0.00 0.00 2.43
2049 2727 9.917129 CCCCTAAACAAAATATAAGACGTTTTT 57.083 29.630 0.00 0.00 0.00 1.94
2095 2773 9.498307 AAAAACGTCTTACATTTGTTTACAGAG 57.502 29.630 0.00 0.00 32.84 3.35
2096 2774 6.780706 ACGTCTTACATTTGTTTACAGAGG 57.219 37.500 0.00 0.00 0.00 3.69
2097 2775 6.285990 ACGTCTTACATTTGTTTACAGAGGT 58.714 36.000 0.00 0.00 0.00 3.85
2098 2776 7.436118 ACGTCTTACATTTGTTTACAGAGGTA 58.564 34.615 0.00 0.00 0.00 3.08
2099 2777 7.597743 ACGTCTTACATTTGTTTACAGAGGTAG 59.402 37.037 0.00 0.00 30.81 3.18
2100 2778 7.597743 CGTCTTACATTTGTTTACAGAGGTAGT 59.402 37.037 0.00 0.00 30.81 2.73
2101 2779 9.918630 GTCTTACATTTGTTTACAGAGGTAGTA 57.081 33.333 0.00 0.00 30.81 1.82
2111 2789 9.953565 TGTTTACAGAGGTAGTAATTAAATGCT 57.046 29.630 0.00 0.00 32.07 3.79
2116 2794 8.769359 ACAGAGGTAGTAATTAAATGCTAAGGT 58.231 33.333 0.00 0.00 0.00 3.50
2164 2842 6.532657 TGCATGATGCTAGATTGACATATACG 59.467 38.462 19.19 0.00 45.31 3.06
2165 2843 6.533012 GCATGATGCTAGATTGACATATACGT 59.467 38.462 10.72 0.00 40.96 3.57
2166 2844 7.702348 GCATGATGCTAGATTGACATATACGTA 59.298 37.037 10.72 0.00 40.96 3.57
2167 2845 9.014533 CATGATGCTAGATTGACATATACGTAC 57.985 37.037 0.00 0.00 0.00 3.67
2177 2855 8.867112 ATTGACATATACGTACAGTTTAGTGG 57.133 34.615 0.00 0.00 0.00 4.00
2179 2857 7.475015 TGACATATACGTACAGTTTAGTGGTC 58.525 38.462 0.00 0.00 0.00 4.02
2191 2869 1.656587 TAGTGGTCAGGGAATGCACT 58.343 50.000 0.00 0.00 36.54 4.40
2224 2902 7.663905 TGCCCAATAATACGATTAAGCAACTAT 59.336 33.333 0.00 0.00 0.00 2.12
2225 2903 9.158233 GCCCAATAATACGATTAAGCAACTATA 57.842 33.333 0.00 0.00 0.00 1.31
2270 2948 7.015226 TGTATGCTTTTAAATCATCTCACCG 57.985 36.000 0.00 0.00 0.00 4.94
2284 2962 6.796426 TCATCTCACCGATTAGTAACTTCAG 58.204 40.000 0.00 0.00 0.00 3.02
2340 3018 7.323420 TCATCAAAGCATATTATCTAGACCCG 58.677 38.462 0.00 0.00 0.00 5.28
2347 3025 5.624509 GCATATTATCTAGACCCGTGCATGA 60.625 44.000 7.72 0.00 0.00 3.07
2349 3027 2.073252 ATCTAGACCCGTGCATGAGA 57.927 50.000 7.72 1.80 0.00 3.27
2357 3040 2.879070 CGTGCATGAGAGGCGCATC 61.879 63.158 15.45 15.45 41.69 3.91
2375 3058 5.360591 CGCATCTACTTAGGAGTGGAAAAT 58.639 41.667 0.00 0.00 45.03 1.82
2406 3103 5.553692 AAAAATAAACATCAACACGCACG 57.446 34.783 0.00 0.00 0.00 5.34
2409 3106 0.310543 AAACATCAACACGCACGCAT 59.689 45.000 0.00 0.00 0.00 4.73
2421 3118 3.294908 CACGCATGCACACATACAC 57.705 52.632 19.57 0.00 33.67 2.90
2435 3132 6.205464 GCACACATACACCTATTCTAATGCAT 59.795 38.462 0.00 0.00 0.00 3.96
2440 3137 9.003658 ACATACACCTATTCTAATGCATAAAGC 57.996 33.333 0.00 0.00 45.96 3.51
2498 3529 9.683069 CAAGGCATACCAAATTACTATGAAATC 57.317 33.333 0.00 0.00 39.06 2.17
2530 3562 7.584108 TGTTTGCATTGTACAACTAGAATCAG 58.416 34.615 11.22 0.00 0.00 2.90
2544 3576 7.372260 ACTAGAATCAGACTGAAATAGCCAT 57.628 36.000 9.70 0.00 0.00 4.40
2601 3633 9.926158 CATATTATGGGTTTATATTTGCTTGCA 57.074 29.630 0.00 0.00 0.00 4.08
2648 3681 5.293079 TGCAACAATTTAACAAGGACAAAGC 59.707 36.000 0.00 0.00 0.00 3.51
2651 3684 7.096065 GCAACAATTTAACAAGGACAAAGCTAG 60.096 37.037 0.00 0.00 0.00 3.42
2701 3735 9.944376 ATTCATTGCTAAGTTTACTAGAACTCA 57.056 29.630 0.00 0.00 38.86 3.41
2702 3736 9.772973 TTCATTGCTAAGTTTACTAGAACTCAA 57.227 29.630 0.00 0.00 38.86 3.02
2703 3737 9.204570 TCATTGCTAAGTTTACTAGAACTCAAC 57.795 33.333 0.00 0.00 38.86 3.18
2704 3738 9.209175 CATTGCTAAGTTTACTAGAACTCAACT 57.791 33.333 0.00 0.00 38.86 3.16
2706 3740 8.813643 TGCTAAGTTTACTAGAACTCAACTTC 57.186 34.615 0.00 0.00 38.86 3.01
2707 3741 7.871463 TGCTAAGTTTACTAGAACTCAACTTCC 59.129 37.037 0.00 0.45 38.86 3.46
2709 3743 9.760077 CTAAGTTTACTAGAACTCAACTTCCAA 57.240 33.333 0.00 0.00 38.86 3.53
2711 3745 8.608844 AGTTTACTAGAACTCAACTTCCAATG 57.391 34.615 0.00 0.00 34.94 2.82
2712 3746 8.429641 AGTTTACTAGAACTCAACTTCCAATGA 58.570 33.333 0.00 0.00 34.94 2.57
2713 3747 9.052759 GTTTACTAGAACTCAACTTCCAATGAA 57.947 33.333 0.00 0.00 0.00 2.57
2714 3748 8.603242 TTACTAGAACTCAACTTCCAATGAAC 57.397 34.615 0.00 0.00 0.00 3.18
2770 3804 4.640771 TGAAAGGTTGGAGTTGCTAGAT 57.359 40.909 0.00 0.00 0.00 1.98
2816 3852 3.458189 AGAAGATGCATGTACCGTTAGC 58.542 45.455 2.46 0.00 0.00 3.09
2821 3857 1.149964 GCATGTACCGTTAGCCCGTC 61.150 60.000 0.00 0.00 0.00 4.79
2835 3871 3.482436 AGCCCGTCACTGATAAAACAAA 58.518 40.909 0.00 0.00 0.00 2.83
2836 3872 3.886505 AGCCCGTCACTGATAAAACAAAA 59.113 39.130 0.00 0.00 0.00 2.44
2837 3873 4.522789 AGCCCGTCACTGATAAAACAAAAT 59.477 37.500 0.00 0.00 0.00 1.82
2859 3899 9.915629 AAAATGACATTTTACGGCTTTGTATTA 57.084 25.926 21.79 0.00 40.44 0.98
2860 3900 8.905103 AATGACATTTTACGGCTTTGTATTAC 57.095 30.769 0.00 0.00 0.00 1.89
2861 3901 7.675962 TGACATTTTACGGCTTTGTATTACT 57.324 32.000 0.00 0.00 0.00 2.24
2862 3902 7.745015 TGACATTTTACGGCTTTGTATTACTC 58.255 34.615 0.00 0.00 0.00 2.59
2863 3903 7.080353 ACATTTTACGGCTTTGTATTACTCC 57.920 36.000 0.00 0.00 0.00 3.85
2864 3904 6.094464 ACATTTTACGGCTTTGTATTACTCCC 59.906 38.462 0.00 0.00 0.00 4.30
2865 3905 5.425196 TTTACGGCTTTGTATTACTCCCT 57.575 39.130 0.00 0.00 0.00 4.20
2866 3906 3.538634 ACGGCTTTGTATTACTCCCTC 57.461 47.619 0.00 0.00 0.00 4.30
2867 3907 2.169978 ACGGCTTTGTATTACTCCCTCC 59.830 50.000 0.00 0.00 0.00 4.30
2868 3908 2.802057 CGGCTTTGTATTACTCCCTCCG 60.802 54.545 0.00 0.00 0.00 4.63
2869 3909 2.169978 GGCTTTGTATTACTCCCTCCGT 59.830 50.000 0.00 0.00 0.00 4.69
2870 3910 3.455327 GCTTTGTATTACTCCCTCCGTC 58.545 50.000 0.00 0.00 0.00 4.79
2871 3911 3.740452 GCTTTGTATTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
2872 3912 2.077687 TGTATTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
2873 3913 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
2874 3914 2.292389 TGTATTACTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
2875 3915 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2876 3916 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2877 3917 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2878 3918 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2879 3919 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2880 3920 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2881 3921 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2882 3922 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2883 3923 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2884 3924 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2885 3925 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2886 3926 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2887 3927 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2888 3928 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2889 3929 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2890 3930 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2891 3931 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2892 3932 5.003804 TCCCAAAATAAGTGTCTTGAGCTC 58.996 41.667 6.82 6.82 0.00 4.09
2893 3933 4.761739 CCCAAAATAAGTGTCTTGAGCTCA 59.238 41.667 13.74 13.74 0.00 4.26
