Multiple sequence alignment - TraesCS3D01G142700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G142700 chr3D 100.000 8704 0 0 1 8704 104700356 104709059 0.000000e+00 16074.0
1 TraesCS3D01G142700 chr3D 96.914 162 5 0 1 162 104693235 104693396 1.110000e-68 272.0
2 TraesCS3D01G142700 chr3D 81.063 301 47 8 6370 6663 6685221 6684924 1.890000e-56 231.0
3 TraesCS3D01G142700 chr3D 93.548 62 4 0 4955 5016 138887432 138887371 9.300000e-15 93.5
4 TraesCS3D01G142700 chr3D 80.909 110 8 8 1740 1847 26819900 26819998 3.370000e-09 75.0
5 TraesCS3D01G142700 chr3D 92.308 39 3 0 467 505 518545281 518545243 1.000000e-03 56.5
6 TraesCS3D01G142700 chr3B 97.684 5743 99 16 2683 8417 156570552 156576268 0.000000e+00 9838.0
7 TraesCS3D01G142700 chr3B 97.176 2160 27 13 505 2656 156567362 156569495 0.000000e+00 3620.0
8 TraesCS3D01G142700 chr3B 92.166 434 25 8 27 456 156566929 156567357 9.670000e-169 604.0
9 TraesCS3D01G142700 chr3B 96.104 77 3 0 7447 7523 145505067 145505143 9.170000e-25 126.0
10 TraesCS3D01G142700 chr3B 81.707 164 16 4 7447 7596 745549208 745549045 3.300000e-24 124.0
11 TraesCS3D01G142700 chr3B 88.889 99 7 4 7427 7523 349304779 349304875 1.530000e-22 119.0
12 TraesCS3D01G142700 chr3B 98.246 57 1 0 4960 5016 486386712 486386656 5.560000e-17 100.0
13 TraesCS3D01G142700 chr3B 100.000 29 0 0 1 29 400653427 400653399 4.000000e-03 54.7
14 TraesCS3D01G142700 chr3A 91.597 2285 110 30 2399 4650 550724397 550722162 0.000000e+00 3081.0
15 TraesCS3D01G142700 chr3A 89.779 1448 109 23 5026 6453 550721588 550720160 0.000000e+00 1818.0
16 TraesCS3D01G142700 chr3A 89.816 815 50 13 544 1351 550726763 550725975 0.000000e+00 1014.0
17 TraesCS3D01G142700 chr3A 92.374 695 46 4 6752 7441 550719737 550719045 0.000000e+00 983.0
18 TraesCS3D01G142700 chr3A 88.975 517 41 13 7596 8098 550719033 550718519 7.420000e-175 625.0
19 TraesCS3D01G142700 chr3A 90.991 444 39 1 1841 2284 550725552 550725110 1.620000e-166 597.0
20 TraesCS3D01G142700 chr3A 86.494 348 25 8 6370 6715 550720066 550719739 6.420000e-96 363.0
21 TraesCS3D01G142700 chr3A 86.145 332 24 9 4647 4960 550721927 550721600 1.080000e-88 339.0
22 TraesCS3D01G142700 chr3A 84.146 164 12 3 7444 7593 607058409 607058572 7.040000e-31 147.0
23 TraesCS3D01G142700 chr3A 88.542 96 7 4 7430 7523 272770277 272770184 7.140000e-21 113.0
24 TraesCS3D01G142700 chr3A 95.385 65 3 0 8459 8523 639088687 639088751 4.300000e-18 104.0
25 TraesCS3D01G142700 chr2B 85.549 346 45 5 26 369 104296447 104296789 2.990000e-94 357.0
26 TraesCS3D01G142700 chr2B 90.789 76 4 3 8449 8523 42149297 42149224 2.000000e-16 99.0
27 TraesCS3D01G142700 chr4B 84.950 299 35 7 6368 6663 454739553 454739262 2.380000e-75 294.0
28 TraesCS3D01G142700 chr4B 96.923 65 2 0 8464 8528 280887376 280887440 9.240000e-20 110.0
29 TraesCS3D01G142700 chr4B 90.476 42 3 1 465 505 30850440 30850399 4.000000e-03 54.7
30 TraesCS3D01G142700 chr1B 78.522 433 73 16 5023 5447 193285478 193285898 5.180000e-67 267.0
31 TraesCS3D01G142700 chr1B 84.507 213 32 1 7211 7423 193287341 193287552 8.850000e-50 209.0
32 TraesCS3D01G142700 chr1B 80.921 152 24 4 7447 7593 93115993 93115842 1.990000e-21 115.0
33 TraesCS3D01G142700 chr1B 92.105 38 3 0 468 505 636860200 636860163 4.000000e-03 54.7
34 TraesCS3D01G142700 chr1D 78.089 429 82 9 5023 5447 143957693 143958113 2.410000e-65 261.0
35 TraesCS3D01G142700 chr1D 84.977 213 31 1 7211 7423 143959576 143959787 1.900000e-51 215.0
36 TraesCS3D01G142700 chr1D 85.629 167 22 2 6884 7049 143959320 143959485 3.230000e-39 174.0
37 TraesCS3D01G142700 chr1D 89.552 67 6 1 1733 1798 375958884 375958818 5.600000e-12 84.2
38 TraesCS3D01G142700 chr1A 77.982 436 76 17 5023 5450 145373503 145373080 1.120000e-63 255.0
39 TraesCS3D01G142700 chr1A 98.148 54 1 0 1745 1798 357764926 357764979 2.590000e-15 95.3
40 TraesCS3D01G142700 chr1A 76.582 158 23 7 7447 7590 8738366 8738523 3.370000e-09 75.0
41 TraesCS3D01G142700 chr5D 79.801 302 50 9 6370 6663 305889092 305889390 8.850000e-50 209.0
42 TraesCS3D01G142700 chr5D 96.296 54 2 0 1745 1798 22271715 22271662 1.200000e-13 89.8
43 TraesCS3D01G142700 chr5D 83.838 99 8 4 1745 1842 356319446 356319537 4.330000e-13 87.9
44 TraesCS3D01G142700 chr2D 79.070 301 53 7 6370 6663 88351471 88351768 1.920000e-46 198.0
45 TraesCS3D01G142700 chr2D 80.909 110 8 8 1740 1847 72514719 72514621 3.370000e-09 75.0
46 TraesCS3D01G142700 chr2D 92.105 38 3 0 468 505 54584860 54584823 4.000000e-03 54.7
47 TraesCS3D01G142700 chr6D 83.784 185 23 7 5987 6166 10669399 10669581 1.500000e-37 169.0
48 TraesCS3D01G142700 chr6D 82.609 161 22 6 5986 6142 108776266 108776424 4.240000e-28 137.0
49 TraesCS3D01G142700 chr6D 92.857 70 3 2 8454 8523 312104064 312104131 5.560000e-17 100.0
50 TraesCS3D01G142700 chr6D 95.082 61 3 0 1738 1798 84938545 84938485 7.190000e-16 97.1
51 TraesCS3D01G142700 chr6D 98.148 54 1 0 1745 1798 84938463 84938516 2.590000e-15 95.3
52 TraesCS3D01G142700 chr6D 92.105 38 3 0 468 505 384227299 384227262 4.000000e-03 54.7
53 TraesCS3D01G142700 chr7D 82.895 152 19 7 5984 6131 623010862 623010714 7.090000e-26 130.0
54 TraesCS3D01G142700 chr7D 81.905 105 6 8 1745 1847 59311695 59311788 9.370000e-10 76.8
55 TraesCS3D01G142700 chr7D 90.698 43 3 1 455 496 161493952 161493994 1.000000e-03 56.5
56 TraesCS3D01G142700 chr7D 100.000 29 0 0 468 496 25009534 25009562 4.000000e-03 54.7
57 TraesCS3D01G142700 chr5B 93.827 81 5 0 7443 7523 615714234 615714154 1.190000e-23 122.0
58 TraesCS3D01G142700 chr5B 95.161 62 3 0 4957 5018 27817219 27817280 2.000000e-16 99.0
59 TraesCS3D01G142700 chr5B 85.106 94 11 2 8432 8523 595659979 595660071 9.300000e-15 93.5
60 TraesCS3D01G142700 chr5B 96.296 54 2 0 1745 1798 568409762 568409709 1.200000e-13 89.8
61 TraesCS3D01G142700 chr5B 92.105 38 3 0 468 505 440031260 440031223 4.000000e-03 54.7
62 TraesCS3D01G142700 chr5A 93.750 80 5 0 7444 7523 621020716 621020637 4.270000e-23 121.0
63 TraesCS3D01G142700 chr5A 95.349 43 2 0 7550 7592 693639815 693639857 1.570000e-07 69.4
