Multiple sequence alignment - TraesCS3D01G143400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G143400 chr3D 100.000 2372 0 0 1 2372 105900408 105898037 0.000000e+00 4381
1 TraesCS3D01G143400 chr3D 83.804 957 132 14 677 1614 599328961 599329913 0.000000e+00 887
2 TraesCS3D01G143400 chr3D 83.592 579 55 19 124 676 106743423 106742859 7.560000e-140 507
3 TraesCS3D01G143400 chr3D 76.389 360 58 19 1757 2105 599329987 599330330 4.050000e-38 169
4 TraesCS3D01G143400 chr3A 94.293 1542 52 6 677 2206 23147973 23149490 0.000000e+00 2327
5 TraesCS3D01G143400 chr3A 92.737 179 10 2 2194 2370 23153725 23153902 3.030000e-64 255
6 TraesCS3D01G143400 chr2B 91.582 1473 89 12 677 2122 717883115 717884579 0.000000e+00 2001
7 TraesCS3D01G143400 chr2B 92.262 168 11 1 2205 2370 717887250 717887417 1.100000e-58 237
8 TraesCS3D01G143400 chr2B 93.827 81 5 0 2126 2206 717884547 717884627 3.200000e-24 122
9 TraesCS3D01G143400 chr1B 91.502 1471 95 10 677 2122 448411159 448412624 0.000000e+00 1997
10 TraesCS3D01G143400 chr1B 89.062 128 11 2 2246 2370 448416103 448416230 3.160000e-34 156
11 TraesCS3D01G143400 chr1B 92.754 69 5 0 2138 2206 448412604 448412672 1.500000e-17 100
12 TraesCS3D01G143400 chr7D 84.013 957 129 12 677 1614 549946252 549947203 0.000000e+00 898
13 TraesCS3D01G143400 chr6D 84.013 957 130 14 677 1614 55879442 55878490 0.000000e+00 898
14 TraesCS3D01G143400 chr7A 83.600 939 89 25 1224 2132 721736509 721735606 0.000000e+00 821
15 TraesCS3D01G143400 chr7A 85.217 230 30 4 1980 2206 721735798 721735570 1.420000e-57 233
16 TraesCS3D01G143400 chr5A 83.280 939 92 25 1224 2132 104242525 104241622 0.000000e+00 804
17 TraesCS3D01G143400 chr5A 80.118 1021 150 32 661 1639 650781864 650780855 0.000000e+00 712
18 TraesCS3D01G143400 chr5A 83.237 173 14 12 2205 2367 593452784 593452951 6.830000e-31 145
19 TraesCS3D01G143400 chr5A 89.362 94 7 3 2067 2158 104241800 104241708 5.360000e-22 115
20 TraesCS3D01G143400 chr6A 82.712 885 93 22 1224 2065 19284048 19284915 0.000000e+00 732
21 TraesCS3D01G143400 chr6A 89.474 95 5 5 2067 2158 19284771 19284863 5.360000e-22 115
22 TraesCS3D01G143400 chr1D 82.888 824 96 28 677 1459 474361499 474362318 0.000000e+00 699
23 TraesCS3D01G143400 chr4D 82.260 823 103 25 677 1459 81317971 81318790 0.000000e+00 671
24 TraesCS3D01G143400 chr7B 82.863 461 70 9 677 1131 39987226 39987683 2.840000e-109 405
25 TraesCS3D01G143400 chr6B 90.820 305 14 8 375 676 43791631 43791924 1.710000e-106 396
26 TraesCS3D01G143400 chr3B 92.989 271 16 2 406 676 157759341 157759074 2.210000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G143400 chr3D 105898037 105900408 2371 True 4381.000000 4381 100.0000 1 2372 1 chr3D.!!$R1 2371
1 TraesCS3D01G143400 chr3D 599328961 599330330 1369 False 528.000000 887 80.0965 677 2105 2 chr3D.!!$F1 1428
2 TraesCS3D01G143400 chr3D 106742859 106743423 564 True 507.000000 507 83.5920 124 676 1 chr3D.!!$R2 552
3 TraesCS3D01G143400 chr3A 23147973 23149490 1517 False 2327.000000 2327 94.2930 677 2206 1 chr3A.!!$F1 1529
4 TraesCS3D01G143400 chr2B 717883115 717887417 4302 False 786.666667 2001 92.5570 677 2370 3 chr2B.!!$F1 1693
5 TraesCS3D01G143400 chr1B 448411159 448416230 5071 False 751.000000 1997 91.1060 677 2370 3 chr1B.!!$F1 1693
6 TraesCS3D01G143400 chr7D 549946252 549947203 951 False 898.000000 898 84.0130 677 1614 1 chr7D.!!$F1 937
7 TraesCS3D01G143400 chr6D 55878490 55879442 952 True 898.000000 898 84.0130 677 1614 1 chr6D.!!$R1 937
8 TraesCS3D01G143400 chr7A 721735570 721736509 939 True 527.000000 821 84.4085 1224 2206 2 chr7A.!!$R1 982
9 TraesCS3D01G143400 chr5A 650780855 650781864 1009 True 712.000000 712 80.1180 661 1639 1 chr5A.!!$R1 978
10 TraesCS3D01G143400 chr5A 104241622 104242525 903 True 459.500000 804 86.3210 1224 2158 2 chr5A.!!$R2 934
11 TraesCS3D01G143400 chr6A 19284048 19284915 867 False 423.500000 732 86.0930 1224 2158 2 chr6A.!!$F1 934
12 TraesCS3D01G143400 chr1D 474361499 474362318 819 False 699.000000 699 82.8880 677 1459 1 chr1D.!!$F1 782
13 TraesCS3D01G143400 chr4D 81317971 81318790 819 False 671.000000 671 82.2600 677 1459 1 chr4D.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.033504 ACCGTGTTGGAGTAGCTGTG 59.966 55.0 0.0 0.0 42.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1534 0.330604 ATTGATGCACCAGCTCCACT 59.669 50.0 0.0 0.0 42.74 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.430862 GCAGCGATTCCACGGCAA 61.431 61.111 0.00 0.00 0.00 4.52
20 21 2.480555 CAGCGATTCCACGGCAAC 59.519 61.111 0.00 0.00 0.00 4.17
21 22 2.034879 CAGCGATTCCACGGCAACT 61.035 57.895 0.00 0.00 0.00 3.16
22 23 2.034879 AGCGATTCCACGGCAACTG 61.035 57.895 0.00 0.00 0.00 3.16
23 24 2.032634 GCGATTCCACGGCAACTGA 61.033 57.895 0.00 0.00 0.00 3.41
24 25 1.369091 GCGATTCCACGGCAACTGAT 61.369 55.000 0.00 0.00 0.00 2.90
25 26 1.086696 CGATTCCACGGCAACTGATT 58.913 50.000 0.00 0.00 0.00 2.57
26 27 1.202065 CGATTCCACGGCAACTGATTG 60.202 52.381 0.00 0.00 38.99 2.67
27 28 1.133025 GATTCCACGGCAACTGATTGG 59.867 52.381 0.00 0.00 36.23 3.16
28 29 0.109532 TTCCACGGCAACTGATTGGA 59.890 50.000 0.00 0.00 36.23 3.53
29 30 0.605319 TCCACGGCAACTGATTGGAC 60.605 55.000 0.00 0.00 36.23 4.02
30 31 1.497278 CACGGCAACTGATTGGACG 59.503 57.895 0.00 0.00 36.23 4.79
31 32 0.948623 CACGGCAACTGATTGGACGA 60.949 55.000 0.00 0.00 36.23 4.20
32 33 0.949105 ACGGCAACTGATTGGACGAC 60.949 55.000 0.00 0.00 36.23 4.34
33 34 1.787847 GGCAACTGATTGGACGACG 59.212 57.895 0.00 0.00 36.23 5.12
34 35 1.635663 GGCAACTGATTGGACGACGG 61.636 60.000 0.00 0.00 36.23 4.79
35 36 1.787847 CAACTGATTGGACGACGGC 59.212 57.895 0.00 0.00 31.63 5.68
36 37 1.736645 AACTGATTGGACGACGGCG 60.737 57.895 10.39 10.39 44.79 6.46
46 47 4.678396 CGACGGCGTAGGTCTTAC 57.322 61.111 14.74 0.00 32.24 2.34
47 48 1.063166 CGACGGCGTAGGTCTTACC 59.937 63.158 14.74 0.00 38.99 2.85
48 49 1.063166 GACGGCGTAGGTCTTACCG 59.937 63.158 14.74 0.00 44.90 4.02
49 50 2.410469 CGGCGTAGGTCTTACCGG 59.590 66.667 0.00 0.00 44.90 5.28
50 51 2.114670 CGGCGTAGGTCTTACCGGA 61.115 63.158 9.46 0.00 44.90 5.14
51 52 1.435105 GGCGTAGGTCTTACCGGAC 59.565 63.158 9.46 0.00 44.90 4.79
52 53 1.315257 GGCGTAGGTCTTACCGGACA 61.315 60.000 9.46 0.00 44.90 4.02
53 54 0.100146 GCGTAGGTCTTACCGGACAG 59.900 60.000 9.46 2.81 44.90 3.51
54 55 0.737219 CGTAGGTCTTACCGGACAGG 59.263 60.000 9.46 0.00 44.90 4.00
55 56 1.109609 GTAGGTCTTACCGGACAGGG 58.890 60.000 9.46 0.00 44.90 4.45
56 57 0.685458 TAGGTCTTACCGGACAGGGC 60.685 60.000 9.46 0.00 44.90 5.19
57 58 2.183555 GTCTTACCGGACAGGGCG 59.816 66.667 9.46 0.00 46.96 6.13
58 59 3.072468 TCTTACCGGACAGGGCGG 61.072 66.667 9.46 0.00 46.96 6.13
59 60 4.157120 CTTACCGGACAGGGCGGG 62.157 72.222 9.46 0.00 46.96 6.13
80 81 4.759096 GCGTGCGTGGTTGCCATC 62.759 66.667 0.00 0.00 35.28 3.51
81 82 3.353029 CGTGCGTGGTTGCCATCA 61.353 61.111 0.00 0.00 35.28 3.07
82 83 2.562912 GTGCGTGGTTGCCATCAG 59.437 61.111 0.00 0.00 35.28 2.90
83 84 3.364441 TGCGTGGTTGCCATCAGC 61.364 61.111 0.00 0.00 44.14 4.26
84 85 4.120331 GCGTGGTTGCCATCAGCC 62.120 66.667 0.00 0.00 43.11 4.85
85 86 3.803082 CGTGGTTGCCATCAGCCG 61.803 66.667 0.00 0.00 45.42 5.52
86 87 2.672996 GTGGTTGCCATCAGCCGT 60.673 61.111 0.00 0.00 45.42 5.68
87 88 2.359850 TGGTTGCCATCAGCCGTC 60.360 61.111 0.00 0.00 45.42 4.79
88 89 2.359850 GGTTGCCATCAGCCGTCA 60.360 61.111 0.00 0.00 42.71 4.35
89 90 2.401766 GGTTGCCATCAGCCGTCAG 61.402 63.158 0.00 0.00 42.71 3.51
90 91 1.375908 GTTGCCATCAGCCGTCAGA 60.376 57.895 0.00 0.00 42.71 3.27
91 92 0.745845 GTTGCCATCAGCCGTCAGAT 60.746 55.000 0.00 0.00 42.71 2.90
92 93 0.462581 TTGCCATCAGCCGTCAGATC 60.463 55.000 0.00 0.00 42.71 2.75
93 94 1.596477 GCCATCAGCCGTCAGATCC 60.596 63.158 0.00 0.00 34.35 3.36
94 95 1.070445 CCATCAGCCGTCAGATCCC 59.930 63.158 0.00 0.00 0.00 3.85
95 96 1.406065 CCATCAGCCGTCAGATCCCT 61.406 60.000 0.00 0.00 0.00 4.20
96 97 0.249784 CATCAGCCGTCAGATCCCTG 60.250 60.000 0.00 0.00 41.74 4.45
97 98 0.397675 ATCAGCCGTCAGATCCCTGA 60.398 55.000 0.00 0.00 46.48 3.86
110 111 7.032598 TCAGATCCCTGATTTAGGTTTTTCT 57.967 36.000 0.00 0.00 45.80 2.52