2894 3934 5.241506 CCCAAAATAAGTGTCTTGAGCTCAA 59.758 40.000 26.87 26.87 0.00 3.02
2908 3948 5.947228 TGAGCTCAAGACACTTATTTTGG 57.053 39.130 15.67 0.00 0.00 3.28
2909 3949 5.620206 TGAGCTCAAGACACTTATTTTGGA 58.380 37.500 15.67 0.00 0.00 3.53
2910 3950 6.061441 TGAGCTCAAGACACTTATTTTGGAA 58.939 36.000 15.67 0.00 0.00 3.53
2911 3951 6.017109 TGAGCTCAAGACACTTATTTTGGAAC 60.017 38.462 15.67 0.00 0.00 3.62
2912 3952 5.049405 AGCTCAAGACACTTATTTTGGAACG 60.049 40.000 0.00 0.00 0.00 3.95
2913 3953 5.682943 TCAAGACACTTATTTTGGAACGG 57.317 39.130 0.00 0.00 0.00 4.44
2914 3954 5.369833 TCAAGACACTTATTTTGGAACGGA 58.630 37.500 0.00 0.00 0.00 4.69
2915 3955 5.468746 TCAAGACACTTATTTTGGAACGGAG 59.531 40.000 0.00 0.00 0.00 4.63
2916 3956 4.324267 AGACACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2917 3957 3.418047 ACACTTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
2918 3958 3.073356 ACACTTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
2919 3959 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
2920 3960 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
3011 4157 9.847224 AAAACTCCATCCTTGATAATACGTATT 57.153 29.630 23.36 23.36 0.00 1.89
3015 4161 8.997621 TCCATCCTTGATAATACGTATTTAGC 57.002 34.615 24.81 14.79 0.00 3.09
3016 4162 8.812972 TCCATCCTTGATAATACGTATTTAGCT 58.187 33.333 24.81 8.73 0.00 3.32
3398 4544 8.975439 GTTTGAACTATATGTCCTATACAACGG 58.025 37.037 0.00 0.00 42.70 4.44
3401 4547 8.786898 TGAACTATATGTCCTATACAACGGTAC 58.213 37.037 0.00 0.00 42.70 3.34
3424 4570 4.154918 CAGAGTAATTCCTTCGCTTTTGCT 59.845 41.667 0.00 0.00 44.80 3.91
3545 4691 5.832595 ACAATATTATTGTGGCACCATAGCA 59.167 36.000 18.86 6.05 35.83 3.49
3551 4697 2.246469 TGTGGCACCATAGCACAATTT 58.754 42.857 16.26 0.00 35.83 1.82
3601 4747 5.870706 GGGGTTATCCTCCTTTTCATAGAG 58.129 45.833 0.00 0.00 35.33 2.43
3605 4751 7.717436 GGGTTATCCTCCTTTTCATAGAGAAAG 59.283 40.741 0.00 0.00 46.24 2.62
3606 4752 8.487028 GGTTATCCTCCTTTTCATAGAGAAAGA 58.513 37.037 0.00 0.00 46.24 2.52
3650 4796 2.955660 CTGAGGGAGGAGAGTATGTGAC 59.044 54.545 0.00 0.00 0.00 3.67
3684 4830 7.497909 CGGTATTGTACATAAGTGGAAGGAAAT 59.502 37.037 0.00 0.00 0.00 2.17
3755 4901 7.845066 ACATGCTAATATATGCACATCTCAG 57.155 36.000 4.93 0.00 42.26 3.35
3829 4975 8.614469 AAAATTGGTTTTGACTAGAGAGAGAG 57.386 34.615 0.00 0.00 36.24 3.20
3854 5104 8.101419 AGAGAAAAACGTTATCCCTCTTTACAT 58.899 33.333 0.00 0.00 0.00 2.29
3855 5105 8.040716 AGAAAAACGTTATCCCTCTTTACATG 57.959 34.615 0.00 0.00 0.00 3.21
3856 5106 5.813080 AAACGTTATCCCTCTTTACATGC 57.187 39.130 0.00 0.00 0.00 4.06
3857 5107 3.805207 ACGTTATCCCTCTTTACATGCC 58.195 45.455 0.00 0.00 0.00 4.40
3858 5108 3.139077 CGTTATCCCTCTTTACATGCCC 58.861 50.000 0.00 0.00 0.00 5.36
3859 5109 3.433031 CGTTATCCCTCTTTACATGCCCA 60.433 47.826 0.00 0.00 0.00 5.36
3900 5150 3.853307 GCTGCTTGACAACCATTGTGTAC 60.853 47.826 0.00 0.00 45.52 2.90
3901 5151 3.550820 TGCTTGACAACCATTGTGTACT 58.449 40.909 0.00 0.00 45.52 2.73
3904 5154 4.275936 GCTTGACAACCATTGTGTACTCTT 59.724 41.667 0.00 0.00 45.52 2.85
3905 5155 5.749596 TTGACAACCATTGTGTACTCTTG 57.250 39.130 0.00 0.00 45.52 3.02
3906 5156 4.776349 TGACAACCATTGTGTACTCTTGT 58.224 39.130 0.00 0.00 45.52 3.16
3907 5157 4.574421 TGACAACCATTGTGTACTCTTGTG 59.426 41.667 0.00 0.00 45.52 3.33
3908 5158 4.523083 ACAACCATTGTGTACTCTTGTGT 58.477 39.130 0.00 0.00 43.48 3.72
3909 5159 5.676552 ACAACCATTGTGTACTCTTGTGTA 58.323 37.500 0.00 0.00 43.48 2.90
3912 5162 7.284489 ACAACCATTGTGTACTCTTGTGTAATT 59.716 33.333 0.00 0.00 43.48 1.40
3913 5163 7.817418 ACCATTGTGTACTCTTGTGTAATTT 57.183 32.000 0.00 0.00 0.00 1.82
3914 5164 7.648142 ACCATTGTGTACTCTTGTGTAATTTG 58.352 34.615 0.00 0.00 0.00 2.32
3916 5166 5.682943 TGTGTACTCTTGTGTAATTTGCC 57.317 39.130 0.00 0.00 0.00 4.52
3918 5168 5.238432 TGTGTACTCTTGTGTAATTTGCCAG 59.762 40.000 0.00 0.00 0.00 4.85
3919 5169 4.759693 TGTACTCTTGTGTAATTTGCCAGG 59.240 41.667 0.00 0.00 0.00 4.45
3920 5170 3.157087 ACTCTTGTGTAATTTGCCAGGG 58.843 45.455 0.00 0.00 0.00 4.45
3921 5171 3.157087 CTCTTGTGTAATTTGCCAGGGT 58.843 45.455 0.00 0.00 0.00 4.34
3922 5172 2.890311 TCTTGTGTAATTTGCCAGGGTG 59.110 45.455 0.00 0.00 0.00 4.61
3923 5173 1.626686 TGTGTAATTTGCCAGGGTGG 58.373 50.000 0.00 0.00 41.55 4.61
4071 5386 7.315142 TCTTCTTGTAATTAAGCAAATGCAGG 58.685 34.615 8.28 0.00 45.16 4.85
4073 5388 7.695480 TCTTGTAATTAAGCAAATGCAGGTA 57.305 32.000 8.28 0.00 45.16 3.08
4074 5389 8.116651 TCTTGTAATTAAGCAAATGCAGGTAA 57.883 30.769 8.28 3.80 45.16 2.85
4252 5588 2.029020 TGGACGTGGATGCATATCTAGC 60.029 50.000 0.00 0.00 33.68 3.42
4483 5819 4.504514 CGGGAGAAGGATGTGATGATCAAT 60.505 45.833 0.00 0.00 0.00 2.57
4529 5907 4.831710 AGAAGATGATGATGATGAGGTCGA 59.168 41.667 0.00 0.00 0.00 4.20
4530 5908 5.481122 AGAAGATGATGATGATGAGGTCGAT 59.519 40.000 0.00 0.00 0.00 3.59
4531 5909 5.327616 AGATGATGATGATGAGGTCGATC 57.672 43.478 0.00 0.00 0.00 3.69
4533 5911 2.887152 TGATGATGATGAGGTCGATCGT 59.113 45.455 15.94 0.00 0.00 3.73
4534 5912 4.072131 TGATGATGATGAGGTCGATCGTA 58.928 43.478 15.94 0.00 0.00 3.43
4538 5916 1.886542 TGATGAGGTCGATCGTATGGG 59.113 52.381 15.94 0.00 0.00 4.00
4539 5917 0.603569 ATGAGGTCGATCGTATGGGC 59.396 55.000 15.94 2.08 0.00 5.36
4541 5919 1.512996 GAGGTCGATCGTATGGGCGA 61.513 60.000 15.94 0.00 45.32 5.54
4622 6000 2.355756 CGACATTTTTGATCCGATGCCT 59.644 45.455 0.00 0.00 0.00 4.75
4624 6002 2.159198 ACATTTTTGATCCGATGCCTGC 60.159 45.455 0.00 0.00 0.00 4.85
4625 6003 0.817013 TTTTTGATCCGATGCCTGCC 59.183 50.000 0.00 0.00 0.00 4.85
4626 6004 1.375853 TTTTGATCCGATGCCTGCCG 61.376 55.000 0.00 0.00 0.00 5.69
4632 6017 2.279517 CGATGCCTGCCGGTACTC 60.280 66.667 1.90 0.00 0.00 2.59
4653 6038 5.476945 ACTCCTGAACCGCAAAGATTAAAAT 59.523 36.000 0.00 0.00 0.00 1.82
4687 6072 2.801631 CGGGTCAGCTGGGAGATCC 61.802 68.421 15.13 2.76 0.00 3.36
4717 6102 0.457337 AGATGGAAACCGTCGTACGC 60.457 55.000 11.24 4.96 43.76 4.42
4841 6234 7.841956 TCCTCTCTACCAGAGTAATTTTCTTG 58.158 38.462 3.26 0.00 46.85 3.02
4852 6245 4.835056 AGTAATTTTCTTGCAAGGAGGCTT 59.165 37.500 25.73 13.69 34.04 4.35
4853 6246 4.694760 AATTTTCTTGCAAGGAGGCTTT 57.305 36.364 25.73 9.90 34.04 3.51
4878 6271 6.180472 TCTCTTCTGGTCCCAATATTGTTTC 58.820 40.000 14.25 4.04 0.00 2.78
4879 6272 5.886609 TCTTCTGGTCCCAATATTGTTTCA 58.113 37.500 14.25 6.34 0.00 2.69
4880 6273 5.710099 TCTTCTGGTCCCAATATTGTTTCAC 59.290 40.000 14.25 5.05 0.00 3.18
4881 6274 5.255397 TCTGGTCCCAATATTGTTTCACT 57.745 39.130 14.25 0.00 0.00 3.41
4882 6275 5.640147 TCTGGTCCCAATATTGTTTCACTT 58.360 37.500 14.25 0.00 0.00 3.16
4883 6276 5.710099 TCTGGTCCCAATATTGTTTCACTTC 59.290 40.000 14.25 0.00 0.00 3.01
4885 6278 6.074648 TGGTCCCAATATTGTTTCACTTCTT 58.925 36.000 14.25 0.00 0.00 2.52
4886 6279 7.235079 TGGTCCCAATATTGTTTCACTTCTTA 58.765 34.615 14.25 0.00 0.00 2.10
4887 6280 7.726291 TGGTCCCAATATTGTTTCACTTCTTAA 59.274 33.333 14.25 0.00 0.00 1.85
