Multiple sequence alignment - TraesCS3D01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G143100 chr3D 100.000 3056 0 0 1 3056 105444654 105447709 0.000000e+00 5644.0
1 TraesCS3D01G143100 chr3D 98.478 2497 33 4 561 3056 239582361 239579869 0.000000e+00 4396.0
2 TraesCS3D01G143100 chr3D 97.916 2495 47 2 567 3056 566430260 566427766 0.000000e+00 4314.0
3 TraesCS3D01G143100 chr7D 98.199 2498 43 1 561 3056 484418691 484421188 0.000000e+00 4362.0
4 TraesCS3D01G143100 chr7D 97.627 2528 51 5 535 3056 16031451 16028927 0.000000e+00 4327.0
5 TraesCS3D01G143100 chr7D 95.652 46 1 1 1 45 326044616 326044661 4.230000e-09 73.1
6 TraesCS3D01G143100 chr5D 98.160 2500 41 2 562 3056 12216676 12219175 0.000000e+00 4357.0
7 TraesCS3D01G143100 chr5D 89.024 82 6 2 1 80 187945484 187945564 6.970000e-17 99.0
8 TraesCS3D01G143100 chr5D 80.374 107 14 5 1 104 220702427 220702325 1.180000e-09 75.0
9 TraesCS3D01G143100 chr1D 98.122 2502 42 2 560 3056 89557377 89554876 0.000000e+00 4355.0
10 TraesCS3D01G143100 chr1D 98.078 2497 42 4 562 3056 59121549 59119057 0.000000e+00 4340.0
11 TraesCS3D01G143100 chr6D 97.738 2520 48 4 540 3056 402837066 402834553 0.000000e+00 4329.0
12 TraesCS3D01G143100 chr6D 79.195 149 23 8 1 143 305998493 305998347 2.510000e-16 97.1
13 TraesCS3D01G143100 chr6D 81.481 108 10 6 1 104 32631283 32631182 2.530000e-11 80.5
14 TraesCS3D01G143100 chr2D 97.838 2498 52 1 561 3056 126138487 126140984 0.000000e+00 4313.0
15 TraesCS3D01G143100 chr7A 85.331 2686 345 34 383 3056 727353903 727351255 0.000000e+00 2732.0
16 TraesCS3D01G143100 chr7A 82.690 1502 222 26 383 1880 727346586 727345119 0.000000e+00 1299.0
17 TraesCS3D01G143100 chr7A 92.694 219 16 0 178 396 727354076 727353858 1.770000e-82 316.0
18 TraesCS3D01G143100 chr7A 91.071 224 20 0 173 396 727346764 727346541 1.380000e-78 303.0
19 TraesCS3D01G143100 chr7A 86.822 129 11 4 1 129 727354954 727354832 4.110000e-29 139.0
20 TraesCS3D01G143100 chr7A 85.271 129 13 1 1 129 727347638 727347516 8.890000e-26 128.0
21 TraesCS3D01G143100 chr4A 80.986 142 19 7 8 143 575711597 575711458 4.170000e-19 106.0
22 TraesCS3D01G143100 chr1A 80.420 143 19 7 8 143 107936671 107936811 1.940000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G143100 chr3D 105444654 105447709 3055 False 5644.0 5644 100.000000 1 3056 1 chr3D.!!$F1 3055