111 112 8.158025 TCAGATCCCTGATTTAGGTTTTTCTA 57.842 34.615 0.00 0.00 45.80 2.10
112 113 8.611257 TCAGATCCCTGATTTAGGTTTTTCTAA 58.389 33.333 0.00 0.00 45.80 2.10
113 114 9.413734 CAGATCCCTGATTTAGGTTTTTCTAAT 57.586 33.333 0.00 0.00 45.80 1.73
114 115 9.997172 AGATCCCTGATTTAGGTTTTTCTAATT 57.003 29.630 0.00 0.00 45.80 1.40
177 178 9.309516 GTAATATGTCGATCTTTGTCTGGTTTA 57.690 33.333 0.00 0.00 0.00 2.01
180 181 4.748102 TGTCGATCTTTGTCTGGTTTACAC 59.252 41.667 0.00 0.00 0.00 2.90
185 186 6.510478 CGATCTTTGTCTGGTTTACACGAAAA 60.510 38.462 0.00 0.00 0.00 2.29
187 188 7.090953 TCTTTGTCTGGTTTACACGAAAATT 57.909 32.000 0.00 0.00 0.00 1.82
197 198 8.818057 TGGTTTACACGAAAATTATTTGGTTTG 58.182 29.630 0.00 0.00 35.59 2.93
212 213 7.754069 ATTTGGTTTGTATGTAATTCATGCG 57.246 32.000 0.00 0.00 41.05 4.73
213 214 5.242069 TGGTTTGTATGTAATTCATGCGG 57.758 39.130 0.00 0.00 41.05 5.69
214 215 4.702612 TGGTTTGTATGTAATTCATGCGGT 59.297 37.500 0.00 0.00 41.05 5.68
215 216 5.184096 TGGTTTGTATGTAATTCATGCGGTT 59.816 36.000 0.00 0.00 41.05 4.44
216 217 6.096695 GGTTTGTATGTAATTCATGCGGTTT 58.903 36.000 0.00 0.00 41.05 3.27
217 218 6.034470 GGTTTGTATGTAATTCATGCGGTTTG 59.966 38.462 0.00 0.00 41.05 2.93
218 219 5.888691 TGTATGTAATTCATGCGGTTTGT 57.111 34.783 0.00 0.00 41.05 2.83
219 220 6.260870 TGTATGTAATTCATGCGGTTTGTT 57.739 33.333 0.00 0.00 41.05 2.83
220 221 6.318628 TGTATGTAATTCATGCGGTTTGTTC 58.681 36.000 0.00 0.00 41.05 3.18
221 222 4.837896 TGTAATTCATGCGGTTTGTTCA 57.162 36.364 0.00 0.00 0.00 3.18
222 223 5.188327 TGTAATTCATGCGGTTTGTTCAA 57.812 34.783 0.00 0.00 0.00 2.69
223 224 5.777802 TGTAATTCATGCGGTTTGTTCAAT 58.222 33.333 0.00 0.00 0.00 2.57
224 225 5.861251 TGTAATTCATGCGGTTTGTTCAATC 59.139 36.000 0.00 0.00 0.00 2.67
225 226 4.789012 ATTCATGCGGTTTGTTCAATCT 57.211 36.364 0.00 0.00 0.00 2.40
226 227 5.895636 ATTCATGCGGTTTGTTCAATCTA 57.104 34.783 0.00 0.00 0.00 1.98
227 228 4.678509 TCATGCGGTTTGTTCAATCTAC 57.321 40.909 0.00 0.00 0.00 2.59
228 229 3.124466 TCATGCGGTTTGTTCAATCTACG 59.876 43.478 0.00 0.00 0.00 3.51
229 230 2.485903 TGCGGTTTGTTCAATCTACGT 58.514 42.857 0.00 0.00 0.00 3.57
230 231 2.873472 TGCGGTTTGTTCAATCTACGTT 59.127 40.909 0.00 0.00 0.00 3.99
231 232 3.223157 GCGGTTTGTTCAATCTACGTTG 58.777 45.455 0.00 0.00 0.00 4.10
232 233 3.805823 CGGTTTGTTCAATCTACGTTGG 58.194 45.455 0.00 0.00 0.00 3.77
233 234 3.495377 CGGTTTGTTCAATCTACGTTGGA 59.505 43.478 0.00 0.00 0.00 3.53
234 235 4.609783 CGGTTTGTTCAATCTACGTTGGAC 60.610 45.833 0.00 0.00 37.96 4.02
235 236 4.273969 GGTTTGTTCAATCTACGTTGGACA 59.726 41.667 0.00 0.00 43.90 4.02
236 237 5.202640 GTTTGTTCAATCTACGTTGGACAC 58.797 41.667 0.00 0.00 44.93 3.67
244 245 2.127270 CGTTGGACACGTGCATGC 60.127 61.111 17.22 11.82 44.49 4.06
245 246 2.891221 CGTTGGACACGTGCATGCA 61.891 57.895 18.46 18.46 44.49 3.96
246 247 1.370414 GTTGGACACGTGCATGCAC 60.370 57.895 35.76 35.76 43.01 4.57
254 255 2.126888 GTGCATGCACGTTTCGGG 60.127 61.111 33.20 0.00 37.19 5.14
261 262 3.722295 CACGTTTCGGGCATGCGT 61.722 61.111 12.44 0.00 36.13 5.24
262 263 2.975799 ACGTTTCGGGCATGCGTT 60.976 55.556 12.44 0.00 31.37 4.84
263 264 2.501650 CGTTTCGGGCATGCGTTG 60.502 61.111 12.44 3.72 0.00 4.10
264 265 2.126502 GTTTCGGGCATGCGTTGG 60.127 61.111 12.44 0.37 0.00 3.77
265 266 2.281831 TTTCGGGCATGCGTTGGA 60.282 55.556 12.44 3.01 0.00 3.53
266 267 1.677300 TTTCGGGCATGCGTTGGAT 60.677 52.632 12.44 0.00 0.00 3.41
267 268 1.932011 TTTCGGGCATGCGTTGGATG 61.932 55.000 12.44 0.00 0.00 3.51
268 269 3.891400 CGGGCATGCGTTGGATGG 61.891 66.667 12.44 0.00 0.00 3.51
269 270 4.211502 GGGCATGCGTTGGATGGC 62.212 66.667 12.44 14.91 43.80 4.40
270 271 4.211502 GGCATGCGTTGGATGGCC 62.212 66.667 12.44 0.00 39.80 5.36
271 272 4.557605 GCATGCGTTGGATGGCCG 62.558 66.667 0.00 0.00 36.79 6.13
272 273 3.891400 CATGCGTTGGATGGCCGG 61.891 66.667 0.00 0.00 36.79 6.13
273 274 4.424711 ATGCGTTGGATGGCCGGT 62.425 61.111 1.90 0.00 36.79 5.28
274 275 3.936772 ATGCGTTGGATGGCCGGTT 62.937 57.895 1.90 0.00 36.79 4.44
275 276 3.810896 GCGTTGGATGGCCGGTTC 61.811 66.667 1.90 0.00 36.79 3.62
276 277 3.131478 CGTTGGATGGCCGGTTCC 61.131 66.667 1.90 11.33 36.79 3.62
277 278 2.355115 GTTGGATGGCCGGTTCCT 59.645 61.111 17.31 0.00 36.79 3.36
278 279 2.046285 GTTGGATGGCCGGTTCCTG 61.046 63.158 17.31 0.00 36.79 3.86
279 280 2.534396 TTGGATGGCCGGTTCCTGT 61.534 57.895 17.31 0.30 36.79 4.00
280 281 1.202099 TTGGATGGCCGGTTCCTGTA 61.202 55.000 17.31 3.87 36.79 2.74
281 282 0.986019 TGGATGGCCGGTTCCTGTAT 60.986 55.000 17.31 0.00 36.79 2.29
282 283 0.250338 GGATGGCCGGTTCCTGTATC 60.250 60.000 1.90 0.00 0.00 2.24
283 284 0.468226 GATGGCCGGTTCCTGTATCA 59.532 55.000 1.90 0.00 0.00 2.15
284 285 1.072331 GATGGCCGGTTCCTGTATCAT 59.928 52.381 1.90 0.00 0.00 2.45
285 286 0.180171 TGGCCGGTTCCTGTATCATG 59.820 55.000 1.90 0.00 0.00 3.07
286 287 1.166531 GGCCGGTTCCTGTATCATGC 61.167 60.000 1.90 0.00 0.00 4.06
287 288 1.166531 GCCGGTTCCTGTATCATGCC 61.167 60.000 1.90 0.00 0.00 4.40
288 289 0.180171 CCGGTTCCTGTATCATGCCA 59.820 55.000 0.00 0.00 0.00 4.92
289 290 1.408127 CCGGTTCCTGTATCATGCCAA 60.408 52.381 0.00 0.00 0.00 4.52
290 291 2.364632 CGGTTCCTGTATCATGCCAAA 58.635 47.619 0.00 0.00 0.00 3.28
291 292 2.097466 CGGTTCCTGTATCATGCCAAAC 59.903 50.000 0.00 0.00 0.00 2.93
292 293 3.088532 GGTTCCTGTATCATGCCAAACA 58.911 45.455 0.00 0.00 0.00 2.83
293 294 3.119495 GGTTCCTGTATCATGCCAAACAC 60.119 47.826 0.00 0.00 0.00 3.32
294 295 3.431673 TCCTGTATCATGCCAAACACA 57.568 42.857 0.00 0.00 0.00 3.72
295 296 3.966979 TCCTGTATCATGCCAAACACAT 58.033 40.909 0.00 0.00 0.00 3.21
296 297 3.947196 TCCTGTATCATGCCAAACACATC 59.053 43.478 0.00 0.00 0.00 3.06
297 298 3.067180 CCTGTATCATGCCAAACACATCC 59.933 47.826 0.00 0.00 0.00 3.51
298 299 3.694926 TGTATCATGCCAAACACATCCA 58.305 40.909 0.00 0.00 0.00 3.41
299 300 4.279982 TGTATCATGCCAAACACATCCAT 58.720 39.130 0.00 0.00 0.00 3.41
300 301 3.812156 ATCATGCCAAACACATCCATG 57.188 42.857 0.00 0.00 35.74 3.66
301 302 2.805194 TCATGCCAAACACATCCATGA 58.195 42.857 0.00 0.00 39.73 3.07
302 303 3.163467 TCATGCCAAACACATCCATGAA 58.837 40.909 0.00 0.00 39.26 2.57
303 304 3.056678 TCATGCCAAACACATCCATGAAC 60.057 43.478 0.00 0.00 39.26 3.18
304 305 1.269174 TGCCAAACACATCCATGAACG 59.731 47.619 0.00 0.00 0.00 3.95
305 306 1.539388 GCCAAACACATCCATGAACGA 59.461 47.619 0.00 0.00 0.00 3.85
306 307 2.030363 GCCAAACACATCCATGAACGAA 60.030 45.455 0.00 0.00 0.00 3.85
307 308 3.367292 GCCAAACACATCCATGAACGAAT 60.367 43.478 0.00 0.00 0.00 3.34
308 309 4.142491 GCCAAACACATCCATGAACGAATA 60.142 41.667 0.00 0.00 0.00 1.75
309 310 5.572211 CCAAACACATCCATGAACGAATAG 58.428 41.667 0.00 0.00 0.00 1.73
310 311 5.123820 CCAAACACATCCATGAACGAATAGT 59.876 40.000 0.00 0.00 0.00 2.12
311 312 5.801350 AACACATCCATGAACGAATAGTG 57.199 39.130 0.00 0.00 0.00 2.74
312 313 5.084818 ACACATCCATGAACGAATAGTGA 57.915 39.130 0.00 0.00 0.00 3.41
313 314 5.111989 ACACATCCATGAACGAATAGTGAG 58.888 41.667 0.00 0.00 0.00 3.51
314 315 5.111989 CACATCCATGAACGAATAGTGAGT 58.888 41.667 0.00 0.00 0.00 3.41
315 316 5.233050 CACATCCATGAACGAATAGTGAGTC 59.767 44.000 0.00 0.00 0.00 3.36
316 317 4.386867 TCCATGAACGAATAGTGAGTCC 57.613 45.455 0.00 0.00 0.00 3.85
317 318 3.767131 TCCATGAACGAATAGTGAGTCCA 59.233 43.478 0.00 0.00 0.00 4.02
318 319 4.221924 TCCATGAACGAATAGTGAGTCCAA 59.778 41.667 0.00 0.00 0.00 3.53
319 320 4.935205 CCATGAACGAATAGTGAGTCCAAA 59.065 41.667 0.00 0.00 0.00 3.28
320 321 5.163854 CCATGAACGAATAGTGAGTCCAAAC 60.164 44.000 0.00 0.00 0.00 2.93
321 322 5.209818 TGAACGAATAGTGAGTCCAAACT 57.790 39.130 0.00 0.00 38.88 2.66
322 323 6.335471 TGAACGAATAGTGAGTCCAAACTA 57.665 37.500 0.00 0.00 35.28 2.24
323 324 6.154445 TGAACGAATAGTGAGTCCAAACTAC 58.846 40.000 0.00 0.00 35.28 2.73
324 325 5.717078 ACGAATAGTGAGTCCAAACTACA 57.283 39.130 0.00 0.00 35.28 2.74
325 326 5.710984 ACGAATAGTGAGTCCAAACTACAG 58.289 41.667 0.00 0.00 35.28 2.74
326 327 5.103000 CGAATAGTGAGTCCAAACTACAGG 58.897 45.833 0.00 0.00 35.28 4.00
327 328 5.105877 CGAATAGTGAGTCCAAACTACAGGA 60.106 44.000 0.00 0.00 35.28 3.86
