Multiple sequence alignment - TraesCS3D01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G142200 chr3D 100.000 2567 0 0 1 2567 104088053 104090619 0.000000e+00 4741
1 TraesCS3D01G142200 chr3D 98.045 665 10 1 1903 2567 3613245 3612584 0.000000e+00 1153
2 TraesCS3D01G142200 chr3D 97.748 666 12 1 1902 2567 288046790 288046128 0.000000e+00 1144
3 TraesCS3D01G142200 chr3D 85.174 344 47 4 32 372 10422381 10422039 1.460000e-92 350
4 TraesCS3D01G142200 chr3A 92.977 1310 58 15 452 1751 552229821 552228536 0.000000e+00 1879
5 TraesCS3D01G142200 chr3A 91.914 371 26 2 2 369 644672907 644672538 1.360000e-142 516
6 TraesCS3D01G142200 chr3B 95.307 1044 30 7 514 1547 154763771 154764805 0.000000e+00 1639
7 TraesCS3D01G142200 chr3B 90.226 133 7 4 1774 1905 154765284 154765411 4.390000e-38 169
8 TraesCS3D01G142200 chr7D 98.195 665 9 1 1903 2567 613376559 613377220 0.000000e+00 1158
9 TraesCS3D01G142200 chr7D 97.751 667 12 1 1901 2567 30910377 30909714 0.000000e+00 1146
10 TraesCS3D01G142200 chr4D 97.768 672 11 2 1896 2567 223441694 223442361 0.000000e+00 1155
11 TraesCS3D01G142200 chr4D 97.615 671 13 1 1900 2567 77263976 77264646 0.000000e+00 1147
12 TraesCS3D01G142200 chr6D 97.895 665 11 1 1903 2567 291373911 291374572 0.000000e+00 1147
13 TraesCS3D01G142200 chr6D 97.751 667 12 1 1901 2567 11163422 11162759 0.000000e+00 1146
14 TraesCS3D01G142200 chr5D 97.895 665 11 1 1903 2567 393980155 393980816 0.000000e+00 1147
15 TraesCS3D01G142200 chr7A 90.933 375 30 3 2 373 448488748 448488375 3.810000e-138 501
16 TraesCS3D01G142200 chr2A 91.765 340 21 3 32 368 30571008 30571343 1.390000e-127 466
17 TraesCS3D01G142200 chr2A 84.494 316 42 4 60 371 547783480 547783792 3.210000e-79 305
18 TraesCS3D01G142200 chr5A 81.868 364 62 4 12 372 400570033 400570395 1.150000e-78 303
19 TraesCS3D01G142200 chr4B 81.233 373 64 6 3 371 500103037 500103407 1.930000e-76 296
20 TraesCS3D01G142200 chr2D 81.543 363 62 5 12 371 557269603 557269243 6.950000e-76 294
21 TraesCS3D01G142200 chr2D 81.921 354 55 6 3 352 594435676 594435328 8.990000e-75 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G142200 chr3D 104088053 104090619 2566 False 4741 4741 100.0000 1 2567 1 chr3D.!!$F1 2566
1 TraesCS3D01G142200 chr3D 3612584 3613245 661 True 1153 1153 98.0450 1903 2567 1 chr3D.!!$R1 664
2 TraesCS3D01G142200 chr3D 288046128 288046790 662 True 1144 1144 97.7480 1902 2567 1 chr3D.!!$R3 665
3 TraesCS3D01G142200 chr3A 552228536 552229821 1285 True 1879 1879 92.9770 452 1751 1 chr3A.!!$R1 1299
4 TraesCS3D01G142200 chr3B 154763771 154765411 1640 False 904 1639 92.7665 514 1905 2 chr3B.!!$F1 1391
5 TraesCS3D01G142200 chr7D 613376559 613377220 661 False 1158 1158 98.1950 1903 2567 1 chr7D.!!$F1 664
6 TraesCS3D01G142200 chr7D 30909714 30910377 663 True 1146 1146 97.7510 1901 2567 1 chr7D.!!$R1 666
7 TraesCS3D01G142200 chr4D 223441694 223442361 667 False 1155 1155 97.7680 1896 2567 1 chr4D.!!$F2 671
8 TraesCS3D01G142200 chr4D 77263976 77264646 670 False 1147 1147 97.6150 1900 2567 1 chr4D.!!$F1 667
9 TraesCS3D01G142200 chr6D 291373911 291374572 661 False 1147 1147 97.8950 1903 2567 1 chr6D.!!$F1 664
