Multiple sequence alignment - TraesCS3D01G142800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G142800 chr3D 100.000 2270 0 0 1 2270 104813616 104815885 0.000000e+00 4193.0
1 TraesCS3D01G142800 chr3D 92.962 611 42 1 1660 2270 104820725 104821334 0.000000e+00 889.0
2 TraesCS3D01G142800 chr3D 92.647 612 44 1 1660 2270 58049128 58049739 0.000000e+00 880.0
3 TraesCS3D01G142800 chr3D 90.272 257 23 2 837 1092 118422582 118422327 3.610000e-88 335.0
4 TraesCS3D01G142800 chr3D 95.105 143 4 2 160 301 234620197 234620337 2.930000e-54 222.0
5 TraesCS3D01G142800 chr3D 99.038 104 1 0 48 151 612798788 612798891 1.070000e-43 187.0
6 TraesCS3D01G142800 chr3D 98.039 102 2 0 48 149 234616155 234616054 6.440000e-41 178.0
7 TraesCS3D01G142800 chr3D 85.976 164 18 3 677 839 118424932 118424773 1.080000e-38 171.0
8 TraesCS3D01G142800 chr3D 91.250 80 6 1 530 609 118425131 118425053 8.570000e-20 108.0
9 TraesCS3D01G142800 chr7B 88.434 1098 54 23 352 1418 511298925 511297870 0.000000e+00 1256.0
10 TraesCS3D01G142800 chr7B 95.238 63 2 1 302 363 511299173 511299111 5.160000e-17 99.0
11 TraesCS3D01G142800 chr7D 87.753 890 69 13 1409 2270 519402288 519403165 0.000000e+00 1003.0
12 TraesCS3D01G142800 chr7D 92.508 614 32 9 673 1281 484411832 484411228 0.000000e+00 867.0
13 TraesCS3D01G142800 chr7D 89.216 306 17 2 352 654 484412179 484411887 3.560000e-98 368.0
14 TraesCS3D01G142800 chr7D 86.266 233 6 3 1411 1617 423695524 423695292 1.750000e-56 230.0
15 TraesCS3D01G142800 chr7D 95.070 142 5 1 160 301 29149266 29149127 2.930000e-54 222.0
16 TraesCS3D01G142800 chr7D 85.841 113 3 4 1318 1418 484401739 484401628 8.570000e-20 108.0
17 TraesCS3D01G142800 chr7D 96.610 59 2 0 302 360 484412267 484412209 5.160000e-17 99.0
18 TraesCS3D01G142800 chr2D 93.290 611 41 0 1660 2270 586128466 586127856 0.000000e+00 902.0
19 TraesCS3D01G142800 chr2D 92.962 611 43 0 1660 2270 126964860 126965470 0.000000e+00 891.0
20 TraesCS3D01G142800 chr2D 92.962 611 43 0 1660 2270 552732095 552731485 0.000000e+00 891.0
21 TraesCS3D01G142800 chr2D 86.268 284 6 8 1413 1663 593401692 593401409 6.180000e-71 278.0
22 TraesCS3D01G142800 chr2D 84.892 278 6 9 1413 1663 586114655 586114387 4.840000e-62 248.0
23 TraesCS3D01G142800 chr2D 95.745 141 3 3 162 301 161360794 161360932 8.160000e-55 224.0
24 TraesCS3D01G142800 chr2D 100.000 51 0 0 1 51 88140822 88140872 6.680000e-16 95.3
25 TraesCS3D01G142800 chr1B 93.290 611 41 0 1660 2270 659526629 659526019 0.000000e+00 902.0
26 TraesCS3D01G142800 chr5D 92.799 611 44 0 1660 2270 246018977 246019587 0.000000e+00 885.0
27 TraesCS3D01G142800 chr5D 86.525 282 9 7 1405 1659 421145518 421145797 1.330000e-72 283.0
28 TraesCS3D01G142800 chr5D 86.282 277 12 4 1413 1663 480484123 480483847 6.180000e-71 278.0
29 TraesCS3D01G142800 chr5D 95.172 145 6 1 160 303 540011565 540011421 6.310000e-56 228.0
30 TraesCS3D01G142800 chr5D 98.077 104 2 0 48 151 494064220 494064323 4.980000e-42 182.0
31 TraesCS3D01G142800 chr5D 100.000 51 0 0 1 51 395707638 395707688 6.680000e-16 95.3
32 TraesCS3D01G142800 chr5D 100.000 51 0 0 1 51 531458132 531458082 6.680000e-16 95.3
33 TraesCS3D01G142800 chr1D 92.799 611 44 0 1660 2270 421873724 421874334 0.000000e+00 885.0
34 TraesCS3D01G142800 chr1D 85.211 284 9 12 1413 1663 412791588 412791305 6.220000e-66 261.0
35 TraesCS3D01G142800 chr1D 95.105 143 4 2 160 301 303230029 303230169 2.930000e-54 222.0
36 TraesCS3D01G142800 chr1D 83.721 258 15 7 1410 1640 462019068 462019325 3.800000e-53 219.0
37 TraesCS3D01G142800 chr1D 98.182 110 1 1 1414 1522 401202198 401202307 8.280000e-45 191.0
38 TraesCS3D01G142800 chr1D 97.059 102 3 0 48 149 31037355 31037456 3.000000e-39 172.0
39 TraesCS3D01G142800 chr1D 97.059 102 3 0 48 149 473654291 473654190 3.000000e-39 172.0
40 TraesCS3D01G142800 chr1D 100.000 51 0 0 1 51 20718537 20718487 6.680000e-16 95.3
41 TraesCS3D01G142800 chr5A 84.842 884 68 28 1414 2270 619753355 619752511 0.000000e+00 830.0
42 TraesCS3D01G142800 chr5A 100.000 52 0 0 1 52 426702558 426702609 1.860000e-16 97.1
43 TraesCS3D01G142800 chr3A 91.886 493 21 9 943 1418 550633076 550632586 0.000000e+00 671.0
44 TraesCS3D01G142800 chr3A 90.489 368 25 5 302 661 550633786 550633421 5.670000e-131 477.0
45 TraesCS3D01G142800 chr3A 95.848 289 10 1 673 959 550633380 550633092 1.230000e-127 466.0
46 TraesCS3D01G142800 chr6D 88.646 229 17 6 1414 1640 314057830 314058051 1.030000e-68 270.0
47 TraesCS3D01G142800 chr6D 98.039 102 2 0 48 149 339391926 339391825 6.440000e-41 178.0
48 TraesCS3D01G142800 chr6D 97.059 102 3 0 48 149 85975555 85975656 3.000000e-39 172.0
49 TraesCS3D01G142800 chr6D 97.059 102 3 0 48 149 451920345 451920446 3.000000e-39 172.0
50 TraesCS3D01G142800 chr6D 97.059 102 3 0 48 149 464034841 464034740 3.000000e-39 172.0
51 TraesCS3D01G142800 chr6D 100.000 51 0 0 1 51 80566372 80566322 6.680000e-16 95.3
52 TraesCS3D01G142800 chr4B 85.870 276 12 5 1414 1663 30360722 30360448 3.720000e-68 268.0
53 TraesCS3D01G142800 chr4B 84.588 279 15 5 1413 1663 601969880 601970158 3.740000e-63 252.0
54 TraesCS3D01G142800 chr4D 85.348 273 17 13 1413 1663 315532456 315532727 6.220000e-66 261.0
55 TraesCS3D01G142800 chr4D 84.727 275 13 9 1414 1663 370054985 370054715 4.840000e-62 248.0
56 TraesCS3D01G142800 chr4D 84.420 276 14 3 1413 1663 370032407 370032136 6.260000e-61 244.0
57 TraesCS3D01G142800 chr4D 97.080 137 3 1 166 301 441124321 441124457 1.750000e-56 230.0
58 TraesCS3D01G142800 chr4D 95.804 143 5 1 161 302 467208593 467208735 1.750000e-56 230.0
59 TraesCS3D01G142800 chr7A 95.804 143 3 2 160 301 727261333 727261473 6.310000e-56 228.0
60 TraesCS3D01G142800 chr1A 95.105 143 4 2 160 301 516444298 516444158 2.930000e-54 222.0
61 TraesCS3D01G142800 chr1A 100.000 51 0 0 1 51 516445084 516445034 6.680000e-16 95.3
62 TraesCS3D01G142800 chr3B 90.909 77 6 1 530 606 164537321 164537396 3.990000e-18 102.0
63 TraesCS3D01G142800 chr4A 100.000 51 0 0 1 51 728575114 728575064 6.680000e-16 95.3
64 TraesCS3D01G142800 chr6B 96.429 56 2 0 1 56 576365789 576365734 2.400000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G142800 chr3D 104813616 104815885 2269 False 4193.000000 4193 100.000 1 2270 1 chr3D.!!$F2 2269
1 TraesCS3D01G142800 chr3D 104820725 104821334 609 False 889.000000 889 92.962 1660 2270 1 chr3D.!!$F3 610
2 TraesCS3D01G142800 chr3D 58049128 58049739 611 False 880.000000 880 92.647 1660 2270 1 chr3D.!!$F1 610