332 333 1.792006 GTCCAAACTACAGGACCGTG 58.208 55.000 0.00 0.00 46.79 4.94
333 334 1.069668 GTCCAAACTACAGGACCGTGT 59.930 52.381 0.00 0.96 46.79 4.49
334 335 1.764134 TCCAAACTACAGGACCGTGTT 59.236 47.619 0.54 1.96 31.46 3.32
335 336 1.871039 CCAAACTACAGGACCGTGTTG 59.129 52.381 0.54 2.21 31.46 3.33
336 337 1.871039 CAAACTACAGGACCGTGTTGG 59.129 52.381 0.54 0.00 46.41 3.77
337 338 1.416243 AACTACAGGACCGTGTTGGA 58.584 50.000 0.54 0.00 42.00 3.53
338 339 0.966920 ACTACAGGACCGTGTTGGAG 59.033 55.000 0.54 0.00 42.00 3.86
339 340 0.966920 CTACAGGACCGTGTTGGAGT 59.033 55.000 0.54 0.00 42.00 3.85
340 341 2.165167 CTACAGGACCGTGTTGGAGTA 58.835 52.381 0.54 0.00 42.00 2.59
341 342 0.966920 ACAGGACCGTGTTGGAGTAG 59.033 55.000 0.00 0.00 42.00 2.57
342 343 0.389948 CAGGACCGTGTTGGAGTAGC 60.390 60.000 0.00 0.00 42.00 3.58
343 344 0.542232 AGGACCGTGTTGGAGTAGCT 60.542 55.000 0.00 0.00 42.00 3.32
344 345 0.389948 GGACCGTGTTGGAGTAGCTG 60.390 60.000 0.00 0.00 42.00 4.24
345 346 0.317479 GACCGTGTTGGAGTAGCTGT 59.683 55.000 0.00 0.00 42.00 4.40
346 347 0.033504 ACCGTGTTGGAGTAGCTGTG 59.966 55.000 0.00 0.00 42.00 3.66
347 348 0.033504 CCGTGTTGGAGTAGCTGTGT 59.966 55.000 0.00 0.00 42.00 3.72
348 349 1.139989 CGTGTTGGAGTAGCTGTGTG 58.860 55.000 0.00 0.00 0.00 3.82
349 350 0.868406 GTGTTGGAGTAGCTGTGTGC 59.132 55.000 0.00 0.00 43.29 4.57
350 351 0.250295 TGTTGGAGTAGCTGTGTGCC 60.250 55.000 0.00 0.00 44.23 5.01
351 352 0.955919 GTTGGAGTAGCTGTGTGCCC 60.956 60.000 0.00 0.00 44.23 5.36
352 353 2.125512 GGAGTAGCTGTGTGCCCG 60.126 66.667 0.00 0.00 44.23 6.13
353 354 2.657237 GAGTAGCTGTGTGCCCGT 59.343 61.111 0.00 0.00 44.23 5.28
354 355 1.738099 GAGTAGCTGTGTGCCCGTG 60.738 63.158 0.00 0.00 44.23 4.94
355 356 3.423154 GTAGCTGTGTGCCCGTGC 61.423 66.667 0.00 0.00 44.23 5.34
371 372 4.666253 GCAGCTGCACCCAGGGAA 62.666 66.667 33.36 0.00 39.54 3.97
372 373 2.360852 CAGCTGCACCCAGGGAAG 60.361 66.667 14.54 7.88 39.54 3.46
373 374 2.530151 AGCTGCACCCAGGGAAGA 60.530 61.111 14.54 0.00 39.54 2.87
374 375 2.045536 GCTGCACCCAGGGAAGAG 60.046 66.667 14.54 5.23 39.54 2.85
375 376 2.596851 GCTGCACCCAGGGAAGAGA 61.597 63.158 14.54 0.00 39.54 3.10
376 377 2.069776 CTGCACCCAGGGAAGAGAA 58.930 57.895 14.54 0.00 35.38 2.87
377 378 0.401738 CTGCACCCAGGGAAGAGAAA 59.598 55.000 14.54 0.00 35.38 2.52
378 379 0.401738 TGCACCCAGGGAAGAGAAAG 59.598 55.000 14.54 0.00 0.00 2.62
379 380 0.693049 GCACCCAGGGAAGAGAAAGA 59.307 55.000 14.54 0.00 0.00 2.52
380 381 1.339535 GCACCCAGGGAAGAGAAAGAG 60.340 57.143 14.54 0.00 0.00 2.85
381 382 2.260822 CACCCAGGGAAGAGAAAGAGA 58.739 52.381 14.54 0.00 0.00 3.10
382 383 2.639839 CACCCAGGGAAGAGAAAGAGAA 59.360 50.000 14.54 0.00 0.00 2.87
383 384 2.909662 ACCCAGGGAAGAGAAAGAGAAG 59.090 50.000 14.54 0.00 0.00 2.85
384 385 3.177228 CCCAGGGAAGAGAAAGAGAAGA 58.823 50.000 0.00 0.00 0.00 2.87
385 386 3.779738 CCCAGGGAAGAGAAAGAGAAGAT 59.220 47.826 0.00 0.00 0.00 2.40
386 387 4.227073 CCCAGGGAAGAGAAAGAGAAGATT 59.773 45.833 0.00 0.00 0.00 2.40
387 388 5.280934 CCCAGGGAAGAGAAAGAGAAGATTT 60.281 44.000 0.00 0.00 0.00 2.17
388 389 5.647225 CCAGGGAAGAGAAAGAGAAGATTTG 59.353 44.000 0.00 0.00 0.00 2.32
389 390 5.647225 CAGGGAAGAGAAAGAGAAGATTTGG 59.353 44.000 0.00 0.00 0.00 3.28
390 391 4.946772 GGGAAGAGAAAGAGAAGATTTGGG 59.053 45.833 0.00 0.00 0.00 4.12
391 392 5.515710 GGGAAGAGAAAGAGAAGATTTGGGT 60.516 44.000 0.00 0.00 0.00 4.51
392 393 5.414144 GGAAGAGAAAGAGAAGATTTGGGTG 59.586 44.000 0.00 0.00 0.00 4.61
393 394 4.331108 AGAGAAAGAGAAGATTTGGGTGC 58.669 43.478 0.00 0.00 0.00 5.01
394 395 4.074970 GAGAAAGAGAAGATTTGGGTGCA 58.925 43.478 0.00 0.00 0.00 4.57
395 396 3.823304 AGAAAGAGAAGATTTGGGTGCAC 59.177 43.478 8.80 8.80 0.00 4.57
396 397 1.813513 AGAGAAGATTTGGGTGCACG 58.186 50.000 11.45 0.00 0.00 5.34
397 398 0.804989 GAGAAGATTTGGGTGCACGG 59.195 55.000 11.45 0.00 0.00 4.94
398 399 0.609131 AGAAGATTTGGGTGCACGGG 60.609 55.000 11.45 0.00 0.00 5.28
399 400 0.893727 GAAGATTTGGGTGCACGGGT 60.894 55.000 11.45 0.00 0.00 5.28
400 401 0.893727 AAGATTTGGGTGCACGGGTC 60.894 55.000 11.45 4.62 0.00 4.46
401 402 2.671619 ATTTGGGTGCACGGGTCG 60.672 61.111 11.45 0.00 0.00 4.79
402 403 3.185299 ATTTGGGTGCACGGGTCGA 62.185 57.895 11.45 0.00 0.00 4.20
403 404 4.612412 TTGGGTGCACGGGTCGAC 62.612 66.667 11.45 7.13 0.00 4.20
405 406 4.309950 GGGTGCACGGGTCGACTT 62.310 66.667 16.46 0.00 0.00 3.01
406 407 2.280592 GGTGCACGGGTCGACTTT 60.281 61.111 16.46 0.00 0.00 2.66
407 408 1.005867 GGTGCACGGGTCGACTTTA 60.006 57.895 16.46 0.00 0.00 1.85
408 409 0.600782 GGTGCACGGGTCGACTTTAA 60.601 55.000 16.46 0.00 0.00 1.52
409 410 1.435577 GTGCACGGGTCGACTTTAAT 58.564 50.000 16.46 0.00 0.00 1.40
410 411 1.802365 GTGCACGGGTCGACTTTAATT 59.198 47.619 16.46 0.00 0.00 1.40
411 412 2.995258 GTGCACGGGTCGACTTTAATTA 59.005 45.455 16.46 0.00 0.00 1.40
412 413 2.995258 TGCACGGGTCGACTTTAATTAC 59.005 45.455 16.46 0.00 0.00 1.89
413 414 2.349580 GCACGGGTCGACTTTAATTACC 59.650 50.000 16.46 4.30 0.00 2.85
414 415 3.853475 CACGGGTCGACTTTAATTACCT 58.147 45.455 16.46 0.00 0.00 3.08
415 416 4.248058 CACGGGTCGACTTTAATTACCTT 58.752 43.478 16.46 0.00 0.00 3.50
416 417 4.328169 CACGGGTCGACTTTAATTACCTTC 59.672 45.833 16.46 0.00 0.00 3.46
417 418 3.549070 CGGGTCGACTTTAATTACCTTCG 59.451 47.826 16.46 3.47 0.00 3.79
418 419 3.867493 GGGTCGACTTTAATTACCTTCGG 59.133 47.826 16.46 0.00 0.00 4.30
419 420 4.498241 GGTCGACTTTAATTACCTTCGGT 58.502 43.478 16.46 0.00 40.16 4.69
420 421 5.394115 GGGTCGACTTTAATTACCTTCGGTA 60.394 44.000 16.46 0.00 37.09 4.02
421 422 6.276091 GGTCGACTTTAATTACCTTCGGTAT 58.724 40.000 16.46 0.00 38.05 2.73
422 423 7.425606 GGTCGACTTTAATTACCTTCGGTATA 58.574 38.462 16.46 0.00 38.05 1.47
423 424 7.592903 GGTCGACTTTAATTACCTTCGGTATAG 59.407 40.741 16.46 0.00 38.05 1.31
424 425 8.131731 GTCGACTTTAATTACCTTCGGTATAGT 58.868 37.037 8.70 0.00 38.05 2.12
425 426 9.337396 TCGACTTTAATTACCTTCGGTATAGTA 57.663 33.333 8.26 0.00 38.05 1.82
426 427 9.387123 CGACTTTAATTACCTTCGGTATAGTAC 57.613 37.037 0.00 0.00 38.05 2.73
427 428 9.684448 GACTTTAATTACCTTCGGTATAGTACC 57.316 37.037 0.00 0.00 45.52 3.34
428 429 9.426534 ACTTTAATTACCTTCGGTATAGTACCT 57.573 33.333 4.78 0.00 46.81 3.08
432 433 4.397481 ACCTTCGGTATAGTACCTTTGC 57.603 45.455 4.78 0.00 46.81 3.68
433 434 3.770933 ACCTTCGGTATAGTACCTTTGCA 59.229 43.478 4.78 0.00 46.81 4.08
434 435 4.117685 CCTTCGGTATAGTACCTTTGCAC 58.882 47.826 4.78 0.00 46.81 4.57
435 436 4.142004 CCTTCGGTATAGTACCTTTGCACT 60.142 45.833 4.78 0.00 46.81 4.40
436 437 5.410355 TTCGGTATAGTACCTTTGCACTT 57.590 39.130 4.78 0.00 46.81 3.16
437 438 4.751060 TCGGTATAGTACCTTTGCACTTG 58.249 43.478 4.78 0.00 46.81 3.16
438 439 4.463539 TCGGTATAGTACCTTTGCACTTGA 59.536 41.667 4.78 0.00 46.81 3.02
439 440 4.565564 CGGTATAGTACCTTTGCACTTGAC 59.434 45.833 4.78 0.00 46.81 3.18
440 441 4.874396 GGTATAGTACCTTTGCACTTGACC 59.126 45.833 0.00 0.00 45.52 4.02
441 442 4.910458 ATAGTACCTTTGCACTTGACCT 57.090 40.909 0.00 0.00 0.00 3.85
442 443 2.851195 AGTACCTTTGCACTTGACCTG 58.149 47.619 0.00 0.00 0.00 4.00
443 444 2.172717 AGTACCTTTGCACTTGACCTGT 59.827 45.455 0.00 0.00 0.00 4.00
444 445 2.143876 ACCTTTGCACTTGACCTGTT 57.856 45.000 0.00 0.00 0.00 3.16
445 446 1.750778 ACCTTTGCACTTGACCTGTTG 59.249 47.619 0.00 0.00 0.00 3.33
446 447 1.536709 CCTTTGCACTTGACCTGTTGC 60.537 52.381 0.00 0.00 0.00 4.17
447 448 0.100325 TTTGCACTTGACCTGTTGCG 59.900 50.000 0.00 0.00 0.00 4.85
448 449 2.050985 GCACTTGACCTGTTGCGC 60.051 61.111 0.00 0.00 0.00 6.09
449 450 2.249309 CACTTGACCTGTTGCGCG 59.751 61.111 0.00 0.00 0.00 6.86
450 451 3.649986 ACTTGACCTGTTGCGCGC 61.650 61.111 27.26 27.26 0.00 6.86
451 452 3.349006 CTTGACCTGTTGCGCGCT 61.349 61.111 33.29 10.95 0.00 5.92
452 453 2.896801 CTTGACCTGTTGCGCGCTT 61.897 57.895 33.29 9.14 0.00 4.68
453 454 2.392613 CTTGACCTGTTGCGCGCTTT 62.393 55.000 33.29 9.53 0.00 3.51
454 455 2.127232 GACCTGTTGCGCGCTTTC 60.127 61.111 33.29 21.24 0.00 2.62
455 456 3.911155 GACCTGTTGCGCGCTTTCG 62.911 63.158 33.29 17.42 39.07 3.46
471 472 3.981159 CGCTCATAGTGCGCTGCG 61.981 66.667 19.17 19.17 46.72 5.18