10 TraesCS3D01G142200 chr6D 11162759 11163422 663 True 1146 1146 97.7510 1901 2567 1 chr6D.!!$R1 666
11 TraesCS3D01G142200 chr5D 393980155 393980816 661 False 1147 1147 97.8950 1903 2567 1 chr5D.!!$F1 664


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.040067 CTTCCGCTTGGCACTTGTTC 60.04 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2137 0.108138 GTAGACACCAAGCCGAGCAT 60.108 55.0 0.0 0.0 0.0 3.79 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.928661 GCTTCACATGTACGACTTTGAT 57.071 40.909 0.00 0.00 0.00 2.57
23 24 5.786392 GCTTCACATGTACGACTTTGATAC 58.214 41.667 0.00 0.00 0.00 2.24
24 25 5.577164 GCTTCACATGTACGACTTTGATACT 59.423 40.000 0.00 0.00 0.00 2.12
25 26 6.090898 GCTTCACATGTACGACTTTGATACTT 59.909 38.462 0.00 0.00 0.00 2.24
26 27 7.576750 TTCACATGTACGACTTTGATACTTC 57.423 36.000 0.00 0.00 0.00 3.01
27 28 6.097356 TCACATGTACGACTTTGATACTTCC 58.903 40.000 0.00 0.00 0.00 3.46
28 29 5.004440 CACATGTACGACTTTGATACTTCCG 59.996 44.000 0.00 0.00 0.00 4.30
29 30 3.504863 TGTACGACTTTGATACTTCCGC 58.495 45.455 0.00 0.00 0.00 5.54
30 31 3.192001 TGTACGACTTTGATACTTCCGCT 59.808 43.478 0.00 0.00 0.00 5.52
31 32 3.314541 ACGACTTTGATACTTCCGCTT 57.685 42.857 0.00 0.00 0.00 4.68
32 33 2.993899 ACGACTTTGATACTTCCGCTTG 59.006 45.455 0.00 0.00 0.00 4.01
33 34 2.348666 CGACTTTGATACTTCCGCTTGG 59.651 50.000 0.00 0.00 0.00 3.61
34 35 2.084546 ACTTTGATACTTCCGCTTGGC 58.915 47.619 0.00 0.00 0.00 4.52
35 36 2.083774 CTTTGATACTTCCGCTTGGCA 58.916 47.619 0.00 0.00 0.00 4.92
36 37 1.448985 TTGATACTTCCGCTTGGCAC 58.551 50.000 0.00 0.00 0.00 5.01
37 38 0.613260 TGATACTTCCGCTTGGCACT 59.387 50.000 0.00 0.00 0.00 4.40
38 39 1.003118 TGATACTTCCGCTTGGCACTT 59.997 47.619 0.00 0.00 0.00 3.16
39 40 1.398390 GATACTTCCGCTTGGCACTTG 59.602 52.381 0.00 0.00 0.00 3.16
40 41 0.107831 TACTTCCGCTTGGCACTTGT 59.892 50.000 0.00 0.00 0.00 3.16
41 42 0.751643 ACTTCCGCTTGGCACTTGTT 60.752 50.000 0.00 0.00 0.00 2.83
42 43 0.040067 CTTCCGCTTGGCACTTGTTC 60.040 55.000 0.00 0.00 0.00 3.18
43 44 1.781025 TTCCGCTTGGCACTTGTTCG 61.781 55.000 0.00 0.00 0.00 3.95
44 45 2.250939 CCGCTTGGCACTTGTTCGA 61.251 57.895 0.00 0.00 0.00 3.71
45 46 1.082756 CGCTTGGCACTTGTTCGAC 60.083 57.895 0.00 0.00 0.00 4.20
46 47 1.498865 CGCTTGGCACTTGTTCGACT 61.499 55.000 0.00 0.00 0.00 4.18
47 48 0.235926 GCTTGGCACTTGTTCGACTC 59.764 55.000 0.00 0.00 0.00 3.36
48 49 0.868406 CTTGGCACTTGTTCGACTCC 59.132 55.000 0.00 0.00 0.00 3.85
49 50 0.534203 TTGGCACTTGTTCGACTCCC 60.534 55.000 0.00 0.00 0.00 4.30
50 51 2.027625 GGCACTTGTTCGACTCCCG 61.028 63.158 0.00 0.00 40.25 5.14
51 52 1.300697 GCACTTGTTCGACTCCCGT 60.301 57.895 0.00 0.00 39.75 5.28
52 53 1.282930 GCACTTGTTCGACTCCCGTC 61.283 60.000 0.00 0.00 39.75 4.79
53 54 0.666577 CACTTGTTCGACTCCCGTCC 60.667 60.000 0.00 0.00 39.75 4.79
54 55 1.111116 ACTTGTTCGACTCCCGTCCA 61.111 55.000 0.00 0.00 39.75 4.02
55 56 0.666577 CTTGTTCGACTCCCGTCCAC 60.667 60.000 0.00 0.00 39.75 4.02
56 57 2.126580 GTTCGACTCCCGTCCACG 60.127 66.667 0.00 0.00 39.75 4.94
57 58 2.281692 TTCGACTCCCGTCCACGA 60.282 61.111 0.00 0.00 43.02 4.35