3 TraesCS3D01G142800 chr3D 118422327 118425131 2804 True 204.666667 335 89.166 530 1092 3 chr3D.!!$R2 562
4 TraesCS3D01G142800 chr7B 511297870 511299173 1303 True 677.500000 1256 91.836 302 1418 2 chr7B.!!$R1 1116
5 TraesCS3D01G142800 chr7D 519402288 519403165 877 False 1003.000000 1003 87.753 1409 2270 1 chr7D.!!$F1 861
6 TraesCS3D01G142800 chr7D 484411228 484412267 1039 True 444.666667 867 92.778 302 1281 3 chr7D.!!$R4 979
7 TraesCS3D01G142800 chr2D 586127856 586128466 610 True 902.000000 902 93.290 1660 2270 1 chr2D.!!$R3 610
8 TraesCS3D01G142800 chr2D 126964860 126965470 610 False 891.000000 891 92.962 1660 2270 1 chr2D.!!$F2 610
9 TraesCS3D01G142800 chr2D 552731485 552732095 610 True 891.000000 891 92.962 1660 2270 1 chr2D.!!$R1 610
10 TraesCS3D01G142800 chr1B 659526019 659526629 610 True 902.000000 902 93.290 1660 2270 1 chr1B.!!$R1 610
11 TraesCS3D01G142800 chr5D 246018977 246019587 610 False 885.000000 885 92.799 1660 2270 1 chr5D.!!$F1 610
12 TraesCS3D01G142800 chr1D 421873724 421874334 610 False 885.000000 885 92.799 1660 2270 1 chr1D.!!$F4 610
13 TraesCS3D01G142800 chr5A 619752511 619753355 844 True 830.000000 830 84.842 1414 2270 1 chr5A.!!$R1 856
14 TraesCS3D01G142800 chr3A 550632586 550633786 1200 True 538.000000 671 92.741 302 1418 3 chr3A.!!$R1 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.040514 TGCGCTTGGTCGTGATTTTG 60.041 50.0 9.73 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1285 3808 0.321564 AAAGCCGTACTCTGCATGCA 60.322 50.0 21.29 21.29 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.882927 TATAAGTTCGGCAGTCGCAT 57.117 45.000 0.00 0.00 41.24 4.73
20 21 2.024176 ATAAGTTCGGCAGTCGCATT 57.976 45.000 0.00 0.00 41.24 3.56
21 22 1.075542 TAAGTTCGGCAGTCGCATTG 58.924 50.000 0.00 0.00 41.24 2.82
22 23 1.577328 AAGTTCGGCAGTCGCATTGG 61.577 55.000 0.00 0.00 41.24 3.16
23 24 3.430862 TTCGGCAGTCGCATTGGC 61.431 61.111 0.00 0.00 41.24 4.52
24 25 4.695993 TCGGCAGTCGCATTGGCA 62.696 61.111 0.00 0.00 40.80 4.92
25 26 3.736100 CGGCAGTCGCATTGGCAA 61.736 61.111 0.68 0.68 40.80 4.52
26 27 2.126346 GGCAGTCGCATTGGCAAC 60.126 61.111 0.00 0.00 41.24 4.17
27 28 2.126346 GCAGTCGCATTGGCAACC 60.126 61.111 0.00 0.00 41.24 3.77
28 29 2.176546 CAGTCGCATTGGCAACCG 59.823 61.111 0.00 9.00 41.24 4.44
29 30 2.031919 AGTCGCATTGGCAACCGA 59.968 55.556 17.46 17.46 41.24 4.69
30 31 2.175811 GTCGCATTGGCAACCGAC 59.824 61.111 27.77 27.77 42.39 4.79
31 32 2.031919 TCGCATTGGCAACCGACT 59.968 55.556 17.46 0.00 41.24 4.18
32 33 1.599518 TCGCATTGGCAACCGACTT 60.600 52.632 17.46 0.00 41.24 3.01
33 34 1.442520 CGCATTGGCAACCGACTTG 60.443 57.895 14.68 4.32 41.24 3.16
34 35 1.659794 GCATTGGCAACCGACTTGT 59.340 52.632 0.00 0.00 40.72 3.16
35 36 0.878416 GCATTGGCAACCGACTTGTA 59.122 50.000 0.00 0.00 40.72 2.41
36 37 1.401018 GCATTGGCAACCGACTTGTAC 60.401 52.381 0.00 0.00 40.72 2.90
37 38 2.151202 CATTGGCAACCGACTTGTACT 58.849 47.619 0.00 0.00 31.73 2.73
38 39 1.873698 TTGGCAACCGACTTGTACTC 58.126 50.000 0.00 0.00 31.73 2.59
39 40 0.753867 TGGCAACCGACTTGTACTCA 59.246 50.000 0.00 0.00 31.73 3.41
40 41 1.270094 TGGCAACCGACTTGTACTCAG 60.270 52.381 0.00 0.00 31.73 3.35
41 42 0.790814 GCAACCGACTTGTACTCAGC 59.209 55.000 0.00 0.00 31.73 4.26
42 43 1.605712 GCAACCGACTTGTACTCAGCT 60.606 52.381 0.00 0.00 31.73 4.24
43 44 2.755650 CAACCGACTTGTACTCAGCTT 58.244 47.619 0.00 0.00 0.00 3.74
44 45 2.726832 ACCGACTTGTACTCAGCTTC 57.273 50.000 0.00 0.00 0.00 3.86
45 46 2.240279 ACCGACTTGTACTCAGCTTCT 58.760 47.619 0.00 0.00 0.00 2.85
46 47 2.029828 ACCGACTTGTACTCAGCTTCTG 60.030 50.000 0.00 0.00 0.00 3.02
47 48 2.029828 CCGACTTGTACTCAGCTTCTGT 60.030 50.000 0.00 0.00 32.61 3.41
48 49 2.983136 CGACTTGTACTCAGCTTCTGTG 59.017 50.000 0.00 0.00 32.61 3.66
49 50 2.734079 GACTTGTACTCAGCTTCTGTGC 59.266 50.000 0.00 0.00 32.61 4.57
50 51 2.366916 ACTTGTACTCAGCTTCTGTGCT 59.633 45.455 0.00 0.00 45.18 4.40
51 52 3.574396 ACTTGTACTCAGCTTCTGTGCTA 59.426 43.478 0.00 0.00 41.98 3.49
52 53 4.039245 ACTTGTACTCAGCTTCTGTGCTAA 59.961 41.667 0.00 0.00 41.98 3.09
53 54 4.808414 TGTACTCAGCTTCTGTGCTAAT 57.192 40.909 0.00 0.00 41.98 1.73
54 55 4.498241 TGTACTCAGCTTCTGTGCTAATG 58.502 43.478 0.00 0.00 41.98 1.90
55 56 2.354259 ACTCAGCTTCTGTGCTAATGC 58.646 47.619 0.00 0.00 41.98 3.56
56 57 2.027377 ACTCAGCTTCTGTGCTAATGCT 60.027 45.455 0.00 0.00 41.98 3.79
57 58 2.608546 CTCAGCTTCTGTGCTAATGCTC 59.391 50.000 0.00 0.00 41.98 4.26
58 59 2.235650 TCAGCTTCTGTGCTAATGCTCT 59.764 45.455 0.00 0.00 41.98 4.09
59 60 3.008330 CAGCTTCTGTGCTAATGCTCTT 58.992 45.455 0.00 0.00 41.98 2.85
60 61 3.008330 AGCTTCTGTGCTAATGCTCTTG 58.992 45.455 0.00 0.00 42.10 3.02
61 62 2.746362 GCTTCTGTGCTAATGCTCTTGT 59.254 45.455 0.00 0.00 40.48 3.16
62 63 3.425892 GCTTCTGTGCTAATGCTCTTGTG 60.426 47.826 0.00 0.00 40.48 3.33
63 64 3.683365 TCTGTGCTAATGCTCTTGTGA 57.317 42.857 0.00 0.00 40.48 3.58
64 65 3.329386 TCTGTGCTAATGCTCTTGTGAC 58.671 45.455 0.00 0.00 40.48 3.67
65 66 3.007290 TCTGTGCTAATGCTCTTGTGACT 59.993 43.478 0.00 0.00 40.48 3.41
66 67 3.069289 TGTGCTAATGCTCTTGTGACTG 58.931 45.455 0.00 0.00 40.48 3.51
67 68 2.079158 TGCTAATGCTCTTGTGACTGC 58.921 47.619 0.00 0.00 40.48 4.40
68 69 1.061711 GCTAATGCTCTTGTGACTGCG 59.938 52.381 0.00 0.00 36.03 5.18
69 70 1.061711 CTAATGCTCTTGTGACTGCGC 59.938 52.381 0.00 0.00 0.00 6.09
70 71 0.604780 AATGCTCTTGTGACTGCGCT 60.605 50.000 9.73 0.00 0.00 5.92
71 72 0.604780 ATGCTCTTGTGACTGCGCTT 60.605 50.000 9.73 0.00 0.00 4.68
72 73 1.206072 GCTCTTGTGACTGCGCTTG 59.794 57.895 9.73 3.92 0.00 4.01
73 74 1.864862 CTCTTGTGACTGCGCTTGG 59.135 57.895 9.73 1.02 0.00 3.61
74 75 0.882042 CTCTTGTGACTGCGCTTGGT 60.882 55.000 9.73 4.80 0.00 3.67
75 76 0.880278 TCTTGTGACTGCGCTTGGTC 60.880 55.000 9.73 14.62 0.00 4.02
76 77 2.162921 CTTGTGACTGCGCTTGGTCG 62.163 60.000 9.73 0.00 35.45 4.79
77 78 2.661866 GTGACTGCGCTTGGTCGT 60.662 61.111 9.73 0.00 35.45 4.34
78 79 2.661537 TGACTGCGCTTGGTCGTG 60.662 61.111 9.73 0.00 35.45 4.35
79 80 2.355837 GACTGCGCTTGGTCGTGA 60.356 61.111 9.73 0.00 0.00 4.35
80 81 1.738099 GACTGCGCTTGGTCGTGAT 60.738 57.895 9.73 0.00 0.00 3.06
81 82 1.291877 GACTGCGCTTGGTCGTGATT 61.292 55.000 9.73 0.00 0.00 2.57
82 83 0.884704 ACTGCGCTTGGTCGTGATTT 60.885 50.000 9.73 0.00 0.00 2.17
83 84 0.238289 CTGCGCTTGGTCGTGATTTT 59.762 50.000 9.73 0.00 0.00 1.82
84 85 0.040514 TGCGCTTGGTCGTGATTTTG 60.041 50.000 9.73 0.00 0.00 2.44
85 86 1.337110 GCGCTTGGTCGTGATTTTGC 61.337 55.000 0.00 0.00 0.00 3.68
86 87 0.040514 CGCTTGGTCGTGATTTTGCA 60.041 50.000 0.00 0.00 0.00 4.08