1 TraesCS3D01G143100 chr3D 239579869 239582361 2492 True 4396.0 4396 98.478000 561 3056 1 chr3D.!!$R1 2495
2 TraesCS3D01G143100 chr3D 566427766 566430260 2494 True 4314.0 4314 97.916000 567 3056 1 chr3D.!!$R2 2489
3 TraesCS3D01G143100 chr7D 484418691 484421188 2497 False 4362.0 4362 98.199000 561 3056 1 chr7D.!!$F2 2495
4 TraesCS3D01G143100 chr7D 16028927 16031451 2524 True 4327.0 4327 97.627000 535 3056 1 chr7D.!!$R1 2521
5 TraesCS3D01G143100 chr5D 12216676 12219175 2499 False 4357.0 4357 98.160000 562 3056 1 chr5D.!!$F1 2494
6 TraesCS3D01G143100 chr1D 89554876 89557377 2501 True 4355.0 4355 98.122000 560 3056 1 chr1D.!!$R2 2496
7 TraesCS3D01G143100 chr1D 59119057 59121549 2492 True 4340.0 4340 98.078000 562 3056 1 chr1D.!!$R1 2494
8 TraesCS3D01G143100 chr6D 402834553 402837066 2513 True 4329.0 4329 97.738000 540 3056 1 chr6D.!!$R3 2516
9 TraesCS3D01G143100 chr2D 126138487 126140984 2497 False 4313.0 4313 97.838000 561 3056 1 chr2D.!!$F1 2495
10 TraesCS3D01G143100 chr7A 727345119 727354954 9835 True 819.5 2732 87.313167 1 3056 6 chr7A.!!$R1 3055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 1075 0.591659 CTCGCCGGATCTCATCGTTA 59.408 55.0 5.05 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2807 0.779997 AAGCCAGTCCAACTCCCAAT 59.22 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.358193 TATTGATCCACCCCGCGTCG 62.358 60.000 4.92 0.00 0.00 5.12
60 61 4.487412 CCGCGTCGTCACCCCTAC 62.487 72.222 4.92 0.00 0.00 3.18
61 62 4.824166 CGCGTCGTCACCCCTACG 62.824 72.222 0.00 0.00 41.64 3.51
64 65 2.327343 CGTCGTCACCCCTACGTGA 61.327 63.158 0.00 0.00 40.44 4.35
79 80 4.742201 TGACCGCCGCTGCTCTTC 62.742 66.667 0.00 0.00 34.43 2.87
120 121 3.013932 CAGGCCTGCTCCTTCCCT 61.014 66.667 22.33 0.00 33.25 4.20
142 871 1.672356 CAGGTCAACTCCAAGCCGG 60.672 63.158 0.00 0.00 0.00 6.13
152 881 1.269723 CTCCAAGCCGGTTTTTCTTCC 59.730 52.381 0.00 0.00 35.57 3.46
154 883 1.036707 CAAGCCGGTTTTTCTTCCCA 58.963 50.000 0.00 0.00 0.00 4.37
155 884 1.618343 CAAGCCGGTTTTTCTTCCCAT 59.382 47.619 0.00 0.00 0.00 4.00
156 885 1.256812 AGCCGGTTTTTCTTCCCATG 58.743 50.000 1.90 0.00 0.00 3.66
157 886 0.966179 GCCGGTTTTTCTTCCCATGT 59.034 50.000 1.90 0.00 0.00 3.21
158 887 1.343142 GCCGGTTTTTCTTCCCATGTT 59.657 47.619 1.90 0.00 0.00 2.71
159 888 2.609491 GCCGGTTTTTCTTCCCATGTTC 60.609 50.000 1.90 0.00 0.00 3.18