4914 6307 9.905713 TTAAGAGATGCAACAGGTTATTTCTAT 57.094 29.630 0.00 0.00 0.00 1.98
4921 6314 6.014669 TGCAACAGGTTATTTCTATGGCTTTT 60.015 34.615 0.00 0.00 0.00 2.27
4942 6335 4.448537 TTTTTGTGCCGGGATTTCTATG 57.551 40.909 2.18 0.00 0.00 2.23
4943 6336 2.051334 TTGTGCCGGGATTTCTATGG 57.949 50.000 2.18 0.00 0.00 2.74
4944 6337 0.465460 TGTGCCGGGATTTCTATGGC 60.465 55.000 2.18 0.00 45.91 4.40
4945 6338 0.179018 GTGCCGGGATTTCTATGGCT 60.179 55.000 2.18 0.00 45.90 4.75
4946 6339 0.550914 TGCCGGGATTTCTATGGCTT 59.449 50.000 2.18 0.00 45.90 4.35
4947 6340 1.064017 TGCCGGGATTTCTATGGCTTT 60.064 47.619 2.18 0.00 45.90 3.51
4948 6341 1.609072 GCCGGGATTTCTATGGCTTTC 59.391 52.381 2.18 0.00 42.44 2.62
4949 6342 2.749800 GCCGGGATTTCTATGGCTTTCT 60.750 50.000 2.18 0.00 42.44 2.52
4950 6343 3.496160 GCCGGGATTTCTATGGCTTTCTA 60.496 47.826 2.18 0.00 42.44 2.10
4957 6350 8.787852 GGGATTTCTATGGCTTTCTATTTAGTG 58.212 37.037 0.00 0.00 0.00 2.74
4964 6357 9.331282 CTATGGCTTTCTATTTAGTGTTTAGCT 57.669 33.333 0.00 0.00 0.00 3.32
4967 6360 7.663905 TGGCTTTCTATTTAGTGTTTAGCTCAA 59.336 33.333 0.00 0.00 0.00 3.02
4984 6377 9.781633 TTTAGCTCAAGTAGTTTTATGTAACCA 57.218 29.630 0.00 0.00 0.00 3.67
4985 6378 7.668525 AGCTCAAGTAGTTTTATGTAACCAC 57.331 36.000 0.00 0.00 0.00 4.16
4986 6379 7.450903 AGCTCAAGTAGTTTTATGTAACCACT 58.549 34.615 0.00 0.00 32.53 4.00
4989 6382 8.373048 TCAAGTAGTTTTATGTAACCACTGTG 57.627 34.615 0.00 0.00 31.77 3.66
4991 6384 6.292923 AGTAGTTTTATGTAACCACTGTGCA 58.707 36.000 1.29 0.00 30.51 4.57
4992 6385 6.768861 AGTAGTTTTATGTAACCACTGTGCAA 59.231 34.615 1.29 0.00 30.51 4.08
4993 6386 6.072112 AGTTTTATGTAACCACTGTGCAAG 57.928 37.500 1.29 0.00 0.00 4.01
4997 6395 2.503331 TGTAACCACTGTGCAAGATGG 58.497 47.619 1.29 9.31 34.82 3.51
5005 6403 1.290009 GTGCAAGATGGGGCAACAC 59.710 57.895 0.00 0.00 42.45 3.32
5019 6417 4.694982 GGGGCAACACAATGGAAAATAAAG 59.305 41.667 0.00 0.00 42.67 1.85
5048 6456 7.713734 ATTTGTTGAATCCAAGACATGATCT 57.286 32.000 0.00 0.00 40.46 2.75
5057 6465 7.615039 ATCCAAGACATGATCTCAATACTCT 57.385 36.000 0.00 0.00 36.27 3.24
5058 6466 7.048629 TCCAAGACATGATCTCAATACTCTC 57.951 40.000 0.00 0.00 36.27 3.20
5059 6467 6.608808 TCCAAGACATGATCTCAATACTCTCA 59.391 38.462 0.00 0.00 36.27 3.27
5060 6468 6.700960 CCAAGACATGATCTCAATACTCTCAC 59.299 42.308 0.00 0.00 36.27 3.51
5066 6479 8.633561 ACATGATCTCAATACTCTCACGAATAA 58.366 33.333 0.00 0.00 0.00 1.40
5084 6497 9.687717 CACGAATAAAAACATTATTTTGCATCC 57.312 29.630 0.00 0.00 34.51 3.51
5085 6498 9.651913 ACGAATAAAAACATTATTTTGCATCCT 57.348 25.926 0.00 0.00 34.51 3.24
5086 6499 9.904647 CGAATAAAAACATTATTTTGCATCCTG 57.095 29.630 0.00 0.00 34.51 3.86
5089 6502 6.973229 AAAACATTATTTTGCATCCTGAGC 57.027 33.333 0.00 0.00 0.00 4.26
5090 6503 4.660789 ACATTATTTTGCATCCTGAGCC 57.339 40.909 0.00 0.00 0.00 4.70
5091 6504 4.025360 ACATTATTTTGCATCCTGAGCCA 58.975 39.130 0.00 0.00 0.00 4.75
5092 6505 4.467082 ACATTATTTTGCATCCTGAGCCAA 59.533 37.500 0.00 0.00 0.00 4.52
5093 6506 5.046448 ACATTATTTTGCATCCTGAGCCAAA 60.046 36.000 0.00 0.00 32.26 3.28
5094 6507 5.480642 TTATTTTGCATCCTGAGCCAAAA 57.519 34.783 8.97 8.97 31.62 2.44
5095 6508 3.834489 TTTTGCATCCTGAGCCAAAAA 57.166 38.095 0.00 0.00 0.00 1.94
5114 6527 3.334272 AAACACTTTGTCGCTAGTTGC 57.666 42.857 0.00 0.00 38.57 4.17
5115 6528 1.948104 ACACTTTGTCGCTAGTTGCA 58.052 45.000 0.00 0.00 43.06 4.08
5116 6529 1.597663 ACACTTTGTCGCTAGTTGCAC 59.402 47.619 0.00 0.00 43.06 4.57
5117 6530 0.859232 ACTTTGTCGCTAGTTGCACG 59.141 50.000 0.00 0.00 43.06 5.34
5118 6531 0.859232 CTTTGTCGCTAGTTGCACGT 59.141 50.000 0.00 0.00 43.06 4.49
5119 6532 1.260561 CTTTGTCGCTAGTTGCACGTT 59.739 47.619 0.00 0.00 43.06 3.99
5120 6533 2.137129 TTGTCGCTAGTTGCACGTTA 57.863 45.000 0.00 0.00 43.06 3.18
5121 6534 1.693467 TGTCGCTAGTTGCACGTTAG 58.307 50.000 0.00 0.00 43.06 2.34
5122 6535 1.267533 TGTCGCTAGTTGCACGTTAGA 59.732 47.619 0.00 0.00 43.06 2.10
5123 6536 2.094906 TGTCGCTAGTTGCACGTTAGAT 60.095 45.455 0.00 0.00 43.06 1.98
5124 6537 2.921754 GTCGCTAGTTGCACGTTAGATT 59.078 45.455 0.00 0.00 43.06 2.40
5125 6538 2.921121 TCGCTAGTTGCACGTTAGATTG 59.079 45.455 0.00 0.00 43.06 2.67
5126 6539 2.029244 CGCTAGTTGCACGTTAGATTGG 59.971 50.000 0.00 0.00 43.06 3.16
5127 6540 2.351726 GCTAGTTGCACGTTAGATTGGG 59.648 50.000 0.00 0.00 42.31 4.12
5128 6541 1.165270 AGTTGCACGTTAGATTGGGC 58.835 50.000 0.00 0.00 0.00 5.36
5129 6542 0.179200 GTTGCACGTTAGATTGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
5130 6543 1.302383 TTGCACGTTAGATTGGGCGG 61.302 55.000 0.00 0.00 0.00 6.13
5131 6544 3.098555 CACGTTAGATTGGGCGGC 58.901 61.111 0.00 0.00 0.00 6.53
5132 6545 1.449601 CACGTTAGATTGGGCGGCT 60.450 57.895 9.56 0.00 0.00 5.52
5133 6546 0.179094 CACGTTAGATTGGGCGGCTA 60.179 55.000 9.56 0.00 0.00 3.93
5134 6547 0.104304 ACGTTAGATTGGGCGGCTAG 59.896 55.000 9.56 0.00 0.00 3.42
5135 6548 0.104304 CGTTAGATTGGGCGGCTAGT 59.896 55.000 9.56 0.00 0.00 2.57
5136 6549 1.867166 GTTAGATTGGGCGGCTAGTC 58.133 55.000 9.56 9.65 0.00 2.59
5138 6551 1.119574 TAGATTGGGCGGCTAGTCCC 61.120 60.000 13.75 9.17 46.38 4.46
5139 6552 3.477578 GATTGGGCGGCTAGTCCCC 62.478 68.421 9.56 12.60 46.38 4.81
5140 6553 4.733725 TTGGGCGGCTAGTCCCCT 62.734 66.667 18.33 0.00 46.38 4.79
5141 6554 4.733725 TGGGCGGCTAGTCCCCTT 62.734 66.667 18.33 0.00 46.38 3.95
5142 6555 3.862991 GGGCGGCTAGTCCCCTTC 61.863 72.222 9.56 0.00 39.18 3.46
5143 6556 2.764547 GGCGGCTAGTCCCCTTCT 60.765 66.667 0.00 0.00 0.00 2.85
5144 6557 2.501610 GCGGCTAGTCCCCTTCTG 59.498 66.667 0.00 0.00 0.00 3.02
5145 6558 3.095347 GCGGCTAGTCCCCTTCTGG 62.095 68.421 0.00 0.00 0.00 3.86
5146 6559 2.911928 GGCTAGTCCCCTTCTGGC 59.088 66.667 0.00 0.00 38.40 4.85
5147 6560 2.501610 GCTAGTCCCCTTCTGGCG 59.498 66.667 0.00 0.00 30.65 5.69
5148 6561 2.359967 GCTAGTCCCCTTCTGGCGT 61.360 63.158 0.00 0.00 30.65 5.68
5149 6562 1.041447 GCTAGTCCCCTTCTGGCGTA 61.041 60.000 0.00 0.00 30.65 4.42
5150 6563 1.481871 CTAGTCCCCTTCTGGCGTAA 58.518 55.000 0.00 0.00 0.00 3.18
5151 6564 2.040178 CTAGTCCCCTTCTGGCGTAAT 58.960 52.381 0.00 0.00 0.00 1.89
5152 6565 0.831307 AGTCCCCTTCTGGCGTAATC 59.169 55.000 0.00 0.00 0.00 1.75
5153 6566 0.831307 GTCCCCTTCTGGCGTAATCT 59.169 55.000 0.00 0.00 0.00 2.40
5154 6567 1.209747 GTCCCCTTCTGGCGTAATCTT 59.790 52.381 0.00 0.00 0.00 2.40
5155 6568 1.913419 TCCCCTTCTGGCGTAATCTTT 59.087 47.619 0.00 0.00 0.00 2.52
5156 6569 2.307686 TCCCCTTCTGGCGTAATCTTTT 59.692 45.455 0.00 0.00 0.00 2.27
5157 6570 2.683362 CCCCTTCTGGCGTAATCTTTTC 59.317 50.000 0.00 0.00 0.00 2.29
5158 6571 3.343617 CCCTTCTGGCGTAATCTTTTCA 58.656 45.455 0.00 0.00 0.00 2.69
5159 6572 3.756434 CCCTTCTGGCGTAATCTTTTCAA 59.244 43.478 0.00 0.00 0.00 2.69
5160 6573 4.399303 CCCTTCTGGCGTAATCTTTTCAAT 59.601 41.667 0.00 0.00 0.00 2.57
5161 6574 5.335127 CCTTCTGGCGTAATCTTTTCAATG 58.665 41.667 0.00 0.00 0.00 2.82
5162 6575 5.123820 CCTTCTGGCGTAATCTTTTCAATGA 59.876 40.000 0.00 0.00 0.00 2.57