64 TraesCS3D01G142700 chr5A 94.872 39 2 0 467 505 599424349 599424387 2.620000e-05 62.1
65 TraesCS3D01G142700 chr5A 88.000 50 6 0 7551 7600 695381790 695381741 9.440000e-05 60.2
66 TraesCS3D01G142700 chr5A 88.000 50 6 0 7551 7600 695408820 695408771 9.440000e-05 60.2
67 TraesCS3D01G142700 chr5A 88.000 50 6 0 7551 7600 695434190 695434141 9.440000e-05 60.2
68 TraesCS3D01G142700 chr4A 93.506 77 5 0 7447 7523 583713488 583713412 1.990000e-21 115.0
69 TraesCS3D01G142700 chr4A 92.958 71 3 2 8454 8523 476748085 476748154 1.550000e-17 102.0
70 TraesCS3D01G142700 chr4A 96.667 60 2 0 4957 5016 618462261 618462202 5.560000e-17 100.0
71 TraesCS3D01G142700 chr4A 96.552 58 2 0 4959 5016 590228011 590227954 7.190000e-16 97.1
72 TraesCS3D01G142700 chr4A 93.443 61 4 0 1738 1798 130241403 130241343 3.350000e-14 91.6
73 TraesCS3D01G142700 chr7A 95.385 65 3 0 8459 8523 442265747 442265811 4.300000e-18 104.0
74 TraesCS3D01G142700 chr7B 94.030 67 4 0 8457 8523 266185906 266185972 1.550000e-17 102.0
75 TraesCS3D01G142700 chr7B 91.892 74 4 2 8450 8523 705656865 705656936 1.550000e-17 102.0
76 TraesCS3D01G142700 chr7B 98.246 57 1 0 4960 5016 428965845 428965901 5.560000e-17 100.0
77 TraesCS3D01G142700 chr7B 92.424 66 4 1 4952 5016 465591228 465591163 9.300000e-15 93.5
78 TraesCS3D01G142700 chr7B 89.796 49 5 0 8423 8471 719654103 719654055 7.290000e-06 63.9
79 TraesCS3D01G142700 chr6B 95.000 60 3 0 4960 5019 636383427 636383486 2.590000e-15 95.3
80 TraesCS3D01G142700 chr6A 87.719 57 7 0 7538 7594 417446279 417446223 5.640000e-07 67.6
81 TraesCS3D01G142700 chr4D 100.000 29 0 0 1 29 414042006 414042034 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G142700 chr3D 104700356 104709059 8703 False 16074.000000 16074 100.000000 1 8704 1 chr3D.!!$F3 8703
1 TraesCS3D01G142700 chr3B 156566929 156576268 9339 False 4687.333333 9838 95.675333 27 8417 3 chr3B.!!$F3 8390
2 TraesCS3D01G142700 chr3A 550718519 550726763 8244 True 1102.500000 3081 89.521375 544 8098 8 chr3A.!!$R2 7554
3 TraesCS3D01G142700 chr1B 193285478 193287552 2074 False 238.000000 267 81.514500 5023 7423 2 chr1B.!!$F1 2400
4 TraesCS3D01G142700 chr1D 143957693 143959787 2094 False 216.666667 261 82.898333 5023 7423 3 chr1D.!!$F1 2400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 390 0.400213 ATGGGGACGTTCTTTGCTCA 59.600 50.000 0.00 0.00 0.00 4.26 F
555 558 1.394618 AGTCCGGAGCAGTCTATCAC 58.605 55.000 3.06 0.00 0.00 3.06 F
1242 1251 2.229302 GGAGGACGGTGAGATAGTATGC 59.771 54.545 0.00 0.00 0.00 3.14 F
1246 1255 3.068307 GGACGGTGAGATAGTATGCTTGT 59.932 47.826 0.00 0.00 0.00 3.16 F
2982 4733 0.108186 TGCCATCTGGTACTGAAGCG 60.108 55.000 0.00 0.00 40.59 4.68 F
3298 5052 3.243975 CCGTACATAGTGGACCATTACCC 60.244 52.174 0.00 0.00 0.00 3.69 F
3500 5254 3.397955 AGGTTATGGATATGTTGGGACCC 59.602 47.826 2.45 2.45 0.00 4.46 F
3716 5470 5.047377 GGTAATTTGGTGCTCCATTCTTCAA 60.047 40.000 8.61 0.00 43.91 2.69 F
3768 5523 7.962964 TTCTGGCTAACAATACAGTATATGC 57.037 36.000 0.00 0.00 32.92 3.14 F
4448 6203 8.225603 AGTATGTTGTGAACTTGAAGTTTGAT 57.774 30.769 12.37 1.84 38.80 2.57 F
5757 7773 0.984230 TCCCAGGTCACCATTCTGTC 59.016 55.000 0.00 0.00 0.00 3.51 F
6485 9293 0.829333 CAGCCAGCTCTCCTGTACAT 59.171 55.000 0.00 0.00 40.06 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2232 1.203137 CGGGAGAGGGGGTCATATGTA 60.203 57.143 1.90 0.00 0.00 2.29 R
2533 3229 1.218230 GCAGCTATGCGGCTCTACAC 61.218 60.000 7.37 0.00 45.50 2.90 R
2664 3364 2.687200 CGACCCCCATCCCAGACA 60.687 66.667 0.00 0.00 0.00 3.41 R
3155 4909 6.150474 GCTGCAAGAGGTAGGTTTAACATAAA 59.850 38.462 0.00 0.00 34.07 1.40 R
4448 6203 2.570415 TGGCGTAATTGGGTTCTTCA 57.430 45.000 0.00 0.00 0.00 3.02 R
5009 7019 8.330302 CAATAAAGTATTAGGCAGCATTTTTGC 58.670 33.333 0.00 0.00 40.80 3.68 R
5229 7242 8.506168 AGTAACACAGTGAAAAATTCTCTTGA 57.494 30.769 7.81 0.00 31.64 3.02 R
5528 7544 4.012374 ACGAATGGCAAACAAGATCTCAT 58.988 39.130 0.00 0.00 0.00 2.90 R
5757 7773 4.940046 AGTTTTGGTAGTCAGCATCAGATG 59.060 41.667 5.98 5.98 30.88 2.90 R
5777 7793 9.793259 TGTTGGAGTAGATTTTAAAGATCAGTT 57.207 29.630 0.00 0.00 0.00 3.16 R
7442 10257 0.543410 TAGGAACGGAGGGAGTGCAA 60.543 55.000 0.00 0.00 0.00 4.08 R
8127 10959 0.106015 AGGGGAAGGTATTGCATGGC 60.106 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.378230 TTGGACAATCTATTGGAGATGCT 57.622 39.130 7.56 0.00 44.68 3.79
24 25 4.965814 TGGACAATCTATTGGAGATGCTC 58.034 43.478 7.56 0.00 44.68 4.26
25 26 4.657504 TGGACAATCTATTGGAGATGCTCT 59.342 41.667 7.56 0.00 44.68 4.09
32 33 5.187576 ATCTATTGGAGATGCTCTAAGAGCC 59.812 44.000 0.00 0.00 44.61 4.70
57 58 6.003326 TGTTCTAAATTGATCAACAGAGCCA 58.997 36.000 11.07 10.76 0.00 4.75
95 96 0.600255 ACCTCCGAAGAGCAACAACG 60.600 55.000 0.00 0.00 38.96 4.10
96 97 1.493311 CTCCGAAGAGCAACAACGC 59.507 57.895 0.00 0.00 32.13 4.84
115 117 2.351350 CGCTAAAAGGCCAATCGTTGTT 60.351 45.455 5.01 0.00 0.00 2.83
116 118 2.986479 GCTAAAAGGCCAATCGTTGTTG 59.014 45.455 5.01 0.00 0.00 3.33
168 170 1.381191 TAGCAGGTGGATGGCGAGA 60.381 57.895 0.00 0.00 0.00 4.04
175 177 1.455773 TGGATGGCGAGACTCGGAT 60.456 57.895 25.31 0.00 40.84 4.18
180 182 2.646143 GCGAGACTCGGATAGCCC 59.354 66.667 25.31 3.92 40.84 5.19
181 183 2.921797 GCGAGACTCGGATAGCCCC 61.922 68.421 25.31 3.18 40.84 5.80
186 188 1.913419 AGACTCGGATAGCCCCAAAAA 59.087 47.619 0.00 0.00 0.00 1.94
224 226 1.455786 CCGCAATAGTGTACATAGCGC 59.544 52.381 18.40 0.00 42.07 5.92
225 227 2.394708 CGCAATAGTGTACATAGCGCT 58.605 47.619 17.26 17.26 37.20 5.92
226 228 2.794910 CGCAATAGTGTACATAGCGCTT 59.205 45.455 18.68 0.00 37.20 4.68
227 229 3.121328 CGCAATAGTGTACATAGCGCTTC 60.121 47.826 18.68 2.12 37.20 3.86
269 271 2.492019 GTGAGCACCAAAGAAACCAC 57.508 50.000 0.00 0.00 0.00 4.16
327 329 1.533033 TCCCAACAGAGGAGCGACA 60.533 57.895 0.00 0.00 0.00 4.35
329 331 1.374758 CCAACAGAGGAGCGACACC 60.375 63.158 0.00 0.00 0.00 4.16
353 355 2.954868 GCCGCGTACACCGATCAG 60.955 66.667 4.92 0.00 39.56 2.90