160 889 2.029380 CCGGTTTTTCTTCCCATGTTCC 60.029 50.000 0.00 0.00 0.00 3.62
161 890 2.351350 CGGTTTTTCTTCCCATGTTCCG 60.351 50.000 0.00 0.00 0.00 4.30
162 891 2.609491 GGTTTTTCTTCCCATGTTCCGC 60.609 50.000 0.00 0.00 0.00 5.54
163 892 1.253100 TTTTCTTCCCATGTTCCGCC 58.747 50.000 0.00 0.00 0.00 6.13
164 893 0.610785 TTTCTTCCCATGTTCCGCCC 60.611 55.000 0.00 0.00 0.00 6.13
165 894 2.813226 TTCTTCCCATGTTCCGCCCG 62.813 60.000 0.00 0.00 0.00 6.13
166 895 3.622060 CTTCCCATGTTCCGCCCGT 62.622 63.158 0.00 0.00 0.00 5.28
167 896 3.910914 TTCCCATGTTCCGCCCGTG 62.911 63.158 0.00 0.00 0.00 4.94
169 898 4.402528 CCATGTTCCGCCCGTGGA 62.403 66.667 0.00 0.00 40.75 4.02
170 899 3.124921 CATGTTCCGCCCGTGGAC 61.125 66.667 0.00 0.00 37.89 4.02
171 900 4.404098 ATGTTCCGCCCGTGGACC 62.404 66.667 0.00 0.00 37.89 4.46
191 920 2.161486 GCTCTGTGGCACGATCGAC 61.161 63.158 24.34 13.18 0.00 4.20
213 942 0.673956 GACCCGGTCCTTCTCTTTGC 60.674 60.000 6.25 0.00 0.00 3.68
247 976 2.897350 GGCTCCCGATCTTTGCCG 60.897 66.667 0.00 0.00 33.96 5.69
253 982 2.464459 CCGATCTTTGCCGCCAGAC 61.464 63.158 0.00 0.00 0.00 3.51
297 1026 4.514577 CCCGTTGCCGATCTCGCT 62.515 66.667 3.65 0.00 38.18 4.93
306 1035 1.742146 CGATCTCGCTGGATCCCAA 59.258 57.895 9.90 0.00 38.97 4.12
345 1074 1.360551 CTCGCCGGATCTCATCGTT 59.639 57.895 5.05 0.00 0.00 3.85
346 1075 0.591659 CTCGCCGGATCTCATCGTTA 59.408 55.000 5.05 0.00 0.00 3.18
361 1090 1.951631 GTTAGCTGCCGATCTCCGC 60.952 63.158 0.00 0.00 36.84 5.54
368 1097 3.680786 CCGATCTCCGCCGCCATA 61.681 66.667 0.00 0.00 36.84 2.74
373 1102 4.545706 CTCCGCCGCCATAGCCAA 62.546 66.667 0.00 0.00 34.57 4.52
378 1107 0.594796 CGCCGCCATAGCCAAATTTC 60.595 55.000 0.00 0.00 34.57 2.17
380 1109 0.594796 CCGCCATAGCCAAATTTCGC 60.595 55.000 0.00 0.00 34.57 4.70
381 1110 0.594796 CGCCATAGCCAAATTTCGCC 60.595 55.000 4.01 0.00 34.57 5.54
382 1111 0.594796 GCCATAGCCAAATTTCGCCG 60.595 55.000 4.01 0.00 0.00 6.46
383 1112 0.594796 CCATAGCCAAATTTCGCCGC 60.595 55.000 4.01 0.00 0.00 6.53
384 1113 0.594796 CATAGCCAAATTTCGCCGCC 60.595 55.000 4.01 0.00 0.00 6.13
385 1114 2.058829 ATAGCCAAATTTCGCCGCCG 62.059 55.000 4.01 0.00 0.00 6.46
386 1115 4.413800 GCCAAATTTCGCCGCCGT 62.414 61.111 0.00 0.00 35.54 5.68
387 1116 2.257067 CCAAATTTCGCCGCCGTT 59.743 55.556 0.00 0.00 35.54 4.44
388 1117 1.799916 CCAAATTTCGCCGCCGTTC 60.800 57.895 0.00 0.00 35.54 3.95