5163 6576 6.183360 CCTTCTGGCGTAATCTTTTCAATGAT 60.183 38.462 0.00 0.00 0.00 2.45
5164 6577 6.363577 TCTGGCGTAATCTTTTCAATGATC 57.636 37.500 0.00 0.00 0.00 2.92
5165 6578 6.115446 TCTGGCGTAATCTTTTCAATGATCT 58.885 36.000 0.00 0.00 0.00 2.75
5166 6579 6.599244 TCTGGCGTAATCTTTTCAATGATCTT 59.401 34.615 0.00 0.00 0.00 2.40
5167 6580 6.785191 TGGCGTAATCTTTTCAATGATCTTC 58.215 36.000 0.00 0.00 0.00 2.87
5168 6581 6.599244 TGGCGTAATCTTTTCAATGATCTTCT 59.401 34.615 0.00 0.00 0.00 2.85
5169 6582 7.768582 TGGCGTAATCTTTTCAATGATCTTCTA 59.231 33.333 0.00 0.00 0.00 2.10
5170 6583 8.279103 GGCGTAATCTTTTCAATGATCTTCTAG 58.721 37.037 0.00 0.00 0.00 2.43
5171 6584 9.035607 GCGTAATCTTTTCAATGATCTTCTAGA 57.964 33.333 0.00 0.00 0.00 2.43
5174 6587 8.430801 AATCTTTTCAATGATCTTCTAGACGG 57.569 34.615 0.00 0.00 0.00 4.79
5175 6588 7.170393 TCTTTTCAATGATCTTCTAGACGGA 57.830 36.000 0.00 0.00 0.00 4.69
5176 6589 7.261325 TCTTTTCAATGATCTTCTAGACGGAG 58.739 38.462 0.00 0.00 0.00 4.63
5177 6590 6.775594 TTTCAATGATCTTCTAGACGGAGA 57.224 37.500 0.00 0.00 0.00 3.71
5178 6591 6.968263 TTCAATGATCTTCTAGACGGAGAT 57.032 37.500 5.30 5.30 0.00 2.75
5179 6592 6.567687 TCAATGATCTTCTAGACGGAGATC 57.432 41.667 19.62 19.62 36.76 2.75
5180 6593 5.180304 TCAATGATCTTCTAGACGGAGATCG 59.820 44.000 20.46 11.46 45.88 3.69
5189 6602 4.521075 CGGAGATCGTGGTGCATT 57.479 55.556 0.00 0.00 0.00 3.56
5190 6603 2.009108 CGGAGATCGTGGTGCATTG 58.991 57.895 0.00 0.00 0.00 2.82
5191 6604 0.740868 CGGAGATCGTGGTGCATTGT 60.741 55.000 0.00 0.00 0.00 2.71
5192 6605 1.453155 GGAGATCGTGGTGCATTGTT 58.547 50.000 0.00 0.00 0.00 2.83
5193 6606 1.131126 GGAGATCGTGGTGCATTGTTG 59.869 52.381 0.00 0.00 0.00 3.33
5249 6662 3.423996 TTGTGGGTCTTTGTAAAACGC 57.576 42.857 0.00 0.00 0.00 4.84
5271 6684 5.235305 CTCTTGTAGCAACAACAACTTGT 57.765 39.130 0.00 0.00 42.81 3.16
5279 6692 5.126067 AGCAACAACAACTTGTATCTCACT 58.874 37.500 0.00 0.00 39.88 3.41
5280 6693 5.008019 AGCAACAACAACTTGTATCTCACTG 59.992 40.000 0.00 0.00 39.88 3.66
5296 6710 9.167311 GTATCTCACTGTTCCTTTGTCATTTAT 57.833 33.333 0.00 0.00 0.00 1.40
5297 6711 7.439157 TCTCACTGTTCCTTTGTCATTTATG 57.561 36.000 0.00 0.00 0.00 1.90
5305 6971 5.537188 TCCTTTGTCATTTATGTTGTTGGC 58.463 37.500 0.00 0.00 0.00 4.52
5308 6974 5.781210 TTGTCATTTATGTTGTTGGCAGA 57.219 34.783 0.00 0.00 0.00 4.26
5315 6981 9.770097 TCATTTATGTTGTTGGCAGAAAATAAA 57.230 25.926 14.33 14.33 32.04 1.40
5352 7019 6.639632 ATTATGGTATTGTTCATGAGGCAC 57.360 37.500 0.00 0.00 0.00 5.01
5355 7022 2.351726 GGTATTGTTCATGAGGCACGAC 59.648 50.000 0.00 0.84 0.00 4.34
5358 7025 0.392706 TGTTCATGAGGCACGACTGT 59.607 50.000 0.00 0.00 0.00 3.55
5470 7138 4.553323 TCAAAGCTCCGTGTACTCTAAAC 58.447 43.478 0.00 0.00 0.00 2.01
5471 7139 2.915738 AGCTCCGTGTACTCTAAACG 57.084 50.000 0.00 0.00 37.07 3.60
5472 7140 1.135460 AGCTCCGTGTACTCTAAACGC 60.135 52.381 0.00 0.00 36.02 4.84
5479 7147 4.556523 CCGTGTACTCTAAACGCTAGTTTC 59.443 45.833 0.00 0.00 46.73 2.78
5482 7150 5.507527 GTGTACTCTAAACGCTAGTTTCTCG 59.492 44.000 0.00 0.00 46.73 4.04
5486 7154 5.048852 ACTCTAAACGCTAGTTTCTCGTTCT 60.049 40.000 5.70 1.12 46.73 3.01
5493 7161 3.181494 GCTAGTTTCTCGTTCTCCCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
5494 7162 3.163616 AGTTTCTCGTTCTCCCTCTCT 57.836 47.619 0.00 0.00 0.00 3.10
5496 7164 4.266714 AGTTTCTCGTTCTCCCTCTCTAG 58.733 47.826 0.00 0.00 0.00 2.43
5500 7168 5.118729 TCTCGTTCTCCCTCTCTAGAAAT 57.881 43.478 0.00 0.00 33.70 2.17
5518 7186 7.741513 CTAGAAATCCTAGATAGCCGTCAGCA 61.742 46.154 0.00 0.00 46.17 4.41
5519 7187 9.639424 CTAGAAATCCTAGATAGCCGTCAGCAC 62.639 48.148 0.00 0.00 46.17 4.40
5528 7196 3.775654 CGTCAGCACTCCCCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
5554 7222 2.716217 GCAAGGCCACAAATCTACTCT 58.284 47.619 5.01 0.00 0.00 3.24
5556 7224 3.873952 GCAAGGCCACAAATCTACTCTAG 59.126 47.826 5.01 0.00 0.00 2.43
5559 7227 3.386402 AGGCCACAAATCTACTCTAGCTC 59.614 47.826 5.01 0.00 0.00 4.09
5561 7229 3.133003 GCCACAAATCTACTCTAGCTCCA 59.867 47.826 0.00 0.00 0.00 3.86
5564 7232 4.404073 CACAAATCTACTCTAGCTCCACCT 59.596 45.833 0.00 0.00 0.00 4.00
5568 7236 0.752009 TACTCTAGCTCCACCTGCCG 60.752 60.000 0.00 0.00 0.00 5.69
5591 7259 3.037686 AACGGTGGCACTGTGGTGA 62.038 57.895 31.24 0.00 45.61 4.02
5598 7266 0.035152 GGCACTGTGGTGATGATGGA 60.035 55.000 10.21 0.00 45.61 3.41
5599 7267 1.409241 GGCACTGTGGTGATGATGGAT 60.409 52.381 10.21 0.00 45.61 3.41
5601 7269 2.942752 GCACTGTGGTGATGATGGATGT 60.943 50.000 10.21 0.00 45.61 3.06
5605 7273 3.114606 TGTGGTGATGATGGATGTACCT 58.885 45.455 0.00 0.00 39.86 3.08
5610 7278 3.947196 GTGATGATGGATGTACCTTGCAA 59.053 43.478 0.00 0.00 39.86 4.08
5614 7282 4.598022 TGATGGATGTACCTTGCAAATCA 58.402 39.130 0.00 0.34 39.86 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.115021 GTGCGACCTTGAATTTAAACTTTCG 59.885 40.000 0.00 0.00 0.00 3.46
65 66 3.740885 TTGTCACCCCTCCCCCACA 62.741 63.158 0.00 0.00 0.00 4.17
68 69 4.048470 GCTTGTCACCCCTCCCCC 62.048 72.222 0.00 0.00 0.00 5.40
184 185 8.721478 TCAAGTAAATTCAAGTGATCTGTAAGC 58.279 33.333 0.00 0.00 0.00 3.09
188 189 9.956720 CTTTTCAAGTAAATTCAAGTGATCTGT 57.043 29.630 0.00 0.00 0.00 3.41
303 306 6.389091 ACTGCGAAATTAATGAGATTTGCAA 58.611 32.000 11.75 0.00 33.96 4.08
352 355 8.960591 ACAAACTAAATTGATTAGCTAGCACAT 58.039 29.630 18.83 8.00 44.11 3.21
383 386 4.019858 CCATCAGGACTACTCTCAGTTCA 58.980 47.826 0.00 0.00 36.89 3.18
392 395 4.031611 GGAACCTAACCATCAGGACTACT 58.968 47.826 0.00 0.00 38.69 2.57
413 416 0.105039 GAGGTATCGAGCCCACAAGG 59.895 60.000 5.99 0.00 39.47 3.61
440 443 4.380023 GCACGCTCACCCTATCTCTATAAG 60.380 50.000 0.00 0.00 0.00 1.73
452 455 1.094785 AAACATATGCACGCTCACCC 58.905 50.000 1.58 0.00 0.00 4.61
457 460 3.616219 TCCCTAAAAACATATGCACGCT 58.384 40.909 1.58 0.00 0.00 5.07
562 565 7.979537 TGCTTTGTATTGACTCGATACTACATT 59.020 33.333 14.95 0.00 33.26 2.71
596 599 5.571784 ATCACCTCGATGTTTTCTACGTA 57.428 39.130 0.00 0.00 31.20 3.57
597 600 3.928727 TCACCTCGATGTTTTCTACGT 57.071 42.857 0.00 0.00 0.00 3.57
599 602 8.569641 AGTCTATATCACCTCGATGTTTTCTAC 58.430 37.037 0.00 0.00 35.39 2.59
723 740 0.178973 CGTTTGGGAAAGGGGGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
922 999 3.497763 GAGACAGATCTCTGGGCTAGCTA 60.498 52.174 15.72 3.29 46.93 3.32
940 1017 0.634465 AAGAGGGGGAGAGGAGAGAC 59.366 60.000 0.00 0.00 0.00 3.36
1011 1091 0.455410 TGTGTGTGGTTTTGCTGCTC 59.545 50.000 0.00 0.00 0.00 4.26
1071 1162 0.109781 GCACAAGTGGCGGTATGTTG 60.110 55.000 2.00 0.00 0.00 3.33
1113 1204 0.832135 TTCTTCCTCCTGTCACCGCT 60.832 55.000 0.00 0.00 0.00 5.52
1115 1206 1.257743 TCTTCTTCCTCCTGTCACCG 58.742 55.000 0.00 0.00 0.00 4.94
1337 1442 2.547218 GGAACTCACCAGCGTGTAGAAA 60.547 50.000 0.00 0.00 41.09 2.52
1367 1502 3.913573 GCGAGCATGGCACGTACG 61.914 66.667 15.01 15.01 43.77 3.67
1390 1525 1.064463 TGGGAGGAGCAATTAAGCAGG 60.064 52.381 0.00 0.00 36.85 4.85
1393 1528 2.293170 GACTGGGAGGAGCAATTAAGC 58.707 52.381 0.00 0.00 0.00 3.09