58 59 2.330372 TTCGACTCCCGTCCACGAG 61.330 63.158 0.00 0.00 43.02 4.18
59 60 3.054503 CGACTCCCGTCCACGAGT 61.055 66.667 0.00 0.00 43.02 4.18
60 61 2.567049 GACTCCCGTCCACGAGTG 59.433 66.667 0.00 0.00 43.02 3.51
107 108 1.794222 GGCGACCGAAATGTGAAGG 59.206 57.895 0.00 0.00 0.00 3.46
108 109 1.134694 GCGACCGAAATGTGAAGGC 59.865 57.895 0.00 0.00 0.00 4.35
109 110 1.573829 GCGACCGAAATGTGAAGGCA 61.574 55.000 0.00 0.00 0.00 4.75
110 111 1.086696 CGACCGAAATGTGAAGGCAT 58.913 50.000 0.00 0.00 0.00 4.40
111 112 1.062587 CGACCGAAATGTGAAGGCATC 59.937 52.381 0.00 0.00 0.00 3.91
112 113 2.083774 GACCGAAATGTGAAGGCATCA 58.916 47.619 0.00 0.00 35.05 3.07
113 114 2.487762 GACCGAAATGTGAAGGCATCAA 59.512 45.455 0.00 0.00 40.50 2.57
114 115 3.091545 ACCGAAATGTGAAGGCATCAAT 58.908 40.909 0.00 0.00 40.50 2.57
115 116 3.511146 ACCGAAATGTGAAGGCATCAATT 59.489 39.130 0.00 0.00 40.50 2.32
116 117 4.704540 ACCGAAATGTGAAGGCATCAATTA 59.295 37.500 0.00 0.00 40.50 1.40
117 118 5.036737 CCGAAATGTGAAGGCATCAATTAC 58.963 41.667 0.00 0.00 40.50 1.89
118 119 5.392919 CCGAAATGTGAAGGCATCAATTACA 60.393 40.000 0.00 0.00 40.50 2.41
119 120 6.092092 CGAAATGTGAAGGCATCAATTACAA 58.908 36.000 0.00 0.00 40.50 2.41
120 121 6.753279 CGAAATGTGAAGGCATCAATTACAAT 59.247 34.615 0.00 0.00 40.50 2.71
121 122 7.253850 CGAAATGTGAAGGCATCAATTACAATG 60.254 37.037 0.00 0.00 40.50 2.82
122 123 4.746729 TGTGAAGGCATCAATTACAATGC 58.253 39.130 9.87 9.87 45.96 3.56
123 124 4.463539 TGTGAAGGCATCAATTACAATGCT 59.536 37.500 15.27 2.06 45.95 3.79
124 125 4.802039 GTGAAGGCATCAATTACAATGCTG 59.198 41.667 15.27 0.00 45.95 4.41
125 126 4.142116 TGAAGGCATCAATTACAATGCTGG 60.142 41.667 15.27 0.00 45.95 4.85
126 127 3.368248 AGGCATCAATTACAATGCTGGT 58.632 40.909 15.27 3.37 45.95 4.00
127 128 3.770933 AGGCATCAATTACAATGCTGGTT 59.229 39.130 15.27 2.41 45.95 3.67
128 129 4.223477 AGGCATCAATTACAATGCTGGTTT 59.777 37.500 15.27 0.72 45.95 3.27
129 130 4.567959 GGCATCAATTACAATGCTGGTTTC 59.432 41.667 15.27 0.33 45.95 2.78
130 131 4.266029 GCATCAATTACAATGCTGGTTTCG 59.734 41.667 10.71 0.00 43.87 3.46
131 132 5.401550 CATCAATTACAATGCTGGTTTCGT 58.598 37.500 0.00 0.00 0.00 3.85
132 133 4.793071 TCAATTACAATGCTGGTTTCGTG 58.207 39.130 0.00 0.00 0.00 4.35
133 134 3.848272 ATTACAATGCTGGTTTCGTGG 57.152 42.857 0.00 0.00 0.00 4.94
134 135 1.529226 TACAATGCTGGTTTCGTGGG 58.471 50.000 0.00 0.00 0.00 4.61
135 136 0.467290 ACAATGCTGGTTTCGTGGGT 60.467 50.000 0.00 0.00 0.00 4.51
136 137 0.673437 CAATGCTGGTTTCGTGGGTT 59.327 50.000 0.00 0.00 0.00 4.11
137 138 1.883275 CAATGCTGGTTTCGTGGGTTA 59.117 47.619 0.00 0.00 0.00 2.85
138 139 2.491693 CAATGCTGGTTTCGTGGGTTAT 59.508 45.455 0.00 0.00 0.00 1.89
139 140 1.816074 TGCTGGTTTCGTGGGTTATC 58.184 50.000 0.00 0.00 0.00 1.75
140 141 1.349688 TGCTGGTTTCGTGGGTTATCT 59.650 47.619 0.00 0.00 0.00 1.98
141 142 1.737793 GCTGGTTTCGTGGGTTATCTG 59.262 52.381 0.00 0.00 0.00 2.90
142 143 2.356135 CTGGTTTCGTGGGTTATCTGG 58.644 52.381 0.00 0.00 0.00 3.86
143 144 1.979308 TGGTTTCGTGGGTTATCTGGA 59.021 47.619 0.00 0.00 0.00 3.86
144 145 2.372504 TGGTTTCGTGGGTTATCTGGAA 59.627 45.455 0.00 0.00 0.00 3.53