389 1118 1.209127 CAAATTTCGCCGCCGTTCT 59.791 52.632 0.00 0.00 35.54 3.01
390 1119 0.793104 CAAATTTCGCCGCCGTTCTC 60.793 55.000 0.00 0.00 35.54 2.87
391 1120 1.918868 AAATTTCGCCGCCGTTCTCC 61.919 55.000 0.00 0.00 35.54 3.71
400 1129 4.215742 CCGTTCTCCGCCGCCATA 62.216 66.667 0.00 0.00 34.38 2.74
401 1130 2.658593 CGTTCTCCGCCGCCATAG 60.659 66.667 0.00 0.00 0.00 2.23
402 1131 2.967615 GTTCTCCGCCGCCATAGC 60.968 66.667 0.00 0.00 0.00 2.97
403 1132 4.235762 TTCTCCGCCGCCATAGCC 62.236 66.667 0.00 0.00 34.57 3.93
405 1134 4.545706 CTCCGCCGCCATAGCCAA 62.546 66.667 0.00 0.00 34.57 4.52
406 1135 4.102815 TCCGCCGCCATAGCCAAA 62.103 61.111 0.00 0.00 34.57 3.28
407 1136 2.906897 CCGCCGCCATAGCCAAAT 60.907 61.111 0.00 0.00 34.57 2.32
408 1137 2.489275 CCGCCGCCATAGCCAAATT 61.489 57.895 0.00 0.00 34.57 1.82
409 1138 1.437160 CGCCGCCATAGCCAAATTT 59.563 52.632 0.00 0.00 34.57 1.82
410 1139 0.594796 CGCCGCCATAGCCAAATTTC 60.595 55.000 0.00 0.00 34.57 2.17
411 1140 0.594796 GCCGCCATAGCCAAATTTCG 60.595 55.000 0.00 0.00 34.57 3.46
412 1141 0.594796 CCGCCATAGCCAAATTTCGC 60.595 55.000 0.00 0.00 34.57 4.70
443 1172 4.315122 CGTCCTCGCCGGATCTCG 62.315 72.222 5.05 0.00 45.44 4.04
454 1183 1.591863 GGATCTCGCCGCCAACTAC 60.592 63.158 0.00 0.00 0.00 2.73
455 1184 1.591863 GATCTCGCCGCCAACTACC 60.592 63.158 0.00 0.00 0.00 3.18
511 1241 3.449042 CGGTCTTCGTCGTTCTGC 58.551 61.111 0.00 0.00 0.00 4.26
512 1242 1.081376 CGGTCTTCGTCGTTCTGCT 60.081 57.895 0.00 0.00 0.00 4.24
513 1243 1.337817 CGGTCTTCGTCGTTCTGCTG 61.338 60.000 0.00 0.00 0.00 4.41
514 1244 1.618640 GGTCTTCGTCGTTCTGCTGC 61.619 60.000 0.00 0.00 0.00 5.25
515 1245 0.664767 GTCTTCGTCGTTCTGCTGCT 60.665 55.000 0.00 0.00 0.00 4.24
516 1246 0.664466 TCTTCGTCGTTCTGCTGCTG 60.664 55.000 0.00 0.00 0.00 4.41
517 1247 2.220455 CTTCGTCGTTCTGCTGCTGC 62.220 60.000 8.89 8.89 40.20 5.25
518 1248 3.782244 CGTCGTTCTGCTGCTGCC 61.782 66.667 13.47 0.00 38.71 4.85
519 1249 2.358003 GTCGTTCTGCTGCTGCCT 60.358 61.111 13.47 0.00 38.71 4.75
520 1250 2.047844 TCGTTCTGCTGCTGCCTC 60.048 61.111 13.47 0.38 38.71 4.70
521 1251 2.047465 CGTTCTGCTGCTGCCTCT 60.047 61.111 13.47 0.00 38.71 3.69
522 1252 2.389020 CGTTCTGCTGCTGCCTCTG 61.389 63.158 13.47 1.31 38.71 3.35
523 1253 2.359602 TTCTGCTGCTGCCTCTGC 60.360 61.111 13.47 0.00 38.71 4.26
538 1268 1.805945 CTGCCTTCGTACGTCTGCC 60.806 63.158 16.05 2.26 0.00 4.85