472 473 3.634072 GCTCATAGTGCGCTGCGG 61.634 66.667 24.61 5.75 0.00 5.69
473 474 2.104928 CTCATAGTGCGCTGCGGA 59.895 61.111 24.61 19.52 0.00 5.54
474 475 1.300465 CTCATAGTGCGCTGCGGAT 60.300 57.895 24.61 13.14 0.00 4.18
475 476 1.280886 CTCATAGTGCGCTGCGGATC 61.281 60.000 24.61 15.09 0.00 3.36
476 477 2.029666 ATAGTGCGCTGCGGATCC 59.970 61.111 24.61 10.19 0.00 3.36
477 478 3.848347 ATAGTGCGCTGCGGATCCG 62.848 63.158 30.03 30.03 43.09 4.18
487 488 2.413351 CGGATCCGCGTCACATCT 59.587 61.111 23.37 0.00 0.00 2.90
488 489 1.652563 CGGATCCGCGTCACATCTA 59.347 57.895 23.37 0.00 0.00 1.98
489 490 0.386100 CGGATCCGCGTCACATCTAG 60.386 60.000 23.37 0.00 0.00 2.43
490 491 0.669077 GGATCCGCGTCACATCTAGT 59.331 55.000 4.92 0.00 0.00 2.57
491 492 1.335142 GGATCCGCGTCACATCTAGTC 60.335 57.143 4.92 0.00 0.00 2.59
492 493 1.333931 GATCCGCGTCACATCTAGTCA 59.666 52.381 4.92 0.00 0.00 3.41
493 494 0.733150 TCCGCGTCACATCTAGTCAG 59.267 55.000 4.92 0.00 0.00 3.51
494 495 0.867753 CCGCGTCACATCTAGTCAGC 60.868 60.000 4.92 0.00 0.00 4.26
495 496 0.099613 CGCGTCACATCTAGTCAGCT 59.900 55.000 0.00 0.00 0.00 4.24
496 497 1.330829 CGCGTCACATCTAGTCAGCTA 59.669 52.381 0.00 0.00 0.00 3.32
497 498 2.031595 CGCGTCACATCTAGTCAGCTAT 60.032 50.000 0.00 0.00 0.00 2.97
498 499 3.560503 GCGTCACATCTAGTCAGCTATC 58.439 50.000 0.00 0.00 0.00 2.08
499 500 3.003793 GCGTCACATCTAGTCAGCTATCA 59.996 47.826 0.00 0.00 0.00 2.15
500 501 4.498177 GCGTCACATCTAGTCAGCTATCAA 60.498 45.833 0.00 0.00 0.00 2.57
501 502 5.582550 CGTCACATCTAGTCAGCTATCAAA 58.417 41.667 0.00 0.00 0.00 2.69
502 503 6.212235 CGTCACATCTAGTCAGCTATCAAAT 58.788 40.000 0.00 0.00 0.00 2.32
503 504 6.362016 CGTCACATCTAGTCAGCTATCAAATC 59.638 42.308 0.00 0.00 0.00 2.17
504 505 6.362016 GTCACATCTAGTCAGCTATCAAATCG 59.638 42.308 0.00 0.00 0.00 3.34
505 506 6.039829 TCACATCTAGTCAGCTATCAAATCGT 59.960 38.462 0.00 0.00 0.00 3.73
506 507 6.362016 CACATCTAGTCAGCTATCAAATCGTC 59.638 42.308 0.00 0.00 0.00 4.20
507 508 6.264292 ACATCTAGTCAGCTATCAAATCGTCT 59.736 38.462 0.00 0.00 0.00 4.18
508 509 6.307031 TCTAGTCAGCTATCAAATCGTCTC 57.693 41.667 0.00 0.00 0.00 3.36
509 510 4.314740 AGTCAGCTATCAAATCGTCTCC 57.685 45.455 0.00 0.00 0.00 3.71
510 511 3.701542 AGTCAGCTATCAAATCGTCTCCA 59.298 43.478 0.00 0.00 0.00 3.86
511 512 4.047822 GTCAGCTATCAAATCGTCTCCAG 58.952 47.826 0.00 0.00 0.00 3.86
512 513 2.799412 CAGCTATCAAATCGTCTCCAGC 59.201 50.000 0.00 0.00 0.00 4.85
513 514 2.697751 AGCTATCAAATCGTCTCCAGCT 59.302 45.455 0.00 0.00 33.45 4.24
514 515 2.799412 GCTATCAAATCGTCTCCAGCTG 59.201 50.000 6.78 6.78 0.00 4.24
515 516 1.661341 ATCAAATCGTCTCCAGCTGC 58.339 50.000 8.66 0.00 0.00 5.25
516 517 0.610174 TCAAATCGTCTCCAGCTGCT 59.390 50.000 8.66 0.00 0.00 4.24
517 518 1.824852 TCAAATCGTCTCCAGCTGCTA 59.175 47.619 8.66 0.00 0.00 3.49
518 519 2.159184 TCAAATCGTCTCCAGCTGCTAG 60.159 50.000 8.66 8.11 0.00 3.42
519 520 0.103937 AATCGTCTCCAGCTGCTAGC 59.896 55.000 8.66 8.10 42.84 3.42
532 533 3.726607 GCTGCTAGCTGGCTATATATGG 58.273 50.000 23.43 4.48 38.45 2.74
533 534 3.386078 GCTGCTAGCTGGCTATATATGGA 59.614 47.826 23.43 0.00 38.45 3.41
534 535 4.141846 GCTGCTAGCTGGCTATATATGGAA 60.142 45.833 23.43 0.00 38.45 3.53
535 536 5.344743 TGCTAGCTGGCTATATATGGAAC 57.655 43.478 23.43 0.00 0.00 3.62
536 537 8.524889 GCTGCTAGCTGGCTATATATGGAACA 62.525 46.154 23.43 0.00 40.28 3.18
548 549 3.686622 TGGAACAGTGAGACAGCAC 57.313 52.632 0.00 0.00 39.05 4.40
557 558 3.431415 AGTGAGACAGCACTGTATACCA 58.569 45.455 2.68 0.00 46.72 3.25
558 559 4.026744 AGTGAGACAGCACTGTATACCAT 58.973 43.478 2.68 0.00 46.72 3.55
559 560 4.115516 GTGAGACAGCACTGTATACCATG 58.884 47.826 2.68 0.00 45.05 3.66
560 561 3.132824 TGAGACAGCACTGTATACCATGG 59.867 47.826 11.19 11.19 45.05 3.66
561 562 2.435805 AGACAGCACTGTATACCATGGG 59.564 50.000 18.09 0.00 45.05 4.00
562 563 1.490490 ACAGCACTGTATACCATGGGG 59.510 52.381 18.09 1.36 42.90 4.96
563 564 1.768275 CAGCACTGTATACCATGGGGA 59.232 52.381 18.09 3.51 38.05 4.81
564 565 2.050144 AGCACTGTATACCATGGGGAG 58.950 52.381 18.09 6.45 38.05 4.30
565 566 2.047061 GCACTGTATACCATGGGGAGA 58.953 52.381 18.09 0.00 38.05 3.71
566 567 2.224305 GCACTGTATACCATGGGGAGAC 60.224 54.545 18.09 11.50 38.05 3.36
567 568 3.038280 CACTGTATACCATGGGGAGACA 58.962 50.000 18.09 15.48 38.05 3.41
568 569 3.070159 CACTGTATACCATGGGGAGACAG 59.930 52.174 28.58 28.58 42.29 3.51
569 570 2.037772 CTGTATACCATGGGGAGACAGC 59.962 54.545 23.00 5.47 36.04 4.40
570 571 1.000955 GTATACCATGGGGAGACAGCG 59.999 57.143 18.09 0.00 38.05 5.18
571 572 0.398522 ATACCATGGGGAGACAGCGA 60.399 55.000 18.09 0.00 38.05 4.93
572 573 1.043116 TACCATGGGGAGACAGCGAG 61.043 60.000 18.09 0.00 38.05 5.03
573 574 2.060383 CCATGGGGAGACAGCGAGA 61.060 63.158 2.85 0.00 35.59 4.04
574 575 1.440893 CATGGGGAGACAGCGAGAG 59.559 63.158 0.00 0.00 0.00 3.20
575 576 1.760086 ATGGGGAGACAGCGAGAGG 60.760 63.158 0.00 0.00 0.00 3.69
576 577 3.844090 GGGGAGACAGCGAGAGGC 61.844 72.222 0.00 0.00 44.05 4.70
585 586 4.443266 GCGAGAGGCGAGCACCTT 62.443 66.667 0.00 0.00 41.32 3.50
586 587 3.064987 GCGAGAGGCGAGCACCTTA 62.065 63.158 0.00 0.00 41.32 2.69
587 588 1.736586 CGAGAGGCGAGCACCTTAT 59.263 57.895 0.00 0.00 41.32 1.73
588 589 0.952280 CGAGAGGCGAGCACCTTATA 59.048 55.000 0.00 0.00 41.32 0.98
589 590 1.068885 CGAGAGGCGAGCACCTTATAG 60.069 57.143 0.00 0.00 41.32 1.31
590 591 2.231529 GAGAGGCGAGCACCTTATAGA 58.768 52.381 0.00 0.00 41.32 1.98
591 592 1.957877 AGAGGCGAGCACCTTATAGAC 59.042 52.381 0.00 0.00 41.32 2.59
592 593 0.669077 AGGCGAGCACCTTATAGACG 59.331 55.000 0.00 0.00 36.28 4.18
593 594 0.384669 GGCGAGCACCTTATAGACGT 59.615 55.000 0.00 0.00 0.00 4.34
594 595 1.605710 GGCGAGCACCTTATAGACGTA 59.394 52.381 0.00 0.00 0.00 3.57
595 596 2.033801 GGCGAGCACCTTATAGACGTAA 59.966 50.000 0.00 0.00 0.00 3.18
596 597 6.043359 AGGCGAGCACCTTATAGACGTAAG 62.043 50.000 0.00 0.00 36.28 2.34
612 613 2.542595 CGTAAGTACCATCCGATTTGGC 59.457 50.000 0.00 0.00 37.81 4.52
613 614 1.663695 AAGTACCATCCGATTTGGCG 58.336 50.000 0.00 0.00 37.81 5.69
614 615 0.814010 AGTACCATCCGATTTGGCGC 60.814 55.000 0.00 0.00 37.81 6.53
615 616 1.092921 GTACCATCCGATTTGGCGCA 61.093 55.000 10.83 0.00 37.81 6.09
616 617 0.813610 TACCATCCGATTTGGCGCAG 60.814 55.000 10.83 0.00 37.81 5.18
629 630 3.026879 CGCAGCGAGATACGGCAG 61.027 66.667 9.98 0.00 42.83 4.85
630 631 2.659897 GCAGCGAGATACGGCAGG 60.660 66.667 0.00 0.00 42.83 4.85
631 632 2.028190 CAGCGAGATACGGCAGGG 59.972 66.667 0.00 0.00 42.83 4.45
632 633 2.123854 AGCGAGATACGGCAGGGA 60.124 61.111 0.00 0.00 42.83 4.20
633 634 1.756950 AGCGAGATACGGCAGGGAA 60.757 57.895 0.00 0.00 42.83 3.97
634 635 1.591863 GCGAGATACGGCAGGGAAC 60.592 63.158 0.00 0.00 42.83 3.62
635 636 1.067582 CGAGATACGGCAGGGAACC 59.932 63.158 0.00 0.00 44.25 3.62
654 655 3.793144 GTGCGGTGCAGCTGTAGC 61.793 66.667 22.21 22.21 40.08 3.58
655 656 4.312941 TGCGGTGCAGCTGTAGCA 62.313 61.111 29.17 21.59 45.16 3.49
656 657 3.049674 GCGGTGCAGCTGTAGCAA 61.050 61.111 29.17 3.28 44.64 3.91
657 658 3.031964 GCGGTGCAGCTGTAGCAAG 62.032 63.158 29.17 17.21 44.64 4.01
658 659 2.873288 GGTGCAGCTGTAGCAAGC 59.127 61.111 26.20 6.06 44.64 4.01
665 666 3.677002 GCTGTAGCAAGCTAGGAGG 57.323 57.895 1.29 0.00 40.20 4.30
666 667 1.115467 GCTGTAGCAAGCTAGGAGGA 58.885 55.000 1.29 0.00 40.20 3.71
667 668 1.068434 GCTGTAGCAAGCTAGGAGGAG 59.932 57.143 1.29 0.00 40.20 3.69
668 669 2.383855 CTGTAGCAAGCTAGGAGGAGT 58.616 52.381 1.29 0.00 0.00 3.85
669 670 2.763448 CTGTAGCAAGCTAGGAGGAGTT 59.237 50.000 1.29 0.00 0.00 3.01
670 671 2.497675 TGTAGCAAGCTAGGAGGAGTTG 59.502 50.000 1.29 0.00 0.00 3.16
674 675 1.003580 CAAGCTAGGAGGAGTTGGCAA 59.996 52.381 0.00 0.00 0.00 4.52
675 676 0.615850 AGCTAGGAGGAGTTGGCAAC 59.384 55.000 22.48 22.48 0.00 4.17
741 742 3.521937 AGATGAACCCCGACCTTCAAATA 59.478 43.478 0.00 0.00 30.32 1.40
786 788 6.894103 ACTCTCTAATCCCGGACTTTTTACTA 59.106 38.462 0.73 0.00 0.00 1.82
898 900 2.500910 TCTTTTTAATAGCGGACGGGGA 59.499 45.455 0.00 0.00 0.00 4.81
1034 1044 0.179004 ATTGGTTCCGCCTGTTCACA 60.179 50.000 0.00 0.00 38.35 3.58