87 88 1.689959 GCTTGGTCGTGATTTTGCAG 58.310 50.000 0.00 0.00 0.00 4.41
88 89 1.001378 GCTTGGTCGTGATTTTGCAGT 60.001 47.619 0.00 0.00 0.00 4.40
89 90 2.543653 GCTTGGTCGTGATTTTGCAGTT 60.544 45.455 0.00 0.00 0.00 3.16
90 91 3.304391 GCTTGGTCGTGATTTTGCAGTTA 60.304 43.478 0.00 0.00 0.00 2.24
91 92 4.791411 GCTTGGTCGTGATTTTGCAGTTAA 60.791 41.667 0.00 0.00 0.00 2.01
92 93 4.481930 TGGTCGTGATTTTGCAGTTAAG 57.518 40.909 0.00 0.00 0.00 1.85
93 94 3.252215 TGGTCGTGATTTTGCAGTTAAGG 59.748 43.478 0.00 0.00 0.00 2.69
94 95 3.500680 GGTCGTGATTTTGCAGTTAAGGA 59.499 43.478 0.00 0.00 0.00 3.36
95 96 4.156008 GGTCGTGATTTTGCAGTTAAGGAT 59.844 41.667 0.00 0.00 0.00 3.24
96 97 5.335661 GGTCGTGATTTTGCAGTTAAGGATT 60.336 40.000 0.00 0.00 0.00 3.01
97 98 6.149633 GTCGTGATTTTGCAGTTAAGGATTT 58.850 36.000 0.00 0.00 0.00 2.17
98 99 6.088085 GTCGTGATTTTGCAGTTAAGGATTTG 59.912 38.462 0.00 0.00 0.00 2.32
99 100 5.345741 CGTGATTTTGCAGTTAAGGATTTGG 59.654 40.000 0.00 0.00 0.00 3.28
100 101 5.639082 GTGATTTTGCAGTTAAGGATTTGGG 59.361 40.000 0.00 0.00 0.00 4.12
101 102 5.541868 TGATTTTGCAGTTAAGGATTTGGGA 59.458 36.000 0.00 0.00 0.00 4.37
102 103 4.864704 TTTGCAGTTAAGGATTTGGGAC 57.135 40.909 0.00 0.00 0.00 4.46
103 104 3.517296 TGCAGTTAAGGATTTGGGACA 57.483 42.857 0.00 0.00 0.00 4.02
104 105 3.420893 TGCAGTTAAGGATTTGGGACAG 58.579 45.455 0.00 0.00 42.39 3.51
105 106 2.164422 GCAGTTAAGGATTTGGGACAGC 59.836 50.000 0.00 0.00 42.39 4.40
106 107 3.690460 CAGTTAAGGATTTGGGACAGCT 58.310 45.455 0.00 0.00 42.39 4.24
107 108 4.082125 CAGTTAAGGATTTGGGACAGCTT 58.918 43.478 0.00 0.00 42.39 3.74
108 109 4.156739 CAGTTAAGGATTTGGGACAGCTTC 59.843 45.833 0.00 0.00 42.39 3.86
109 110 2.978156 AAGGATTTGGGACAGCTTCA 57.022 45.000 0.00 0.00 42.39 3.02
110 111 3.463048 AAGGATTTGGGACAGCTTCAT 57.537 42.857 0.00 0.00 42.39 2.57
111 112 3.463048 AGGATTTGGGACAGCTTCATT 57.537 42.857 0.00 0.00 42.39 2.57
112 113 3.782992 AGGATTTGGGACAGCTTCATTT 58.217 40.909 0.00 0.00 42.39 2.32
113 114 3.766051 AGGATTTGGGACAGCTTCATTTC 59.234 43.478 0.00 0.00 42.39 2.17
114 115 3.766051 GGATTTGGGACAGCTTCATTTCT 59.234 43.478 0.00 0.00 42.39 2.52
115 116 4.221482 GGATTTGGGACAGCTTCATTTCTT 59.779 41.667 0.00 0.00 42.39 2.52
116 117 4.853924 TTTGGGACAGCTTCATTTCTTC 57.146 40.909 0.00 0.00 42.39 2.87
117 118 2.795329 TGGGACAGCTTCATTTCTTCC 58.205 47.619 0.00 0.00 0.00 3.46
118 119 2.376518 TGGGACAGCTTCATTTCTTCCT 59.623 45.455 0.00 0.00 0.00 3.36
119 120 2.751806 GGGACAGCTTCATTTCTTCCTG 59.248 50.000 0.00 0.00 0.00 3.86
120 121 2.751806 GGACAGCTTCATTTCTTCCTGG 59.248 50.000 0.00 0.00 0.00 4.45
121 122 2.751806 GACAGCTTCATTTCTTCCTGGG 59.248 50.000 0.00 0.00 0.00 4.45
122 123 2.108952 ACAGCTTCATTTCTTCCTGGGT 59.891 45.455 0.00 0.00 0.00 4.51
123 124 3.330701 ACAGCTTCATTTCTTCCTGGGTA 59.669 43.478 0.00 0.00 0.00 3.69
124 125 4.018050 ACAGCTTCATTTCTTCCTGGGTAT 60.018 41.667 0.00 0.00 0.00 2.73
125 126 4.952335 CAGCTTCATTTCTTCCTGGGTATT 59.048 41.667 0.00 0.00 0.00 1.89
126 127 4.952335 AGCTTCATTTCTTCCTGGGTATTG 59.048 41.667 0.00 0.00 0.00 1.90
127 128 4.949856 GCTTCATTTCTTCCTGGGTATTGA 59.050 41.667 0.00 0.00 0.00 2.57
128 129 5.067023 GCTTCATTTCTTCCTGGGTATTGAG 59.933 44.000 0.00 0.00 0.00 3.02
129 130 5.116084 TCATTTCTTCCTGGGTATTGAGG 57.884 43.478 0.00 0.00 0.00 3.86
130 131 4.540099 TCATTTCTTCCTGGGTATTGAGGT 59.460 41.667 0.00 0.00 0.00 3.85
131 132 5.015178 TCATTTCTTCCTGGGTATTGAGGTT 59.985 40.000 0.00 0.00 0.00 3.50
132 133 4.301072 TTCTTCCTGGGTATTGAGGTTG 57.699 45.455 0.00 0.00 0.00 3.77
133 134 2.026262 TCTTCCTGGGTATTGAGGTTGC 60.026 50.000 0.00 0.00 0.00 4.17
134 135 1.668826 TCCTGGGTATTGAGGTTGCT 58.331 50.000 0.00 0.00 0.00 3.91
135 136 1.559682 TCCTGGGTATTGAGGTTGCTC 59.440 52.381 0.00 0.00 0.00 4.26
136 137 1.281867 CCTGGGTATTGAGGTTGCTCA 59.718 52.381 0.00 0.00 0.00 4.26
137 138 2.092212 CCTGGGTATTGAGGTTGCTCAT 60.092 50.000 0.00 0.00 32.91 2.90
138 139 3.209410 CTGGGTATTGAGGTTGCTCATC 58.791 50.000 0.00 0.00 32.91 2.92
139 140 2.575735 TGGGTATTGAGGTTGCTCATCA 59.424 45.455 0.00 0.00 34.96 3.07
140 141 3.209410 GGGTATTGAGGTTGCTCATCAG 58.791 50.000 0.00 0.00 38.11 2.90
141 142 3.370953 GGGTATTGAGGTTGCTCATCAGT 60.371 47.826 0.00 0.00 38.11 3.41
142 143 3.873952 GGTATTGAGGTTGCTCATCAGTC 59.126 47.826 0.00 0.00 38.11 3.51
143 144 3.996921 ATTGAGGTTGCTCATCAGTCT 57.003 42.857 0.00 0.00 38.11 3.24
144 145 3.325293 TTGAGGTTGCTCATCAGTCTC 57.675 47.619 0.00 0.00 38.11 3.36
145 146 1.203287 TGAGGTTGCTCATCAGTCTCG 59.797 52.381 0.00 0.00 31.68 4.04
146 147 1.203523 GAGGTTGCTCATCAGTCTCGT 59.796 52.381 0.00 0.00 0.00 4.18
147 148 1.067283 AGGTTGCTCATCAGTCTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
148 149 1.354040 GTTGCTCATCAGTCTCGTGG 58.646 55.000 0.00 0.00 0.00 4.94
149 150 0.969149 TTGCTCATCAGTCTCGTGGT 59.031 50.000 0.00 0.00 0.00 4.16
150 151 1.834188 TGCTCATCAGTCTCGTGGTA 58.166 50.000 0.00 0.00 0.00 3.25
151 152 1.472878 TGCTCATCAGTCTCGTGGTAC 59.527 52.381 0.00 0.00 0.00 3.34
152 153 1.472878 GCTCATCAGTCTCGTGGTACA 59.527 52.381 0.00 0.00 0.00 2.90
153 154 2.094700 GCTCATCAGTCTCGTGGTACAA 60.095 50.000 0.00 0.00 44.16 2.41
154 155 3.763902 CTCATCAGTCTCGTGGTACAAG 58.236 50.000 0.00 0.00 44.16 3.16
155 156 3.154710 TCATCAGTCTCGTGGTACAAGT 58.845 45.455 0.00 0.00 44.16 3.16
156 157 3.190744 TCATCAGTCTCGTGGTACAAGTC 59.809 47.826 0.00 0.00 44.16 3.01
157 158 1.884579 TCAGTCTCGTGGTACAAGTCC 59.115 52.381 0.00 0.00 44.16 3.85
158 159 1.611977 CAGTCTCGTGGTACAAGTCCA 59.388 52.381 0.00 0.00 44.16 4.02
159 160 2.035449 CAGTCTCGTGGTACAAGTCCAA 59.965 50.000 0.00 0.00 44.16 3.53
160 161 2.897969 AGTCTCGTGGTACAAGTCCAAT 59.102 45.455 0.00 0.00 44.16 3.16
161 162 4.082408 CAGTCTCGTGGTACAAGTCCAATA 60.082 45.833 0.00 0.00 44.16 1.90
162 163 4.082354 AGTCTCGTGGTACAAGTCCAATAC 60.082 45.833 0.00 0.00 44.16 1.89
163 164 3.194116 TCTCGTGGTACAAGTCCAATACC 59.806 47.826 0.00 0.00 44.16 2.73
164 165 2.898612 TCGTGGTACAAGTCCAATACCA 59.101 45.455 0.00 0.00 44.81 3.25
167 168 4.919774 TGGTACAAGTCCAATACCATGT 57.080 40.909 0.00 0.00 42.70 3.21
169 170 6.375830 TGGTACAAGTCCAATACCATGTAA 57.624 37.500 0.00 0.00 42.70 2.41
170 171 6.780901 TGGTACAAGTCCAATACCATGTAAA 58.219 36.000 0.00 0.00 42.70 2.01
171 172 7.232188 TGGTACAAGTCCAATACCATGTAAAA 58.768 34.615 0.00 0.00 42.70 1.52
172 173 7.175293 TGGTACAAGTCCAATACCATGTAAAAC 59.825 37.037 0.00 0.00 42.70 2.43
173 174 6.249035 ACAAGTCCAATACCATGTAAAACG 57.751 37.500 0.00 0.00 29.45 3.60
174 175 5.766174 ACAAGTCCAATACCATGTAAAACGT 59.234 36.000 0.00 0.00 29.45 3.99