1007 1739 5.026121 TCCTACTGTCTTTCAGATGTGGAT 58.974 41.667 1.79 0.00 46.27 3.41
1034 1766 1.144936 GTCAGCGCTATGAGCCCTT 59.855 57.895 10.99 0.00 38.18 3.95
1325 2057 1.071605 GCGCTTTCAGAGATTCGTGT 58.928 50.000 0.00 0.00 0.00 4.49
1545 2277 2.031157 GTGCTACACAAAGCGGAAACAT 60.031 45.455 0.00 0.00 45.85 2.71
1593 2325 1.825474 GGGACTTCGTCATCTCCTTCA 59.175 52.381 0.00 0.00 33.68 3.02
1826 2558 2.024414 TCTTCGATCGCTGGATTCTCA 58.976 47.619 11.09 0.00 31.51 3.27
2113 2853 3.505790 TTCCGCTGCCACCACCATT 62.506 57.895 0.00 0.00 0.00 3.16
2798 3538 0.395312 GGGTGGTGTTCCTTTCGAGA 59.605 55.000 0.00 0.00 34.23 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.189521 GACGCGGGGTGGATCAAT 59.810 61.111 12.47 0.00 0.00 2.57
74 75 0.674895 CGGCAACAAGGGAGGAAGAG 60.675 60.000 0.00 0.00 0.00 2.85
75 76 1.374947 CGGCAACAAGGGAGGAAGA 59.625 57.895 0.00 0.00 0.00 2.87
76 77 2.335712 GCGGCAACAAGGGAGGAAG 61.336 63.158 0.00 0.00 0.00 3.46
77 78 2.282180 GCGGCAACAAGGGAGGAA 60.282 61.111 0.00 0.00 0.00 3.36
78 79 3.249189 AGCGGCAACAAGGGAGGA 61.249 61.111 1.45 0.00 0.00 3.71
79 80 3.058160 CAGCGGCAACAAGGGAGG 61.058 66.667 1.45 0.00 0.00 4.30
120 121 0.250467 GCTTGGAGTTGACCTGCAGA 60.250 55.000 17.39 0.00 42.96 4.26
142 871 2.609491 GGCGGAACATGGGAAGAAAAAC 60.609 50.000 0.00 0.00 0.00 2.43
152 881 4.402528 TCCACGGGCGGAACATGG 62.403 66.667 0.00 0.00 29.93 3.66
154 883 4.404098 GGTCCACGGGCGGAACAT 62.404 66.667 0.00 0.00 42.83 2.71
163 892 4.742201 CACAGAGCGGGTCCACGG 62.742 72.222 3.13 0.00 0.00 4.94
164 893 4.742201 CCACAGAGCGGGTCCACG 62.742 72.222 3.13 0.00 0.00 4.94
170 899 4.457496 ATCGTGCCACAGAGCGGG 62.457 66.667 0.00 0.00 34.65 6.13
171 900 2.887568 GATCGTGCCACAGAGCGG 60.888 66.667 0.00 0.00 34.65 5.52
172 901 3.250323 CGATCGTGCCACAGAGCG 61.250 66.667 7.03 11.46 39.83 5.03
173 902 2.161486 GTCGATCGTGCCACAGAGC 61.161 63.158 15.94 0.00 0.00 4.09
174 903 0.799917 CTGTCGATCGTGCCACAGAG 60.800 60.000 23.18 5.58 38.90 3.35
175 904 1.212751 CTGTCGATCGTGCCACAGA 59.787 57.895 23.18 0.00 38.90 3.41
176 905 1.807165 CCTGTCGATCGTGCCACAG 60.807 63.158 21.52 21.52 36.75 3.66
184 913 3.122250 GACCGGGTCCTGTCGATCG 62.122 68.421 16.55 9.36 0.00 3.69
210 939 0.528017 AGAGAAGACGCTCGATGCAA 59.472 50.000 0.00 0.00 43.06 4.08
213 942 0.869454 GCCAGAGAAGACGCTCGATG 60.869 60.000 0.00 0.00 39.87 3.84
297 1026 2.354729 CGGCAGGTTTGGGATCCA 59.645 61.111 15.23 0.00 0.00 3.41