355 357 1.723273 CCGCGTACACCGATCAGTA 59.277 57.895 4.92 0.00 39.56 2.74
358 360 1.553308 GCGTACACCGATCAGTAACC 58.447 55.000 0.00 0.00 39.56 2.85
372 374 5.515797 TCAGTAACCGAATCTAGACATGG 57.484 43.478 0.00 0.00 0.00 3.66
388 390 0.400213 ATGGGGACGTTCTTTGCTCA 59.600 50.000 0.00 0.00 0.00 4.26
466 469 9.978336 AACCTAGTATAAAGTACTCTCTCTGTT 57.022 33.333 0.00 0.00 0.00 3.16
467 470 9.978336 ACCTAGTATAAAGTACTCTCTCTGTTT 57.022 33.333 0.00 0.00 0.00 2.83
476 479 9.832445 AAAGTACTCTCTCTGTTTAATGTCAAA 57.168 29.630 0.00 0.00 0.00 2.69
477 480 9.832445 AAGTACTCTCTCTGTTTAATGTCAAAA 57.168 29.630 0.00 0.00 0.00 2.44
478 481 9.832445 AGTACTCTCTCTGTTTAATGTCAAAAA 57.168 29.630 0.00 0.00 0.00 1.94
479 482 9.865484 GTACTCTCTCTGTTTAATGTCAAAAAC 57.135 33.333 7.05 7.05 36.38 2.43
480 483 7.630924 ACTCTCTCTGTTTAATGTCAAAAACG 58.369 34.615 8.71 0.00 38.21 3.60
481 484 7.280205 ACTCTCTCTGTTTAATGTCAAAAACGT 59.720 33.333 8.71 0.00 38.21 3.99
482 485 7.981142 TCTCTCTGTTTAATGTCAAAAACGTT 58.019 30.769 0.00 0.00 38.21 3.99
483 486 8.455682 TCTCTCTGTTTAATGTCAAAAACGTTT 58.544 29.630 7.96 7.96 38.21 3.60
484 487 8.973835 TCTCTGTTTAATGTCAAAAACGTTTT 57.026 26.923 20.26 20.26 38.21 2.43
485 488 9.413048 TCTCTGTTTAATGTCAAAAACGTTTTT 57.587 25.926 28.62 28.62 40.75 1.94
496 499 9.640963 TGTCAAAAACGTTTTTATATTATGGGG 57.359 29.630 32.12 18.65 38.23 4.96
497 500 9.642327 GTCAAAAACGTTTTTATATTATGGGGT 57.358 29.630 32.12 8.97 38.23 4.95
498 501 9.640963 TCAAAAACGTTTTTATATTATGGGGTG 57.359 29.630 32.12 18.91 38.23 4.61
499 502 9.640963 CAAAAACGTTTTTATATTATGGGGTGA 57.359 29.630 32.12 0.00 38.23 4.02
501 504 9.863845 AAAACGTTTTTATATTATGGGGTGAAG 57.136 29.630 20.26 0.00 0.00 3.02
502 505 7.576861 ACGTTTTTATATTATGGGGTGAAGG 57.423 36.000 0.00 0.00 0.00 3.46
503 506 6.548251 ACGTTTTTATATTATGGGGTGAAGGG 59.452 38.462 0.00 0.00 0.00 3.95
504 507 6.773685 CGTTTTTATATTATGGGGTGAAGGGA 59.226 38.462 0.00 0.00 0.00 4.20
509 512 9.736819 TTTATATTATGGGGTGAAGGGATTTTT 57.263 29.630 0.00 0.00 0.00 1.94
555 558 1.394618 AGTCCGGAGCAGTCTATCAC 58.605 55.000 3.06 0.00 0.00 3.06
731 734 2.284405 TCCCCGTGTCTTCCCCTC 60.284 66.667 0.00 0.00 0.00 4.30
1110 1113 4.263374 CCTGAGACGGTATGGTATCTCCTA 60.263 50.000 0.00 0.00 37.40 2.94
1241 1250 2.484651 CGGAGGACGGTGAGATAGTATG 59.515 54.545 0.00 0.00 39.42 2.39
1242 1251 2.229302 GGAGGACGGTGAGATAGTATGC 59.771 54.545 0.00 0.00 0.00 3.14
1243 1252 3.150767 GAGGACGGTGAGATAGTATGCT 58.849 50.000 0.00 0.00 0.00 3.79
1244 1253 3.567397 AGGACGGTGAGATAGTATGCTT 58.433 45.455 0.00 0.00 0.00 3.91
1245 1254 3.319405 AGGACGGTGAGATAGTATGCTTG 59.681 47.826 0.00 0.00 0.00 4.01
1246 1255 3.068307 GGACGGTGAGATAGTATGCTTGT 59.932 47.826 0.00 0.00 0.00 3.16
1247 1256 4.045104 GACGGTGAGATAGTATGCTTGTG 58.955 47.826 0.00 0.00 0.00 3.33
1248 1257 3.447586 ACGGTGAGATAGTATGCTTGTGT 59.552 43.478 0.00 0.00 0.00 3.72
1249 1258 4.643334 ACGGTGAGATAGTATGCTTGTGTA 59.357 41.667 0.00 0.00 0.00 2.90
2151 2247 7.458397 TGTTGATTATTACATATGACCCCCTC 58.542 38.462 10.38 0.45 0.00 4.30
2183 2279 5.323371 TGTTTGCTTTATAATGCTCCACC 57.677 39.130 20.32 7.92 0.00 4.61
2311 2444 5.330455 TGTGCATTTTTCAACCTTGTACA 57.670 34.783 0.00 0.00 31.85 2.90
2533 3229 4.094887 AGGTTTCACTTTGTATATGCGCTG 59.905 41.667 9.73 0.00 0.00 5.18
2663 3363 8.889263 TTACATCATGTATAAAGGCCAGGGGC 62.889 46.154 5.01 3.25 39.29 5.80
2673 3373 2.693864 CCAGGGGCTGTCTGGGAT 60.694 66.667 12.11 0.00 45.95 3.85
2680 3380 3.049080 GCTGTCTGGGATGGGGGTC 62.049 68.421 0.00 0.00 0.00 4.46
2982 4733 0.108186 TGCCATCTGGTACTGAAGCG 60.108 55.000 0.00 0.00 40.59 4.68
2988 4739 4.693566 CCATCTGGTACTGAAGCGTTTTTA 59.306 41.667 0.00 0.00 40.32 1.52
3155 4909 9.975218 AGTTGGATATATTGTACCTTCTTTTGT 57.025 29.630 0.00 0.00 0.00 2.83
3290 5044 4.913335 TCATTCTCCGTACATAGTGGAC 57.087 45.455 0.00 0.00 0.00 4.02
3298 5052 3.243975 CCGTACATAGTGGACCATTACCC 60.244 52.174 0.00 0.00 0.00 3.69
3500 5254 3.397955 AGGTTATGGATATGTTGGGACCC 59.602 47.826 2.45 2.45 0.00 4.46
3716 5470 5.047377 GGTAATTTGGTGCTCCATTCTTCAA 60.047 40.000 8.61 0.00 43.91 2.69
3768 5523 7.962964 TTCTGGCTAACAATACAGTATATGC 57.037 36.000 0.00 0.00 32.92 3.14
4448 6203 8.225603 AGTATGTTGTGAACTTGAAGTTTGAT 57.774 30.769 12.37 1.84 38.80 2.57
4657 6412 8.463930 ACTTACCAAGAATTTCAGTTGATTGA 57.536 30.769 0.00 0.00 0.00 2.57
5757 7773 0.984230 TCCCAGGTCACCATTCTGTC 59.016 55.000 0.00 0.00 0.00 3.51
5777 7793 4.020307 TGTCATCTGATGCTGACTACCAAA 60.020 41.667 12.78 0.00 41.83 3.28
6485 9293 0.829333 CAGCCAGCTCTCCTGTACAT 59.171 55.000 0.00 0.00 40.06 2.29
6493 9301 2.033550 GCTCTCCTGTACATGTACCTCG 59.966 54.545 28.67 18.09 35.26 4.63
6676 9486 6.927933 ATGTAAAAACGCTAATGTTTGCTC 57.072 33.333 0.00 0.00 41.01 4.26
6755 9565 6.169557 AGATGTGCCAATAATGATGCATTT 57.830 33.333 0.00 0.00 35.54 2.32
6843 9657 7.537596 AACAGTTGAATGTTGGAATATTGGA 57.462 32.000 0.00 0.00 41.76 3.53
6856 9670 9.014297 GTTGGAATATTGGATCCTGGTATTTAG 57.986 37.037 14.23 0.00 36.64 1.85
6880 9694 7.387643 AGGGACAAGAACTGACTTTAAGTATC 58.612 38.462 0.00 0.00 0.00 2.24
7169 9983 9.822727 TTGAGGGGACTTCTAAAAGAATTTAAT 57.177 29.630 0.00 0.00 44.43 1.40
7215 10029 4.982241 TTGTGAGGATCTGAAGAAACCT 57.018 40.909 8.51 8.51 37.52 3.50
7442 10257 6.592870 GGTGACTTACCTTTCCTGCTTATAT 58.407 40.000 0.00 0.00 46.51 0.86
7445 10260 6.542370 TGACTTACCTTTCCTGCTTATATTGC 59.458 38.462 0.00 0.00 0.00 3.56
7466 10281 3.071167 GCACTCCCTCCGTTCCTAAATAT 59.929 47.826 0.00 0.00 0.00 1.28
7523 10338 5.353400 TGCAGAGCAAAATGAGTGAATCTAG 59.647 40.000 0.00 0.00 34.76 2.43
7548 10363 3.935993 ACATCCATATGTAGCCCGC 57.064 52.632 1.24 0.00 44.66 6.13
7566 10381 6.172630 AGCCCGCATTGAAATCTTTAAAAAT 58.827 32.000 0.00 0.00 0.00 1.82
7981 10811 3.511477 ACTGTACCTTGAGATGACTGGT 58.489 45.455 0.00 0.00 35.05 4.00
8054 10884 1.713597 GGCTGCCGAGGAAAATTTTG 58.286 50.000 8.47 0.00 0.00 2.44
8122 10954 3.055891 GCCCAGAATATGTTGCACCTTTT 60.056 43.478 0.00 0.00 0.00 2.27
8189 11021 1.006998 ACCCTCTGCATTGGCCATTTA 59.993 47.619 6.09 0.00 40.13 1.40
8207 11039 7.389607 GGCCATTTAGTGACTTGTTAGTTCTTA 59.610 37.037 0.00 0.00 33.84 2.10