1313 1379 1.248785 ATACAGTGGCACGACGACCT 61.249 55.000 12.71 0.00 0.00 3.85
1363 1429 4.913784 AGGAGATCTTCGAGATAGGGTAC 58.086 47.826 0.00 0.00 34.53 3.34
1467 1534 5.822519 ACAACAGAACAAACTGCAAGAGATA 59.177 36.000 0.00 0.00 41.06 1.98
1546 1613 7.282224 GGTGTGTGGCTTTCTGATATTTGTATA 59.718 37.037 0.00 0.00 0.00 1.47
1809 1939 5.767816 ACTGAATTTTCAACAGTGTACCC 57.232 39.130 0.00 0.00 42.18 3.69
1826 1956 2.035632 ACCCCGATTCAGTTTGCAAAA 58.964 42.857 14.67 0.00 0.00 2.44
1839 1969 6.022821 CAGTTTGCAAAATTTTGTCAGGTTG 58.977 36.000 27.13 18.75 40.24 3.77
2171 2363 5.465532 TTGGCAGCATTGAAATAGAACAA 57.534 34.783 0.00 0.00 0.00 2.83
2200 2392 5.128827 TCAGGTTTAGTTCCCATAGCACTAG 59.871 44.000 0.00 0.00 0.00 2.57
2224 5949 1.767759 ACCTTGCTCTTTTGTGCTGT 58.232 45.000 0.00 0.00 39.44 4.40
2301 6026 1.444553 GAACAGAGTCGCCTCGTGG 60.445 63.158 0.00 0.00 42.86 4.94
2303 6028 3.062466 CAGAGTCGCCTCGTGGGA 61.062 66.667 5.54 0.00 42.86 4.37
2328 6053 2.269241 GGGCGAACTGGAAGGAGG 59.731 66.667 0.00 0.00 39.30 4.30
2332 6059 1.918800 CGAACTGGAAGGAGGGGGT 60.919 63.158 0.00 0.00 39.30 4.95
2345 6072 2.047179 GGGGTCAGCGAGTTGGTC 60.047 66.667 0.00 0.00 0.00 4.02
2360 6087 2.753043 GTCCGGCTCGACCAGGTA 60.753 66.667 0.00 0.00 39.03 3.08
2370 6097 0.962489 CGACCAGGTATAGCCTCAGG 59.038 60.000 0.00 0.00 46.96 3.86
2371 6098 0.682292 GACCAGGTATAGCCTCAGGC 59.318 60.000 8.01 8.01 46.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.034879 AGTTGCCGTGGAATCGCTG 61.035 57.895 0.00 0.00 0.00 5.18
5 6 1.369091 ATCAGTTGCCGTGGAATCGC 61.369 55.000 0.00 0.00 0.00 4.58
6 7 1.086696 AATCAGTTGCCGTGGAATCG 58.913 50.000 0.00 0.00 0.00 3.34
8 9 1.176527 CCAATCAGTTGCCGTGGAAT 58.823 50.000 0.00 0.00 33.90 3.01
9 10 0.109532 TCCAATCAGTTGCCGTGGAA 59.890 50.000 0.00 0.00 35.45 3.53
11 12 1.875963 GTCCAATCAGTTGCCGTGG 59.124 57.895 0.00 0.00 33.90 4.94
12 13 0.948623 TCGTCCAATCAGTTGCCGTG 60.949 55.000 0.00 0.00 33.90 4.94
13 14 0.949105 GTCGTCCAATCAGTTGCCGT 60.949 55.000 0.00 0.00 33.90 5.68
14 15 1.787847 GTCGTCCAATCAGTTGCCG 59.212 57.895 0.00 0.00 33.90 5.69
15 16 1.635663 CCGTCGTCCAATCAGTTGCC 61.636 60.000 0.00 0.00 33.90 4.52
16 17 1.787847 CCGTCGTCCAATCAGTTGC 59.212 57.895 0.00 0.00 33.90 4.17
17 18 1.787847 GCCGTCGTCCAATCAGTTG 59.212 57.895 0.00 0.00 35.05 3.16
18 19 1.736645 CGCCGTCGTCCAATCAGTT 60.737 57.895 0.00 0.00 0.00 3.16
19 20 2.126071 CGCCGTCGTCCAATCAGT 60.126 61.111 0.00 0.00 0.00 3.41
29 30 1.063166 GGTAAGACCTACGCCGTCG 59.937 63.158 0.00 0.00 37.19 5.12
30 31 1.063166 CGGTAAGACCTACGCCGTC 59.937 63.158 0.00 0.00 35.66 4.79
31 32 2.409870 CCGGTAAGACCTACGCCGT 61.410 63.158 0.00 0.00 40.70 5.68
32 33 2.114670 TCCGGTAAGACCTACGCCG 61.115 63.158 0.00 0.00 41.82 6.46
33 34 1.315257 TGTCCGGTAAGACCTACGCC 61.315 60.000 0.00 0.00 35.66 5.68
34 35 0.100146 CTGTCCGGTAAGACCTACGC 59.900 60.000 0.00 0.00 35.66 4.42
35 36 0.737219 CCTGTCCGGTAAGACCTACG 59.263 60.000 0.00 0.00 35.66 3.51
36 37 1.109609 CCCTGTCCGGTAAGACCTAC 58.890 60.000 0.00 0.00 35.66 3.18
37 38 0.685458 GCCCTGTCCGGTAAGACCTA 60.685 60.000 0.00 0.00 35.66 3.08
38 39 1.988406 GCCCTGTCCGGTAAGACCT 60.988 63.158 0.00 0.00 35.66 3.85
39 40 2.582978 GCCCTGTCCGGTAAGACC 59.417 66.667 0.00 0.00 35.83 3.85
40 41 2.183555 CGCCCTGTCCGGTAAGAC 59.816 66.667 0.00 0.00 37.28 3.01
41 42 3.072468 CCGCCCTGTCCGGTAAGA 61.072 66.667 0.00 0.00 40.84 2.10
42 43 4.157120 CCCGCCCTGTCCGGTAAG 62.157 72.222 0.00 0.00 44.13 2.34
63 64 4.759096 GATGGCAACCACGCACGC 62.759 66.667 0.00 0.00 35.80 5.34
64 65 3.313007 CTGATGGCAACCACGCACG 62.313 63.158 0.00 0.00 35.80 5.34
65 66 2.562912 CTGATGGCAACCACGCAC 59.437 61.111 0.00 0.00 35.80 5.34
66 67 3.364441 GCTGATGGCAACCACGCA 61.364 61.111 0.00 0.00 41.35 5.24
67 68 4.120331 GGCTGATGGCAACCACGC 62.120 66.667 0.00 0.00 44.01 5.34
68 69 3.803082 CGGCTGATGGCAACCACG 61.803 66.667 0.00 0.00 44.01 4.94
69 70 2.672996 ACGGCTGATGGCAACCAC 60.673 61.111 0.00 0.00 44.01 4.16
70 71 2.359850 GACGGCTGATGGCAACCA 60.360 61.111 0.00 0.00 44.01 3.67
71 72 2.359850 TGACGGCTGATGGCAACC 60.360 61.111 0.00 0.00 44.01 3.77
72 73 0.745845 ATCTGACGGCTGATGGCAAC 60.746 55.000 10.21 0.00 44.01 4.17
73 74 0.462581 GATCTGACGGCTGATGGCAA 60.463 55.000 16.20 0.00 44.01 4.52
74 75 1.144716 GATCTGACGGCTGATGGCA 59.855 57.895 16.20 0.00 44.01 4.92
75 76 1.596477 GGATCTGACGGCTGATGGC 60.596 63.158 16.20 1.74 40.90 4.40
76 77 1.070445 GGGATCTGACGGCTGATGG 59.930 63.158 16.20 0.00 33.46 3.51
77 78 0.249784 CAGGGATCTGACGGCTGATG 60.250 60.000 16.20 0.00 43.49 3.07
78 79 0.397675 TCAGGGATCTGACGGCTGAT 60.398 55.000 10.85 10.85 44.39 2.90
79 80 1.000359 TCAGGGATCTGACGGCTGA 60.000 57.895 0.00 0.00 44.39 4.26
80 81 3.621225 TCAGGGATCTGACGGCTG 58.379 61.111 0.00 0.00 44.39 4.85
163 164 6.687081 ATTTTCGTGTAAACCAGACAAAGA 57.313 33.333 0.00 0.00 0.00 2.52
164 165 9.458374 AATAATTTTCGTGTAAACCAGACAAAG 57.542 29.630 0.00 0.00 0.00 2.77
171 172 8.818057 CAAACCAAATAATTTTCGTGTAAACCA 58.182 29.630 0.00 0.00 0.00 3.67
187 188 7.918033 CCGCATGAATTACATACAAACCAAATA 59.082 33.333 0.00 0.00 37.46 1.40
197 198 6.318628 TGAACAAACCGCATGAATTACATAC 58.681 36.000 0.00 0.00 37.46 2.39
201 202 6.092748 AGATTGAACAAACCGCATGAATTAC 58.907 36.000 0.00 0.00 0.00 1.89
202 203 6.266168 AGATTGAACAAACCGCATGAATTA 57.734 33.333 0.00 0.00 0.00 1.40
206 207 3.124466 CGTAGATTGAACAAACCGCATGA 59.876 43.478 0.00 0.00 0.00 3.07
207 208 3.120338 ACGTAGATTGAACAAACCGCATG 60.120 43.478 0.00 0.00 0.00 4.06
208 209 3.071479 ACGTAGATTGAACAAACCGCAT 58.929 40.909 0.00 0.00 0.00 4.73
209 210 2.485903 ACGTAGATTGAACAAACCGCA 58.514 42.857 0.00 0.00 0.00 5.69
210 211 3.223157 CAACGTAGATTGAACAAACCGC 58.777 45.455 0.00 0.00 0.00 5.68
211 212 3.495377 TCCAACGTAGATTGAACAAACCG 59.505 43.478 0.00 0.00 0.00 4.44
212 213 4.273969 TGTCCAACGTAGATTGAACAAACC 59.726 41.667 0.00 0.00 0.00 3.27
213 214 5.202640 GTGTCCAACGTAGATTGAACAAAC 58.797 41.667 0.00 0.00 0.00 2.93
214 215 5.412526 GTGTCCAACGTAGATTGAACAAA 57.587 39.130 0.00 0.00 0.00 2.83
228 229 1.370414 GTGCATGCACGTGTCCAAC 60.370 57.895 33.20 9.23 37.19 3.77
229 230 3.029810 GTGCATGCACGTGTCCAA 58.970 55.556 33.20 0.00 37.19 3.53
237 238 2.126888 CCCGAAACGTGCATGCAC 60.127 61.111 35.76 35.76 43.01 4.57
238 239 4.036804 GCCCGAAACGTGCATGCA 62.037 61.111 18.46 18.46 29.43 3.96
239 240 4.036804 TGCCCGAAACGTGCATGC 62.037 61.111 11.82 11.82 35.11 4.06
242 243 4.036804 GCATGCCCGAAACGTGCA 62.037 61.111 6.36 3.80 46.89 4.57
244 245 3.248630 AACGCATGCCCGAAACGTG 62.249 57.895 13.15 0.00 37.01 4.49
245 246 2.975799 AACGCATGCCCGAAACGT 60.976 55.556 13.15 0.00 38.88 3.99
246 247 2.501650 CAACGCATGCCCGAAACG 60.502 61.111 13.15 0.00 0.00 3.60
247 248 1.933115 ATCCAACGCATGCCCGAAAC 61.933 55.000 13.15 0.00 0.00 2.78
248 249 1.677300 ATCCAACGCATGCCCGAAA 60.677 52.632 13.15 0.00 0.00 3.46
249 250 2.045438 ATCCAACGCATGCCCGAA 60.045 55.556 13.15 0.00 0.00 4.30
250 251 2.823593 CATCCAACGCATGCCCGA 60.824 61.111 13.15 2.50 0.00 5.14
251 252 3.891400 CCATCCAACGCATGCCCG 61.891 66.667 13.15 0.85 0.00 6.13
252 253 4.211502 GCCATCCAACGCATGCCC 62.212 66.667 13.15 0.00 0.00 5.36
253 254 4.211502 GGCCATCCAACGCATGCC 62.212 66.667 13.15 0.00 0.00 4.40
254 255 4.557605 CGGCCATCCAACGCATGC 62.558 66.667 7.91 7.91 0.00 4.06
255 256 3.891400 CCGGCCATCCAACGCATG 61.891 66.667 2.24 0.00 0.00 4.06
256 257 3.936772 AACCGGCCATCCAACGCAT 62.937 57.895 0.00 0.00 0.00 4.73
257 258 4.652131 AACCGGCCATCCAACGCA 62.652 61.111 0.00 0.00 0.00 5.24
258 259 3.810896 GAACCGGCCATCCAACGC 61.811 66.667 0.00 0.00 0.00 4.84
259 260 3.131478 GGAACCGGCCATCCAACG 61.131 66.667 14.82 0.00 35.71 4.10
260 261 2.046285 CAGGAACCGGCCATCCAAC 61.046 63.158 20.13 0.00 38.23 3.77
261 262 1.202099 TACAGGAACCGGCCATCCAA 61.202 55.000 20.13 5.93 38.23 3.53
262 263 0.986019 ATACAGGAACCGGCCATCCA 60.986 55.000 20.13 3.97 38.23 3.41
263 264 0.250338 GATACAGGAACCGGCCATCC 60.250 60.000 12.44 12.44 35.88 3.51
264 265 0.468226 TGATACAGGAACCGGCCATC 59.532 55.000 0.00 0.00 0.00 3.51
265 266 1.140312 ATGATACAGGAACCGGCCAT 58.860 50.000 0.00 0.00 0.00 4.40