145 146 2.745821 GGTTTCGTGGGTTATCTGGAAC 59.254 50.000 0.00 0.00 0.00 3.62
146 147 2.373540 TTCGTGGGTTATCTGGAACG 57.626 50.000 0.00 0.00 0.00 3.95
147 148 1.548081 TCGTGGGTTATCTGGAACGA 58.452 50.000 0.00 0.00 37.68 3.85
148 149 1.475280 TCGTGGGTTATCTGGAACGAG 59.525 52.381 0.00 0.00 35.35 4.18
149 150 1.653151 GTGGGTTATCTGGAACGAGC 58.347 55.000 0.00 0.00 0.00 5.03
150 151 1.207329 GTGGGTTATCTGGAACGAGCT 59.793 52.381 0.00 0.00 0.00 4.09
151 152 1.906574 TGGGTTATCTGGAACGAGCTT 59.093 47.619 0.00 0.00 0.00 3.74
152 153 3.101437 TGGGTTATCTGGAACGAGCTTA 58.899 45.455 0.00 0.00 0.00 3.09
153 154 3.516300 TGGGTTATCTGGAACGAGCTTAA 59.484 43.478 0.00 0.00 0.00 1.85
154 155 4.163458 TGGGTTATCTGGAACGAGCTTAAT 59.837 41.667 0.00 0.00 0.00 1.40
155 156 4.511826 GGGTTATCTGGAACGAGCTTAATG 59.488 45.833 0.00 0.00 0.00 1.90
156 157 4.024809 GGTTATCTGGAACGAGCTTAATGC 60.025 45.833 0.00 0.00 43.29 3.56
157 158 2.760634 TCTGGAACGAGCTTAATGCA 57.239 45.000 0.00 0.00 45.94 3.96
158 159 3.052455 TCTGGAACGAGCTTAATGCAA 57.948 42.857 0.00 0.00 45.94 4.08
159 160 3.002791 TCTGGAACGAGCTTAATGCAAG 58.997 45.455 0.00 0.00 45.94 4.01
160 161 2.083774 TGGAACGAGCTTAATGCAAGG 58.916 47.619 0.00 0.00 45.94 3.61
162 163 2.488153 GGAACGAGCTTAATGCAAGGTT 59.512 45.455 0.00 0.00 44.94 3.50
163 164 3.057526 GGAACGAGCTTAATGCAAGGTTT 60.058 43.478 0.00 0.00 44.94 3.27
164 165 3.831715 ACGAGCTTAATGCAAGGTTTC 57.168 42.857 0.00 0.00 44.94 2.78
165 166 2.159627 ACGAGCTTAATGCAAGGTTTCG 59.840 45.455 0.00 0.00 44.94 3.46
166 167 2.476185 CGAGCTTAATGCAAGGTTTCGG 60.476 50.000 0.00 0.00 44.94 4.30
167 168 1.202348 AGCTTAATGCAAGGTTTCGGC 59.798 47.619 0.00 0.00 42.32 5.54
168 169 1.067915 GCTTAATGCAAGGTTTCGGCA 60.068 47.619 0.00 0.00 42.31 5.69
170 171 3.181491 GCTTAATGCAAGGTTTCGGCATA 60.181 43.478 0.00 0.00 46.77 3.14
171 172 4.676723 GCTTAATGCAAGGTTTCGGCATAA 60.677 41.667 0.00 0.00 46.77 1.90
172 173 3.508744 AATGCAAGGTTTCGGCATAAG 57.491 42.857 0.00 0.00 46.77 1.73
173 174 2.192664 TGCAAGGTTTCGGCATAAGA 57.807 45.000 0.00 0.00 31.58 2.10
174 175 2.083774 TGCAAGGTTTCGGCATAAGAG 58.916 47.619 0.00 0.00 31.58 2.85
175 176 1.202188 GCAAGGTTTCGGCATAAGAGC 60.202 52.381 0.00 0.00 0.00 4.09
176 177 1.062587 CAAGGTTTCGGCATAAGAGCG 59.937 52.381 0.00 0.00 34.64 5.03
177 178 1.090052 AGGTTTCGGCATAAGAGCGC 61.090 55.000 0.00 0.00 34.64 5.92
178 179 1.366111 GGTTTCGGCATAAGAGCGCA 61.366 55.000 11.47 0.00 34.64 6.09
179 180 0.657840 GTTTCGGCATAAGAGCGCAT 59.342 50.000 11.47 0.00 34.64 4.73
180 181 0.937304 TTTCGGCATAAGAGCGCATC 59.063 50.000 11.47 4.24 34.64 3.91
181 182 0.179086 TTCGGCATAAGAGCGCATCA 60.179 50.000 11.47 0.00 34.64 3.07
182 183 0.875908 TCGGCATAAGAGCGCATCAC 60.876 55.000 11.47 0.00 34.64 3.06
183 184 1.835483 CGGCATAAGAGCGCATCACC 61.835 60.000 11.47 0.00 34.64 4.02
184 185 1.566563 GCATAAGAGCGCATCACCG 59.433 57.895 11.47 0.00 0.00 4.94
192 193 3.501396 CGCATCACCGCAAATCCT 58.499 55.556 0.00 0.00 0.00 3.24
193 194 2.689083 CGCATCACCGCAAATCCTA 58.311 52.632 0.00 0.00 0.00 2.94
194 195 0.304705 CGCATCACCGCAAATCCTAC 59.695 55.000 0.00 0.00 0.00 3.18