8237 11069 5.475564 AGTTTTTGTTAGGTTGATGCCGTAT 59.524 36.000 0.00 0.00 0.00 3.06
8238 11070 5.554822 TTTTGTTAGGTTGATGCCGTATC 57.445 39.130 0.00 0.00 36.29 2.24
8239 11071 3.897141 TGTTAGGTTGATGCCGTATCA 57.103 42.857 0.00 0.00 43.92 2.15
8254 11086 4.753610 GCCGTATCAACCTAAACCCTAATC 59.246 45.833 0.00 0.00 0.00 1.75
8256 11088 6.221659 CCGTATCAACCTAAACCCTAATCTC 58.778 44.000 0.00 0.00 0.00 2.75
8266 11098 6.260271 CCTAAACCCTAATCTCGGAACATTTC 59.740 42.308 0.00 0.00 0.00 2.17
8267 11099 4.837093 ACCCTAATCTCGGAACATTTCA 57.163 40.909 0.00 0.00 0.00 2.69
8268 11100 4.514401 ACCCTAATCTCGGAACATTTCAC 58.486 43.478 0.00 0.00 0.00 3.18
8270 11102 4.941263 CCCTAATCTCGGAACATTTCACAA 59.059 41.667 0.00 0.00 0.00 3.33
8271 11103 5.163754 CCCTAATCTCGGAACATTTCACAAC 60.164 44.000 0.00 0.00 0.00 3.32
8272 11104 5.643777 CCTAATCTCGGAACATTTCACAACT 59.356 40.000 0.00 0.00 0.00 3.16
8297 11131 0.958822 ACGTGCTTTTTAGGGCTTGG 59.041 50.000 0.00 0.00 0.00 3.61
8320 11154 5.983118 GGTAGTTTTGTGCTACTTTTGCAAT 59.017 36.000 0.00 0.00 42.41 3.56
8405 11239 3.640592 TGCACAAAACATACATGCACTG 58.359 40.909 0.00 0.00 41.18 3.66
8438 11272 7.886405 AAAATCGACCTACAACTCTAGAAAC 57.114 36.000 0.00 0.00 0.00 2.78
8439 11273 6.585695 AATCGACCTACAACTCTAGAAACA 57.414 37.500 0.00 0.00 0.00 2.83
8440 11274 6.585695 ATCGACCTACAACTCTAGAAACAA 57.414 37.500 0.00 0.00 0.00 2.83
8441 11275 6.395426 TCGACCTACAACTCTAGAAACAAA 57.605 37.500 0.00 0.00 0.00 2.83
8442 11276 6.808829 TCGACCTACAACTCTAGAAACAAAA 58.191 36.000 0.00 0.00 0.00 2.44
8443 11277 7.267128 TCGACCTACAACTCTAGAAACAAAAA 58.733 34.615 0.00 0.00 0.00 1.94
8444 11278 7.437267 TCGACCTACAACTCTAGAAACAAAAAG 59.563 37.037 0.00 0.00 0.00 2.27
8445 11279 7.307219 CGACCTACAACTCTAGAAACAAAAAGG 60.307 40.741 0.00 0.00 0.00 3.11
8446 11280 7.344134 ACCTACAACTCTAGAAACAAAAAGGT 58.656 34.615 0.00 0.00 0.00 3.50
8447 11281 7.498239 ACCTACAACTCTAGAAACAAAAAGGTC 59.502 37.037 0.00 0.00 0.00 3.85
8448 11282 7.497909 CCTACAACTCTAGAAACAAAAAGGTCA 59.502 37.037 0.00 0.00 0.00 4.02
8449 11283 7.696992 ACAACTCTAGAAACAAAAAGGTCAA 57.303 32.000 0.00 0.00 0.00 3.18
8450 11284 8.117813 ACAACTCTAGAAACAAAAAGGTCAAA 57.882 30.769 0.00 0.00 0.00 2.69
8451 11285 8.749354 ACAACTCTAGAAACAAAAAGGTCAAAT 58.251 29.630 0.00 0.00 0.00 2.32
8452 11286 9.237846 CAACTCTAGAAACAAAAAGGTCAAATC 57.762 33.333 0.00 0.00 0.00 2.17
8453 11287 8.519799 ACTCTAGAAACAAAAAGGTCAAATCA 57.480 30.769 0.00 0.00 0.00 2.57
8454 11288 9.136323 ACTCTAGAAACAAAAAGGTCAAATCAT 57.864 29.630 0.00 0.00 0.00 2.45
8455 11289 9.403110 CTCTAGAAACAAAAAGGTCAAATCATG 57.597 33.333 0.00 0.00 0.00 3.07
8456 11290 8.912988 TCTAGAAACAAAAAGGTCAAATCATGT 58.087 29.630 0.00 0.00 0.00 3.21
8457 11291 9.533253 CTAGAAACAAAAAGGTCAAATCATGTT 57.467 29.630 0.00 0.00 0.00 2.71
8486 11320 9.588096 AAATAGTACTCCCTTTGTCTCAAAATT 57.412 29.630 0.00 0.00 0.00 1.82
8487 11321 8.794335 ATAGTACTCCCTTTGTCTCAAAATTC 57.206 34.615 0.00 0.00 0.00 2.17
8488 11322 6.842676 AGTACTCCCTTTGTCTCAAAATTCT 58.157 36.000 0.00 0.00 0.00 2.40
8489 11323 7.290813 AGTACTCCCTTTGTCTCAAAATTCTT 58.709 34.615 0.00 0.00 0.00 2.52
8490 11324 6.396829 ACTCCCTTTGTCTCAAAATTCTTG 57.603 37.500 0.00 0.00 0.00 3.02
8491 11325 5.893824 ACTCCCTTTGTCTCAAAATTCTTGT 59.106 36.000 0.00 0.00 0.00 3.16
8492 11326 6.039829 ACTCCCTTTGTCTCAAAATTCTTGTC 59.960 38.462 0.00 0.00 0.00 3.18
8493 11327 6.129179 TCCCTTTGTCTCAAAATTCTTGTCT 58.871 36.000 0.00 0.00 0.00 3.41
8494 11328 6.607198 TCCCTTTGTCTCAAAATTCTTGTCTT 59.393 34.615 0.00 0.00 0.00 3.01
8495 11329 7.777910 TCCCTTTGTCTCAAAATTCTTGTCTTA 59.222 33.333 0.00 0.00 0.00 2.10
8496 11330 8.078596 CCCTTTGTCTCAAAATTCTTGTCTTAG 58.921 37.037 0.00 0.00 0.00 2.18
8497 11331 8.840321 CCTTTGTCTCAAAATTCTTGTCTTAGA 58.160 33.333 0.00 0.00 0.00 2.10
8512 11346 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
8513 11347 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
8515 11349 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
8516 11350 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
8523 11357 8.657074 TTTGTCTAAATACGGATGTATCAAGG 57.343 34.615 0.00 0.00 40.42 3.61
8524 11358 6.755206 TGTCTAAATACGGATGTATCAAGGG 58.245 40.000 0.00 0.00 40.42 3.95
8525 11359 6.551975 TGTCTAAATACGGATGTATCAAGGGA 59.448 38.462 0.00 0.00 40.42 4.20
8526 11360 6.867293 GTCTAAATACGGATGTATCAAGGGAC 59.133 42.308 0.00 0.00 40.42 4.46
8527 11361 3.936372 ATACGGATGTATCAAGGGACG 57.064 47.619 0.00 0.00 36.56 4.79
8528 11362 0.750850 ACGGATGTATCAAGGGACGG 59.249 55.000 0.00 0.00 0.00 4.79
8529 11363 1.037493 CGGATGTATCAAGGGACGGA 58.963 55.000 0.00 0.00 0.00 4.69
8530 11364 1.000163 CGGATGTATCAAGGGACGGAG 60.000 57.143 0.00 0.00 0.00 4.63
8531 11365 2.317040 GGATGTATCAAGGGACGGAGA 58.683 52.381 0.00 0.00 0.00 3.71
8532 11366 2.297597 GGATGTATCAAGGGACGGAGAG 59.702 54.545 0.00 0.00 0.00 3.20
8533 11367 2.820728 TGTATCAAGGGACGGAGAGA 57.179 50.000 0.00 0.00 0.00 3.10
8534 11368 2.656002 TGTATCAAGGGACGGAGAGAG 58.344 52.381 0.00 0.00 0.00 3.20
8535 11369 2.025226 TGTATCAAGGGACGGAGAGAGT 60.025 50.000 0.00 0.00 0.00 3.24
8536 11370 3.201487 TGTATCAAGGGACGGAGAGAGTA 59.799 47.826 0.00 0.00 0.00 2.59
8537 11371 3.603965 ATCAAGGGACGGAGAGAGTAT 57.396 47.619 0.00 0.00 0.00 2.12
8538 11372 3.383698 TCAAGGGACGGAGAGAGTATT 57.616 47.619 0.00 0.00 0.00 1.89
8539 11373 4.515028 TCAAGGGACGGAGAGAGTATTA 57.485 45.455 0.00 0.00 0.00 0.98
8540 11374 4.205587 TCAAGGGACGGAGAGAGTATTAC 58.794 47.826 0.00 0.00 0.00 1.89
8541 11375 4.079901 TCAAGGGACGGAGAGAGTATTACT 60.080 45.833 0.00 0.00 0.00 2.24
8542 11376 4.523168 AGGGACGGAGAGAGTATTACTT 57.477 45.455 0.00 0.00 0.00 2.24
8543 11377 4.869451 AGGGACGGAGAGAGTATTACTTT 58.131 43.478 0.00 0.00 0.00 2.66
8544 11378 4.645588 AGGGACGGAGAGAGTATTACTTTG 59.354 45.833 0.00 0.00 0.00 2.77
8545 11379 4.401837 GGGACGGAGAGAGTATTACTTTGT 59.598 45.833 0.00 0.00 0.00 2.83
8546 11380 5.591877 GGGACGGAGAGAGTATTACTTTGTA 59.408 44.000 0.00 0.00 0.00 2.41