361 1090 0.594796 GCGAAATTTGGCTATGGCGG 60.595 55.000 16.91 0.00 39.81 6.13
366 1095 1.733526 GGCGGCGAAATTTGGCTAT 59.266 52.632 22.17 0.00 32.12 2.97
368 1097 4.114997 CGGCGGCGAAATTTGGCT 62.115 61.111 29.19 0.00 32.12 4.75
373 1102 2.396157 GGAGAACGGCGGCGAAATT 61.396 57.895 38.93 22.14 0.00 1.82
383 1112 4.215742 TATGGCGGCGGAGAACGG 62.216 66.667 9.78 0.00 44.51 4.44
385 1114 2.967615 GCTATGGCGGCGGAGAAC 60.968 66.667 9.78 0.00 0.00 3.01
386 1115 4.235762 GGCTATGGCGGCGGAGAA 62.236 66.667 9.78 0.00 39.81 2.87
388 1117 4.545706 TTGGCTATGGCGGCGGAG 62.546 66.667 9.78 4.92 39.81 4.63
389 1118 2.902423 AATTTGGCTATGGCGGCGGA 62.902 55.000 9.78 0.00 39.81 5.54
390 1119 2.015227 AAATTTGGCTATGGCGGCGG 62.015 55.000 9.78 0.00 39.81 6.13
391 1120 0.594796 GAAATTTGGCTATGGCGGCG 60.595 55.000 0.51 0.51 39.81 6.46
392 1121 0.594796 CGAAATTTGGCTATGGCGGC 60.595 55.000 0.00 0.00 39.81 6.53
393 1122 0.594796 GCGAAATTTGGCTATGGCGG 60.595 55.000 16.91 0.00 39.81 6.13
394 1123 0.594796 GGCGAAATTTGGCTATGGCG 60.595 55.000 22.17 6.25 39.81 5.69
395 1124 0.594796 CGGCGAAATTTGGCTATGGC 60.595 55.000 22.17 6.70 37.82 4.40
396 1125 0.594796 GCGGCGAAATTTGGCTATGG 60.595 55.000 22.17 11.74 32.12 2.74
397 1126 0.594796 GGCGGCGAAATTTGGCTATG 60.595 55.000 22.17 14.26 32.12 2.23
398 1127 1.733526 GGCGGCGAAATTTGGCTAT 59.266 52.632 22.17 0.00 32.12 2.97
399 1128 2.756025 CGGCGGCGAAATTTGGCTA 61.756 57.895 29.19 0.00 32.12 3.93
400 1129 4.114997 CGGCGGCGAAATTTGGCT 62.115 61.111 29.19 0.00 32.12 4.75
401 1130 3.907481 AACGGCGGCGAAATTTGGC 62.907 57.895 38.93 16.03 0.00 4.52
402 1131 1.799916 GAACGGCGGCGAAATTTGG 60.800 57.895 38.93 6.53 0.00 3.28
403 1132 0.793104 GAGAACGGCGGCGAAATTTG 60.793 55.000 38.93 7.38 0.00 2.32
404 1133 1.500396 GAGAACGGCGGCGAAATTT 59.500 52.632 38.93 21.74 0.00 1.82
405 1134 2.396157 GGAGAACGGCGGCGAAATT 61.396 57.895 38.93 22.14 0.00 1.82
406 1135 2.818274 GGAGAACGGCGGCGAAAT 60.818 61.111 38.93 22.62 0.00 2.17
438 1167 2.499685 GGTAGTTGGCGGCGAGAT 59.500 61.111 12.98 0.00 0.00 2.75
443 1172 1.670083 AGAAACGGTAGTTGGCGGC 60.670 57.895 0.00 0.00 41.05 6.53
498 1228 1.777819 CAGCAGCAGAACGACGAAG 59.222 57.895 0.00 0.00 0.00 3.79
499 1229 2.310233 GCAGCAGCAGAACGACGAA 61.310 57.895 0.00 0.00 41.58 3.85
500 1230 2.734723 GCAGCAGCAGAACGACGA 60.735 61.111 0.00 0.00 41.58 4.20