1394 1529 2.507471 AGGACTGGGAGGAGCAATTAAG 59.493 50.000 0.00 0.00 0.00 1.85
1395 1530 2.562296 AGGACTGGGAGGAGCAATTAA 58.438 47.619 0.00 0.00 0.00 1.40
1397 1532 2.122768 CTAGGACTGGGAGGAGCAATT 58.877 52.381 0.00 0.00 0.00 2.32
1399 1534 0.710588 TCTAGGACTGGGAGGAGCAA 59.289 55.000 0.00 0.00 0.00 3.91
1401 1536 2.095604 AATCTAGGACTGGGAGGAGC 57.904 55.000 0.00 0.00 0.00 4.70
1403 1538 4.901785 AAGTAATCTAGGACTGGGAGGA 57.098 45.455 0.00 0.00 0.00 3.71
1404 1539 5.707495 AGTAAGTAATCTAGGACTGGGAGG 58.293 45.833 0.00 0.00 0.00 4.30
1405 1540 6.607019 AGAGTAAGTAATCTAGGACTGGGAG 58.393 44.000 0.00 0.00 0.00 4.30
1406 1541 6.593759 AGAGTAAGTAATCTAGGACTGGGA 57.406 41.667 0.00 0.00 0.00 4.37
1407 1542 7.989416 CTAGAGTAAGTAATCTAGGACTGGG 57.011 44.000 12.82 0.00 43.51 4.45
1563 1715 0.833287 CCAAGCAAGCTAGCTAGGGA 59.167 55.000 19.70 0.00 45.89 4.20
1568 1742 4.140536 GGATATTTCCAAGCAAGCTAGCT 58.859 43.478 12.68 12.68 42.12 3.32
1572 1746 2.024080 TGGGGATATTTCCAAGCAAGCT 60.024 45.455 4.48 0.00 44.60 3.74
1606 1780 1.306141 CTGGTGCTAGGTCAGGGGA 60.306 63.158 0.00 0.00 0.00 4.81
1608 1782 2.249413 CTGCTGGTGCTAGGTCAGGG 62.249 65.000 0.00 0.00 40.48 4.45
1661 2228 5.410746 CAGCTGTATACAAATATCTGCCTGG 59.589 44.000 5.25 0.00 0.00 4.45
1683 2250 0.474184 ATCCTATTTGGCCCGGTCAG 59.526 55.000 0.00 0.00 35.26 3.51
1688 2255 2.880890 CTGAAAGATCCTATTTGGCCCG 59.119 50.000 0.00 0.00 34.07 6.13
1712 2279 3.942130 AATCCCTTCGAAGGCTTTTTG 57.058 42.857 34.54 21.30 45.10 2.44
1740 2318 2.942376 CGTGAGAGAGTGAGTGAGCTAT 59.058 50.000 0.00 0.00 0.00 2.97
1741 2319 2.289756 ACGTGAGAGAGTGAGTGAGCTA 60.290 50.000 0.00 0.00 0.00 3.32
1742 2320 1.164411 CGTGAGAGAGTGAGTGAGCT 58.836 55.000 0.00 0.00 0.00 4.09
1743 2321 0.878416 ACGTGAGAGAGTGAGTGAGC 59.122 55.000 0.00 0.00 0.00 4.26
1744 2322 1.198867 CCACGTGAGAGAGTGAGTGAG 59.801 57.143 19.30 0.00 40.56 3.51
1745 2323 1.239347 CCACGTGAGAGAGTGAGTGA 58.761 55.000 19.30 0.00 40.56 3.41
1746 2324 0.955178 ACCACGTGAGAGAGTGAGTG 59.045 55.000 19.30 0.00 40.56 3.51
1747 2325 0.955178 CACCACGTGAGAGAGTGAGT 59.045 55.000 19.30 0.00 40.56 3.41
1785 2368 1.386533 GTGATGAGTGGGCCATTCAG 58.613 55.000 31.36 0.00 33.87 3.02
1801 2384 3.855255 TTGATTGAACTCAGGTGGTGA 57.145 42.857 0.00 0.00 0.00 4.02
1806 2389 6.736794 GCACAAGAATTTGATTGAACTCAGGT 60.737 38.462 6.13 0.00 37.73 4.00
1807 2390 5.632347 GCACAAGAATTTGATTGAACTCAGG 59.368 40.000 6.13 0.00 37.73 3.86
1808 2391 5.341462 CGCACAAGAATTTGATTGAACTCAG 59.659 40.000 6.13 0.00 37.73 3.35
1832 2423 3.264845 TTGGAGGGGAGGTTGGGC 61.265 66.667 0.00 0.00 0.00 5.36
1849 2440 5.491982 CCCTAGCATGAAGTACTTTTGAGT 58.508 41.667 18.53 10.07 0.00 3.41
1850 2441 4.333926 GCCCTAGCATGAAGTACTTTTGAG 59.666 45.833 18.53 10.47 39.53 3.02
1851 2442 4.019321 AGCCCTAGCATGAAGTACTTTTGA 60.019 41.667 18.53 4.96 43.56 2.69
1852 2443 4.265073 AGCCCTAGCATGAAGTACTTTTG 58.735 43.478 10.02 11.68 43.56 2.44
1853 2444 4.226168 AGAGCCCTAGCATGAAGTACTTTT 59.774 41.667 10.02 0.00 43.56 2.27
1854 2445 3.777522 AGAGCCCTAGCATGAAGTACTTT 59.222 43.478 10.02 0.00 43.56 2.66
1855 2446 3.379452 AGAGCCCTAGCATGAAGTACTT 58.621 45.455 8.13 8.13 43.56 2.24
1904 2495 7.895759 AGCTGTTCCTTTTCATTTATTTAGCA 58.104 30.769 0.00 0.00 0.00 3.49
1905 2496 8.763049 AAGCTGTTCCTTTTCATTTATTTAGC 57.237 30.769 0.00 0.00 0.00 3.09
1925 2600 3.761657 TGCGCATAAAATCAAGAAGCTG 58.238 40.909 5.66 0.00 0.00 4.24
1926 2601 3.691118 TCTGCGCATAAAATCAAGAAGCT 59.309 39.130 12.24 0.00 0.00 3.74
1971 2649 9.449719 CATTTGTTTACAGAGGGAGTATTTACT 57.550 33.333 0.00 0.00 39.71 2.24
1974 2652 9.975218 ATACATTTGTTTACAGAGGGAGTATTT 57.025 29.630 0.00 0.00 0.00 1.40
1977 2655 8.038944 GTCATACATTTGTTTACAGAGGGAGTA 58.961 37.037 0.00 0.00 0.00 2.59
1978 2656 6.879458 GTCATACATTTGTTTACAGAGGGAGT 59.121 38.462 0.00 0.00 0.00 3.85
1979 2657 6.878923 TGTCATACATTTGTTTACAGAGGGAG 59.121 38.462 0.00 0.00 0.00 4.30
1981 2659 7.630242 ATGTCATACATTTGTTTACAGAGGG 57.370 36.000 0.00 0.00 34.67 4.30
1995 2673 9.265901 GCAGTAGTGATCTAAAATGTCATACAT 57.734 33.333 0.42 0.00 41.31 2.29
1996 2674 7.710907 GGCAGTAGTGATCTAAAATGTCATACA 59.289 37.037 0.42 0.00 0.00 2.29
1997 2675 7.171678 GGGCAGTAGTGATCTAAAATGTCATAC 59.828 40.741 0.42 0.00 0.00 2.39
1998 2676 7.217200 GGGCAGTAGTGATCTAAAATGTCATA 58.783 38.462 0.42 0.00 0.00 2.15
1999 2677 6.058183 GGGCAGTAGTGATCTAAAATGTCAT 58.942 40.000 0.42 0.00 0.00 3.06
2000 2678 5.428253 GGGCAGTAGTGATCTAAAATGTCA 58.572 41.667 0.42 0.00 0.00 3.58
2001 2679 4.816925 GGGGCAGTAGTGATCTAAAATGTC 59.183 45.833 0.42 0.00 0.00 3.06
2002 2680 4.385310 GGGGGCAGTAGTGATCTAAAATGT 60.385 45.833 0.42 0.00 0.00 2.71
2003 2681 4.137543 GGGGGCAGTAGTGATCTAAAATG 58.862 47.826 0.42 0.00 0.00 2.32
2004 2682 4.439253 GGGGGCAGTAGTGATCTAAAAT 57.561 45.455 0.42 0.00 0.00 1.82
2005 2683 3.926058 GGGGGCAGTAGTGATCTAAAA 57.074 47.619 0.42 0.00 0.00 1.52
2022 2700 7.634671 AACGTCTTATATTTTGTTTAGGGGG 57.365 36.000 0.00 0.00 0.00 5.40
2023 2701 9.917129 AAAAACGTCTTATATTTTGTTTAGGGG 57.083 29.630 0.00 0.00 0.00 4.79
2069 2747 9.498307 CTCTGTAAACAAATGTAAGACGTTTTT 57.502 29.630 0.00 0.00 35.31 1.94
2070 2748 8.126700 CCTCTGTAAACAAATGTAAGACGTTTT 58.873 33.333 0.00 0.00 35.31 2.43
2071 2749 7.281549 ACCTCTGTAAACAAATGTAAGACGTTT 59.718 33.333 0.00 0.00 37.78 3.60
2072 2750 6.764560 ACCTCTGTAAACAAATGTAAGACGTT 59.235 34.615 0.00 0.00 0.00 3.99
2073 2751 6.285990 ACCTCTGTAAACAAATGTAAGACGT 58.714 36.000 0.00 0.00 0.00 4.34
2074 2752 6.780706 ACCTCTGTAAACAAATGTAAGACG 57.219 37.500 0.00 0.00 0.00 4.18
2075 2753 8.828688 ACTACCTCTGTAAACAAATGTAAGAC 57.171 34.615 0.00 0.00 0.00 3.01
2085 2763 9.953565 AGCATTTAATTACTACCTCTGTAAACA 57.046 29.630 0.00 0.00 34.20 2.83
2090 2768 8.769359 ACCTTAGCATTTAATTACTACCTCTGT 58.231 33.333 0.00 0.00 0.00 3.41
2164 2842 4.612264 TTCCCTGACCACTAAACTGTAC 57.388 45.455 0.00 0.00 0.00 2.90
2165 2843 4.564821 GCATTCCCTGACCACTAAACTGTA 60.565 45.833 0.00 0.00 0.00 2.74
2166 2844 3.810743 GCATTCCCTGACCACTAAACTGT 60.811 47.826 0.00 0.00 0.00 3.55
2167 2845 2.749621 GCATTCCCTGACCACTAAACTG 59.250 50.000 0.00 0.00 0.00 3.16
2177 2855 4.439289 GCATCTAAAAGTGCATTCCCTGAC 60.439 45.833 0.00 0.00 40.94 3.51
2179 2857 3.181483 GGCATCTAAAAGTGCATTCCCTG 60.181 47.826 0.00 0.00 43.00 4.45
2244 2922 8.773645 CGGTGAGATGATTTAAAAGCATACATA 58.226 33.333 6.84 0.00 37.69 2.29
2246 2924 6.821160 TCGGTGAGATGATTTAAAAGCATACA 59.179 34.615 6.84 7.71 37.69 2.29
2295 2973 9.836864 TTGATGATGTGCATATATAGGATTACC 57.163 33.333 0.00 0.00 37.34 2.85
2313 2991 9.107177 GGGTCTAGATAATATGCTTTGATGATG 57.893 37.037 0.00 0.00 0.00 3.07
2315 2993 7.039011 ACGGGTCTAGATAATATGCTTTGATGA 60.039 37.037 0.00 0.00 0.00 2.92
2340 3018 0.249615 TAGATGCGCCTCTCATGCAC 60.250 55.000 18.89 0.00 42.11 4.57
2347 3025 2.235016 CTCCTAAGTAGATGCGCCTCT 58.765 52.381 19.26 19.26 0.00 3.69
2349 3027 1.683917 CACTCCTAAGTAGATGCGCCT 59.316 52.381 4.18 0.00 33.25 5.52
2384 3067 4.085312 GCGTGCGTGTTGATGTTTATTTTT 60.085 37.500 0.00 0.00 0.00 1.94