8547 11381 6.096001 GGGACGGAGAGAGTATTACTTTGTAA 59.904 42.308 0.00 0.00 0.00 2.41
8548 11382 7.363268 GGGACGGAGAGAGTATTACTTTGTAAA 60.363 40.741 0.00 0.00 0.00 2.01
8549 11383 7.701501 GGACGGAGAGAGTATTACTTTGTAAAG 59.298 40.741 0.00 2.94 41.73 1.85
8550 11384 8.345724 ACGGAGAGAGTATTACTTTGTAAAGA 57.654 34.615 11.07 0.00 39.31 2.52
8551 11385 8.800332 ACGGAGAGAGTATTACTTTGTAAAGAA 58.200 33.333 11.07 2.48 39.31 2.52
8552 11386 9.635520 CGGAGAGAGTATTACTTTGTAAAGAAA 57.364 33.333 11.07 0.00 39.31 2.52
8562 11396 9.988350 ATTACTTTGTAAAGAAATGTATGAGCG 57.012 29.630 11.07 0.00 39.31 5.03
8563 11397 7.435068 ACTTTGTAAAGAAATGTATGAGCGT 57.565 32.000 11.07 0.00 39.31 5.07
8564 11398 7.871853 ACTTTGTAAAGAAATGTATGAGCGTT 58.128 30.769 11.07 0.00 39.31 4.84
8565 11399 8.349983 ACTTTGTAAAGAAATGTATGAGCGTTT 58.650 29.630 11.07 0.00 39.31 3.60
8566 11400 9.820229 CTTTGTAAAGAAATGTATGAGCGTTTA 57.180 29.630 0.00 0.00 38.28 2.01
8567 11401 9.820229 TTTGTAAAGAAATGTATGAGCGTTTAG 57.180 29.630 0.00 0.00 0.00 1.85
8568 11402 8.766000 TGTAAAGAAATGTATGAGCGTTTAGA 57.234 30.769 0.00 0.00 0.00 2.10
8569 11403 9.378551 TGTAAAGAAATGTATGAGCGTTTAGAT 57.621 29.630 0.00 0.00 0.00 1.98
8570 11404 9.851043 GTAAAGAAATGTATGAGCGTTTAGATC 57.149 33.333 0.00 0.00 35.45 2.75
8623 11457 9.720769 TTTTACAGAGGGAGTACTTTTAGATTG 57.279 33.333 0.00 0.00 0.00 2.67
8624 11458 6.301169 ACAGAGGGAGTACTTTTAGATTGG 57.699 41.667 0.00 0.00 0.00 3.16
8625 11459 6.023603 ACAGAGGGAGTACTTTTAGATTGGA 58.976 40.000 0.00 0.00 0.00 3.53
8626 11460 6.070710 ACAGAGGGAGTACTTTTAGATTGGAC 60.071 42.308 0.00 0.00 0.00 4.02
8627 11461 5.425862 AGAGGGAGTACTTTTAGATTGGACC 59.574 44.000 0.00 0.00 0.00 4.46
8628 11462 5.098663 AGGGAGTACTTTTAGATTGGACCA 58.901 41.667 0.00 0.00 0.00 4.02
8629 11463 5.731678 AGGGAGTACTTTTAGATTGGACCAT 59.268 40.000 0.00 0.00 0.00 3.55
8630 11464 6.906901 AGGGAGTACTTTTAGATTGGACCATA 59.093 38.462 0.00 0.00 0.00 2.74
8631 11465 7.404980 AGGGAGTACTTTTAGATTGGACCATAA 59.595 37.037 0.00 0.00 0.00 1.90
8632 11466 8.050930 GGGAGTACTTTTAGATTGGACCATAAA 58.949 37.037 0.00 0.00 0.00 1.40
8633 11467 9.628500 GGAGTACTTTTAGATTGGACCATAAAT 57.372 33.333 0.00 0.00 0.00 1.40
8639 11473 9.586435 CTTTTAGATTGGACCATAAATTTGACC 57.414 33.333 0.00 0.00 0.00 4.02
8640 11474 7.654022 TTAGATTGGACCATAAATTTGACCC 57.346 36.000 0.00 0.00 0.00 4.46
8641 11475 5.588845 AGATTGGACCATAAATTTGACCCA 58.411 37.500 0.00 0.00 0.00 4.51
8642 11476 6.204555 AGATTGGACCATAAATTTGACCCAT 58.795 36.000 0.00 0.00 0.00 4.00
8643 11477 6.673537 AGATTGGACCATAAATTTGACCCATT 59.326 34.615 0.00 0.00 0.00 3.16
8644 11478 7.843760 AGATTGGACCATAAATTTGACCCATTA 59.156 33.333 0.00 0.00 0.00 1.90
8645 11479 7.798710 TTGGACCATAAATTTGACCCATTAA 57.201 32.000 0.00 0.00 0.00 1.40
8646 11480 7.176589 TGGACCATAAATTTGACCCATTAAC 57.823 36.000 0.00 0.00 0.00 2.01
8647 11481 6.726299 TGGACCATAAATTTGACCCATTAACA 59.274 34.615 0.00 0.00 0.00 2.41
8648 11482 7.039270 GGACCATAAATTTGACCCATTAACAC 58.961 38.462 0.00 0.00 0.00 3.32
8649 11483 6.626302 ACCATAAATTTGACCCATTAACACG 58.374 36.000 0.00 0.00 0.00 4.49
8650 11484 6.209788 ACCATAAATTTGACCCATTAACACGT 59.790 34.615 0.00 0.00 0.00 4.49
8651 11485 7.093992 CCATAAATTTGACCCATTAACACGTT 58.906 34.615 0.00 0.00 0.00 3.99
8652 11486 7.274686 CCATAAATTTGACCCATTAACACGTTC 59.725 37.037 0.00 0.00 0.00 3.95
8653 11487 5.776173 AATTTGACCCATTAACACGTTCA 57.224 34.783 0.00 0.00 0.00 3.18
8654 11488 4.555348 TTTGACCCATTAACACGTTCAC 57.445 40.909 0.00 0.00 0.00 3.18
8655 11489 3.478857 TGACCCATTAACACGTTCACT 57.521 42.857 0.00 0.00 0.00 3.41
8656 11490 3.135225 TGACCCATTAACACGTTCACTG 58.865 45.455 0.00 0.00 0.00 3.66
8657 11491 3.135994 GACCCATTAACACGTTCACTGT 58.864 45.455 0.00 0.00 0.00 3.55
8658 11492 3.547746 ACCCATTAACACGTTCACTGTT 58.452 40.909 0.00 0.00 35.92 3.16
8659 11493 3.314080 ACCCATTAACACGTTCACTGTTG 59.686 43.478 0.00 0.00 33.79 3.33
8660 11494 3.562141 CCCATTAACACGTTCACTGTTGA 59.438 43.478 0.00 0.00 33.79 3.18
8661 11495 4.215399 CCCATTAACACGTTCACTGTTGAT 59.785 41.667 0.00 0.00 33.79 2.57
8662 11496 5.278266 CCCATTAACACGTTCACTGTTGATT 60.278 40.000 0.00 0.00 33.79 2.57
8663 11497 6.205784 CCATTAACACGTTCACTGTTGATTT 58.794 36.000 0.00 0.00 33.79 2.17
8664 11498 6.695278 CCATTAACACGTTCACTGTTGATTTT 59.305 34.615 0.00 0.00 33.79 1.82
8665 11499 7.221838 CCATTAACACGTTCACTGTTGATTTTT 59.778 33.333 0.00 0.00 33.79 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.759059 AGCATCTCCAATAGATTGTCCAAA 58.241 37.500 1.78 0.00 42.62 3.28
1 2 5.371526 GAGCATCTCCAATAGATTGTCCAA 58.628 41.667 1.78 0.00 42.62 3.53
2 3 4.965814 GAGCATCTCCAATAGATTGTCCA 58.034 43.478 1.78 0.00 42.62 4.02
22 23 7.984050 TGATCAATTTAGAACAGGCTCTTAGAG 59.016 37.037 4.63 4.63 0.00 2.43
23 24 7.851228 TGATCAATTTAGAACAGGCTCTTAGA 58.149 34.615 0.00 0.00 0.00 2.10
24 25 8.394121 GTTGATCAATTTAGAACAGGCTCTTAG 58.606 37.037 12.12 0.00 0.00 2.18
25 26 7.882791 TGTTGATCAATTTAGAACAGGCTCTTA 59.117 33.333 12.12 0.00 0.00 2.10
32 33 6.149973 TGGCTCTGTTGATCAATTTAGAACAG 59.850 38.462 12.12 12.69 43.16 3.16
95 96 2.986479 CAACAACGATTGGCCTTTTAGC 59.014 45.455 3.32 0.00 34.12 3.09
96 97 4.226761 GTCAACAACGATTGGCCTTTTAG 58.773 43.478 3.32 0.00 34.12 1.85
116 118 3.665675 CTAGGGTGGCTGGTGCGTC 62.666 68.421 0.00 0.00 40.82 5.19
190 192 0.321564 TTGCGGGTGTCCAAGAGATG 60.322 55.000 0.00 0.00 0.00 2.90
191 193 0.620556 ATTGCGGGTGTCCAAGAGAT 59.379 50.000 0.00 0.00 0.00 2.75
192 194 1.207089 CTATTGCGGGTGTCCAAGAGA 59.793 52.381 0.00 0.00 33.38 3.10
193 195 1.066143 ACTATTGCGGGTGTCCAAGAG 60.066 52.381 0.00 0.00 36.60 2.85
224 226 5.062809 GCGGTTCTATCTTGTTCTTCAGAAG 59.937 44.000 3.45 3.45 34.27 2.85
225 227 4.929808 GCGGTTCTATCTTGTTCTTCAGAA 59.070 41.667 0.00 0.00 0.00 3.02
226 228 4.495422 GCGGTTCTATCTTGTTCTTCAGA 58.505 43.478 0.00 0.00 0.00 3.27
227 229 3.304559 CGCGGTTCTATCTTGTTCTTCAG 59.695 47.826 0.00 0.00 0.00 3.02
279 281 1.434188 TTGGAGAGTTGGCTTGGAGA 58.566 50.000 0.00 0.00 0.00 3.71
314 316 2.282251 TCGGTGTCGCTCCTCTGT 60.282 61.111 0.00 0.00 36.13 3.41