501 1231 3.782244 GGCAGCAGCAGAACGACG 61.782 66.667 2.65 0.00 44.61 5.12
502 1232 2.358003 AGGCAGCAGCAGAACGAC 60.358 61.111 2.65 0.00 44.61 4.34
503 1233 2.047844 GAGGCAGCAGCAGAACGA 60.048 61.111 2.65 0.00 44.61 3.85
504 1234 2.047465 AGAGGCAGCAGCAGAACG 60.047 61.111 2.65 0.00 44.61 3.95
505 1235 2.688794 GCAGAGGCAGCAGCAGAAC 61.689 63.158 2.65 0.00 44.61 3.01
506 1236 2.359602 GCAGAGGCAGCAGCAGAA 60.360 61.111 2.65 0.00 44.61 3.02
507 1237 4.405671 GGCAGAGGCAGCAGCAGA 62.406 66.667 2.65 0.00 44.61 4.26
508 1238 3.921936 AAGGCAGAGGCAGCAGCAG 62.922 63.158 2.65 0.00 44.61 4.24
509 1239 3.914579 GAAGGCAGAGGCAGCAGCA 62.915 63.158 2.65 0.00 44.61 4.41
510 1240 3.132801 GAAGGCAGAGGCAGCAGC 61.133 66.667 0.00 0.00 43.71 5.25
511 1241 2.230994 TACGAAGGCAGAGGCAGCAG 62.231 60.000 0.00 0.00 43.71 4.24
512 1242 2.282783 TACGAAGGCAGAGGCAGCA 61.283 57.895 0.00 0.00 43.71 4.41
513 1243 1.811679 GTACGAAGGCAGAGGCAGC 60.812 63.158 0.00 0.00 43.71 5.25
514 1244 1.517257 CGTACGAAGGCAGAGGCAG 60.517 63.158 10.44 0.00 43.71 4.85
515 1245 2.209064 GACGTACGAAGGCAGAGGCA 62.209 60.000 24.41 0.00 43.71 4.75
516 1246 1.516603 GACGTACGAAGGCAGAGGC 60.517 63.158 24.41 0.00 40.13 4.70
517 1247 0.179161 CAGACGTACGAAGGCAGAGG 60.179 60.000 24.41 0.00 0.00 3.69
518 1248 0.798771 GCAGACGTACGAAGGCAGAG 60.799 60.000 24.41 3.79 0.00 3.35
519 1249 1.211969 GCAGACGTACGAAGGCAGA 59.788 57.895 24.41 0.00 0.00 4.26
520 1250 1.805945 GGCAGACGTACGAAGGCAG 60.806 63.158 24.41 6.42 0.00 4.85
521 1251 2.260434 GGCAGACGTACGAAGGCA 59.740 61.111 24.41 0.00 0.00 4.75
522 1252 1.805945 CAGGCAGACGTACGAAGGC 60.806 63.158 24.41 21.05 0.00 4.35
523 1253 0.038526 AACAGGCAGACGTACGAAGG 60.039 55.000 24.41 11.14 0.00 3.46
538 1268 1.656441 GTCAACCAGCAGGCAACAG 59.344 57.895 0.00 0.00 39.06 3.16
1034 1766 5.192927 CAGAAAGGTATAAGGCATCACCAA 58.807 41.667 0.46 0.00 43.14 3.67
1325 2057 2.166459 CCACATAAGCGAGTCTCCTCAA 59.834 50.000 0.00 0.00 37.59 3.02
1342 2074 2.126596 CCAGCAAACCAGCACCACA 61.127 57.895 0.00 0.00 36.85 4.17
1826 2558 4.011966 TCAGCAGTGAAGACATGAACAT 57.988 40.909 0.00 0.00 0.00 2.71
2067 2807 0.779997 AAGCCAGTCCAACTCCCAAT 59.220 50.000 0.00 0.00 0.00 3.16
2113 2853 2.217038 AGAAGCGGAGGAACTGGCA 61.217 57.895 0.00 0.00 41.55 4.92
2798 3538 3.006537 TCGGGAGAACGATCAAAAAGACT 59.993 43.478 0.00 0.00 38.06 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.