175 176 6.935771 ACAAGTCCAATACCATGTAAAACGTA 59.064 34.615 0.00 0.00 29.45 3.57
176 177 7.118680 ACAAGTCCAATACCATGTAAAACGTAG 59.881 37.037 0.00 0.00 29.45 3.51
177 178 6.110707 AGTCCAATACCATGTAAAACGTAGG 58.889 40.000 0.00 0.00 0.00 3.18
178 179 5.876460 GTCCAATACCATGTAAAACGTAGGT 59.124 40.000 0.00 0.00 0.00 3.08
179 180 6.372381 GTCCAATACCATGTAAAACGTAGGTT 59.628 38.462 0.00 0.00 38.22 3.50
189 190 3.301794 AAACGTAGGTTTTGGGGAACT 57.698 42.857 7.71 0.00 43.69 3.01
190 191 2.265589 ACGTAGGTTTTGGGGAACTG 57.734 50.000 0.00 0.00 0.00 3.16
191 192 1.202842 ACGTAGGTTTTGGGGAACTGG 60.203 52.381 0.00 0.00 0.00 4.00
192 193 1.254026 GTAGGTTTTGGGGAACTGGC 58.746 55.000 0.00 0.00 0.00 4.85
193 194 1.154430 TAGGTTTTGGGGAACTGGCT 58.846 50.000 0.00 0.00 0.00 4.75
194 195 0.178961 AGGTTTTGGGGAACTGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
195 196 0.469144 GGTTTTGGGGAACTGGCTCA 60.469 55.000 0.00 0.00 0.00 4.26
196 197 1.408969 GTTTTGGGGAACTGGCTCAA 58.591 50.000 0.00 0.00 0.00 3.02
197 198 1.068588 GTTTTGGGGAACTGGCTCAAC 59.931 52.381 0.00 0.00 0.00 3.18
198 199 0.469144 TTTGGGGAACTGGCTCAACC 60.469 55.000 0.00 0.00 39.84 3.77
199 200 2.035783 GGGGAACTGGCTCAACCC 59.964 66.667 0.00 0.00 37.83 4.11
200 201 2.539081 GGGGAACTGGCTCAACCCT 61.539 63.158 0.00 0.00 40.31 4.34
201 202 1.002011 GGGAACTGGCTCAACCCTC 60.002 63.158 0.00 0.00 37.83 4.30
202 203 1.761174 GGAACTGGCTCAACCCTCA 59.239 57.895 0.00 0.00 37.83 3.86
203 204 0.110486 GGAACTGGCTCAACCCTCAA 59.890 55.000 0.00 0.00 37.83 3.02
204 205 1.478654 GGAACTGGCTCAACCCTCAAA 60.479 52.381 0.00 0.00 37.83 2.69
205 206 1.882623 GAACTGGCTCAACCCTCAAAG 59.117 52.381 0.00 0.00 37.83 2.77
206 207 0.111253 ACTGGCTCAACCCTCAAAGG 59.889 55.000 0.00 0.00 37.83 3.11
215 216 3.835134 CCTCAAAGGGGTGGCCTA 58.165 61.111 3.32 0.00 0.00 3.93
216 217 2.321720 CCTCAAAGGGGTGGCCTAT 58.678 57.895 3.32 0.00 0.00 2.57
217 218 0.183731 CCTCAAAGGGGTGGCCTATC 59.816 60.000 3.32 0.00 0.00 2.08
218 219 0.918983 CTCAAAGGGGTGGCCTATCA 59.081 55.000 3.32 0.00 0.00 2.15
219 220 0.623723 TCAAAGGGGTGGCCTATCAC 59.376 55.000 3.32 0.00 36.95 3.06
220 221 0.331278 CAAAGGGGTGGCCTATCACA 59.669 55.000 3.32 0.00 39.27 3.58
221 222 1.063717 CAAAGGGGTGGCCTATCACAT 60.064 52.381 3.32 0.00 39.27 3.21
222 223 2.174639 CAAAGGGGTGGCCTATCACATA 59.825 50.000 3.32 0.00 39.27 2.29
223 224 2.440494 AGGGGTGGCCTATCACATAT 57.560 50.000 3.32 0.00 39.27 1.78
224 225 3.577968 AGGGGTGGCCTATCACATATA 57.422 47.619 3.32 0.00 39.27 0.86
225 226 4.094216 AGGGGTGGCCTATCACATATAT 57.906 45.455 3.32 0.00 39.27 0.86
226 227 5.235003 AGGGGTGGCCTATCACATATATA 57.765 43.478 3.32 0.00 39.27 0.86
227 228 5.804013 AGGGGTGGCCTATCACATATATAT 58.196 41.667 3.32 0.00 39.27 0.86
228 229 6.945371 AGGGGTGGCCTATCACATATATATA 58.055 40.000 3.32 0.00 39.27 0.86
229 230 7.557283 AGGGGTGGCCTATCACATATATATAT 58.443 38.462 3.32 0.00 39.27 0.86
230 231 8.697529 AGGGGTGGCCTATCACATATATATATA 58.302 37.037 3.32 4.92 39.27 0.86
231 232 9.333961 GGGGTGGCCTATCACATATATATATAA 57.666 37.037 3.32 0.00 39.27 0.98
253 254 6.903883 AATGATGACGTACAAGTCCAATAC 57.096 37.500 0.00 0.00 40.26 1.89
254 255 4.751060 TGATGACGTACAAGTCCAATACC 58.249 43.478 0.00 0.00 40.26 2.73
255 256 4.221041 TGATGACGTACAAGTCCAATACCA 59.779 41.667 0.00 0.00 40.26 3.25
256 257 4.603989 TGACGTACAAGTCCAATACCAA 57.396 40.909 0.00 0.00 40.26 3.67
257 258 5.155278 TGACGTACAAGTCCAATACCAAT 57.845 39.130 0.00 0.00 40.26 3.16
258 259 6.283544 TGACGTACAAGTCCAATACCAATA 57.716 37.500 0.00 0.00 40.26 1.90
259 260 6.101332 TGACGTACAAGTCCAATACCAATAC 58.899 40.000 0.00 0.00 40.26 1.89
260 261 5.104374 ACGTACAAGTCCAATACCAATACG 58.896 41.667 0.00 0.00 37.92 3.06
261 262 4.505191 CGTACAAGTCCAATACCAATACGG 59.495 45.833 0.00 0.00 42.50 4.02
262 263 9.909177 GACGTACAAGTCCAATACCAATACGGT 62.909 44.444 0.00 0.00 42.35 4.83
275 276 5.728351 CCAATACGGTATGGTTTACACAG 57.272 43.478 0.58 0.00 31.84 3.66
276 277 5.180271 CCAATACGGTATGGTTTACACAGT 58.820 41.667 0.58 0.00 31.84 3.55
277 278 6.339730 CCAATACGGTATGGTTTACACAGTA 58.660 40.000 0.58 0.00 31.84 2.74
278 279 6.477688 CCAATACGGTATGGTTTACACAGTAG 59.522 42.308 0.58 0.00 31.84 2.57
279 280 4.460948 ACGGTATGGTTTACACAGTAGG 57.539 45.455 0.00 0.00 0.00 3.18
280 281 3.196254 ACGGTATGGTTTACACAGTAGGG 59.804 47.826 0.00 0.00 0.00 3.53
281 282 3.538591 GGTATGGTTTACACAGTAGGGC 58.461 50.000 0.00 0.00 0.00 5.19
282 283 3.199289 GGTATGGTTTACACAGTAGGGCT 59.801 47.826 0.00 0.00 0.00 5.19
283 284 4.406649 GGTATGGTTTACACAGTAGGGCTA 59.593 45.833 0.00 0.00 0.00 3.93
284 285 3.967332 TGGTTTACACAGTAGGGCTAC 57.033 47.619 0.00 0.00 36.35 3.58
285 286 3.241156 TGGTTTACACAGTAGGGCTACA 58.759 45.455 0.00 0.00 38.48 2.74
286 287 3.647113 TGGTTTACACAGTAGGGCTACAA 59.353 43.478 0.00 0.00 38.48 2.41
287 288 4.287585 TGGTTTACACAGTAGGGCTACAAT 59.712 41.667 0.00 0.00 38.48 2.71
288 289 5.484644 TGGTTTACACAGTAGGGCTACAATA 59.515 40.000 0.00 0.00 38.48 1.90
289 290 6.157297 TGGTTTACACAGTAGGGCTACAATAT 59.843 38.462 0.00 0.00 38.48 1.28
290 291 6.482308 GGTTTACACAGTAGGGCTACAATATG 59.518 42.308 0.00 0.00 38.48 1.78
291 292 7.270047 GTTTACACAGTAGGGCTACAATATGA 58.730 38.462 0.00 0.00 38.48 2.15
292 293 5.950544 ACACAGTAGGGCTACAATATGAA 57.049 39.130 0.00 0.00 38.48 2.57
293 294 5.918608 ACACAGTAGGGCTACAATATGAAG 58.081 41.667 0.00 0.00 38.48 3.02
294 295 5.425539 ACACAGTAGGGCTACAATATGAAGT 59.574 40.000 0.00 0.00 38.48 3.01
295 296 5.986135 CACAGTAGGGCTACAATATGAAGTC 59.014 44.000 0.00 0.00 38.48 3.01
296 297 5.900123 ACAGTAGGGCTACAATATGAAGTCT 59.100 40.000 0.00 0.00 38.48 3.24
297 298 7.014326 CACAGTAGGGCTACAATATGAAGTCTA 59.986 40.741 0.00 0.00 38.48 2.59
298 299 7.563924 ACAGTAGGGCTACAATATGAAGTCTAA 59.436 37.037 0.00 0.00 38.48 2.10
299 300 7.868415 CAGTAGGGCTACAATATGAAGTCTAAC 59.132 40.741 0.00 0.00 38.48 2.34
300 301 6.808321 AGGGCTACAATATGAAGTCTAACA 57.192 37.500 0.00 0.00 0.00 2.41
474 692 3.011119 CGGTGGGAATTCGATGGTTTTA 58.989 45.455 0.00 0.00 0.00 1.52
475 693 3.064820 CGGTGGGAATTCGATGGTTTTAG 59.935 47.826 0.00 0.00 0.00 1.85
476 694 4.014406 GGTGGGAATTCGATGGTTTTAGT 58.986 43.478 0.00 0.00 0.00 2.24
477 695 4.095932 GGTGGGAATTCGATGGTTTTAGTC 59.904 45.833 0.00 0.00 0.00 2.59
478 696 4.095932 GTGGGAATTCGATGGTTTTAGTCC 59.904 45.833 0.00 0.00 0.00 3.85
479 697 4.018779 TGGGAATTCGATGGTTTTAGTCCT 60.019 41.667 0.00 0.00 0.00 3.85
480 698 4.948004 GGGAATTCGATGGTTTTAGTCCTT 59.052 41.667 0.00 0.00 0.00 3.36