195 196 1.668419 GCATCACCGCAAATCCTACT 58.332 50.000 0.00 0.00 0.00 2.57
196 197 1.599542 GCATCACCGCAAATCCTACTC 59.400 52.381 0.00 0.00 0.00 2.59
197 198 2.905075 CATCACCGCAAATCCTACTCA 58.095 47.619 0.00 0.00 0.00 3.41
198 199 3.270027 CATCACCGCAAATCCTACTCAA 58.730 45.455 0.00 0.00 0.00 3.02
199 200 2.695359 TCACCGCAAATCCTACTCAAC 58.305 47.619 0.00 0.00 0.00 3.18
200 201 2.037902 TCACCGCAAATCCTACTCAACA 59.962 45.455 0.00 0.00 0.00 3.33
201 202 2.159627 CACCGCAAATCCTACTCAACAC 59.840 50.000 0.00 0.00 0.00 3.32
202 203 1.737793 CCGCAAATCCTACTCAACACC 59.262 52.381 0.00 0.00 0.00 4.16
203 204 2.422597 CGCAAATCCTACTCAACACCA 58.577 47.619 0.00 0.00 0.00 4.17
204 205 3.009723 CGCAAATCCTACTCAACACCAT 58.990 45.455 0.00 0.00 0.00 3.55
205 206 3.063997 CGCAAATCCTACTCAACACCATC 59.936 47.826 0.00 0.00 0.00 3.51
206 207 4.009675 GCAAATCCTACTCAACACCATCA 58.990 43.478 0.00 0.00 0.00 3.07
207 208 4.641989 GCAAATCCTACTCAACACCATCAT 59.358 41.667 0.00 0.00 0.00 2.45
208 209 5.220931 GCAAATCCTACTCAACACCATCATC 60.221 44.000 0.00 0.00 0.00 2.92
209 210 3.801114 TCCTACTCAACACCATCATCG 57.199 47.619 0.00 0.00 0.00 3.84
210 211 3.361786 TCCTACTCAACACCATCATCGA 58.638 45.455 0.00 0.00 0.00 3.59
211 212 3.960755 TCCTACTCAACACCATCATCGAT 59.039 43.478 0.00 0.00 0.00 3.59
212 213 4.053983 CCTACTCAACACCATCATCGATG 58.946 47.826 19.61 19.61 39.52 3.84
213 214 3.893326 ACTCAACACCATCATCGATGA 57.107 42.857 29.09 29.09 42.09 2.92
214 215 3.790091 ACTCAACACCATCATCGATGAG 58.210 45.455 30.11 20.79 42.09 2.90
215 216 3.448660 ACTCAACACCATCATCGATGAGA 59.551 43.478 30.11 19.31 42.09 3.27
216 217 3.785486 TCAACACCATCATCGATGAGAC 58.215 45.455 30.11 0.00 42.09 3.36
217 218 3.195396 TCAACACCATCATCGATGAGACA 59.805 43.478 30.11 10.46 42.09 3.41
218 219 3.893326 ACACCATCATCGATGAGACAA 57.107 42.857 30.11 10.08 42.09 3.18
219 220 4.206477 ACACCATCATCGATGAGACAAA 57.794 40.909 30.11 9.34 42.09 2.83
220 221 3.935203 ACACCATCATCGATGAGACAAAC 59.065 43.478 30.11 0.00 42.09 2.93
221 222 3.310774 CACCATCATCGATGAGACAAACC 59.689 47.826 30.11 0.00 42.09 3.27
222 223 3.198635 ACCATCATCGATGAGACAAACCT 59.801 43.478 30.11 10.79 42.09 3.50
223 224 4.194640 CCATCATCGATGAGACAAACCTT 58.805 43.478 30.11 10.09 42.09 3.50
224 225 4.637534 CCATCATCGATGAGACAAACCTTT 59.362 41.667 30.11 9.37 42.09 3.11
225 226 5.448225 CCATCATCGATGAGACAAACCTTTG 60.448 44.000 30.11 19.32 42.09 2.77
226 227 4.002982 TCATCGATGAGACAAACCTTTGG 58.997 43.478 23.99 0.00 36.10 3.28
227 228 2.778299 TCGATGAGACAAACCTTTGGG 58.222 47.619 2.94 0.00 42.34 4.12
228 229 7.496639 TCATCGATGAGACAAACCTTTGGGT 62.497 44.000 23.99 0.00 38.73 4.51
229 230 2.484264 CGATGAGACAAACCTTTGGGTC 59.516 50.000 2.94 0.00 46.67 4.46
230 231 3.486383 GATGAGACAAACCTTTGGGTCA 58.514 45.455 2.94 5.12 46.67 4.02
231 232 2.650322 TGAGACAAACCTTTGGGTCAC 58.350 47.619 2.94 0.00 46.67 3.67
232 233 1.602377 GAGACAAACCTTTGGGTCACG 59.398 52.381 2.94 0.00 46.67 4.35
233 234 0.666374 GACAAACCTTTGGGTCACGG 59.334 55.000 2.94 0.00 46.67 4.94
234 235 1.362355 CAAACCTTTGGGTCACGGC 59.638 57.895 0.00 0.00 46.67 5.68