2388 3071 1.533299 TGCGTGCGTGTTGATGTTTAT 59.467 42.857 0.00 0.00 0.00 1.40
2389 3072 0.938008 TGCGTGCGTGTTGATGTTTA 59.062 45.000 0.00 0.00 0.00 2.01
2392 3075 1.207339 CATGCGTGCGTGTTGATGT 59.793 52.632 5.89 0.00 0.00 3.06
2393 3076 2.147749 GCATGCGTGCGTGTTGATG 61.148 57.895 16.43 0.14 42.28 3.07
2394 3077 2.176546 GCATGCGTGCGTGTTGAT 59.823 55.556 16.43 0.00 42.28 2.57
2406 3103 3.879295 AGAATAGGTGTATGTGTGCATGC 59.121 43.478 11.82 11.82 38.06 4.06
2409 3106 5.527214 GCATTAGAATAGGTGTATGTGTGCA 59.473 40.000 0.00 0.00 0.00 4.57
2476 3173 7.359595 TGCGATTTCATAGTAATTTGGTATGC 58.640 34.615 0.00 0.00 0.00 3.14
2621 3654 5.105752 TGTCCTTGTTAAATTGTTGCACAC 58.894 37.500 0.00 0.00 0.00 3.82
2634 3667 4.274950 GTGCAACTAGCTTTGTCCTTGTTA 59.725 41.667 0.00 0.00 45.94 2.41
2638 3671 2.230660 GGTGCAACTAGCTTTGTCCTT 58.769 47.619 0.00 0.00 45.94 3.36
2641 3674 5.371115 TTTATGGTGCAACTAGCTTTGTC 57.629 39.130 2.04 0.00 45.94 3.18
2648 3681 4.818534 ATCGCATTTATGGTGCAACTAG 57.181 40.909 2.04 0.00 42.62 2.57
2651 3684 4.667262 TGTAATCGCATTTATGGTGCAAC 58.333 39.130 0.00 0.00 42.62 4.17
2700 3734 5.403466 GCTTGCTTTAGTTCATTGGAAGTTG 59.597 40.000 0.00 0.00 37.79 3.16
2701 3735 5.532557 GCTTGCTTTAGTTCATTGGAAGTT 58.467 37.500 0.00 0.00 37.79 2.66
2702 3736 4.320494 CGCTTGCTTTAGTTCATTGGAAGT 60.320 41.667 0.00 0.00 39.88 3.01
2703 3737 4.083324 TCGCTTGCTTTAGTTCATTGGAAG 60.083 41.667 0.00 0.00 32.62 3.46
2704 3738 3.818210 TCGCTTGCTTTAGTTCATTGGAA 59.182 39.130 0.00 0.00 0.00 3.53
2706 3740 3.829886 TCGCTTGCTTTAGTTCATTGG 57.170 42.857 0.00 0.00 0.00 3.16
2707 3741 3.605486 GCTTCGCTTGCTTTAGTTCATTG 59.395 43.478 0.00 0.00 0.00 2.82
2709 3743 2.813754 TGCTTCGCTTGCTTTAGTTCAT 59.186 40.909 0.00 0.00 0.00 2.57
2710 3744 2.032030 GTGCTTCGCTTGCTTTAGTTCA 60.032 45.455 0.00 0.00 0.00 3.18
2711 3745 2.032030 TGTGCTTCGCTTGCTTTAGTTC 60.032 45.455 0.00 0.00 0.00 3.01
2712 3746 1.946768 TGTGCTTCGCTTGCTTTAGTT 59.053 42.857 0.00 0.00 0.00 2.24
2713 3747 1.593196 TGTGCTTCGCTTGCTTTAGT 58.407 45.000 0.00 0.00 0.00 2.24
2714 3748 2.907910 ATGTGCTTCGCTTGCTTTAG 57.092 45.000 0.00 0.00 0.00 1.85
2770 3804 5.508200 AGAACCGAAAACAATTTGCTACA 57.492 34.783 0.00 0.00 0.00 2.74
2816 3852 5.856455 GTCATTTTGTTTTATCAGTGACGGG 59.144 40.000 0.00 0.00 0.00 5.28
2835 3871 8.736244 AGTAATACAAAGCCGTAAAATGTCATT 58.264 29.630 0.00 0.00 0.00 2.57
2836 3872 8.276252 AGTAATACAAAGCCGTAAAATGTCAT 57.724 30.769 0.00 0.00 0.00 3.06
2837 3873 7.148373 GGAGTAATACAAAGCCGTAAAATGTCA 60.148 37.037 0.00 0.00 0.00 3.58
2859 3899 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2860 3900 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2861 3901 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2862 3902 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2863 3903 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2864 3904 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2865 3905 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2866 3906 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2867 3907 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2868 3908 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2869 3909 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2870 3910 4.761739 TGAGCTCAAGACACTTATTTTGGG 59.238 41.667 15.67 0.00 0.00 4.12
2871 3911 5.947228 TGAGCTCAAGACACTTATTTTGG 57.053 39.130 15.67 0.00 0.00 3.28
2885 3925 6.061441 TCCAAAATAAGTGTCTTGAGCTCAA 58.939 36.000 26.87 26.87 0.00 3.02
2886 3926 5.620206 TCCAAAATAAGTGTCTTGAGCTCA 58.380 37.500 13.74 13.74 0.00 4.26
2887 3927 6.374578 GTTCCAAAATAAGTGTCTTGAGCTC 58.625 40.000 6.82 6.82 0.00 4.09
2888 3928 5.049405 CGTTCCAAAATAAGTGTCTTGAGCT 60.049 40.000 0.00 0.00 0.00 4.09
2889 3929 5.147162 CGTTCCAAAATAAGTGTCTTGAGC 58.853 41.667 0.00 0.00 0.00 4.26
2890 3930 5.468746 TCCGTTCCAAAATAAGTGTCTTGAG 59.531 40.000 0.00 0.00 0.00 3.02
2891 3931 5.369833 TCCGTTCCAAAATAAGTGTCTTGA 58.630 37.500 0.00 0.00 0.00 3.02
2892 3932 5.334879 CCTCCGTTCCAAAATAAGTGTCTTG 60.335 44.000 0.00 0.00 0.00 3.02
2893 3933 4.760204 CCTCCGTTCCAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
2894 3934 4.324267 CCTCCGTTCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
2895 3935 3.439129 CCCTCCGTTCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
2896 3936 3.073356 TCCCTCCGTTCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
2897 3937 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
2898 3938 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2899 3939 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2900 3940 5.502089 TTACTCCCTCCGTTCCAAAATAA 57.498 39.130 0.00 0.00 0.00 1.40
2901 3941 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
2902 3942 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
2903 3943 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
2904 3944 4.376225 AATTTACTCCCTCCGTTCCAAA 57.624 40.909 0.00 0.00 0.00 3.28
2905 3945 5.703730 ATAATTTACTCCCTCCGTTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
2906 3946 6.743208 GCATATAATTTACTCCCTCCGTTCCA 60.743 42.308 0.00 0.00 0.00 3.53
2907 3947 5.642491 GCATATAATTTACTCCCTCCGTTCC 59.358 44.000 0.00 0.00 0.00 3.62
2908 3948 6.465084 AGCATATAATTTACTCCCTCCGTTC 58.535 40.000 0.00 0.00 0.00 3.95
2909 3949 6.270231 AGAGCATATAATTTACTCCCTCCGTT 59.730 38.462 0.00 0.00 0.00 4.44
2910 3950 5.780793 AGAGCATATAATTTACTCCCTCCGT 59.219 40.000 0.00 0.00 0.00 4.69
2911 3951 6.287589 AGAGCATATAATTTACTCCCTCCG 57.712 41.667 0.00 0.00 0.00 4.63
2912 3952 8.368962 ACTAGAGCATATAATTTACTCCCTCC 57.631 38.462 0.00 0.00 0.00 4.30
2913 3953 9.250246 AGACTAGAGCATATAATTTACTCCCTC 57.750 37.037 0.00 0.00 0.00 4.30
2914 3954 9.030452 CAGACTAGAGCATATAATTTACTCCCT 57.970 37.037 0.00 0.00 0.00 4.20
2915 3955 8.808092 ACAGACTAGAGCATATAATTTACTCCC 58.192 37.037 0.00 0.00 0.00 4.30
3371 4517 9.745880 CGTTGTATAGGACATATAGTTCAAACT 57.254 33.333 0.46 0.46 39.39 2.66
3372 4518 8.975439 CCGTTGTATAGGACATATAGTTCAAAC 58.025 37.037 0.00 0.00 38.07 2.93
3373 4519 8.698210 ACCGTTGTATAGGACATATAGTTCAAA 58.302 33.333 0.00 0.00 38.07 2.69
3374 4520 8.241497 ACCGTTGTATAGGACATATAGTTCAA 57.759 34.615 0.00 0.00 38.07 2.69
3375 4521 7.828508 ACCGTTGTATAGGACATATAGTTCA 57.171 36.000 0.00 0.00 38.07 3.18
3376 4522 8.786898 TGTACCGTTGTATAGGACATATAGTTC 58.213 37.037 0.00 0.00 38.07 3.01
3377 4523 8.696043 TGTACCGTTGTATAGGACATATAGTT 57.304 34.615 0.00 0.00 38.07 2.24
3378 4524 8.159447 TCTGTACCGTTGTATAGGACATATAGT 58.841 37.037 0.00 0.00 38.07 2.12
3379 4525 8.557592 TCTGTACCGTTGTATAGGACATATAG 57.442 38.462 0.00 0.00 38.07 1.31
3387 4533 7.014038 AGGAATTACTCTGTACCGTTGTATAGG 59.986 40.741 0.00 0.00 36.95 2.57
3389 4535 7.886629 AGGAATTACTCTGTACCGTTGTATA 57.113 36.000 0.00 0.00 0.00 1.47
3396 4542 3.114065 GCGAAGGAATTACTCTGTACCG 58.886 50.000 0.00 0.00 0.00 4.02
3398 4544 6.534934 CAAAAGCGAAGGAATTACTCTGTAC 58.465 40.000 0.00 0.00 0.00 2.90