481 699 6.117488 GGGAATTCGATGGTTTTAGTCCTTA 58.883 40.000 0.00 0.00 0.00 2.69
482 700 6.771267 GGGAATTCGATGGTTTTAGTCCTTAT 59.229 38.462 0.00 0.00 0.00 1.73
483 701 7.041303 GGGAATTCGATGGTTTTAGTCCTTATC 60.041 40.741 0.00 0.00 0.00 1.75
484 702 7.041303 GGAATTCGATGGTTTTAGTCCTTATCC 60.041 40.741 0.00 0.00 0.00 2.59
485 703 5.943349 TCGATGGTTTTAGTCCTTATCCA 57.057 39.130 0.00 0.00 0.00 3.41
486 704 6.494666 TCGATGGTTTTAGTCCTTATCCAT 57.505 37.500 0.00 0.00 36.99 3.41
507 725 5.533903 CCATCTAGGCTGTTTATGCATTTCT 59.466 40.000 3.54 0.00 0.00 2.52
526 744 2.629137 TCTAGTTGCGTCTGTTTGGGTA 59.371 45.455 0.00 0.00 0.00 3.69
613 854 9.508642 AGCTTATAATCTGGTTAGAAATAAGGC 57.491 33.333 16.30 11.85 39.87 4.35
654 895 5.623169 TCATGCCAACTATCATCAGCAATA 58.377 37.500 0.00 0.00 33.35 1.90
655 896 6.063404 TCATGCCAACTATCATCAGCAATAA 58.937 36.000 0.00 0.00 33.35 1.40
660 901 6.486657 GCCAACTATCATCAGCAATAAGGTAA 59.513 38.462 0.00 0.00 0.00 2.85
661 902 7.308229 GCCAACTATCATCAGCAATAAGGTAAG 60.308 40.741 0.00 0.00 0.00 2.34
662 903 7.173907 CCAACTATCATCAGCAATAAGGTAAGG 59.826 40.741 0.00 0.00 0.00 2.69
663 904 7.380423 ACTATCATCAGCAATAAGGTAAGGT 57.620 36.000 0.00 0.00 0.00 3.50
664 905 7.445945 ACTATCATCAGCAATAAGGTAAGGTC 58.554 38.462 0.00 0.00 0.00 3.85
666 907 5.674525 TCATCAGCAATAAGGTAAGGTCAG 58.325 41.667 0.00 0.00 0.00 3.51
667 908 5.189736 TCATCAGCAATAAGGTAAGGTCAGT 59.810 40.000 0.00 0.00 0.00 3.41
668 909 5.499004 TCAGCAATAAGGTAAGGTCAGTT 57.501 39.130 0.00 0.00 0.00 3.16
669 910 6.614694 TCAGCAATAAGGTAAGGTCAGTTA 57.385 37.500 0.00 0.00 0.00 2.24
670 911 6.640518 TCAGCAATAAGGTAAGGTCAGTTAG 58.359 40.000 0.00 0.00 0.00 2.34
703 988 2.572191 TGACGTTCGTCTTGTTCACT 57.428 45.000 22.49 0.00 36.23 3.41
721 1006 5.296151 TCACTGTCTCCATTCTGTTCTTT 57.704 39.130 0.00 0.00 0.00 2.52
791 1076 0.398696 AACGCAACATGTGGGGTCTA 59.601 50.000 22.04 0.00 44.36 2.59
884 3362 3.145551 GCGAGGTTCCGGGAGCTA 61.146 66.667 16.19 0.00 0.00 3.32
966 3487 1.671979 ACATCATGCATTCCCTGACG 58.328 50.000 0.00 0.00 0.00 4.35
1080 3603 2.029666 GCCTGCGCGATCTACCAT 59.970 61.111 12.10 0.00 0.00 3.55
1149 3672 0.947180 GTGTCGAAAGGTGCGGCTTA 60.947 55.000 0.00 0.00 33.92 3.09
1150 3673 0.036765 TGTCGAAAGGTGCGGCTTAT 60.037 50.000 0.00 0.00 33.92 1.73
1302 3827 0.812811 CATGCATGCAGAGTACGGCT 60.813 55.000 26.69 2.26 38.02 5.52
1303 3828 0.107508 ATGCATGCAGAGTACGGCTT 60.108 50.000 26.69 1.43 38.02 4.35
1304 3829 0.321564 TGCATGCAGAGTACGGCTTT 60.322 50.000 18.46 0.00 38.02 3.51
1305 3830 1.066502 TGCATGCAGAGTACGGCTTTA 60.067 47.619 18.46 0.00 38.02 1.85
1306 3831 1.594862 GCATGCAGAGTACGGCTTTAG 59.405 52.381 14.21 0.00 38.02 1.85
1307 3832 2.205074 CATGCAGAGTACGGCTTTAGG 58.795 52.381 0.00 0.00 38.02 2.69
1309 3834 1.067142 TGCAGAGTACGGCTTTAGGTG 60.067 52.381 8.33 0.00 38.02 4.00
1392 3941 2.943033 ACAGACCTGTGTACAAGTTTGC 59.057 45.455 0.00 0.00 43.11 3.68
1396 3945 5.238432 CAGACCTGTGTACAAGTTTGCATTA 59.762 40.000 0.00 0.00 0.00 1.90
1587 4166 1.136305 GGAATAGGAGCTGTACACGCA 59.864 52.381 16.27 0.61 0.00 5.24
1595 4174 1.372997 CTGTACACGCACGCTCCTT 60.373 57.895 0.00 0.00 0.00 3.36
1598 4177 0.666577 GTACACGCACGCTCCTTCTT 60.667 55.000 0.00 0.00 0.00 2.52
1600 4179 1.373497 CACGCACGCTCCTTCTTCT 60.373 57.895 0.00 0.00 0.00 2.85
1609 4188 3.775654 CCTTCTTCTCCGCCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
1610 4189 2.510238 CTTCTTCTCCGCCGCCTG 60.510 66.667 0.00 0.00 0.00 4.85
1699 4279 1.452953 AAGCGTCACTGTCCGAGACA 61.453 55.000 6.57 6.57 40.50 3.41
1906 4487 3.669344 CCGCGTGCATGGTTGGTT 61.669 61.111 8.27 0.00 0.00 3.67
1935 4516 0.919710 GGTGCCTCTGGAACCCTATT 59.080 55.000 2.24 0.00 0.00 1.73
1946 4527 4.030913 TGGAACCCTATTGTTCGAGATCT 58.969 43.478 0.00 0.00 44.43 2.75
1972 4553 2.419021 CGGGAGAACGGCAATAAGGTTA 60.419 50.000 0.00 0.00 0.00 2.85
2092 4674 0.827507 GCCACCAAGAAGAAGGCCAA 60.828 55.000 5.01 0.00 39.42 4.52
2197 4780 3.762407 ACATGTGCTGGCCGTATATAA 57.238 42.857 0.00 0.00 0.00 0.98
2254 4837 3.077359 GTGCTCACATGCTTAGGTTTCT 58.923 45.455 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.863740 CAATGCGACTGCCGAACTTATA 59.136 45.455 0.00 0.00 41.78 0.98
1 2 1.665679 CAATGCGACTGCCGAACTTAT 59.334 47.619 0.00 0.00 41.78 1.73
2 3 1.075542 CAATGCGACTGCCGAACTTA 58.924 50.000 0.00 0.00 41.78 2.24
3 4 1.577328 CCAATGCGACTGCCGAACTT 61.577 55.000 0.00 0.00 41.78 2.66
4 5 2.034879 CCAATGCGACTGCCGAACT 61.035 57.895 0.00 0.00 41.78 3.01
5 6 2.480555 CCAATGCGACTGCCGAAC 59.519 61.111 0.00 0.00 41.78 3.95
6 7 3.430862 GCCAATGCGACTGCCGAA 61.431 61.111 0.00 0.00 41.78 4.30
7 8 4.695993 TGCCAATGCGACTGCCGA 62.696 61.111 0.00 0.00 41.78 5.54
8 9 3.736100 TTGCCAATGCGACTGCCG 61.736 61.111 0.00 0.00 41.78 5.69
9 10 2.126346 GTTGCCAATGCGACTGCC 60.126 61.111 0.00 0.00 46.60 4.85
14 15 1.599518 AAGTCGGTTGCCAATGCGA 60.600 52.632 0.00 0.00 41.78 5.10
15 16 1.442520 CAAGTCGGTTGCCAATGCG 60.443 57.895 0.00 0.00 41.78 4.73
16 17 0.878416 TACAAGTCGGTTGCCAATGC 59.122 50.000 0.00 0.00 40.15 3.56
17 18 2.151202 AGTACAAGTCGGTTGCCAATG 58.849 47.619 0.00 0.00 40.15 2.82
18 19 2.224426 TGAGTACAAGTCGGTTGCCAAT 60.224 45.455 0.00 0.00 40.15 3.16
19 20 1.139256 TGAGTACAAGTCGGTTGCCAA 59.861 47.619 0.00 0.00 40.15 4.52
20 21 0.753867 TGAGTACAAGTCGGTTGCCA 59.246 50.000 0.00 0.00 40.15 4.92
21 22 1.429463 CTGAGTACAAGTCGGTTGCC 58.571 55.000 0.00 0.00 40.15 4.52
22 23 0.790814 GCTGAGTACAAGTCGGTTGC 59.209 55.000 0.00 0.00 40.15 4.17
23 24 2.440539 AGCTGAGTACAAGTCGGTTG 57.559 50.000 0.00 0.00 42.48 3.77
24 25 2.628657 AGAAGCTGAGTACAAGTCGGTT 59.371 45.455 0.00 0.00 0.00 4.44
25 26 2.029828 CAGAAGCTGAGTACAAGTCGGT 60.030 50.000 0.00 0.00 32.44 4.69
26 27 2.029828 ACAGAAGCTGAGTACAAGTCGG 60.030 50.000 0.82 0.00 35.18 4.79
27 28 2.983136 CACAGAAGCTGAGTACAAGTCG 59.017 50.000 0.82 0.00 35.18 4.18
28 29 2.734079 GCACAGAAGCTGAGTACAAGTC 59.266 50.000 0.82 0.00 35.18 3.01
29 30 2.366916 AGCACAGAAGCTGAGTACAAGT 59.633 45.455 0.82 0.00 44.66 3.16
30 31 3.037431 AGCACAGAAGCTGAGTACAAG 57.963 47.619 0.82 0.00 44.66 3.16
31 32 4.600692 TTAGCACAGAAGCTGAGTACAA 57.399 40.909 0.82 0.00 46.11 2.41
32 33 4.498241 CATTAGCACAGAAGCTGAGTACA 58.502 43.478 0.82 0.00 46.11 2.90
33 34 3.308323 GCATTAGCACAGAAGCTGAGTAC 59.692 47.826 0.82 0.00 46.11 2.73
34 35 3.196469 AGCATTAGCACAGAAGCTGAGTA 59.804 43.478 0.82 0.00 46.11 2.59
35 36 2.027377 AGCATTAGCACAGAAGCTGAGT 60.027 45.455 0.82 0.00 46.11 3.41
36 37 2.608546 GAGCATTAGCACAGAAGCTGAG 59.391 50.000 0.82 0.00 46.11 3.35