266 267 0.180171 CATGATACAGGAACCGGCCA 59.820 55.000 0.00 0.00 0.00 5.36
267 268 1.166531 GCATGATACAGGAACCGGCC 61.167 60.000 0.00 0.00 0.00 6.13
268 269 1.166531 GGCATGATACAGGAACCGGC 61.167 60.000 0.00 0.00 0.00 6.13
269 270 0.180171 TGGCATGATACAGGAACCGG 59.820 55.000 0.00 0.00 0.00 5.28
270 271 2.036958 TTGGCATGATACAGGAACCG 57.963 50.000 0.00 0.00 0.00 4.44
271 272 3.088532 TGTTTGGCATGATACAGGAACC 58.911 45.455 0.00 0.00 0.00 3.62
272 273 3.505680 TGTGTTTGGCATGATACAGGAAC 59.494 43.478 0.00 0.00 0.00 3.62
273 274 3.760738 TGTGTTTGGCATGATACAGGAA 58.239 40.909 0.00 0.00 0.00 3.36
274 275 3.431673 TGTGTTTGGCATGATACAGGA 57.568 42.857 0.00 0.00 0.00 3.86
275 276 3.067180 GGATGTGTTTGGCATGATACAGG 59.933 47.826 0.00 0.00 0.00 4.00
276 277 3.695556 TGGATGTGTTTGGCATGATACAG 59.304 43.478 0.00 0.00 0.00 2.74
277 278 3.694926 TGGATGTGTTTGGCATGATACA 58.305 40.909 0.00 4.04 0.00 2.29
278 279 4.338964 TCATGGATGTGTTTGGCATGATAC 59.661 41.667 0.00 0.00 0.00 2.24
279 280 4.534797 TCATGGATGTGTTTGGCATGATA 58.465 39.130 0.00 0.00 0.00 2.15
280 281 3.367321 TCATGGATGTGTTTGGCATGAT 58.633 40.909 0.00 0.00 0.00 2.45
281 282 2.805194 TCATGGATGTGTTTGGCATGA 58.195 42.857 0.00 0.00 0.00 3.07
282 283 3.255725 GTTCATGGATGTGTTTGGCATG 58.744 45.455 0.00 0.00 0.00 4.06
283 284 2.094597 CGTTCATGGATGTGTTTGGCAT 60.095 45.455 0.00 0.00 0.00 4.40
284 285 1.269174 CGTTCATGGATGTGTTTGGCA 59.731 47.619 0.00 0.00 0.00 4.92
285 286 1.539388 TCGTTCATGGATGTGTTTGGC 59.461 47.619 0.00 0.00 0.00 4.52
286 287 3.913548 TTCGTTCATGGATGTGTTTGG 57.086 42.857 0.00 0.00 0.00 3.28
287 288 6.023435 CACTATTCGTTCATGGATGTGTTTG 58.977 40.000 0.00 0.00 0.00 2.93
288 289 5.937540 TCACTATTCGTTCATGGATGTGTTT 59.062 36.000 0.00 0.00 0.00 2.83
289 290 5.487433 TCACTATTCGTTCATGGATGTGTT 58.513 37.500 0.00 0.00 0.00 3.32
290 291 5.084818 TCACTATTCGTTCATGGATGTGT 57.915 39.130 0.00 0.00 0.00 3.72
291 292 5.111989 ACTCACTATTCGTTCATGGATGTG 58.888 41.667 0.00 0.00 0.00 3.21
292 293 5.344743 ACTCACTATTCGTTCATGGATGT 57.655 39.130 0.00 0.00 0.00 3.06
293 294 4.747108 GGACTCACTATTCGTTCATGGATG 59.253 45.833 0.00 0.00 0.00 3.51
294 295 4.405680 TGGACTCACTATTCGTTCATGGAT 59.594 41.667 0.00 0.00 0.00 3.41
295 296 3.767131 TGGACTCACTATTCGTTCATGGA 59.233 43.478 0.00 0.00 0.00 3.41
296 297 4.123497 TGGACTCACTATTCGTTCATGG 57.877 45.455 0.00 0.00 0.00 3.66
297 298 5.639506 AGTTTGGACTCACTATTCGTTCATG 59.360 40.000 0.00 0.00 0.00 3.07
298 299 5.794894 AGTTTGGACTCACTATTCGTTCAT 58.205 37.500 0.00 0.00 0.00 2.57
299 300 5.209818 AGTTTGGACTCACTATTCGTTCA 57.790 39.130 0.00 0.00 0.00 3.18
300 301 6.154445 TGTAGTTTGGACTCACTATTCGTTC 58.846 40.000 0.00 0.00 37.33 3.95
301 302 6.092955 TGTAGTTTGGACTCACTATTCGTT 57.907 37.500 0.00 0.00 37.33 3.85
302 303 5.336531 CCTGTAGTTTGGACTCACTATTCGT 60.337 44.000 0.00 0.00 37.33 3.85
303 304 5.103000 CCTGTAGTTTGGACTCACTATTCG 58.897 45.833 0.00 0.00 37.33 3.34
304 305 6.100668 GTCCTGTAGTTTGGACTCACTATTC 58.899 44.000 5.05 0.00 46.65 1.75
305 306 6.038997 GTCCTGTAGTTTGGACTCACTATT 57.961 41.667 5.05 0.00 46.65 1.73
306 307 5.662674 GTCCTGTAGTTTGGACTCACTAT 57.337 43.478 5.05 0.00 46.65 2.12
314 315 1.416243 ACACGGTCCTGTAGTTTGGA 58.584 50.000 0.00 0.00 0.00 3.53
315 316 1.871039 CAACACGGTCCTGTAGTTTGG 59.129 52.381 0.00 0.00 0.00 3.28
316 317 1.871039 CCAACACGGTCCTGTAGTTTG 59.129 52.381 0.00 0.00 0.00 2.93
317 318 1.764134 TCCAACACGGTCCTGTAGTTT 59.236 47.619 0.00 0.00 35.57 2.66
318 319 1.343465 CTCCAACACGGTCCTGTAGTT 59.657 52.381 0.00 0.00 35.57 2.24
319 320 0.966920 CTCCAACACGGTCCTGTAGT 59.033 55.000 0.00 0.00 35.57 2.73
320 321 0.966920 ACTCCAACACGGTCCTGTAG 59.033 55.000 0.00 0.00 35.57 2.74
321 322 2.165167 CTACTCCAACACGGTCCTGTA 58.835 52.381 0.00 0.00 35.57 2.74
322 323 0.966920 CTACTCCAACACGGTCCTGT 59.033 55.000 0.00 0.00 35.57 4.00
323 324 0.389948 GCTACTCCAACACGGTCCTG 60.390 60.000 0.00 0.00 35.57 3.86
324 325 0.542232 AGCTACTCCAACACGGTCCT 60.542 55.000 0.00 0.00 35.57 3.85
325 326 0.389948 CAGCTACTCCAACACGGTCC 60.390 60.000 0.00 0.00 35.57 4.46
326 327 0.317479 ACAGCTACTCCAACACGGTC 59.683 55.000 0.00 0.00 35.57 4.79
327 328 0.033504 CACAGCTACTCCAACACGGT 59.966 55.000 0.00 0.00 35.57 4.83
328 329 0.033504 ACACAGCTACTCCAACACGG 59.966 55.000 0.00 0.00 0.00 4.94
329 330 1.139989 CACACAGCTACTCCAACACG 58.860 55.000 0.00 0.00 0.00 4.49
330 331 0.868406 GCACACAGCTACTCCAACAC 59.132 55.000 0.00 0.00 41.15 3.32
331 332 0.250295 GGCACACAGCTACTCCAACA 60.250 55.000 0.00 0.00 44.79 3.33
332 333 0.955919 GGGCACACAGCTACTCCAAC 60.956 60.000 0.00 0.00 44.79 3.77
333 334 1.374947 GGGCACACAGCTACTCCAA 59.625 57.895 0.00 0.00 44.79 3.53
334 335 2.942796 CGGGCACACAGCTACTCCA 61.943 63.158 0.00 0.00 44.79 3.86
335 336 2.125512 CGGGCACACAGCTACTCC 60.126 66.667 0.00 0.00 44.79 3.85
336 337 1.738099 CACGGGCACACAGCTACTC 60.738 63.158 0.00 0.00 44.79 2.59
337 338 2.343758 CACGGGCACACAGCTACT 59.656 61.111 0.00 0.00 44.79 2.57
338 339 3.423154 GCACGGGCACACAGCTAC 61.423 66.667 3.77 0.00 44.79 3.58
354 355 4.666253 TTCCCTGGGTGCAGCTGC 62.666 66.667 31.89 31.89 42.50 5.25
355 356 2.360852 CTTCCCTGGGTGCAGCTG 60.361 66.667 16.65 10.11 0.00 4.24
356 357 2.530151 TCTTCCCTGGGTGCAGCT 60.530 61.111 16.65 0.00 0.00 4.24
357 358 2.045536 CTCTTCCCTGGGTGCAGC 60.046 66.667 13.56 7.55 0.00 5.25
358 359 0.401738 TTTCTCTTCCCTGGGTGCAG 59.598 55.000 13.56 7.75 0.00 4.41
359 360 0.401738 CTTTCTCTTCCCTGGGTGCA 59.598 55.000 13.56 0.00 0.00 4.57
360 361 0.693049 TCTTTCTCTTCCCTGGGTGC 59.307 55.000 13.56 0.00 0.00 5.01
361 362 2.260822 TCTCTTTCTCTTCCCTGGGTG 58.739 52.381 13.56 7.37 0.00 4.61
362 363 2.723530 TCTCTTTCTCTTCCCTGGGT 57.276 50.000 13.56 0.00 0.00 4.51
363 364 3.177228 TCTTCTCTTTCTCTTCCCTGGG 58.823 50.000 6.33 6.33 0.00 4.45
364 365 5.434182 AATCTTCTCTTTCTCTTCCCTGG 57.566 43.478 0.00 0.00 0.00 4.45
365 366 5.647225 CCAAATCTTCTCTTTCTCTTCCCTG 59.353 44.000 0.00 0.00 0.00 4.45
366 367 5.280934 CCCAAATCTTCTCTTTCTCTTCCCT 60.281 44.000 0.00 0.00 0.00 4.20
367 368 4.946772 CCCAAATCTTCTCTTTCTCTTCCC 59.053 45.833 0.00 0.00 0.00 3.97
368 369 5.414144 CACCCAAATCTTCTCTTTCTCTTCC 59.586 44.000 0.00 0.00 0.00 3.46
369 370 5.106357 GCACCCAAATCTTCTCTTTCTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
370 371 4.764308 GCACCCAAATCTTCTCTTTCTCTT 59.236 41.667 0.00 0.00 0.00 2.85
371 372 4.202503 TGCACCCAAATCTTCTCTTTCTCT 60.203 41.667 0.00 0.00 0.00 3.10
372 373 4.074970 TGCACCCAAATCTTCTCTTTCTC 58.925 43.478 0.00 0.00 0.00 2.87
373 374 3.823304 GTGCACCCAAATCTTCTCTTTCT 59.177 43.478 5.22 0.00 0.00 2.52
374 375 3.365364 CGTGCACCCAAATCTTCTCTTTC 60.365 47.826 12.15 0.00 0.00 2.62
375 376 2.554032 CGTGCACCCAAATCTTCTCTTT 59.446 45.455 12.15 0.00 0.00 2.52
376 377 2.154462 CGTGCACCCAAATCTTCTCTT 58.846 47.619 12.15 0.00 0.00 2.85
377 378 1.611673 CCGTGCACCCAAATCTTCTCT 60.612 52.381 12.15 0.00 0.00 3.10
378 379 0.804989 CCGTGCACCCAAATCTTCTC 59.195 55.000 12.15 0.00 0.00 2.87
379 380 0.609131 CCCGTGCACCCAAATCTTCT 60.609 55.000 12.15 0.00 0.00 2.85
380 381 0.893727 ACCCGTGCACCCAAATCTTC 60.894 55.000 12.15 0.00 0.00 2.87
381 382 0.893727 GACCCGTGCACCCAAATCTT 60.894 55.000 12.15 0.00 0.00 2.40
382 383 1.303317 GACCCGTGCACCCAAATCT 60.303 57.895 12.15 0.00 0.00 2.40
383 384 2.686816 CGACCCGTGCACCCAAATC 61.687 63.158 12.15 1.32 0.00 2.17
384 385 2.671619 CGACCCGTGCACCCAAAT 60.672 61.111 12.15 0.00 0.00 2.32
385 386 3.862991 TCGACCCGTGCACCCAAA 61.863 61.111 12.15 0.00 0.00 3.28
386 387 4.612412 GTCGACCCGTGCACCCAA 62.612 66.667 12.15 0.00 0.00 4.12
388 389 2.438951 TAAAGTCGACCCGTGCACCC 62.439 60.000 13.01 0.00 0.00 4.61
389 390 0.600782 TTAAAGTCGACCCGTGCACC 60.601 55.000 13.01 0.00 0.00 5.01
390 391 1.435577 ATTAAAGTCGACCCGTGCAC 58.564 50.000 13.01 6.82 0.00 4.57
391 392 2.172851 AATTAAAGTCGACCCGTGCA 57.827 45.000 13.01 0.00 0.00 4.57
392 393 2.349580 GGTAATTAAAGTCGACCCGTGC 59.650 50.000 13.01 0.00 0.00 5.34
393 394 3.853475 AGGTAATTAAAGTCGACCCGTG 58.147 45.455 13.01 0.00 0.00 4.94
394 395 4.498241 GAAGGTAATTAAAGTCGACCCGT 58.502 43.478 13.01 1.38 0.00 5.28