3401 4547 4.154918 AGCAAAAGCGAAGGAATTACTCTG 59.845 41.667 0.00 0.00 0.00 3.35
3444 4590 4.500603 TGTAAGACCTCGTGAGAAGTTC 57.499 45.455 0.00 0.00 41.32 3.01
3447 4593 4.238761 TGTTGTAAGACCTCGTGAGAAG 57.761 45.455 0.00 0.00 41.32 2.85
3537 4683 5.296780 CGATGAACCTAAATTGTGCTATGGT 59.703 40.000 0.00 0.00 0.00 3.55
3538 4684 5.751680 CGATGAACCTAAATTGTGCTATGG 58.248 41.667 0.00 0.00 0.00 2.74
3545 4691 3.857052 TCGAGCGATGAACCTAAATTGT 58.143 40.909 0.00 0.00 0.00 2.71
3577 4723 3.973472 ATGAAAAGGAGGATAACCCCC 57.027 47.619 0.00 0.00 36.73 5.40
3578 4724 5.607171 TCTCTATGAAAAGGAGGATAACCCC 59.393 44.000 0.00 0.00 36.73 4.95
3597 4743 8.816894 ACCTCAGTTGTGATATTTCTTTCTCTA 58.183 33.333 0.00 0.00 30.18 2.43
3601 4747 8.567948 TGAAACCTCAGTTGTGATATTTCTTTC 58.432 33.333 10.47 0.00 37.35 2.62
3650 4796 6.036735 CACTTATGTACAATACCGTTTCCTGG 59.963 42.308 0.00 0.00 0.00 4.45
3705 4851 6.547880 TGGGTCACATGCTAGTTTTTCTTTAA 59.452 34.615 0.00 0.00 0.00 1.52
3706 4852 6.065374 TGGGTCACATGCTAGTTTTTCTTTA 58.935 36.000 0.00 0.00 0.00 1.85
3710 4856 4.037446 TGTTGGGTCACATGCTAGTTTTTC 59.963 41.667 0.00 0.00 0.00 2.29
3712 4858 3.561143 TGTTGGGTCACATGCTAGTTTT 58.439 40.909 0.00 0.00 0.00 2.43
3713 4859 3.222173 TGTTGGGTCACATGCTAGTTT 57.778 42.857 0.00 0.00 0.00 2.66
3778 4924 3.617706 TGTGCTGTGCAAGTTTCATTTTG 59.382 39.130 0.00 0.00 41.47 2.44
3812 4958 7.863375 CGTTTTTCTCTCTCTCTCTAGTCAAAA 59.137 37.037 0.00 0.00 0.00 2.44
3819 4965 7.067251 GGGATAACGTTTTTCTCTCTCTCTCTA 59.933 40.741 5.91 0.00 0.00 2.43
3829 4975 7.662604 TGTAAAGAGGGATAACGTTTTTCTC 57.337 36.000 5.91 10.04 0.00 2.87
3900 5150 3.057315 CACCCTGGCAAATTACACAAGAG 60.057 47.826 0.00 0.00 0.00 2.85
3901 5151 2.890311 CACCCTGGCAAATTACACAAGA 59.110 45.455 0.00 0.00 0.00 3.02
3904 5154 1.626686 CCACCCTGGCAAATTACACA 58.373 50.000 0.00 0.00 0.00 3.72
3916 5166 3.669251 GCTATAGAGTAAGCCACCCTG 57.331 52.381 3.21 0.00 32.40 4.45
3923 5173 5.530712 ACGCTTTTAGGCTATAGAGTAAGC 58.469 41.667 3.21 9.13 38.03 3.09
3924 5174 5.852229 CGACGCTTTTAGGCTATAGAGTAAG 59.148 44.000 3.21 0.75 0.00 2.34
3925 5175 5.755813 CGACGCTTTTAGGCTATAGAGTAA 58.244 41.667 3.21 0.00 0.00 2.24
4071 5386 9.450807 GCACATCACATTAATTTCATAGGTTAC 57.549 33.333 0.00 0.00 0.00 2.50
4073 5388 8.297470 AGCACATCACATTAATTTCATAGGTT 57.703 30.769 0.00 0.00 0.00 3.50
4074 5389 7.557358 TGAGCACATCACATTAATTTCATAGGT 59.443 33.333 0.00 0.00 31.12 3.08
4226 5562 2.819595 GCATCCACGTCCACGCAT 60.820 61.111 0.00 0.00 44.43 4.73
4454 5790 3.155167 ATCCTTCTCCCGCCGGTC 61.155 66.667 1.90 0.00 0.00 4.79
4504 5856 5.509332 CGACCTCATCATCATCATCTTCTGT 60.509 44.000 0.00 0.00 0.00 3.41
4505 5857 4.924462 CGACCTCATCATCATCATCTTCTG 59.076 45.833 0.00 0.00 0.00 3.02
4509 5868 4.142425 CGATCGACCTCATCATCATCATCT 60.142 45.833 10.26 0.00 0.00 2.90
4531 5909 3.259064 CCCTGTATAAATCGCCCATACG 58.741 50.000 0.00 0.00 0.00 3.06
4533 5911 2.354303 CGCCCTGTATAAATCGCCCATA 60.354 50.000 0.00 0.00 0.00 2.74
4534 5912 1.610624 CGCCCTGTATAAATCGCCCAT 60.611 52.381 0.00 0.00 0.00 4.00
4538 5916 3.364964 CCATTTCGCCCTGTATAAATCGC 60.365 47.826 0.00 0.00 0.00 4.58
4539 5917 4.062293 TCCATTTCGCCCTGTATAAATCG 58.938 43.478 0.00 0.00 0.00 3.34
4541 5919 5.304686 TCTCCATTTCGCCCTGTATAAAT 57.695 39.130 0.00 0.00 0.00 1.40
4591 5969 1.578915 CAAAAATGTCGCACGCATAGC 59.421 47.619 1.51 0.00 0.00 2.97
4622 6000 3.384348 GGTTCAGGAGTACCGGCA 58.616 61.111 0.00 0.00 41.83 5.69
4626 6004 1.001633 TCTTTGCGGTTCAGGAGTACC 59.998 52.381 0.00 0.00 32.30 3.34
4632 6017 5.708948 TCATTTTAATCTTTGCGGTTCAGG 58.291 37.500 0.00 0.00 0.00 3.86
4640 6025 7.225341 GGATCCCAACATCATTTTAATCTTTGC 59.775 37.037 0.00 0.00 0.00 3.68
4673 6058 3.117657 CGTAGGATCTCCCAGCTGA 57.882 57.895 17.39 0.00 37.41 4.26
4687 6072 3.555956 CGGTTTCCATCTGATTTCCGTAG 59.444 47.826 0.00 0.00 33.39 3.51
4717 6102 1.265568 ATTACAACAGCGACGCTACG 58.734 50.000 24.00 14.01 36.40 3.51
4841 6234 2.487372 CAGAAGAGAAAAGCCTCCTTGC 59.513 50.000 0.00 0.00 33.76 4.01
4852 6245 6.139679 ACAATATTGGGACCAGAAGAGAAA 57.860 37.500 19.37 0.00 0.00 2.52
4853 6246 5.779241 ACAATATTGGGACCAGAAGAGAA 57.221 39.130 19.37 0.00 0.00 2.87
4878 6271 8.180267 CCTGTTGCATCTCTTAATTAAGAAGTG 58.820 37.037 24.41 23.54 41.37 3.16
4879 6272 7.885399 ACCTGTTGCATCTCTTAATTAAGAAGT 59.115 33.333 24.41 15.03 41.37 3.01
4880 6273 8.273780 ACCTGTTGCATCTCTTAATTAAGAAG 57.726 34.615 24.41 18.58 41.37 2.85
4881 6274 8.635765 AACCTGTTGCATCTCTTAATTAAGAA 57.364 30.769 24.41 16.85 41.37 2.52
4882 6275 9.905713 ATAACCTGTTGCATCTCTTAATTAAGA 57.094 29.630 23.26 23.26 39.82 2.10
4886 6279 9.247861 AGAAATAACCTGTTGCATCTCTTAATT 57.752 29.630 0.00 0.00 0.00 1.40
4887 6280 8.814038 AGAAATAACCTGTTGCATCTCTTAAT 57.186 30.769 0.00 0.00 0.00 1.40
4894 6287 5.300286 AGCCATAGAAATAACCTGTTGCATC 59.700 40.000 0.00 0.00 0.00 3.91
4921 6314 3.194542 CCATAGAAATCCCGGCACAAAAA 59.805 43.478 0.00 0.00 0.00 1.94
4923 6316 2.374184 CCATAGAAATCCCGGCACAAA 58.626 47.619 0.00 0.00 0.00 2.83
4926 6319 0.179018 AGCCATAGAAATCCCGGCAC 60.179 55.000 0.00 0.00 45.47 5.01
4929 6322 3.214696 AGAAAGCCATAGAAATCCCGG 57.785 47.619 0.00 0.00 0.00 5.73
4930 6323 6.884280 AAATAGAAAGCCATAGAAATCCCG 57.116 37.500 0.00 0.00 0.00 5.14
4931 6324 8.787852 CACTAAATAGAAAGCCATAGAAATCCC 58.212 37.037 0.00 0.00 0.00 3.85
4932 6325 9.343539 ACACTAAATAGAAAGCCATAGAAATCC 57.656 33.333 0.00 0.00 0.00 3.01
4937 6330 9.326413 GCTAAACACTAAATAGAAAGCCATAGA 57.674 33.333 0.00 0.00 0.00 1.98
4938 6331 9.331282 AGCTAAACACTAAATAGAAAGCCATAG 57.669 33.333 0.00 0.00 0.00 2.23
4939 6332 9.326413 GAGCTAAACACTAAATAGAAAGCCATA 57.674 33.333 0.00 0.00 0.00 2.74
4940 6333 7.829211 TGAGCTAAACACTAAATAGAAAGCCAT 59.171 33.333 0.00 0.00 0.00 4.40
4941 6334 7.165485 TGAGCTAAACACTAAATAGAAAGCCA 58.835 34.615 0.00 0.00 0.00 4.75
4942 6335 7.611213 TGAGCTAAACACTAAATAGAAAGCC 57.389 36.000 0.00 0.00 0.00 4.35
4943 6336 8.722394 ACTTGAGCTAAACACTAAATAGAAAGC 58.278 33.333 0.00 0.00 0.00 3.51
4964 6357 7.041644 GCACAGTGGTTACATAAAACTACTTGA 60.042 37.037 1.84 0.00 45.55 3.02
4984 6377 1.153524 TTGCCCCATCTTGCACAGT 59.846 52.632 0.00 0.00 37.18 3.55
4985 6378 1.180456 TGTTGCCCCATCTTGCACAG 61.180 55.000 0.00 0.00 37.18 3.66
4986 6379 1.152589 TGTTGCCCCATCTTGCACA 60.153 52.632 0.00 0.00 37.18 4.57
4989 6382 0.609662 ATTGTGTTGCCCCATCTTGC 59.390 50.000 0.00 0.00 0.00 4.01
4991 6384 1.203162 TCCATTGTGTTGCCCCATCTT 60.203 47.619 0.00 0.00 0.00 2.40
4992 6385 0.409092 TCCATTGTGTTGCCCCATCT 59.591 50.000 0.00 0.00 0.00 2.90
4993 6386 1.265236 TTCCATTGTGTTGCCCCATC 58.735 50.000 0.00 0.00 0.00 3.51
4997 6395 5.546526 TCTTTATTTTCCATTGTGTTGCCC 58.453 37.500 0.00 0.00 0.00 5.36
5019 6417 8.514594 TCATGTCTTGGATTCAACAAATACTTC 58.485 33.333 0.00 0.00 0.00 3.01
5058 6466 9.687717 GGATGCAAAATAATGTTTTTATTCGTG 57.312 29.630 0.00 0.00 0.00 4.35
5059 6467 9.651913 AGGATGCAAAATAATGTTTTTATTCGT 57.348 25.926 0.00 0.00 0.00 3.85