340 342 1.398041 TCGGTTACTGATCGGTGTACG 59.602 52.381 17.78 16.70 46.11 3.67
341 343 3.492421 TTCGGTTACTGATCGGTGTAC 57.508 47.619 17.78 14.03 0.00 2.90
353 355 3.640029 TCCCCATGTCTAGATTCGGTTAC 59.360 47.826 0.00 0.00 0.00 2.50
355 357 2.434702 GTCCCCATGTCTAGATTCGGTT 59.565 50.000 0.00 0.00 0.00 4.44
358 360 1.681793 ACGTCCCCATGTCTAGATTCG 59.318 52.381 0.00 0.00 0.00 3.34
456 459 7.630924 ACGTTTTTGACATTAAACAGAGAGAG 58.369 34.615 11.81 0.77 34.68 3.20
458 461 8.614994 AAACGTTTTTGACATTAAACAGAGAG 57.385 30.769 7.96 1.75 34.68 3.20
470 473 9.640963 CCCCATAATATAAAAACGTTTTTGACA 57.359 29.630 36.92 25.32 40.33 3.58
471 474 9.642327 ACCCCATAATATAAAAACGTTTTTGAC 57.358 29.630 36.92 0.00 40.33 3.18
472 475 9.640963 CACCCCATAATATAAAAACGTTTTTGA 57.359 29.630 36.92 27.73 40.33 2.69
473 476 9.640963 TCACCCCATAATATAAAAACGTTTTTG 57.359 29.630 36.92 24.07 40.33 2.44
475 478 9.863845 CTTCACCCCATAATATAAAAACGTTTT 57.136 29.630 20.26 20.26 0.00 2.43
476 479 8.471609 CCTTCACCCCATAATATAAAAACGTTT 58.528 33.333 7.96 7.96 0.00 3.60
477 480 7.068962 CCCTTCACCCCATAATATAAAAACGTT 59.931 37.037 0.00 0.00 0.00 3.99
478 481 6.548251 CCCTTCACCCCATAATATAAAAACGT 59.452 38.462 0.00 0.00 0.00 3.99
479 482 6.773685 TCCCTTCACCCCATAATATAAAAACG 59.226 38.462 0.00 0.00 0.00 3.60
480 483 8.721133 ATCCCTTCACCCCATAATATAAAAAC 57.279 34.615 0.00 0.00 0.00 2.43
481 484 9.736819 AAATCCCTTCACCCCATAATATAAAAA 57.263 29.630 0.00 0.00 0.00 1.94
482 485 9.736819 AAAATCCCTTCACCCCATAATATAAAA 57.263 29.630 0.00 0.00 0.00 1.52
483 486 9.736819 AAAAATCCCTTCACCCCATAATATAAA 57.263 29.630 0.00 0.00 0.00 1.40
517 520 7.781693 TCCGGACTACTAGGTTATTTTAGATGT 59.218 37.037 0.00 0.00 0.00 3.06
526 529 3.117587 ACTGCTCCGGACTACTAGGTTAT 60.118 47.826 0.00 0.00 0.00 1.89
536 539 1.341089 TGTGATAGACTGCTCCGGACT 60.341 52.381 0.00 0.00 0.00 3.85
555 558 8.420222 CAGCCTCTATATAGGATTTGGATAGTG 58.580 40.741 9.89 0.00 39.15 2.74
1110 1113 3.379452 ACATCTAAAGTAGAGGCAGCCT 58.621 45.455 16.12 16.12 40.05 4.58
1242 1251 8.758633 ACTTATAACTACACAAGCTACACAAG 57.241 34.615 0.00 0.00 0.00 3.16
1243 1252 8.984764 CAACTTATAACTACACAAGCTACACAA 58.015 33.333 0.00 0.00 0.00 3.33
1244 1253 7.117236 GCAACTTATAACTACACAAGCTACACA 59.883 37.037 0.00 0.00 0.00 3.72
1245 1254 7.331193 AGCAACTTATAACTACACAAGCTACAC 59.669 37.037 0.00 0.00 0.00 2.90
1246 1255 7.383687 AGCAACTTATAACTACACAAGCTACA 58.616 34.615 0.00 0.00 0.00 2.74
1247 1256 7.760340 AGAGCAACTTATAACTACACAAGCTAC 59.240 37.037 0.00 0.00 0.00 3.58
1248 1257 7.837863 AGAGCAACTTATAACTACACAAGCTA 58.162 34.615 0.00 0.00 0.00 3.32
1249 1258 6.702329 AGAGCAACTTATAACTACACAAGCT 58.298 36.000 0.00 0.00 0.00 3.74
1742 1760 1.734163 AGTATTTTGGAACGGAGGCG 58.266 50.000 0.00 0.00 0.00 5.52
2015 2108 8.812329 TGCACAACATTATGTACAAAGAAAAAC 58.188 29.630 0.00 0.00 30.84 2.43
2025 2118 4.985413 ACTGCATGCACAACATTATGTAC 58.015 39.130 18.46 0.00 36.64 2.90
2136 2232 1.203137 CGGGAGAGGGGGTCATATGTA 60.203 57.143 1.90 0.00 0.00 2.29
2183 2279 2.482142 GCCTAGGGAACTCATCTCAACG 60.482 54.545 11.72 0.00 43.67 4.10
2311 2444 7.402862 ACCAGCCACAAAACTATAGAACTAAT 58.597 34.615 6.78 0.00 0.00 1.73
2342 2475 9.528018 GGAAACAAAATAATGAAAACAGAGTCA 57.472 29.630 0.00 0.00 0.00 3.41
2533 3229 1.218230 GCAGCTATGCGGCTCTACAC 61.218 60.000 7.37 0.00 45.50 2.90
2663 3363 2.735772 CGACCCCCATCCCAGACAG 61.736 68.421 0.00 0.00 0.00 3.51
2664 3364 2.687200 CGACCCCCATCCCAGACA 60.687 66.667 0.00 0.00 0.00 3.41
2982 4733 8.810652 TTAATGCAACCTGACAGATTAAAAAC 57.189 30.769 3.32 0.00 0.00 2.43
2988 4739 6.655078 AACTTTAATGCAACCTGACAGATT 57.345 33.333 3.32 0.00 0.00 2.40
3155 4909 6.150474 GCTGCAAGAGGTAGGTTTAACATAAA 59.850 38.462 0.00 0.00 34.07 1.40
3290 5044 6.287525 ACAATTGAACTGTTTTGGGTAATGG 58.712 36.000 13.59 0.00 0.00 3.16
3298 5052 7.810766 ACACAAGTACAATTGAACTGTTTTG 57.189 32.000 13.59 8.74 34.20 2.44
3500 5254 0.251297 TCCAAACATCCCACAGGCTG 60.251 55.000 14.16 14.16 35.28 4.85
3716 5470 1.767759 GCACTATGCAAGACCCCATT 58.232 50.000 0.00 0.00 44.26 3.16
3768 5523 0.830648 ATCACCGTGGACATACCTGG 59.169 55.000 0.00 0.00 39.57 4.45
4240 5995 9.418045 CAACACCAAAATAAATTAACCTGGTAG 57.582 33.333 0.00 2.89 33.99 3.18
4448 6203 2.570415 TGGCGTAATTGGGTTCTTCA 57.430 45.000 0.00 0.00 0.00 3.02
4584 6339 8.792830 TGGATAAGTCCTTAAAGTTCATGAAG 57.207 34.615 8.80 0.00 45.32 3.02
4653 6408 9.865321 CCAATCTACAAAATCAACAAGATCAAT 57.135 29.630 0.00 0.00 35.39 2.57
5009 7019 8.330302 CAATAAAGTATTAGGCAGCATTTTTGC 58.670 33.333 0.00 0.00 40.80 3.68
5229 7242 8.506168 AGTAACACAGTGAAAAATTCTCTTGA 57.494 30.769 7.81 0.00 31.64 3.02
5528 7544 4.012374 ACGAATGGCAAACAAGATCTCAT 58.988 39.130 0.00 0.00 0.00 2.90
5757 7773 4.940046 AGTTTTGGTAGTCAGCATCAGATG 59.060 41.667 5.98 5.98 30.88 2.90
5777 7793 9.793259 TGTTGGAGTAGATTTTAAAGATCAGTT 57.207 29.630 0.00 0.00 0.00 3.16
6493 9301 0.245539 TTCTCCCGTGACATTCCGTC 59.754 55.000 0.00 0.00 45.61 4.79
6676 9486 5.449999 GGAAACACTAAGTGGTTGTTTGGAG 60.450 44.000 5.61 0.00 44.00 3.86
6755 9565 4.318332 CTGTGACACTTTCTGAATGCCTA 58.682 43.478 7.20 0.00 0.00 3.93
6843 9657 5.731678 AGTTCTTGTCCCTAAATACCAGGAT 59.268 40.000 0.00 0.00 34.91 3.24
6856 9670 7.159372 TGATACTTAAAGTCAGTTCTTGTCCC 58.841 38.462 0.00 0.00 0.00 4.46
6880 9694 2.609459 GCATACGTTGTTCCTGGAGATG 59.391 50.000 0.00 0.00 0.00 2.90
7442 10257 0.543410 TAGGAACGGAGGGAGTGCAA 60.543 55.000 0.00 0.00 0.00 4.08
7445 10260 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
7484 10299 3.750130 GCTCTGCATGTAGTCCATATTGG 59.250 47.826 10.80 0.00 39.43 3.16
7523 10338 7.036220 GCGGGCTACATATGGATGTATATATC 58.964 42.308 7.80 0.97 45.42 1.63
7533 10348 1.696884 TCAATGCGGGCTACATATGGA 59.303 47.619 7.80 0.00 0.00 3.41
7544 10359 6.092533 AGCATTTTTAAAGATTTCAATGCGGG 59.907 34.615 19.61 0.00 36.54 6.13
7598 10418 9.573133 CTGGTGAATACATTTCTTATTTGGAAC 57.427 33.333 0.00 0.00 0.00 3.62
7822 10643 2.023673 CTGTCACAGGTTTGCCTTTCA 58.976 47.619 0.00 0.00 44.18 2.69
8126 10958 0.396974 GGGGAAGGTATTGCATGGCA 60.397 55.000 0.00 0.00 36.47 4.92