37 38 2.235650 AGAGCATTAGCACAGAAGCTGA 59.764 45.455 0.82 0.00 46.11 4.26
38 39 2.630158 AGAGCATTAGCACAGAAGCTG 58.370 47.619 0.00 0.00 46.11 4.24
40 41 2.746362 ACAAGAGCATTAGCACAGAAGC 59.254 45.455 0.00 0.00 45.49 3.86
41 42 3.999001 TCACAAGAGCATTAGCACAGAAG 59.001 43.478 0.00 0.00 45.49 2.85
42 43 3.748048 GTCACAAGAGCATTAGCACAGAA 59.252 43.478 0.00 0.00 45.49 3.02
43 44 3.007290 AGTCACAAGAGCATTAGCACAGA 59.993 43.478 0.00 0.00 45.49 3.41
44 45 3.124806 CAGTCACAAGAGCATTAGCACAG 59.875 47.826 0.00 0.00 45.49 3.66
45 46 3.069289 CAGTCACAAGAGCATTAGCACA 58.931 45.455 0.00 0.00 45.49 4.57
46 47 2.159599 GCAGTCACAAGAGCATTAGCAC 60.160 50.000 0.00 0.00 45.49 4.40
47 48 2.079158 GCAGTCACAAGAGCATTAGCA 58.921 47.619 0.00 0.00 45.49 3.49
48 49 1.061711 CGCAGTCACAAGAGCATTAGC 59.938 52.381 0.00 0.00 42.56 3.09
49 50 1.061711 GCGCAGTCACAAGAGCATTAG 59.938 52.381 0.30 0.00 0.00 1.73
50 51 1.078709 GCGCAGTCACAAGAGCATTA 58.921 50.000 0.30 0.00 0.00 1.90
51 52 0.604780 AGCGCAGTCACAAGAGCATT 60.605 50.000 11.47 0.00 32.74 3.56
52 53 0.604780 AAGCGCAGTCACAAGAGCAT 60.605 50.000 11.47 0.00 32.74 3.79
53 54 1.227645 AAGCGCAGTCACAAGAGCA 60.228 52.632 11.47 0.00 32.74 4.26
54 55 1.206072 CAAGCGCAGTCACAAGAGC 59.794 57.895 11.47 0.00 0.00 4.09
55 56 0.882042 ACCAAGCGCAGTCACAAGAG 60.882 55.000 11.47 0.00 0.00 2.85
56 57 0.880278 GACCAAGCGCAGTCACAAGA 60.880 55.000 11.47 0.00 33.08 3.02
57 58 1.571460 GACCAAGCGCAGTCACAAG 59.429 57.895 11.47 0.00 33.08 3.16
58 59 2.243957 CGACCAAGCGCAGTCACAA 61.244 57.895 20.50 0.00 33.08 3.33
59 60 2.661537 CGACCAAGCGCAGTCACA 60.662 61.111 20.50 0.00 33.08 3.58
60 61 2.661866 ACGACCAAGCGCAGTCAC 60.662 61.111 20.50 5.24 33.08 3.67
61 62 2.434658 ATCACGACCAAGCGCAGTCA 62.435 55.000 20.50 6.24 33.08 3.41
62 63 1.291877 AATCACGACCAAGCGCAGTC 61.292 55.000 11.47 12.70 33.86 3.51
63 64 0.884704 AAATCACGACCAAGCGCAGT 60.885 50.000 11.47 3.22 33.86 4.40
64 65 0.238289 AAAATCACGACCAAGCGCAG 59.762 50.000 11.47 0.38 33.86 5.18
65 66 0.040514 CAAAATCACGACCAAGCGCA 60.041 50.000 11.47 0.00 33.86 6.09
66 67 1.337110 GCAAAATCACGACCAAGCGC 61.337 55.000 0.00 0.00 33.86 5.92
67 68 0.040514 TGCAAAATCACGACCAAGCG 60.041 50.000 0.00 0.00 37.29 4.68
68 69 1.001378 ACTGCAAAATCACGACCAAGC 60.001 47.619 0.00 0.00 0.00 4.01
69 70 3.354089 AACTGCAAAATCACGACCAAG 57.646 42.857 0.00 0.00 0.00 3.61
70 71 4.261405 CCTTAACTGCAAAATCACGACCAA 60.261 41.667 0.00 0.00 0.00 3.67
71 72 3.252215 CCTTAACTGCAAAATCACGACCA 59.748 43.478 0.00 0.00 0.00 4.02
72 73 3.500680 TCCTTAACTGCAAAATCACGACC 59.499 43.478 0.00 0.00 0.00 4.79
73 74 4.742438 TCCTTAACTGCAAAATCACGAC 57.258 40.909 0.00 0.00 0.00 4.34
74 75 5.957842 AATCCTTAACTGCAAAATCACGA 57.042 34.783 0.00 0.00 0.00 4.35
75 76 5.345741 CCAAATCCTTAACTGCAAAATCACG 59.654 40.000 0.00 0.00 0.00 4.35
76 77 5.639082 CCCAAATCCTTAACTGCAAAATCAC 59.361 40.000 0.00 0.00 0.00 3.06
77 78 5.541868 TCCCAAATCCTTAACTGCAAAATCA 59.458 36.000 0.00 0.00 0.00 2.57
78 79 5.869344 GTCCCAAATCCTTAACTGCAAAATC 59.131 40.000 0.00 0.00 0.00 2.17
79 80 5.306678 TGTCCCAAATCCTTAACTGCAAAAT 59.693 36.000 0.00 0.00 0.00 1.82
80 81 4.651503 TGTCCCAAATCCTTAACTGCAAAA 59.348 37.500 0.00 0.00 0.00 2.44
81 82 4.219115 TGTCCCAAATCCTTAACTGCAAA 58.781 39.130 0.00 0.00 0.00 3.68
82 83 3.826157 CTGTCCCAAATCCTTAACTGCAA 59.174 43.478 0.00 0.00 0.00 4.08
83 84 3.420893 CTGTCCCAAATCCTTAACTGCA 58.579 45.455 0.00 0.00 0.00 4.41
84 85 2.164422 GCTGTCCCAAATCCTTAACTGC 59.836 50.000 0.00 0.00 0.00 4.40
85 86 3.690460 AGCTGTCCCAAATCCTTAACTG 58.310 45.455 0.00 0.00 0.00 3.16
86 87 4.202567 TGAAGCTGTCCCAAATCCTTAACT 60.203 41.667 0.00 0.00 0.00 2.24
87 88 4.079253 TGAAGCTGTCCCAAATCCTTAAC 58.921 43.478 0.00 0.00 0.00 2.01
88 89 4.380843 TGAAGCTGTCCCAAATCCTTAA 57.619 40.909 0.00 0.00 0.00 1.85
89 90 4.591321 ATGAAGCTGTCCCAAATCCTTA 57.409 40.909 0.00 0.00 0.00 2.69
90 91 2.978156 TGAAGCTGTCCCAAATCCTT 57.022 45.000 0.00 0.00 0.00 3.36
91 92 3.463048 AATGAAGCTGTCCCAAATCCT 57.537 42.857 0.00 0.00 0.00 3.24
92 93 3.766051 AGAAATGAAGCTGTCCCAAATCC 59.234 43.478 0.00 0.00 0.00 3.01
93 94 5.397142 AAGAAATGAAGCTGTCCCAAATC 57.603 39.130 0.00 0.00 0.00 2.17
94 95 4.221482 GGAAGAAATGAAGCTGTCCCAAAT 59.779 41.667 0.00 0.00 0.00 2.32
95 96 3.573967 GGAAGAAATGAAGCTGTCCCAAA 59.426 43.478 0.00 0.00 0.00 3.28
96 97 3.157087 GGAAGAAATGAAGCTGTCCCAA 58.843 45.455 0.00 0.00 0.00 4.12
97 98 2.376518 AGGAAGAAATGAAGCTGTCCCA 59.623 45.455 0.00 0.00 0.00 4.37
98 99 2.751806 CAGGAAGAAATGAAGCTGTCCC 59.248 50.000 0.00 0.00 0.00 4.46
99 100 2.751806 CCAGGAAGAAATGAAGCTGTCC 59.248 50.000 0.00 0.00 0.00 4.02
100 101 2.751806 CCCAGGAAGAAATGAAGCTGTC 59.248 50.000 0.00 0.00 0.00 3.51
101 102 2.108952 ACCCAGGAAGAAATGAAGCTGT 59.891 45.455 0.00 0.00 0.00 4.40
102 103 2.800250 ACCCAGGAAGAAATGAAGCTG 58.200 47.619 0.00 0.00 0.00 4.24
103 104 4.870021 ATACCCAGGAAGAAATGAAGCT 57.130 40.909 0.00 0.00 0.00 3.74
104 105 4.949856 TCAATACCCAGGAAGAAATGAAGC 59.050 41.667 0.00 0.00 0.00 3.86
105 106 5.591877 CCTCAATACCCAGGAAGAAATGAAG 59.408 44.000 0.00 0.00 30.32 3.02
106 107 5.015178 ACCTCAATACCCAGGAAGAAATGAA 59.985 40.000 0.00 0.00 33.52 2.57
107 108 4.540099 ACCTCAATACCCAGGAAGAAATGA 59.460 41.667 0.00 0.00 33.52 2.57
108 109 4.860022 ACCTCAATACCCAGGAAGAAATG 58.140 43.478 0.00 0.00 33.52 2.32
109 110 5.264395 CAACCTCAATACCCAGGAAGAAAT 58.736 41.667 0.00 0.00 33.52 2.17
110 111 4.662278 CAACCTCAATACCCAGGAAGAAA 58.338 43.478 0.00 0.00 33.52 2.52
111 112 3.561313 GCAACCTCAATACCCAGGAAGAA 60.561 47.826 0.00 0.00 33.52 2.52
112 113 2.026262 GCAACCTCAATACCCAGGAAGA 60.026 50.000 0.00 0.00 33.52 2.87
113 114 2.025887 AGCAACCTCAATACCCAGGAAG 60.026 50.000 0.00 0.00 33.52 3.46
114 115 1.992557 AGCAACCTCAATACCCAGGAA 59.007 47.619 0.00 0.00 33.52 3.36
115 116 1.559682 GAGCAACCTCAATACCCAGGA 59.440 52.381 0.00 0.00 38.03 3.86
116 117 1.281867 TGAGCAACCTCAATACCCAGG 59.718 52.381 0.00 0.00 44.79 4.45
117 118 2.787473 TGAGCAACCTCAATACCCAG 57.213 50.000 0.00 0.00 44.79 4.45
126 127 1.203523 ACGAGACTGATGAGCAACCTC 59.796 52.381 0.00 0.00 38.62 3.85
127 128 1.067283 CACGAGACTGATGAGCAACCT 60.067 52.381 0.00 0.00 0.00 3.50
128 129 1.354040 CACGAGACTGATGAGCAACC 58.646 55.000 0.00 0.00 0.00 3.77
129 130 1.337260 ACCACGAGACTGATGAGCAAC 60.337 52.381 0.00 0.00 0.00 4.17
130 131 0.969149 ACCACGAGACTGATGAGCAA 59.031 50.000 0.00 0.00 0.00 3.91
131 132 1.472878 GTACCACGAGACTGATGAGCA 59.527 52.381 0.00 0.00 0.00 4.26
132 133 1.472878 TGTACCACGAGACTGATGAGC 59.527 52.381 0.00 0.00 0.00 4.26