5060 6468 9.904647 CAGGATGCAAAATAATGTTTTTATTCG 57.095 29.630 0.00 0.00 0.00 3.34
5066 6479 5.876460 GGCTCAGGATGCAAAATAATGTTTT 59.124 36.000 0.00 0.00 34.76 2.43
5073 6486 5.480642 TTTTTGGCTCAGGATGCAAAATA 57.519 34.783 0.00 0.00 33.90 1.40
5092 6505 4.102649 GCAACTAGCGACAAAGTGTTTTT 58.897 39.130 0.00 0.00 0.00 1.94
5093 6506 3.691498 GCAACTAGCGACAAAGTGTTTT 58.309 40.909 0.00 0.00 0.00 2.43
5094 6507 3.334272 GCAACTAGCGACAAAGTGTTT 57.666 42.857 0.00 0.00 0.00 2.83
5106 6519 2.351726 CCCAATCTAACGTGCAACTAGC 59.648 50.000 0.00 0.00 45.96 3.42
5107 6520 2.351726 GCCCAATCTAACGTGCAACTAG 59.648 50.000 0.00 0.00 31.75 2.57
5108 6521 2.352388 GCCCAATCTAACGTGCAACTA 58.648 47.619 0.00 0.00 31.75 2.24
5109 6522 1.165270 GCCCAATCTAACGTGCAACT 58.835 50.000 0.00 0.00 31.75 3.16
5110 6523 0.179200 CGCCCAATCTAACGTGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
5111 6524 1.302383 CCGCCCAATCTAACGTGCAA 61.302 55.000 0.00 0.00 0.00 4.08
5112 6525 1.743623 CCGCCCAATCTAACGTGCA 60.744 57.895 0.00 0.00 0.00 4.57
5113 6526 3.098555 CCGCCCAATCTAACGTGC 58.901 61.111 0.00 0.00 0.00 5.34
5114 6527 0.179094 TAGCCGCCCAATCTAACGTG 60.179 55.000 0.00 0.00 0.00 4.49
5115 6528 0.104304 CTAGCCGCCCAATCTAACGT 59.896 55.000 0.00 0.00 0.00 3.99
5116 6529 0.104304 ACTAGCCGCCCAATCTAACG 59.896 55.000 0.00 0.00 0.00 3.18
5117 6530 1.540580 GGACTAGCCGCCCAATCTAAC 60.541 57.143 0.00 0.00 0.00 2.34
5118 6531 0.756903 GGACTAGCCGCCCAATCTAA 59.243 55.000 0.00 0.00 0.00 2.10
5119 6532 1.119574 GGGACTAGCCGCCCAATCTA 61.120 60.000 10.25 0.00 44.07 1.98
5120 6533 2.444256 GGGACTAGCCGCCCAATCT 61.444 63.158 10.25 0.00 44.07 2.40
5121 6534 2.111251 GGGACTAGCCGCCCAATC 59.889 66.667 10.25 0.00 44.07 2.67
5122 6535 3.489513 GGGGACTAGCCGCCCAAT 61.490 66.667 15.50 0.00 46.57 3.16
5128 6541 3.095347 GCCAGAAGGGGACTAGCCG 62.095 68.421 0.00 0.00 42.68 5.52
5129 6542 2.911928 GCCAGAAGGGGACTAGCC 59.088 66.667 0.00 0.00 42.68 3.93
5137 6550 3.343617 TGAAAAGATTACGCCAGAAGGG 58.656 45.455 0.00 0.00 40.85 3.95
5138 6551 5.123820 TCATTGAAAAGATTACGCCAGAAGG 59.876 40.000 0.00 0.00 38.23 3.46
5139 6552 6.182039 TCATTGAAAAGATTACGCCAGAAG 57.818 37.500 0.00 0.00 0.00 2.85
5140 6553 6.599244 AGATCATTGAAAAGATTACGCCAGAA 59.401 34.615 0.00 0.00 0.00 3.02
5141 6554 6.115446 AGATCATTGAAAAGATTACGCCAGA 58.885 36.000 0.00 0.00 0.00 3.86
5142 6555 6.369059 AGATCATTGAAAAGATTACGCCAG 57.631 37.500 0.00 0.00 0.00 4.85
5143 6556 6.599244 AGAAGATCATTGAAAAGATTACGCCA 59.401 34.615 0.00 0.00 0.00 5.69
5144 6557 7.020914 AGAAGATCATTGAAAAGATTACGCC 57.979 36.000 0.00 0.00 0.00 5.68
5145 6558 9.035607 TCTAGAAGATCATTGAAAAGATTACGC 57.964 33.333 0.00 0.00 0.00 4.42
5148 6561 9.534565 CCGTCTAGAAGATCATTGAAAAGATTA 57.465 33.333 7.30 0.00 0.00 1.75
5149 6562 8.260818 TCCGTCTAGAAGATCATTGAAAAGATT 58.739 33.333 7.30 0.00 0.00 2.40
5150 6563 7.786030 TCCGTCTAGAAGATCATTGAAAAGAT 58.214 34.615 7.30 0.00 0.00 2.40
5151 6564 7.122799 TCTCCGTCTAGAAGATCATTGAAAAGA 59.877 37.037 7.30 0.00 0.00 2.52
5152 6565 7.261325 TCTCCGTCTAGAAGATCATTGAAAAG 58.739 38.462 7.30 0.00 0.00 2.27
5153 6566 7.170393 TCTCCGTCTAGAAGATCATTGAAAA 57.830 36.000 7.30 0.00 0.00 2.29
5154 6567 6.775594 TCTCCGTCTAGAAGATCATTGAAA 57.224 37.500 7.30 0.00 0.00 2.69
5155 6568 6.293680 CGATCTCCGTCTAGAAGATCATTGAA 60.294 42.308 23.44 1.68 36.21 2.69
5156 6569 5.180304 CGATCTCCGTCTAGAAGATCATTGA 59.820 44.000 23.44 7.61 36.21 2.57
5157 6570 5.389778 CGATCTCCGTCTAGAAGATCATTG 58.610 45.833 23.44 10.65 36.21 2.82
5158 6571 5.621197 CGATCTCCGTCTAGAAGATCATT 57.379 43.478 23.44 0.30 36.21 2.57
5172 6585 0.740868 ACAATGCACCACGATCTCCG 60.741 55.000 0.00 0.00 45.44 4.63
5173 6586 1.131126 CAACAATGCACCACGATCTCC 59.869 52.381 0.00 0.00 0.00 3.71
5174 6587 2.532531 CAACAATGCACCACGATCTC 57.467 50.000 0.00 0.00 0.00 2.75
5249 6662 5.235305 ACAAGTTGTTGTTGCTACAAGAG 57.765 39.130 14.10 4.09 45.00 2.85
5259 6672 6.038271 GGAACAGTGAGATACAAGTTGTTGTT 59.962 38.462 14.90 15.63 45.00 2.83
5271 6684 9.166173 CATAAATGACAAAGGAACAGTGAGATA 57.834 33.333 0.00 0.00 0.00 1.98
5279 6692 6.983307 CCAACAACATAAATGACAAAGGAACA 59.017 34.615 0.00 0.00 0.00 3.18
5280 6693 6.073819 GCCAACAACATAAATGACAAAGGAAC 60.074 38.462 0.00 0.00 0.00 3.62
5328 6994 6.238731 CGTGCCTCATGAACAATACCATAATT 60.239 38.462 0.00 0.00 0.00 1.40
5340 7007 0.792640 CACAGTCGTGCCTCATGAAC 59.207 55.000 0.00 0.00 36.06 3.18
5352 7019 0.457851 CTCTTCCCTAGCCACAGTCG 59.542 60.000 0.00 0.00 0.00 4.18
5355 7022 1.341156 CCCCTCTTCCCTAGCCACAG 61.341 65.000 0.00 0.00 0.00 3.66
5358 7025 1.599809 TAGCCCCTCTTCCCTAGCCA 61.600 60.000 0.00 0.00 0.00 4.75
5359 7026 1.122632 GTAGCCCCTCTTCCCTAGCC 61.123 65.000 0.00 0.00 0.00 3.93
5362 7029 1.315903 TGAGTAGCCCCTCTTCCCTA 58.684 55.000 2.33 0.00 32.50 3.53
5421 7088 9.567776 TCTACAAGAACAAACATGGAAATAAGA 57.432 29.630 0.00 0.00 0.00 2.10
5425 7092 8.408043 TGATCTACAAGAACAAACATGGAAAT 57.592 30.769 0.00 0.00 0.00 2.17
5426 7093 7.815840 TGATCTACAAGAACAAACATGGAAA 57.184 32.000 0.00 0.00 0.00 3.13
5429 7096 6.583806 GCTTTGATCTACAAGAACAAACATGG 59.416 38.462 7.91 2.00 40.51 3.66
5437 7105 4.092091 CACGGAGCTTTGATCTACAAGAAC 59.908 45.833 0.00 0.00 39.77 3.01
5470 7138 1.473278 AGGGAGAACGAGAAACTAGCG 59.527 52.381 0.00 0.00 0.00 4.26
5471 7139 2.756207 AGAGGGAGAACGAGAAACTAGC 59.244 50.000 0.00 0.00 0.00 3.42
5472 7140 4.266714 AGAGAGGGAGAACGAGAAACTAG 58.733 47.826 0.00 0.00 0.00 2.57
5479 7147 4.277423 GGATTTCTAGAGAGGGAGAACGAG 59.723 50.000 0.00 0.00 31.47 4.18
5482 7150 6.607019 TCTAGGATTTCTAGAGAGGGAGAAC 58.393 44.000 0.00 0.00 46.88 3.01
5493 7161 5.392595 GCTGACGGCTATCTAGGATTTCTAG 60.393 48.000 0.00 0.00 41.12 2.43
5494 7162 4.459685 GCTGACGGCTATCTAGGATTTCTA 59.540 45.833 0.00 0.00 38.06 2.10
5496 7164 3.005897 TGCTGACGGCTATCTAGGATTTC 59.994 47.826 7.96 0.00 42.39 2.17
5500 7168 1.133761 AGTGCTGACGGCTATCTAGGA 60.134 52.381 7.96 0.00 42.39 2.94
5513 7181 2.039624 GAGGGAGGGGAGTGCTGA 59.960 66.667 0.00 0.00 0.00 4.26
5534 7202 2.716217 AGAGTAGATTTGTGGCCTTGC 58.284 47.619 3.32 0.00 0.00 4.01
5544 7212 3.386402 GCAGGTGGAGCTAGAGTAGATTT 59.614 47.826 0.00 0.00 0.00 2.17
5545 7213 2.962421 GCAGGTGGAGCTAGAGTAGATT 59.038 50.000 0.00 0.00 0.00 2.40
5548 7216 1.036707 GGCAGGTGGAGCTAGAGTAG 58.963 60.000 0.00 0.00 0.00 2.57
5549 7217 0.752009 CGGCAGGTGGAGCTAGAGTA 60.752 60.000 0.00 0.00 0.00 2.59
5554 7222 3.461773 GAGCGGCAGGTGGAGCTA 61.462 66.667 1.45 0.00 40.39 3.32
5573 7241 2.337879 ATCACCACAGTGCCACCGTT 62.338 55.000 0.00 0.00 44.16 4.44
5578 7246 0.322726 CCATCATCACCACAGTGCCA 60.323 55.000 0.00 0.00 44.16 4.92
5579 7247 0.035152 TCCATCATCACCACAGTGCC 60.035 55.000 0.00 0.00 44.16 5.01
5582 7250 3.118261 GGTACATCCATCATCACCACAGT 60.118 47.826 0.00 0.00 35.97 3.55
5583 7251 3.135348 AGGTACATCCATCATCACCACAG 59.865 47.826 0.00 0.00 39.02 3.66
5591 7259 5.202765 TGATTTGCAAGGTACATCCATCAT 58.797 37.500 0.00 0.00 39.02 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.