395 396 3.549070 CGAAGGTAATTAAAGTCGACCCG 59.451 47.826 13.01 0.00 0.00 5.28
418 419 5.581085 CAGGTCAAGTGCAAAGGTACTATAC 59.419 44.000 0.00 0.00 39.19 1.47
419 420 5.247564 ACAGGTCAAGTGCAAAGGTACTATA 59.752 40.000 0.00 0.00 39.19 1.31
420 421 4.041691 ACAGGTCAAGTGCAAAGGTACTAT 59.958 41.667 0.00 0.00 39.19 2.12
421 422 3.389983 ACAGGTCAAGTGCAAAGGTACTA 59.610 43.478 0.00 0.00 39.19 1.82
422 423 2.172717 ACAGGTCAAGTGCAAAGGTACT 59.827 45.455 0.00 0.00 42.14 2.73
423 424 2.572290 ACAGGTCAAGTGCAAAGGTAC 58.428 47.619 0.00 0.00 0.00 3.34
424 425 2.948979 CAACAGGTCAAGTGCAAAGGTA 59.051 45.455 0.00 0.00 0.00 3.08
425 426 1.750778 CAACAGGTCAAGTGCAAAGGT 59.249 47.619 0.00 0.00 0.00 3.50
426 427 1.536709 GCAACAGGTCAAGTGCAAAGG 60.537 52.381 0.00 0.00 0.00 3.11
427 428 1.843992 GCAACAGGTCAAGTGCAAAG 58.156 50.000 0.00 0.00 0.00 2.77
428 429 0.100325 CGCAACAGGTCAAGTGCAAA 59.900 50.000 0.00 0.00 0.00 3.68
429 430 1.726865 CGCAACAGGTCAAGTGCAA 59.273 52.632 0.00 0.00 0.00 4.08
430 431 2.833533 GCGCAACAGGTCAAGTGCA 61.834 57.895 0.30 0.00 37.44 4.57
431 432 2.050985 GCGCAACAGGTCAAGTGC 60.051 61.111 0.30 0.00 0.00 4.40
432 433 2.249309 CGCGCAACAGGTCAAGTG 59.751 61.111 8.75 0.00 0.00 3.16
433 434 3.649986 GCGCGCAACAGGTCAAGT 61.650 61.111 29.10 0.00 0.00 3.16
434 435 2.392613 AAAGCGCGCAACAGGTCAAG 62.393 55.000 35.10 0.00 0.00 3.02
435 436 2.387125 GAAAGCGCGCAACAGGTCAA 62.387 55.000 35.10 0.00 0.00 3.18
436 437 2.892334 GAAAGCGCGCAACAGGTCA 61.892 57.895 35.10 0.00 0.00 4.02
437 438 2.127232 GAAAGCGCGCAACAGGTC 60.127 61.111 35.10 16.05 0.00 3.85
438 439 4.012895 CGAAAGCGCGCAACAGGT 62.013 61.111 35.10 8.46 0.00 4.00
455 456 3.634072 CCGCAGCGCACTATGAGC 61.634 66.667 11.47 0.38 43.69 4.26
456 457 1.280886 GATCCGCAGCGCACTATGAG 61.281 60.000 11.47 0.00 0.00 2.90
457 458 1.300156 GATCCGCAGCGCACTATGA 60.300 57.895 11.47 0.00 0.00 2.15
458 459 2.313172 GGATCCGCAGCGCACTATG 61.313 63.158 11.47 0.00 0.00 2.23
459 460 2.029666 GGATCCGCAGCGCACTAT 59.970 61.111 11.47 0.00 0.00 2.12
460 461 4.569023 CGGATCCGCAGCGCACTA 62.569 66.667 23.37 0.00 0.00 2.74
470 471 0.386100 CTAGATGTGACGCGGATCCG 60.386 60.000 30.03 30.03 43.09 4.18
471 472 0.669077 ACTAGATGTGACGCGGATCC 59.331 55.000 12.47 0.00 0.00 3.36
472 473 1.333931 TGACTAGATGTGACGCGGATC 59.666 52.381 12.47 6.32 0.00 3.36
473 474 1.335182 CTGACTAGATGTGACGCGGAT 59.665 52.381 12.47 0.00 0.00 4.18
474 475 0.733150 CTGACTAGATGTGACGCGGA 59.267 55.000 12.47 0.00 0.00 5.54
475 476 0.867753 GCTGACTAGATGTGACGCGG 60.868 60.000 12.47 0.00 0.00 6.46
476 477 0.099613 AGCTGACTAGATGTGACGCG 59.900 55.000 3.53 3.53 0.00 6.01
477 478 3.003793 TGATAGCTGACTAGATGTGACGC 59.996 47.826 0.00 0.00 0.00 5.19
478 479 4.820284 TGATAGCTGACTAGATGTGACG 57.180 45.455 0.00 0.00 0.00 4.35
479 480 6.362016 CGATTTGATAGCTGACTAGATGTGAC 59.638 42.308 0.00 0.00 0.00 3.67
480 481 6.039829 ACGATTTGATAGCTGACTAGATGTGA 59.960 38.462 0.00 0.00 0.00 3.58
481 482 6.212235 ACGATTTGATAGCTGACTAGATGTG 58.788 40.000 0.00 0.00 0.00 3.21
482 483 6.264292 AGACGATTTGATAGCTGACTAGATGT 59.736 38.462 0.00 0.00 0.00 3.06
483 484 6.676950 AGACGATTTGATAGCTGACTAGATG 58.323 40.000 0.00 0.00 0.00 2.90
484 485 6.072175 GGAGACGATTTGATAGCTGACTAGAT 60.072 42.308 0.00 0.00 0.00 1.98
485 486 5.239744 GGAGACGATTTGATAGCTGACTAGA 59.760 44.000 0.00 0.00 0.00 2.43
486 487 5.009110 TGGAGACGATTTGATAGCTGACTAG 59.991 44.000 0.00 0.00 0.00 2.57
487 488 4.887655 TGGAGACGATTTGATAGCTGACTA 59.112 41.667 0.00 0.00 0.00 2.59
488 489 3.701542 TGGAGACGATTTGATAGCTGACT 59.298 43.478 0.00 0.00 0.00 3.41
489 490 4.046938 TGGAGACGATTTGATAGCTGAC 57.953 45.455 0.00 0.00 0.00 3.51
490 491 3.491619 GCTGGAGACGATTTGATAGCTGA 60.492 47.826 0.00 0.00 0.00 4.26
491 492 2.799412 GCTGGAGACGATTTGATAGCTG 59.201 50.000 0.00 0.00 0.00 4.24
492 493 2.697751 AGCTGGAGACGATTTGATAGCT 59.302 45.455 0.00 0.00 35.61 3.32
493 494 2.799412 CAGCTGGAGACGATTTGATAGC 59.201 50.000 5.57 0.00 0.00 2.97
494 495 2.799412 GCAGCTGGAGACGATTTGATAG 59.201 50.000 17.12 0.00 0.00 2.08
495 496 2.432146 AGCAGCTGGAGACGATTTGATA 59.568 45.455 17.12 0.00 0.00 2.15
496 497 1.209019 AGCAGCTGGAGACGATTTGAT 59.791 47.619 17.12 0.00 0.00 2.57
497 498 0.610174 AGCAGCTGGAGACGATTTGA 59.390 50.000 17.12 0.00 0.00 2.69
498 499 2.200067 CTAGCAGCTGGAGACGATTTG 58.800 52.381 17.12 0.00 0.00 2.32
499 500 1.472376 GCTAGCAGCTGGAGACGATTT 60.472 52.381 17.12 0.00 38.45 2.17
500 501 0.103937 GCTAGCAGCTGGAGACGATT 59.896 55.000 17.12 0.00 38.45 3.34
501 502 1.739049 GCTAGCAGCTGGAGACGAT 59.261 57.895 17.12 0.00 38.45 3.73
502 503 3.201494 GCTAGCAGCTGGAGACGA 58.799 61.111 17.12 0.00 38.45 4.20
511 512 3.386078 TCCATATATAGCCAGCTAGCAGC 59.614 47.826 18.83 18.97 42.84 5.25
512 513 5.105187 TGTTCCATATATAGCCAGCTAGCAG 60.105 44.000 18.83 9.15 34.23 4.24
513 514 4.777366 TGTTCCATATATAGCCAGCTAGCA 59.223 41.667 18.83 0.00 34.23 3.49
514 515 5.105146 ACTGTTCCATATATAGCCAGCTAGC 60.105 44.000 6.62 6.62 31.45 3.42
515 516 6.153510 TCACTGTTCCATATATAGCCAGCTAG 59.846 42.308 5.49 0.00 31.45 3.42
516 517 6.016555 TCACTGTTCCATATATAGCCAGCTA 58.983 40.000 1.10 1.10 0.00 3.32
517 518 4.840680 TCACTGTTCCATATATAGCCAGCT 59.159 41.667 0.00 0.00 0.00 4.24
518 519 5.047021 TCTCACTGTTCCATATATAGCCAGC 60.047 44.000 0.00 0.00 0.00 4.85
519 520 6.015095 TGTCTCACTGTTCCATATATAGCCAG 60.015 42.308 0.00 0.00 0.00 4.85
520 521 5.838521 TGTCTCACTGTTCCATATATAGCCA 59.161 40.000 0.00 0.00 0.00 4.75
521 522 6.346477 TGTCTCACTGTTCCATATATAGCC 57.654 41.667 0.00 0.00 0.00 3.93
522 523 5.866633 GCTGTCTCACTGTTCCATATATAGC 59.133 44.000 0.00 0.00 0.00 2.97
523 524 6.865726 GTGCTGTCTCACTGTTCCATATATAG 59.134 42.308 0.00 0.00 34.29 1.31
524 525 6.551227 AGTGCTGTCTCACTGTTCCATATATA 59.449 38.462 0.00 0.00 44.88 0.86
525 526 5.365025 AGTGCTGTCTCACTGTTCCATATAT 59.635 40.000 0.00 0.00 44.88 0.86
526 527 4.711846 AGTGCTGTCTCACTGTTCCATATA 59.288 41.667 0.00 0.00 44.88 0.86
527 528 3.517100 AGTGCTGTCTCACTGTTCCATAT 59.483 43.478 0.00 0.00 44.88 1.78
528 529 2.899900 AGTGCTGTCTCACTGTTCCATA 59.100 45.455 0.00 0.00 44.88 2.74
529 530 1.696336 AGTGCTGTCTCACTGTTCCAT 59.304 47.619 0.00 0.00 44.88 3.41
530 531 1.123077 AGTGCTGTCTCACTGTTCCA 58.877 50.000 0.00 0.00 44.88 3.53
531 532 3.997672 AGTGCTGTCTCACTGTTCC 57.002 52.632 0.00 0.00 44.88 3.62
537 538 3.868757 TGGTATACAGTGCTGTCTCAC 57.131 47.619 8.23 5.45 43.74 3.51
538 539 3.132824 CCATGGTATACAGTGCTGTCTCA 59.867 47.826 8.23 4.19 43.74 3.27
539 540 3.493350 CCCATGGTATACAGTGCTGTCTC 60.493 52.174 11.73 1.29 43.74 3.36
540 541 2.435805 CCCATGGTATACAGTGCTGTCT 59.564 50.000 11.73 1.86 43.74 3.41
541 542 2.485479 CCCCATGGTATACAGTGCTGTC 60.485 54.545 11.73 0.00 43.74 3.51
542 543 1.490490 CCCCATGGTATACAGTGCTGT 59.510 52.381 11.73 9.90 46.87 4.40
543 544 1.768275 TCCCCATGGTATACAGTGCTG 59.232 52.381 11.73 0.00 0.00 4.41
544 545 2.050144 CTCCCCATGGTATACAGTGCT 58.950 52.381 11.73 0.00 0.00 4.40
545 546 2.047061 TCTCCCCATGGTATACAGTGC 58.953 52.381 11.73 0.00 0.00 4.40
546 547 3.038280 TGTCTCCCCATGGTATACAGTG 58.962 50.000 11.73 2.67 0.00 3.66
547 548 3.309296 CTGTCTCCCCATGGTATACAGT 58.691 50.000 11.73 0.00 34.70 3.55
548 549 2.037772 GCTGTCTCCCCATGGTATACAG 59.962 54.545 20.91 20.91 38.55 2.74
549 550 2.047061 GCTGTCTCCCCATGGTATACA 58.953 52.381 11.73 8.45 0.00 2.29
550 551 1.000955 CGCTGTCTCCCCATGGTATAC 59.999 57.143 11.73 3.99 0.00 1.47
551 552 1.133294 TCGCTGTCTCCCCATGGTATA 60.133 52.381 11.73 0.00 0.00 1.47
552 553 0.398522 TCGCTGTCTCCCCATGGTAT 60.399 55.000 11.73 0.00 0.00 2.73
553 554 1.001120 TCGCTGTCTCCCCATGGTA 59.999 57.895 11.73 0.00 0.00 3.25
554 555 2.284625 TCGCTGTCTCCCCATGGT 60.285 61.111 11.73 0.00 0.00 3.55
555 556 2.025767 CTCTCGCTGTCTCCCCATGG 62.026 65.000 4.14 4.14 0.00 3.66
556 557 1.440893 CTCTCGCTGTCTCCCCATG 59.559 63.158 0.00 0.00 0.00 3.66
557 558 1.760086 CCTCTCGCTGTCTCCCCAT 60.760 63.158 0.00 0.00 0.00 4.00
558 559 2.363018 CCTCTCGCTGTCTCCCCA 60.363 66.667 0.00 0.00 0.00 4.96
559 560 3.844090 GCCTCTCGCTGTCTCCCC 61.844 72.222 0.00 0.00 0.00 4.81
560 561 4.200283 CGCCTCTCGCTGTCTCCC 62.200 72.222 0.00 0.00 34.21 4.30