133 134 3.191581 ACTTGTACCACGAGACTGATGAG 59.808 47.826 0.54 0.00 33.76 2.90
134 135 3.154710 ACTTGTACCACGAGACTGATGA 58.845 45.455 0.54 0.00 33.76 2.92
135 136 3.502920 GACTTGTACCACGAGACTGATG 58.497 50.000 0.54 0.00 33.76 3.07
136 137 2.492484 GGACTTGTACCACGAGACTGAT 59.508 50.000 0.54 0.00 33.76 2.90
137 138 1.884579 GGACTTGTACCACGAGACTGA 59.115 52.381 0.54 0.00 33.76 3.41
138 139 1.611977 TGGACTTGTACCACGAGACTG 59.388 52.381 0.54 0.00 33.76 3.51
139 140 1.991121 TGGACTTGTACCACGAGACT 58.009 50.000 0.54 0.00 33.76 3.24
140 141 2.806608 TTGGACTTGTACCACGAGAC 57.193 50.000 0.54 0.00 37.13 3.36
141 142 3.194116 GGTATTGGACTTGTACCACGAGA 59.806 47.826 0.54 0.00 38.18 4.04
142 143 3.056393 TGGTATTGGACTTGTACCACGAG 60.056 47.826 0.00 0.00 42.06 4.18
143 144 2.898612 TGGTATTGGACTTGTACCACGA 59.101 45.455 0.00 0.00 42.06 4.35
144 145 3.322211 TGGTATTGGACTTGTACCACG 57.678 47.619 0.00 0.00 42.06 4.94
147 148 7.532571 GTTTTACATGGTATTGGACTTGTACC 58.467 38.462 0.00 0.00 38.65 3.34
148 149 7.095102 ACGTTTTACATGGTATTGGACTTGTAC 60.095 37.037 0.00 0.00 31.00 2.90
149 150 6.935771 ACGTTTTACATGGTATTGGACTTGTA 59.064 34.615 0.00 0.00 0.00 2.41
150 151 5.766174 ACGTTTTACATGGTATTGGACTTGT 59.234 36.000 0.00 0.00 0.00 3.16
151 152 6.249035 ACGTTTTACATGGTATTGGACTTG 57.751 37.500 0.00 0.00 0.00 3.16
152 153 6.596497 CCTACGTTTTACATGGTATTGGACTT 59.404 38.462 0.00 0.00 0.00 3.01
153 154 6.110707 CCTACGTTTTACATGGTATTGGACT 58.889 40.000 0.00 0.00 0.00 3.85
154 155 5.876460 ACCTACGTTTTACATGGTATTGGAC 59.124 40.000 0.00 0.00 0.00 4.02
155 156 6.052405 ACCTACGTTTTACATGGTATTGGA 57.948 37.500 0.00 0.00 0.00 3.53
156 157 6.746745 AACCTACGTTTTACATGGTATTGG 57.253 37.500 0.00 0.00 0.00 3.16
169 170 2.953648 CAGTTCCCCAAAACCTACGTTT 59.046 45.455 0.00 0.00 44.20 3.60
170 171 2.578786 CAGTTCCCCAAAACCTACGTT 58.421 47.619 0.00 0.00 0.00 3.99
171 172 1.202842 CCAGTTCCCCAAAACCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
172 173 1.530323 CCAGTTCCCCAAAACCTACG 58.470 55.000 0.00 0.00 0.00 3.51
173 174 1.203013 AGCCAGTTCCCCAAAACCTAC 60.203 52.381 0.00 0.00 0.00 3.18
174 175 1.074889 GAGCCAGTTCCCCAAAACCTA 59.925 52.381 0.00 0.00 0.00 3.08
175 176 0.178961 GAGCCAGTTCCCCAAAACCT 60.179 55.000 0.00 0.00 0.00 3.50
176 177 0.469144 TGAGCCAGTTCCCCAAAACC 60.469 55.000 0.00 0.00 0.00 3.27
177 178 1.068588 GTTGAGCCAGTTCCCCAAAAC 59.931 52.381 0.00 0.00 0.00 2.43
178 179 1.408969 GTTGAGCCAGTTCCCCAAAA 58.591 50.000 0.00 0.00 0.00 2.44
179 180 0.469144 GGTTGAGCCAGTTCCCCAAA 60.469 55.000 0.00 0.00 37.17 3.28
180 181 1.152830 GGTTGAGCCAGTTCCCCAA 59.847 57.895 0.00 0.00 37.17 4.12
181 182 2.840753 GGGTTGAGCCAGTTCCCCA 61.841 63.158 0.00 0.00 39.65 4.96
182 183 2.035783 GGGTTGAGCCAGTTCCCC 59.964 66.667 0.00 0.00 39.65 4.81
183 184 1.002011 GAGGGTTGAGCCAGTTCCC 60.002 63.158 1.66 0.00 39.65 3.97
184 185 0.110486 TTGAGGGTTGAGCCAGTTCC 59.890 55.000 1.66 0.00 39.65 3.62
185 186 1.882623 CTTTGAGGGTTGAGCCAGTTC 59.117 52.381 1.66 0.00 39.65 3.01
186 187 1.479389 CCTTTGAGGGTTGAGCCAGTT 60.479 52.381 1.66 0.00 39.65 3.16
187 188 0.111253 CCTTTGAGGGTTGAGCCAGT 59.889 55.000 1.66 0.00 39.65 4.00
188 189 2.952714 CCTTTGAGGGTTGAGCCAG 58.047 57.895 1.66 0.00 39.65 4.85
198 199 0.183731 GATAGGCCACCCCTTTGAGG 59.816 60.000 5.01 0.00 43.06 3.86
199 200 0.918983 TGATAGGCCACCCCTTTGAG 59.081 55.000 5.01 0.00 43.06 3.02
200 201 0.623723 GTGATAGGCCACCCCTTTGA 59.376 55.000 5.01 0.00 43.06 2.69
201 202 0.331278 TGTGATAGGCCACCCCTTTG 59.669 55.000 5.01 0.00 43.06 2.77
202 203 1.308877 ATGTGATAGGCCACCCCTTT 58.691 50.000 5.01 0.00 43.06 3.11
203 204 2.206322 TATGTGATAGGCCACCCCTT 57.794 50.000 5.01 0.00 43.06 3.95
205 206 7.814693 ATATATATATGTGATAGGCCACCCC 57.185 40.000 5.01 0.00 36.26 4.95
227 228 9.687210 GTATTGGACTTGTACGTCATCATTATA 57.313 33.333 0.00 0.00 35.63 0.98
228 229 7.656137 GGTATTGGACTTGTACGTCATCATTAT 59.344 37.037 0.00 0.00 35.63 1.28
229 230 6.982141 GGTATTGGACTTGTACGTCATCATTA 59.018 38.462 0.00 0.00 35.63 1.90
230 231 5.815740 GGTATTGGACTTGTACGTCATCATT 59.184 40.000 0.00 0.00 35.63 2.57
231 232 5.105106 TGGTATTGGACTTGTACGTCATCAT 60.105 40.000 0.00 0.00 35.63 2.45
232 233 4.221041 TGGTATTGGACTTGTACGTCATCA 59.779 41.667 0.00 0.00 35.63 3.07
233 234 4.751060 TGGTATTGGACTTGTACGTCATC 58.249 43.478 0.00 0.00 35.63 2.92
234 235 4.811969 TGGTATTGGACTTGTACGTCAT 57.188 40.909 0.00 0.00 35.63 3.06
235 236 4.603989 TTGGTATTGGACTTGTACGTCA 57.396 40.909 0.00 0.00 35.63 4.35
236 237 5.230726 CGTATTGGTATTGGACTTGTACGTC 59.769 44.000 0.00 0.00 32.20 4.34
237 238 5.104374 CGTATTGGTATTGGACTTGTACGT 58.896 41.667 0.00 0.00 32.20 3.57
238 239 4.505191 CCGTATTGGTATTGGACTTGTACG 59.495 45.833 0.00 0.00 34.34 3.67
239 240 5.978934 CCGTATTGGTATTGGACTTGTAC 57.021 43.478 0.00 0.00 0.00 2.90
253 254 5.180271 ACTGTGTAAACCATACCGTATTGG 58.820 41.667 5.81 5.81 46.41 3.16
254 255 6.477688 CCTACTGTGTAAACCATACCGTATTG 59.522 42.308 0.00 0.00 0.00 1.90
255 256 6.407299 CCCTACTGTGTAAACCATACCGTATT 60.407 42.308 0.00 0.00 0.00 1.89
256 257 5.069516 CCCTACTGTGTAAACCATACCGTAT 59.930 44.000 0.00 0.00 0.00 3.06
257 258 4.402155 CCCTACTGTGTAAACCATACCGTA 59.598 45.833 0.00 0.00 0.00 4.02
258 259 3.196254 CCCTACTGTGTAAACCATACCGT 59.804 47.826 0.00 0.00 0.00 4.83
259 260 3.788937 CCCTACTGTGTAAACCATACCG 58.211 50.000 0.00 0.00 0.00 4.02
260 261 3.199289 AGCCCTACTGTGTAAACCATACC 59.801 47.826 0.00 0.00 0.00 2.73
261 262 4.482952 AGCCCTACTGTGTAAACCATAC 57.517 45.455 0.00 0.00 0.00 2.39
262 263 5.024785 TGTAGCCCTACTGTGTAAACCATA 58.975 41.667 6.96 0.00 37.00 2.74
263 264 3.841845 TGTAGCCCTACTGTGTAAACCAT 59.158 43.478 6.96 0.00 37.00 3.55
264 265 3.241156 TGTAGCCCTACTGTGTAAACCA 58.759 45.455 6.96 0.00 37.00 3.67
265 266 3.967332 TGTAGCCCTACTGTGTAAACC 57.033 47.619 6.96 0.00 37.00 3.27
266 267 7.270047 TCATATTGTAGCCCTACTGTGTAAAC 58.730 38.462 6.96 0.00 37.00 2.01
267 268 7.426606 TCATATTGTAGCCCTACTGTGTAAA 57.573 36.000 6.96 0.00 37.00 2.01
268 269 7.125204 ACTTCATATTGTAGCCCTACTGTGTAA 59.875 37.037 6.96 0.00 37.00 2.41
269 270 6.610020 ACTTCATATTGTAGCCCTACTGTGTA 59.390 38.462 6.96 0.00 37.00 2.90
270 271 5.425539 ACTTCATATTGTAGCCCTACTGTGT 59.574 40.000 6.96 0.00 37.00 3.72
271 272 5.918608 ACTTCATATTGTAGCCCTACTGTG 58.081 41.667 6.96 0.00 37.00 3.66
272 273 5.900123 AGACTTCATATTGTAGCCCTACTGT 59.100 40.000 6.96 0.00 37.00 3.55
273 274 6.412362 AGACTTCATATTGTAGCCCTACTG 57.588 41.667 6.96 0.00 37.00 2.74
274 275 7.563924 TGTTAGACTTCATATTGTAGCCCTACT 59.436 37.037 6.96 0.00 37.00 2.57