8127 10959 0.106015 AGGGGAAGGTATTGCATGGC 60.106 55.000 0.00 0.00 0.00 4.40
8128 10960 2.459555 AAGGGGAAGGTATTGCATGG 57.540 50.000 0.00 0.00 0.00 3.66
8129 10961 3.885297 CAGTAAGGGGAAGGTATTGCATG 59.115 47.826 0.00 0.00 0.00 4.06
8130 10962 3.688414 GCAGTAAGGGGAAGGTATTGCAT 60.688 47.826 0.00 0.00 32.48 3.96
8131 10963 2.356741 GCAGTAAGGGGAAGGTATTGCA 60.357 50.000 0.00 0.00 32.48 4.08
8132 10964 2.298610 GCAGTAAGGGGAAGGTATTGC 58.701 52.381 0.00 0.00 0.00 3.56
8143 10975 2.359900 GAAGTCACATGGCAGTAAGGG 58.640 52.381 0.00 0.00 0.00 3.95
8189 11021 9.245481 ACTAGCTATAAGAACTAACAAGTCACT 57.755 33.333 0.00 0.00 0.00 3.41
8207 11039 7.148069 GGCATCAACCTAACAAAAACTAGCTAT 60.148 37.037 0.00 0.00 0.00 2.97
8237 11069 4.355549 TCCGAGATTAGGGTTTAGGTTGA 58.644 43.478 0.00 0.00 0.00 3.18
8238 11070 4.748277 TCCGAGATTAGGGTTTAGGTTG 57.252 45.455 0.00 0.00 0.00 3.77
8239 11071 4.533311 TGTTCCGAGATTAGGGTTTAGGTT 59.467 41.667 0.00 0.00 0.00 3.50
8240 11072 4.098894 TGTTCCGAGATTAGGGTTTAGGT 58.901 43.478 0.00 0.00 0.00 3.08
8241 11073 4.748277 TGTTCCGAGATTAGGGTTTAGG 57.252 45.455 0.00 0.00 0.00 2.69
8242 11074 6.821665 TGAAATGTTCCGAGATTAGGGTTTAG 59.178 38.462 0.00 0.00 0.00 1.85
8243 11075 6.596497 GTGAAATGTTCCGAGATTAGGGTTTA 59.404 38.462 0.00 0.00 0.00 2.01
8254 11086 4.739716 CCAAAAGTTGTGAAATGTTCCGAG 59.260 41.667 0.00 0.00 0.00 4.63
8256 11088 4.502645 GTCCAAAAGTTGTGAAATGTTCCG 59.497 41.667 0.00 0.00 0.00 4.30
8266 11098 2.559998 AAGCACGTCCAAAAGTTGTG 57.440 45.000 0.00 0.00 0.00 3.33
8267 11099 3.586100 AAAAGCACGTCCAAAAGTTGT 57.414 38.095 0.00 0.00 0.00 3.32
8268 11100 4.502645 CCTAAAAAGCACGTCCAAAAGTTG 59.497 41.667 0.00 0.00 0.00 3.16
8270 11102 3.067601 CCCTAAAAAGCACGTCCAAAAGT 59.932 43.478 0.00 0.00 0.00 2.66
8271 11103 3.638484 CCCTAAAAAGCACGTCCAAAAG 58.362 45.455 0.00 0.00 0.00 2.27
8272 11104 2.223852 GCCCTAAAAAGCACGTCCAAAA 60.224 45.455 0.00 0.00 0.00 2.44
8297 11131 7.010091 ACAATTGCAAAAGTAGCACAAAACTAC 59.990 33.333 1.71 0.00 42.54 2.73
8320 11154 8.148351 AGTTGTAGAGTACATTTTAGCTGACAA 58.852 33.333 0.00 0.00 38.68 3.18
8370 11204 7.959689 TGTTTTGTGCACATGCTAAATTATT 57.040 28.000 22.39 0.00 42.66 1.40
8371 11205 9.086336 GTATGTTTTGTGCACATGCTAAATTAT 57.914 29.630 22.39 16.66 42.66 1.28
8384 11218 3.067883 ACAGTGCATGTATGTTTTGTGCA 59.932 39.130 0.00 0.00 41.60 4.57
8417 11251 6.585695 TTGTTTCTAGAGTTGTAGGTCGAT 57.414 37.500 0.00 0.00 0.00 3.59
8418 11252 6.395426 TTTGTTTCTAGAGTTGTAGGTCGA 57.605 37.500 0.00 0.00 0.00 4.20
8419 11253 7.307219 CCTTTTTGTTTCTAGAGTTGTAGGTCG 60.307 40.741 0.00 0.00 0.00 4.79
8420 11254 7.498239 ACCTTTTTGTTTCTAGAGTTGTAGGTC 59.502 37.037 0.00 0.00 0.00 3.85
8421 11255 7.344134 ACCTTTTTGTTTCTAGAGTTGTAGGT 58.656 34.615 0.00 0.00 0.00 3.08
8422 11256 7.497909 TGACCTTTTTGTTTCTAGAGTTGTAGG 59.502 37.037 0.00 0.00 0.00 3.18
8423 11257 8.433421 TGACCTTTTTGTTTCTAGAGTTGTAG 57.567 34.615 0.00 0.00 0.00 2.74
8424 11258 8.795842 TTGACCTTTTTGTTTCTAGAGTTGTA 57.204 30.769 0.00 0.00 0.00 2.41
8425 11259 7.696992 TTGACCTTTTTGTTTCTAGAGTTGT 57.303 32.000 0.00 0.00 0.00 3.32
8426 11260 9.237846 GATTTGACCTTTTTGTTTCTAGAGTTG 57.762 33.333 0.00 0.00 0.00 3.16
8427 11261 8.966868 TGATTTGACCTTTTTGTTTCTAGAGTT 58.033 29.630 0.00 0.00 0.00 3.01
8428 11262 8.519799 TGATTTGACCTTTTTGTTTCTAGAGT 57.480 30.769 0.00 0.00 0.00 3.24
8429 11263 9.403110 CATGATTTGACCTTTTTGTTTCTAGAG 57.597 33.333 0.00 0.00 0.00 2.43
8430 11264 8.912988 ACATGATTTGACCTTTTTGTTTCTAGA 58.087 29.630 0.00 0.00 0.00 2.43
8431 11265 9.533253 AACATGATTTGACCTTTTTGTTTCTAG 57.467 29.630 0.00 0.00 0.00 2.43
8460 11294 9.588096 AATTTTGAGACAAAGGGAGTACTATTT 57.412 29.630 0.00 0.00 0.00 1.40
8461 11295 9.232473 GAATTTTGAGACAAAGGGAGTACTATT 57.768 33.333 0.00 0.00 0.00 1.73
8462 11296 8.606830 AGAATTTTGAGACAAAGGGAGTACTAT 58.393 33.333 0.00 0.00 0.00 2.12
8463 11297 7.974504 AGAATTTTGAGACAAAGGGAGTACTA 58.025 34.615 0.00 0.00 0.00 1.82
8464 11298 6.842676 AGAATTTTGAGACAAAGGGAGTACT 58.157 36.000 0.00 0.00 0.00 2.73
8465 11299 7.013369 ACAAGAATTTTGAGACAAAGGGAGTAC 59.987 37.037 7.18 0.00 0.00 2.73
8466 11300 7.060421 ACAAGAATTTTGAGACAAAGGGAGTA 58.940 34.615 7.18 0.00 0.00 2.59
8467 11301 5.893824 ACAAGAATTTTGAGACAAAGGGAGT 59.106 36.000 7.18 0.00 0.00 3.85
8468 11302 6.264067 AGACAAGAATTTTGAGACAAAGGGAG 59.736 38.462 7.18 0.00 0.00 4.30
8469 11303 6.129179 AGACAAGAATTTTGAGACAAAGGGA 58.871 36.000 7.18 0.00 0.00 4.20
8470 11304 6.396829 AGACAAGAATTTTGAGACAAAGGG 57.603 37.500 7.18 0.00 0.00 3.95
8471 11305 8.840321 TCTAAGACAAGAATTTTGAGACAAAGG 58.160 33.333 7.18 0.00 0.00 3.11
8486 11320 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
8487 11321 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
8489 11323 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
8490 11324 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
8497 11331 9.273016 CCTTGATACATCCGTATTTAGACAAAT 57.727 33.333 0.00 0.00 38.48 2.32
8498 11332 7.713507 CCCTTGATACATCCGTATTTAGACAAA 59.286 37.037 0.00 0.00 38.48 2.83
8499 11333 7.070198 TCCCTTGATACATCCGTATTTAGACAA 59.930 37.037 0.00 0.00 38.48 3.18
8500 11334 6.551975 TCCCTTGATACATCCGTATTTAGACA 59.448 38.462 0.00 0.00 38.48 3.41
8501 11335 6.867293 GTCCCTTGATACATCCGTATTTAGAC 59.133 42.308 0.00 0.00 38.48 2.59
8502 11336 6.294342 CGTCCCTTGATACATCCGTATTTAGA 60.294 42.308 0.00 0.00 38.48 2.10
8503 11337 5.862323 CGTCCCTTGATACATCCGTATTTAG 59.138 44.000 0.00 0.00 38.48 1.85
8504 11338 5.279106 CCGTCCCTTGATACATCCGTATTTA 60.279 44.000 0.00 0.00 38.48 1.40
8505 11339 4.502604 CCGTCCCTTGATACATCCGTATTT 60.503 45.833 0.00 0.00 38.48 1.40
8506 11340 3.006537 CCGTCCCTTGATACATCCGTATT 59.993 47.826 0.00 0.00 38.48 1.89
8507 11341 2.561419 CCGTCCCTTGATACATCCGTAT 59.439 50.000 0.00 0.00 41.16 3.06
8508 11342 1.958579 CCGTCCCTTGATACATCCGTA 59.041 52.381 0.00 0.00 0.00 4.02
8509 11343 0.750850 CCGTCCCTTGATACATCCGT 59.249 55.000 0.00 0.00 0.00 4.69
8510 11344 1.000163 CTCCGTCCCTTGATACATCCG 60.000 57.143 0.00 0.00 0.00 4.18