235 236 1.830847 AAACCTTTGGGTCACGGCC 60.831 57.895 0.00 0.00 46.67 6.13
236 237 4.636435 ACCTTTGGGTCACGGCCG 62.636 66.667 26.86 26.86 43.38 6.13
249 250 2.754254 GGCCGGGGCGAAGAAATT 60.754 61.111 4.27 0.00 43.06 1.82
250 251 1.452470 GGCCGGGGCGAAGAAATTA 60.452 57.895 4.27 0.00 43.06 1.40
251 252 1.444917 GGCCGGGGCGAAGAAATTAG 61.445 60.000 4.27 0.00 43.06 1.73
252 253 1.444917 GCCGGGGCGAAGAAATTAGG 61.445 60.000 2.18 0.00 0.00 2.69
253 254 0.818040 CCGGGGCGAAGAAATTAGGG 60.818 60.000 0.00 0.00 0.00 3.53
254 255 0.107361 CGGGGCGAAGAAATTAGGGT 60.107 55.000 0.00 0.00 0.00 4.34
255 256 1.676746 GGGGCGAAGAAATTAGGGTC 58.323 55.000 0.00 0.00 0.00 4.46
256 257 1.212195 GGGGCGAAGAAATTAGGGTCT 59.788 52.381 0.00 0.00 0.00 3.85
257 258 2.356844 GGGGCGAAGAAATTAGGGTCTT 60.357 50.000 0.00 0.00 36.80 3.01
258 259 3.353557 GGGCGAAGAAATTAGGGTCTTT 58.646 45.455 0.00 0.00 34.23 2.52
259 260 3.762288 GGGCGAAGAAATTAGGGTCTTTT 59.238 43.478 0.00 0.00 34.23 2.27
260 261 4.219944 GGGCGAAGAAATTAGGGTCTTTTT 59.780 41.667 0.00 0.00 34.23 1.94
283 284 7.912949 TTTATTGCGAGAATAATTGTCATGC 57.087 32.000 0.00 0.00 0.00 4.06
284 285 3.969117 TGCGAGAATAATTGTCATGCC 57.031 42.857 0.00 0.00 0.00 4.40
285 286 2.287644 TGCGAGAATAATTGTCATGCCG 59.712 45.455 0.00 0.00 0.00 5.69
286 287 2.543848 GCGAGAATAATTGTCATGCCGA 59.456 45.455 0.00 0.00 0.00 5.54
287 288 3.187227 GCGAGAATAATTGTCATGCCGAT 59.813 43.478 0.00 0.00 0.00 4.18
288 289 4.319766 GCGAGAATAATTGTCATGCCGATT 60.320 41.667 0.00 0.00 0.00 3.34
289 290 5.377358 CGAGAATAATTGTCATGCCGATTC 58.623 41.667 0.00 0.00 0.00 2.52
290 291 5.178252 CGAGAATAATTGTCATGCCGATTCT 59.822 40.000 0.00 0.00 35.44 2.40
291 292 6.293081 CGAGAATAATTGTCATGCCGATTCTT 60.293 38.462 0.00 0.00 33.47 2.52
292 293 6.732154 AGAATAATTGTCATGCCGATTCTTG 58.268 36.000 0.00 0.00 30.00 3.02
293 294 3.788333 AATTGTCATGCCGATTCTTGG 57.212 42.857 0.00 0.00 0.00 3.61
301 302 2.932663 CCGATTCTTGGCTGTGTGT 58.067 52.632 0.00 0.00 0.00 3.72
302 303 1.238439 CCGATTCTTGGCTGTGTGTT 58.762 50.000 0.00 0.00 0.00 3.32
303 304 1.069022 CCGATTCTTGGCTGTGTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
304 305 1.603802 CGATTCTTGGCTGTGTGTTGT 59.396 47.619 0.00 0.00 0.00 3.32
305 306 2.805671 CGATTCTTGGCTGTGTGTTGTA 59.194 45.455 0.00 0.00 0.00 2.41
306 307 3.249799 CGATTCTTGGCTGTGTGTTGTAA 59.750 43.478 0.00 0.00 0.00 2.41
307 308 4.537015 GATTCTTGGCTGTGTGTTGTAAC 58.463 43.478 0.00 0.00 0.00 2.50
308 309 2.992593 TCTTGGCTGTGTGTTGTAACA 58.007 42.857 0.00 0.00 36.38 2.41
309 310 3.348119 TCTTGGCTGTGTGTTGTAACAA 58.652 40.909 0.00 0.00 41.21 2.83
310 311 3.759086 TCTTGGCTGTGTGTTGTAACAAA 59.241 39.130 0.00 0.00 41.21 2.83
311 312 3.495670 TGGCTGTGTGTTGTAACAAAC 57.504 42.857 10.43 10.43 45.37 2.93
312 313 3.085533 TGGCTGTGTGTTGTAACAAACT 58.914 40.909 16.56 0.00 45.37 2.66
313 314 3.127895 TGGCTGTGTGTTGTAACAAACTC 59.872 43.478 16.56 9.71 45.37 3.01
314 315 3.377172 GGCTGTGTGTTGTAACAAACTCT 59.623 43.478 16.56 0.00 45.37 3.24
315 316 4.142469 GGCTGTGTGTTGTAACAAACTCTT 60.142 41.667 16.56 0.00 45.37 2.85
316 317 5.399013 GCTGTGTGTTGTAACAAACTCTTT 58.601 37.500 16.56 0.00 45.37 2.52