275 276 7.723324 TGTTAGACTTCATATTGTAGCCCTAC 58.277 38.462 0.00 0.00 36.63 3.18
276 277 7.783119 TCTGTTAGACTTCATATTGTAGCCCTA 59.217 37.037 0.00 0.00 0.00 3.53
277 278 6.611642 TCTGTTAGACTTCATATTGTAGCCCT 59.388 38.462 0.00 0.00 0.00 5.19
278 279 6.817184 TCTGTTAGACTTCATATTGTAGCCC 58.183 40.000 0.00 0.00 0.00 5.19
279 280 7.493367 ACTCTGTTAGACTTCATATTGTAGCC 58.507 38.462 0.00 0.00 0.00 3.93
280 281 7.650104 GGACTCTGTTAGACTTCATATTGTAGC 59.350 40.741 0.00 0.00 0.00 3.58
281 282 8.687242 TGGACTCTGTTAGACTTCATATTGTAG 58.313 37.037 0.00 0.00 0.00 2.74
282 283 8.589701 TGGACTCTGTTAGACTTCATATTGTA 57.410 34.615 0.00 0.00 0.00 2.41
283 284 7.364232 CCTGGACTCTGTTAGACTTCATATTGT 60.364 40.741 0.00 0.00 0.00 2.71
284 285 6.983307 CCTGGACTCTGTTAGACTTCATATTG 59.017 42.308 0.00 0.00 0.00 1.90
285 286 6.670027 ACCTGGACTCTGTTAGACTTCATATT 59.330 38.462 0.00 0.00 0.00 1.28
286 287 6.198639 ACCTGGACTCTGTTAGACTTCATAT 58.801 40.000 0.00 0.00 0.00 1.78
287 288 5.580998 ACCTGGACTCTGTTAGACTTCATA 58.419 41.667 0.00 0.00 0.00 2.15
288 289 4.421131 ACCTGGACTCTGTTAGACTTCAT 58.579 43.478 0.00 0.00 0.00 2.57
289 290 3.845860 ACCTGGACTCTGTTAGACTTCA 58.154 45.455 0.00 0.00 0.00 3.02
290 291 5.680151 GCATACCTGGACTCTGTTAGACTTC 60.680 48.000 0.00 0.00 0.00 3.01
291 292 4.160626 GCATACCTGGACTCTGTTAGACTT 59.839 45.833 0.00 0.00 0.00 3.01
292 293 3.702045 GCATACCTGGACTCTGTTAGACT 59.298 47.826 0.00 0.00 0.00 3.24
293 294 3.489398 CGCATACCTGGACTCTGTTAGAC 60.489 52.174 0.00 0.00 0.00 2.59
294 295 2.688446 CGCATACCTGGACTCTGTTAGA 59.312 50.000 0.00 0.00 0.00 2.10
295 296 2.223829 CCGCATACCTGGACTCTGTTAG 60.224 54.545 0.00 0.00 0.00 2.34
296 297 1.754803 CCGCATACCTGGACTCTGTTA 59.245 52.381 0.00 0.00 0.00 2.41
297 298 0.537188 CCGCATACCTGGACTCTGTT 59.463 55.000 0.00 0.00 0.00 3.16
298 299 0.324368 TCCGCATACCTGGACTCTGT 60.324 55.000 0.00 0.00 0.00 3.41
299 300 0.387202 CTCCGCATACCTGGACTCTG 59.613 60.000 0.00 0.00 0.00 3.35
300 301 0.033011 ACTCCGCATACCTGGACTCT 60.033 55.000 0.00 0.00 0.00 3.24
463 662 5.943349 TGGATAAGGACTAAAACCATCGA 57.057 39.130 0.00 0.00 0.00 3.59
474 692 4.206244 ACAGCCTAGATGGATAAGGACT 57.794 45.455 0.00 0.00 38.35 3.85
475 693 4.965200 AACAGCCTAGATGGATAAGGAC 57.035 45.455 0.00 0.00 38.35 3.85
476 694 6.520742 GCATAAACAGCCTAGATGGATAAGGA 60.521 42.308 0.00 0.00 38.35 3.36
477 695 5.645497 GCATAAACAGCCTAGATGGATAAGG 59.355 44.000 0.00 0.00 38.35 2.69
478 696 6.233434 TGCATAAACAGCCTAGATGGATAAG 58.767 40.000 0.00 0.00 38.35 1.73
479 697 6.186420 TGCATAAACAGCCTAGATGGATAA 57.814 37.500 0.00 0.00 38.35 1.75
480 698 5.823861 TGCATAAACAGCCTAGATGGATA 57.176 39.130 0.00 0.00 38.35 2.59
481 699 4.712051 TGCATAAACAGCCTAGATGGAT 57.288 40.909 0.00 0.00 38.35 3.41
482 700 4.712051 ATGCATAAACAGCCTAGATGGA 57.288 40.909 0.00 0.00 38.35 3.41
483 701 5.533903 AGAAATGCATAAACAGCCTAGATGG 59.466 40.000 0.00 0.00 39.35 3.51
484 702 6.630444 AGAAATGCATAAACAGCCTAGATG 57.370 37.500 0.00 0.00 0.00 2.90
485 703 7.512992 ACTAGAAATGCATAAACAGCCTAGAT 58.487 34.615 0.00 0.00 0.00 1.98
486 704 6.889198 ACTAGAAATGCATAAACAGCCTAGA 58.111 36.000 0.00 0.00 0.00 2.43
507 725 3.069872 TCTTACCCAAACAGACGCAACTA 59.930 43.478 0.00 0.00 0.00 2.24
526 744 1.635487 TGGCTAGGGTGCATCTTTCTT 59.365 47.619 0.00 0.00 34.04 2.52
613 854 4.614535 GCATGAAAGTGCTAACTGACCTTG 60.615 45.833 0.00 0.00 41.82 3.61
654 895 5.013258 AGAGTCCTAACTGACCTTACCTT 57.987 43.478 0.00 0.00 35.28 3.50
655 896 4.678538 AGAGTCCTAACTGACCTTACCT 57.321 45.455 0.00 0.00 35.28 3.08
660 901 6.019656 TGATGATAGAGTCCTAACTGACCT 57.980 41.667 0.00 0.00 35.28 3.85
661 902 6.491745 TCATGATGATAGAGTCCTAACTGACC 59.508 42.308 0.00 0.00 35.28 4.02
662 903 7.367285 GTCATGATGATAGAGTCCTAACTGAC 58.633 42.308 0.00 0.00 35.28 3.51
663 904 6.205658 CGTCATGATGATAGAGTCCTAACTGA 59.794 42.308 9.46 0.00 35.28 3.41
664 905 6.016693 ACGTCATGATGATAGAGTCCTAACTG 60.017 42.308 21.75 0.00 35.28 3.16
666 907 6.320494 ACGTCATGATGATAGAGTCCTAAC 57.680 41.667 21.75 0.00 0.00 2.34
667 908 6.293462 CGAACGTCATGATGATAGAGTCCTAA 60.293 42.308 21.75 0.00 0.00 2.69
668 909 5.179555 CGAACGTCATGATGATAGAGTCCTA 59.820 44.000 21.75 0.00 0.00 2.94
669 910 4.023622 CGAACGTCATGATGATAGAGTCCT 60.024 45.833 21.75 0.00 0.00 3.85
670 911 4.222886 CGAACGTCATGATGATAGAGTCC 58.777 47.826 21.75 0.00 0.00 3.85
703 988 6.356556 TCTGAAAAAGAACAGAATGGAGACA 58.643 36.000 0.00 0.00 43.62 3.41
721 1006 5.592104 TGTCAGCGGAGTTATATCTGAAA 57.408 39.130 0.00 0.00 35.81 2.69
884 3362 6.516693 GCTTTACCTGCTTGTATTTTTGGTCT 60.517 38.462 0.00 0.00 0.00 3.85
966 3487 2.113243 AACCCAGTTCTCACGAGCCC 62.113 60.000 0.00 0.00 0.00 5.19
1080 3603 2.257371 GCGTGCTCGTACACCAGA 59.743 61.111 10.18 0.00 37.25 3.86
1116 3639 1.006571 GACACGCCTTCCTTCGTCA 60.007 57.895 0.00 0.00 36.73 4.35
1285 3808 0.321564 AAAGCCGTACTCTGCATGCA 60.322 50.000 21.29 21.29 0.00 3.96
1286 3809 1.594862 CTAAAGCCGTACTCTGCATGC 59.405 52.381 11.82 11.82 0.00 4.06
1290 3813 1.641577 CACCTAAAGCCGTACTCTGC 58.358 55.000 0.00 0.00 0.00 4.26
1291 3814 1.822990 TCCACCTAAAGCCGTACTCTG 59.177 52.381 0.00 0.00 0.00 3.35
1294 3817 4.900054 AGATATTCCACCTAAAGCCGTACT 59.100 41.667 0.00 0.00 0.00 2.73
1296 3819 4.897076 TCAGATATTCCACCTAAAGCCGTA 59.103 41.667 0.00 0.00 0.00 4.02
1297 3820 3.709653 TCAGATATTCCACCTAAAGCCGT 59.290 43.478 0.00 0.00 0.00 5.68
1298 3821 4.336889 TCAGATATTCCACCTAAAGCCG 57.663 45.455 0.00 0.00 0.00 5.52
1392 3941 6.193514 TCAAATACACATGCACCAGTAATG 57.806 37.500 0.00 0.00 0.00 1.90
1396 3945 3.444742 CCATCAAATACACATGCACCAGT 59.555 43.478 0.00 0.00 0.00 4.00
1587 4166 2.574399 GCGGAGAAGAAGGAGCGT 59.426 61.111 0.00 0.00 0.00 5.07
1615 4194 4.293648 TGACGAGGCGTGGTGTGG 62.294 66.667 0.00 0.00 41.37 4.17
1616 4195 3.036084 GTGACGAGGCGTGGTGTG 61.036 66.667 0.00 0.00 41.37 3.82
1617 4196 4.640855 CGTGACGAGGCGTGGTGT 62.641 66.667 0.00 0.00 41.37 4.16
1618 4197 4.337060 TCGTGACGAGGCGTGGTG 62.337 66.667 2.39 0.00 41.37 4.17
1619 4198 4.338539 GTCGTGACGAGGCGTGGT 62.339 66.667 8.41 0.00 41.37 4.16
1699 4279 0.680921 CGAACAGCCCATGGTCCAAT 60.681 55.000 11.73 0.00 43.24 3.16
1906 4487 3.005539 GAGGCACCTGCTCTCCCA 61.006 66.667 0.00 0.00 41.70 4.37
1935 4516 1.218047 CCGGGCAAGATCTCGAACA 59.782 57.895 0.00 0.00 0.00 3.18
1972 4553 2.893398 GTCGAGACGCTCCCCAAT 59.107 61.111 0.00 0.00 0.00 3.16
1994 4575 3.467226 GGGACGGATCGGGAGCAA 61.467 66.667 5.18 0.00 0.00 3.91
2197 4780 2.169352 ACCGAAACATCTATGAGCAGCT 59.831 45.455 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.