561 562 3.119709 CTCGCCTCTCGCTGTCTCC 62.120 68.421 0.00 0.00 38.27 3.71
562 563 2.407210 CTCGCCTCTCGCTGTCTC 59.593 66.667 0.00 0.00 38.27 3.36
563 564 3.821055 GCTCGCCTCTCGCTGTCT 61.821 66.667 0.00 0.00 38.27 3.41
564 565 4.121669 TGCTCGCCTCTCGCTGTC 62.122 66.667 0.00 0.00 38.27 3.51
565 566 4.427661 GTGCTCGCCTCTCGCTGT 62.428 66.667 0.00 0.00 38.27 4.40
568 569 2.356818 ATAAGGTGCTCGCCTCTCGC 62.357 60.000 2.04 0.00 38.03 5.03
569 570 0.952280 TATAAGGTGCTCGCCTCTCG 59.048 55.000 2.04 0.00 38.03 4.04
570 571 2.030628 GTCTATAAGGTGCTCGCCTCTC 60.031 54.545 2.04 0.00 38.03 3.20
571 572 1.957877 GTCTATAAGGTGCTCGCCTCT 59.042 52.381 2.04 0.00 38.03 3.69
572 573 1.335142 CGTCTATAAGGTGCTCGCCTC 60.335 57.143 2.04 0.00 38.03 4.70
573 574 0.669077 CGTCTATAAGGTGCTCGCCT 59.331 55.000 0.00 0.00 41.41 5.52
574 575 0.384669 ACGTCTATAAGGTGCTCGCC 59.615 55.000 0.00 0.00 0.00 5.54
575 576 3.243002 ACTTACGTCTATAAGGTGCTCGC 60.243 47.826 0.00 0.00 36.62 5.03
576 577 4.548991 ACTTACGTCTATAAGGTGCTCG 57.451 45.455 0.00 0.00 36.62 5.03
577 578 5.297776 TGGTACTTACGTCTATAAGGTGCTC 59.702 44.000 0.00 0.00 36.62 4.26
578 579 5.195940 TGGTACTTACGTCTATAAGGTGCT 58.804 41.667 0.00 0.00 36.62 4.40
579 580 5.505173 TGGTACTTACGTCTATAAGGTGC 57.495 43.478 0.00 0.00 36.62 5.01
580 581 6.567321 CGGATGGTACTTACGTCTATAAGGTG 60.567 46.154 0.00 0.00 36.62 4.00
581 582 5.471456 CGGATGGTACTTACGTCTATAAGGT 59.529 44.000 0.00 0.00 36.62 3.50
582 583 5.702670 TCGGATGGTACTTACGTCTATAAGG 59.297 44.000 0.00 0.00 36.62 2.69
583 584 6.791887 TCGGATGGTACTTACGTCTATAAG 57.208 41.667 0.00 0.00 38.03 1.73
584 585 7.750229 AATCGGATGGTACTTACGTCTATAA 57.250 36.000 0.00 0.00 0.00 0.98
585 586 7.308770 CCAAATCGGATGGTACTTACGTCTATA 60.309 40.741 0.00 0.00 36.56 1.31
586 587 6.444633 CAAATCGGATGGTACTTACGTCTAT 58.555 40.000 0.00 0.00 0.00 1.98
587 588 5.221106 CCAAATCGGATGGTACTTACGTCTA 60.221 44.000 0.00 0.00 36.56 2.59
588 589 4.441079 CCAAATCGGATGGTACTTACGTCT 60.441 45.833 0.00 0.00 36.56 4.18
589 590 3.800506 CCAAATCGGATGGTACTTACGTC 59.199 47.826 0.00 0.00 36.56 4.34
590 591 3.788937 CCAAATCGGATGGTACTTACGT 58.211 45.455 0.00 0.00 36.56 3.57
591 592 2.542595 GCCAAATCGGATGGTACTTACG 59.457 50.000 0.00 0.00 40.23 3.18
592 593 2.542595 CGCCAAATCGGATGGTACTTAC 59.457 50.000 0.00 0.00 40.23 2.34
593 594 2.828877 CGCCAAATCGGATGGTACTTA 58.171 47.619 0.00 0.00 40.23 2.24
594 595 1.663695 CGCCAAATCGGATGGTACTT 58.336 50.000 0.00 0.00 40.23 2.24
595 596 0.814010 GCGCCAAATCGGATGGTACT 60.814 55.000 0.00 0.00 40.23 2.73
596 597 1.092921 TGCGCCAAATCGGATGGTAC 61.093 55.000 4.18 0.00 40.23 3.34
597 598 0.813610 CTGCGCCAAATCGGATGGTA 60.814 55.000 4.18 0.00 40.23 3.25
598 599 2.045438 TGCGCCAAATCGGATGGT 60.045 55.556 4.18 0.00 40.23 3.55
599 600 2.717485 CTGCGCCAAATCGGATGG 59.283 61.111 4.18 0.00 41.08 3.51
600 601 2.025156 GCTGCGCCAAATCGGATG 59.975 61.111 4.18 0.00 36.56 3.51
601 602 3.576356 CGCTGCGCCAAATCGGAT 61.576 61.111 9.88 0.00 36.56 4.18
602 603 4.751093 TCGCTGCGCCAAATCGGA 62.751 61.111 18.65 0.00 36.56 4.55
603 604 4.228097 CTCGCTGCGCCAAATCGG 62.228 66.667 18.65 0.00 38.11 4.18
604 605 1.215014 TATCTCGCTGCGCCAAATCG 61.215 55.000 18.65 0.83 0.00 3.34
605 606 0.233332 GTATCTCGCTGCGCCAAATC 59.767 55.000 18.65 2.37 0.00 2.17
606 607 1.490693 CGTATCTCGCTGCGCCAAAT 61.491 55.000 18.65 9.94 0.00 2.32
607 608 2.164663 CGTATCTCGCTGCGCCAAA 61.165 57.895 18.65 0.00 0.00 3.28
608 609 2.582226 CGTATCTCGCTGCGCCAA 60.582 61.111 18.65 5.19 0.00 4.52
609 610 4.569023 CCGTATCTCGCTGCGCCA 62.569 66.667 18.65 6.16 38.35 5.69
612 613 3.026879 CTGCCGTATCTCGCTGCG 61.027 66.667 17.25 17.25 38.35 5.18
613 614 2.659897 CCTGCCGTATCTCGCTGC 60.660 66.667 0.00 0.00 38.35 5.25
614 615 2.016393 TTCCCTGCCGTATCTCGCTG 62.016 60.000 0.00 0.00 38.35 5.18
615 616 1.756950 TTCCCTGCCGTATCTCGCT 60.757 57.895 0.00 0.00 38.35 4.93
616 617 1.591863 GTTCCCTGCCGTATCTCGC 60.592 63.158 0.00 0.00 38.35 5.03
617 618 1.067582 GGTTCCCTGCCGTATCTCG 59.932 63.158 0.00 0.00 39.52 4.04
618 619 1.067582 CGGTTCCCTGCCGTATCTC 59.932 63.158 0.00 0.00 43.84 2.75
619 620 3.217231 CGGTTCCCTGCCGTATCT 58.783 61.111 0.00 0.00 43.84 1.98
636 637 3.121030 CTACAGCTGCACCGCACC 61.121 66.667 15.27 0.00 33.79 5.01
637 638 3.793144 GCTACAGCTGCACCGCAC 61.793 66.667 15.27 0.00 38.21 5.34
638 639 3.823397 TTGCTACAGCTGCACCGCA 62.823 57.895 15.27 14.22 40.40 5.69
639 640 3.031964 CTTGCTACAGCTGCACCGC 62.032 63.158 15.27 11.66 40.40 5.68
640 641 3.031964 GCTTGCTACAGCTGCACCG 62.032 63.158 15.27 0.35 40.40 4.94
641 642 2.873288 GCTTGCTACAGCTGCACC 59.127 61.111 15.27 2.09 40.40 5.01
647 648 1.068434 CTCCTCCTAGCTTGCTACAGC 59.932 57.143 0.00 0.00 40.44 4.40
648 649 2.383855 ACTCCTCCTAGCTTGCTACAG 58.616 52.381 0.00 0.00 0.00 2.74
649 650 2.497675 CAACTCCTCCTAGCTTGCTACA 59.502 50.000 0.00 0.00 0.00 2.74
650 651 2.159028 CCAACTCCTCCTAGCTTGCTAC 60.159 54.545 0.00 0.00 0.00 3.58
651 652 2.111384 CCAACTCCTCCTAGCTTGCTA 58.889 52.381 0.00 2.19 0.00 3.49
652 653 0.908198 CCAACTCCTCCTAGCTTGCT 59.092 55.000 0.00 0.00 0.00 3.91
653 654 0.746204 GCCAACTCCTCCTAGCTTGC 60.746 60.000 0.00 0.00 0.00 4.01
654 655 0.615331 TGCCAACTCCTCCTAGCTTG 59.385 55.000 0.00 0.00 0.00 4.01
655 656 1.003696 GTTGCCAACTCCTCCTAGCTT 59.996 52.381 0.00 0.00 0.00 3.74
656 657 0.615850 GTTGCCAACTCCTCCTAGCT 59.384 55.000 0.00 0.00 0.00 3.32
657 658 0.741221 CGTTGCCAACTCCTCCTAGC 60.741 60.000 5.96 0.00 0.00 3.42
658 659 0.895530 TCGTTGCCAACTCCTCCTAG 59.104 55.000 5.96 0.00 0.00 3.02
659 660 0.895530 CTCGTTGCCAACTCCTCCTA 59.104 55.000 5.96 0.00 0.00 2.94
660 661 1.122019 ACTCGTTGCCAACTCCTCCT 61.122 55.000 5.96 0.00 0.00 3.69
661 662 0.951040 CACTCGTTGCCAACTCCTCC 60.951 60.000 5.96 0.00 0.00 4.30
662 663 0.033504 TCACTCGTTGCCAACTCCTC 59.966 55.000 5.96 0.00 0.00 3.71
663 664 0.468226 TTCACTCGTTGCCAACTCCT 59.532 50.000 5.96 0.00 0.00 3.69
664 665 0.868406 CTTCACTCGTTGCCAACTCC 59.132 55.000 5.96 0.00 0.00 3.85
665 666 1.527311 GACTTCACTCGTTGCCAACTC 59.473 52.381 5.96 0.00 0.00 3.01
666 667 1.139058 AGACTTCACTCGTTGCCAACT 59.861 47.619 5.96 0.00 0.00 3.16
667 668 1.261619 CAGACTTCACTCGTTGCCAAC 59.738 52.381 0.00 0.00 0.00 3.77
668 669 1.138069 TCAGACTTCACTCGTTGCCAA 59.862 47.619 0.00 0.00 0.00 4.52
669 670 0.750249 TCAGACTTCACTCGTTGCCA 59.250 50.000 0.00 0.00 0.00 4.92
670 671 1.865865 TTCAGACTTCACTCGTTGCC 58.134 50.000 0.00 0.00 0.00 4.52
674 675 4.058817 GGTTGATTTCAGACTTCACTCGT 58.941 43.478 0.00 0.00 0.00 4.18
675 676 4.310769 AGGTTGATTTCAGACTTCACTCG 58.689 43.478 0.00 0.00 0.00 4.18
786 788 5.129368 TCCTGGCCTAAAATGAGCTTAAT 57.871 39.130 3.32 0.00 0.00 1.40
898 900 5.880887 GTCGAACCCTAGAAAAATTCCTCAT 59.119 40.000 0.00 0.00 0.00 2.90
933 942 0.462789 GATCGAAGTCGCCCCCTTTA 59.537 55.000 0.00 0.00 39.60 1.85
1034 1044 4.849329 GTCGAATCGCTCCGCCGT 62.849 66.667 0.00 0.00 0.00 5.68
1313 1379 2.236146 ACACGCAGGAATGGAGATGTTA 59.764 45.455 0.00 0.00 0.00 2.41
1363 1429 2.865670 GCAACATCATCCTCTAGCTCCG 60.866 54.545 0.00 0.00 0.00 4.63
1467 1534 0.330604 ATTGATGCACCAGCTCCACT 59.669 50.000 0.00 0.00 42.74 4.00
1546 1613 7.757242 AAGATCATCCCTAGAACTAAACCTT 57.243 36.000 0.00 0.00 0.00 3.50
1809 1939 6.046885 ACAAAATTTTGCAAACTGAATCGG 57.953 33.333 26.94 2.71 41.79 4.18
1826 1956 4.277476 TGACACTTCCAACCTGACAAAAT 58.723 39.130 0.00 0.00 0.00 1.82
2171 2363 5.338463 GCTATGGGAACTAAACCTGAGAACT 60.338 44.000 0.00 0.00 0.00 3.01
2176 2368 3.844211 AGTGCTATGGGAACTAAACCTGA 59.156 43.478 0.00 0.00 30.53 3.86
2270 5995 3.220999 CTGTTCCTCGTCCACGGCA 62.221 63.158 0.00 0.00 40.29 5.69
2301 6026 1.990614 AGTTCGCCCCTTCCTCTCC 60.991 63.158 0.00 0.00 0.00 3.71
2303 6028 2.294078 CCAGTTCGCCCCTTCCTCT 61.294 63.158 0.00 0.00 0.00 3.69
2310 6035 2.269241 CTCCTTCCAGTTCGCCCC 59.731 66.667 0.00 0.00 0.00 5.80
2328 6053 2.047179 GACCAACTCGCTGACCCC 60.047 66.667 0.00 0.00 0.00 4.95
2332 6059 4.373116 GCCGGACCAACTCGCTGA 62.373 66.667 5.05 0.00 0.00 4.26
2345 6072 1.957562 CTATACCTGGTCGAGCCGG 59.042 63.158 21.66 21.66 43.41 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.