317 318 5.861787 GCTGTGTGTTGTAACAAACTCTTTT 59.138 36.000 16.56 0.00 45.37 2.27
318 319 6.364976 GCTGTGTGTTGTAACAAACTCTTTTT 59.635 34.615 16.56 0.00 45.37 1.94
319 320 7.410407 GCTGTGTGTTGTAACAAACTCTTTTTC 60.410 37.037 16.56 0.00 45.37 2.29
320 321 6.864165 TGTGTGTTGTAACAAACTCTTTTTCC 59.136 34.615 16.56 0.00 45.37 3.13
321 322 7.088272 GTGTGTTGTAACAAACTCTTTTTCCT 58.912 34.615 10.14 0.00 42.56 3.36
322 323 7.272731 GTGTGTTGTAACAAACTCTTTTTCCTC 59.727 37.037 10.14 0.00 42.56 3.71
323 324 6.750501 GTGTTGTAACAAACTCTTTTTCCTCC 59.249 38.462 0.00 0.00 41.21 4.30
324 325 6.661805 TGTTGTAACAAACTCTTTTTCCTCCT 59.338 34.615 0.00 0.00 35.67 3.69
325 326 7.177744 TGTTGTAACAAACTCTTTTTCCTCCTT 59.822 33.333 0.00 0.00 35.67 3.36
326 327 8.680001 GTTGTAACAAACTCTTTTTCCTCCTTA 58.320 33.333 0.00 0.00 0.00 2.69
327 328 8.990163 TGTAACAAACTCTTTTTCCTCCTTAT 57.010 30.769 0.00 0.00 0.00 1.73
328 329 9.416284 TGTAACAAACTCTTTTTCCTCCTTATT 57.584 29.630 0.00 0.00 0.00 1.40
393 394 7.637631 AAATCTGGAGAGGAAAAATAGAAGC 57.362 36.000 0.00 0.00 0.00 3.86
394 395 5.762179 TCTGGAGAGGAAAAATAGAAGCA 57.238 39.130 0.00 0.00 0.00 3.91
395 396 6.126863 TCTGGAGAGGAAAAATAGAAGCAA 57.873 37.500 0.00 0.00 0.00 3.91
396 397 6.725364 TCTGGAGAGGAAAAATAGAAGCAAT 58.275 36.000 0.00 0.00 0.00 3.56
397 398 6.600822 TCTGGAGAGGAAAAATAGAAGCAATG 59.399 38.462 0.00 0.00 0.00 2.82
398 399 5.653769 TGGAGAGGAAAAATAGAAGCAATGG 59.346 40.000 0.00 0.00 0.00 3.16
399 400 5.451103 GGAGAGGAAAAATAGAAGCAATGGC 60.451 44.000 0.00 0.00 41.61 4.40
400 401 5.018809 AGAGGAAAAATAGAAGCAATGGCA 58.981 37.500 0.00 0.00 44.61 4.92
401 402 5.077134 AGGAAAAATAGAAGCAATGGCAC 57.923 39.130 0.00 0.00 44.61 5.01
402 403 4.081476 AGGAAAAATAGAAGCAATGGCACC 60.081 41.667 0.00 0.00 44.61 5.01
403 404 4.322650 GGAAAAATAGAAGCAATGGCACCA 60.323 41.667 0.00 0.00 44.61 4.17
404 405 3.874392 AAATAGAAGCAATGGCACCAC 57.126 42.857 0.00 0.00 44.61 4.16
405 406 2.814805 ATAGAAGCAATGGCACCACT 57.185 45.000 0.00 0.00 44.61 4.00
406 407 1.825090 TAGAAGCAATGGCACCACTG 58.175 50.000 0.00 0.00 44.61 3.66
407 408 0.111061 AGAAGCAATGGCACCACTGA 59.889 50.000 1.58 0.00 44.61 3.41
408 409 0.961019 GAAGCAATGGCACCACTGAA 59.039 50.000 1.58 0.00 44.61 3.02
409 410 1.340889 GAAGCAATGGCACCACTGAAA 59.659 47.619 1.58 0.00 44.61 2.69
410 411 0.963962 AGCAATGGCACCACTGAAAG 59.036 50.000 1.58 0.00 44.61 2.62
411 412 0.668401 GCAATGGCACCACTGAAAGC 60.668 55.000 1.58 0.00 40.72 3.51
412 413 0.963962 CAATGGCACCACTGAAAGCT 59.036 50.000 0.00 0.00 37.60 3.74
413 414 0.963962 AATGGCACCACTGAAAGCTG 59.036 50.000 0.00 0.00 37.60 4.24
414 415 0.111061 ATGGCACCACTGAAAGCTGA 59.889 50.000 0.00 0.00 37.60 4.26
415 416 0.535780 TGGCACCACTGAAAGCTGAG 60.536 55.000 0.00 0.00 37.60 3.35
416 417 0.250467 GGCACCACTGAAAGCTGAGA 60.250 55.000 0.00 0.00 37.60 3.27
417 418 0.871057 GCACCACTGAAAGCTGAGAC 59.129 55.000 0.00 0.00 37.60 3.36
418 419 1.517242 CACCACTGAAAGCTGAGACC 58.483 55.000 0.00 0.00 37.60 3.85
419 420 1.131638 ACCACTGAAAGCTGAGACCA 58.868 50.000 0.00 0.00 37.60 4.02
420 421 1.701847 ACCACTGAAAGCTGAGACCAT 59.298 47.619 0.00 0.00 37.60 3.55