8511 11345 2.297597 CTCTCCGTCCCTTGATACATCC 59.702 54.545 0.00 0.00 0.00 3.51
8512 11346 3.223435 TCTCTCCGTCCCTTGATACATC 58.777 50.000 0.00 0.00 0.00 3.06
8513 11347 3.226777 CTCTCTCCGTCCCTTGATACAT 58.773 50.000 0.00 0.00 0.00 2.29
8514 11348 2.025226 ACTCTCTCCGTCCCTTGATACA 60.025 50.000 0.00 0.00 0.00 2.29
8515 11349 2.657143 ACTCTCTCCGTCCCTTGATAC 58.343 52.381 0.00 0.00 0.00 2.24
8516 11350 4.726035 ATACTCTCTCCGTCCCTTGATA 57.274 45.455 0.00 0.00 0.00 2.15
8517 11351 3.603965 ATACTCTCTCCGTCCCTTGAT 57.396 47.619 0.00 0.00 0.00 2.57
8518 11352 3.383698 AATACTCTCTCCGTCCCTTGA 57.616 47.619 0.00 0.00 0.00 3.02
8519 11353 4.208746 AGTAATACTCTCTCCGTCCCTTG 58.791 47.826 0.00 0.00 0.00 3.61
8520 11354 4.523168 AGTAATACTCTCTCCGTCCCTT 57.477 45.455 0.00 0.00 0.00 3.95
8521 11355 4.523168 AAGTAATACTCTCTCCGTCCCT 57.477 45.455 0.00 0.00 0.00 4.20
8522 11356 4.401837 ACAAAGTAATACTCTCTCCGTCCC 59.598 45.833 0.00 0.00 0.00 4.46
8523 11357 5.579564 ACAAAGTAATACTCTCTCCGTCC 57.420 43.478 0.00 0.00 0.00 4.79
8524 11358 8.457261 TCTTTACAAAGTAATACTCTCTCCGTC 58.543 37.037 0.00 0.00 37.31 4.79
8525 11359 8.345724 TCTTTACAAAGTAATACTCTCTCCGT 57.654 34.615 0.00 0.00 37.31 4.69
8526 11360 9.635520 TTTCTTTACAAAGTAATACTCTCTCCG 57.364 33.333 0.00 0.00 37.31 4.63
8536 11370 9.988350 CGCTCATACATTTCTTTACAAAGTAAT 57.012 29.630 1.86 1.90 36.74 1.89
8537 11371 8.995220 ACGCTCATACATTTCTTTACAAAGTAA 58.005 29.630 1.86 0.00 37.31 2.24
8538 11372 8.542497 ACGCTCATACATTTCTTTACAAAGTA 57.458 30.769 1.86 0.00 37.31 2.24
8539 11373 7.435068 ACGCTCATACATTTCTTTACAAAGT 57.565 32.000 1.86 0.00 37.31 2.66
8540 11374 8.728088 AAACGCTCATACATTTCTTTACAAAG 57.272 30.769 0.00 0.00 37.36 2.77
8541 11375 9.820229 CTAAACGCTCATACATTTCTTTACAAA 57.180 29.630 0.00 0.00 0.00 2.83
8542 11376 9.210329 TCTAAACGCTCATACATTTCTTTACAA 57.790 29.630 0.00 0.00 0.00 2.41
8543 11377 8.766000 TCTAAACGCTCATACATTTCTTTACA 57.234 30.769 0.00 0.00 0.00 2.41
8544 11378 9.851043 GATCTAAACGCTCATACATTTCTTTAC 57.149 33.333 0.00 0.00 0.00 2.01
8545 11379 9.594478 TGATCTAAACGCTCATACATTTCTTTA 57.406 29.630 0.00 0.00 0.00 1.85
8546 11380 8.391106 GTGATCTAAACGCTCATACATTTCTTT 58.609 33.333 0.00 0.00 0.00 2.52
8547 11381 7.766278 AGTGATCTAAACGCTCATACATTTCTT 59.234 33.333 0.00 0.00 0.00 2.52
8548 11382 7.268586 AGTGATCTAAACGCTCATACATTTCT 58.731 34.615 0.00 0.00 0.00 2.52
8549 11383 7.470289 AGTGATCTAAACGCTCATACATTTC 57.530 36.000 0.00 0.00 0.00 2.17
8550 11384 8.942338 TTAGTGATCTAAACGCTCATACATTT 57.058 30.769 0.00 0.00 33.79 2.32
8551 11385 8.942338 TTTAGTGATCTAAACGCTCATACATT 57.058 30.769 0.00 0.00 40.05 2.71
8552 11386 8.942338 TTTTAGTGATCTAAACGCTCATACAT 57.058 30.769 0.00 0.00 43.20 2.29
8553 11387 8.942338 ATTTTAGTGATCTAAACGCTCATACA 57.058 30.769 0.00 0.00 43.20 2.29
8597 11431 9.720769 CAATCTAAAAGTACTCCCTCTGTAAAA 57.279 33.333 0.00 0.00 0.00 1.52
8598 11432 8.319146 CCAATCTAAAAGTACTCCCTCTGTAAA 58.681 37.037 0.00 0.00 0.00 2.01
8599 11433 7.676893 TCCAATCTAAAAGTACTCCCTCTGTAA 59.323 37.037 0.00 0.00 0.00 2.41
8600 11434 7.123847 GTCCAATCTAAAAGTACTCCCTCTGTA 59.876 40.741 0.00 0.00 0.00 2.74
8601 11435 6.023603 TCCAATCTAAAAGTACTCCCTCTGT 58.976 40.000 0.00 0.00 0.00 3.41
8602 11436 6.342111 GTCCAATCTAAAAGTACTCCCTCTG 58.658 44.000 0.00 0.00 0.00 3.35
8603 11437 5.425862 GGTCCAATCTAAAAGTACTCCCTCT 59.574 44.000 0.00 0.00 0.00 3.69
8604 11438 5.189145 TGGTCCAATCTAAAAGTACTCCCTC 59.811 44.000 0.00 0.00 0.00 4.30
8605 11439 5.098663 TGGTCCAATCTAAAAGTACTCCCT 58.901 41.667 0.00 0.00 0.00 4.20
8606 11440 5.431179 TGGTCCAATCTAAAAGTACTCCC 57.569 43.478 0.00 0.00 0.00 4.30
8607 11441 9.628500 ATTTATGGTCCAATCTAAAAGTACTCC 57.372 33.333 0.00 0.00 0.00 3.85
8613 11447 9.586435 GGTCAAATTTATGGTCCAATCTAAAAG 57.414 33.333 0.00 0.00 0.00 2.27
8614 11448 8.536175 GGGTCAAATTTATGGTCCAATCTAAAA 58.464 33.333 0.00 0.00 0.00 1.52
8615 11449 7.676043 TGGGTCAAATTTATGGTCCAATCTAAA 59.324 33.333 0.00 0.00 0.00 1.85
8616 11450 7.185565 TGGGTCAAATTTATGGTCCAATCTAA 58.814 34.615 0.00 0.00 0.00 2.10
8617 11451 6.736581 TGGGTCAAATTTATGGTCCAATCTA 58.263 36.000 0.00 0.00 0.00 1.98
8618 11452 5.588845 TGGGTCAAATTTATGGTCCAATCT 58.411 37.500 0.00 0.00 0.00 2.40
8619 11453 5.930837 TGGGTCAAATTTATGGTCCAATC 57.069 39.130 0.00 0.00 0.00 2.67
8620 11454 6.889595 AATGGGTCAAATTTATGGTCCAAT 57.110 33.333 0.00 0.00 0.00 3.16
8621 11455 7.235606 TGTTAATGGGTCAAATTTATGGTCCAA 59.764 33.333 0.00 0.00 0.00 3.53
8622 11456 6.726299 TGTTAATGGGTCAAATTTATGGTCCA 59.274 34.615 0.00 0.00 0.00 4.02
8623 11457 7.039270 GTGTTAATGGGTCAAATTTATGGTCC 58.961 38.462 0.00 0.00 0.00 4.46
8624 11458 6.750039 CGTGTTAATGGGTCAAATTTATGGTC 59.250 38.462 0.00 0.00 0.00 4.02
8625 11459 6.209788 ACGTGTTAATGGGTCAAATTTATGGT 59.790 34.615 0.00 0.00 0.00 3.55
8626 11460 6.626302 ACGTGTTAATGGGTCAAATTTATGG 58.374 36.000 0.00 0.00 0.00 2.74
8627 11461 7.810282 TGAACGTGTTAATGGGTCAAATTTATG 59.190 33.333 0.00 0.00 0.00 1.90
8628 11462 7.810759 GTGAACGTGTTAATGGGTCAAATTTAT 59.189 33.333 0.00 0.00 0.00 1.40
8629 11463 7.013464 AGTGAACGTGTTAATGGGTCAAATTTA 59.987 33.333 0.00 0.00 0.00 1.40
8630 11464 5.980715 GTGAACGTGTTAATGGGTCAAATTT 59.019 36.000 0.00 0.00 0.00 1.82
8631 11465 5.300792 AGTGAACGTGTTAATGGGTCAAATT 59.699 36.000 0.00 0.00 0.00 1.82
8632 11466 4.825085 AGTGAACGTGTTAATGGGTCAAAT 59.175 37.500 0.00 0.00 0.00 2.32
8633 11467 4.035792 CAGTGAACGTGTTAATGGGTCAAA 59.964 41.667 0.00 0.00 0.00 2.69
8634 11468 3.562141 CAGTGAACGTGTTAATGGGTCAA 59.438 43.478 0.00 0.00 0.00 3.18
8635 11469 3.135225 CAGTGAACGTGTTAATGGGTCA 58.865 45.455 0.00 0.00 0.00 4.02
8636 11470 3.135994 ACAGTGAACGTGTTAATGGGTC 58.864 45.455 0.00 0.00 0.00 4.46
8637 11471 3.202829 ACAGTGAACGTGTTAATGGGT 57.797 42.857 0.00 0.00 0.00 4.51
8638 11472 3.562141 TCAACAGTGAACGTGTTAATGGG 59.438 43.478 0.00 0.00 35.93 4.00
8639 11473 4.804608 TCAACAGTGAACGTGTTAATGG 57.195 40.909 0.00 0.00 35.93 3.16
8640 11474 7.678194 AAAATCAACAGTGAACGTGTTAATG 57.322 32.000 0.00 0.00 35.93 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.