421 422 2.082231 CCACTGAAAGCTGAGACCATG 58.918 52.381 0.00 0.00 37.60 3.66
422 423 1.467734 CACTGAAAGCTGAGACCATGC 59.532 52.381 0.00 0.00 37.60 4.06
423 424 1.072806 ACTGAAAGCTGAGACCATGCA 59.927 47.619 0.00 0.00 37.60 3.96
424 425 2.290768 ACTGAAAGCTGAGACCATGCAT 60.291 45.455 0.00 0.00 37.60 3.96
425 426 2.089201 TGAAAGCTGAGACCATGCATG 58.911 47.619 20.19 20.19 0.00 4.06
426 427 0.815734 AAAGCTGAGACCATGCATGC 59.184 50.000 21.69 11.82 0.00 4.06
427 428 0.323087 AAGCTGAGACCATGCATGCA 60.323 50.000 25.04 25.04 0.00 3.96
428 429 0.106669 AGCTGAGACCATGCATGCAT 60.107 50.000 27.46 27.46 37.08 3.96
429 430 1.142262 AGCTGAGACCATGCATGCATA 59.858 47.619 31.73 15.06 34.91 3.14
430 431 1.951602 GCTGAGACCATGCATGCATAA 59.048 47.619 31.73 5.65 34.91 1.90
431 432 2.359848 GCTGAGACCATGCATGCATAAA 59.640 45.455 31.73 13.06 34.91 1.40
432 433 3.005472 GCTGAGACCATGCATGCATAAAT 59.995 43.478 31.73 19.82 34.91 1.40
433 434 4.216902 GCTGAGACCATGCATGCATAAATA 59.783 41.667 31.73 15.19 34.91 1.40
434 435 5.278610 GCTGAGACCATGCATGCATAAATAA 60.279 40.000 31.73 15.19 34.91 1.40
435 436 6.075762 TGAGACCATGCATGCATAAATAAC 57.924 37.500 31.73 20.27 34.91 1.89
436 437 5.112220 AGACCATGCATGCATAAATAACG 57.888 39.130 31.73 17.52 34.91 3.18
437 438 4.821260 AGACCATGCATGCATAAATAACGA 59.179 37.500 31.73 0.55 34.91 3.85
438 439 5.049198 AGACCATGCATGCATAAATAACGAG 60.049 40.000 31.73 16.12 34.91 4.18
439 440 3.916172 CCATGCATGCATAAATAACGAGC 59.084 43.478 31.73 0.00 34.91 5.03
440 441 4.320714 CCATGCATGCATAAATAACGAGCT 60.321 41.667 31.73 4.16 34.91 4.09
441 442 4.898829 TGCATGCATAAATAACGAGCTT 57.101 36.364 18.46 0.00 0.00 3.74
442 443 6.372981 CATGCATGCATAAATAACGAGCTTA 58.627 36.000 31.73 0.00 34.91 3.09
443 444 6.558771 TGCATGCATAAATAACGAGCTTAT 57.441 33.333 18.46 0.00 0.00 1.73
444 445 6.602179 TGCATGCATAAATAACGAGCTTATC 58.398 36.000 18.46 0.00 0.00 1.75
445 446 6.427853 TGCATGCATAAATAACGAGCTTATCT 59.572 34.615 18.46 0.00 0.00 1.98
446 447 7.041167 TGCATGCATAAATAACGAGCTTATCTT 60.041 33.333 18.46 0.00 0.00 2.40
447 448 7.805071 GCATGCATAAATAACGAGCTTATCTTT 59.195 33.333 14.21 0.00 0.00 2.52
448 449 9.322776 CATGCATAAATAACGAGCTTATCTTTC 57.677 33.333 0.00 0.00 0.00 2.62
449 450 7.861630 TGCATAAATAACGAGCTTATCTTTCC 58.138 34.615 0.00 0.00 0.00 3.13
450 451 7.010023 GCATAAATAACGAGCTTATCTTTCCG 58.990 38.462 0.00 0.00 0.00 4.30
451 452 7.095774 GCATAAATAACGAGCTTATCTTTCCGA 60.096 37.037 0.00 0.00 0.00 4.55
452 453 8.926710 CATAAATAACGAGCTTATCTTTCCGAT 58.073 33.333 0.00 0.00 36.11 4.18
453 454 7.787725 AAATAACGAGCTTATCTTTCCGATT 57.212 32.000 0.00 0.00 33.48 3.34
454 455 8.882415 AAATAACGAGCTTATCTTTCCGATTA 57.118 30.769 0.00 0.00 33.48 1.75
455 456 9.490379 AAATAACGAGCTTATCTTTCCGATTAT 57.510 29.630 0.00 0.00 33.48 1.28
456 457 6.771188 AACGAGCTTATCTTTCCGATTATG 57.229 37.500 0.00 0.00 33.48 1.90
457 458 6.085555 ACGAGCTTATCTTTCCGATTATGA 57.914 37.500 0.00 0.00 33.48 2.15
458 459 6.692486 ACGAGCTTATCTTTCCGATTATGAT 58.308 36.000 0.00 0.00 33.48 2.45
471 472 5.692654 TCCGATTATGATTTTTCGCGTATCA 59.307 36.000 5.77 11.67 33.25 2.15
481 482 4.634349 TTTCGCGTATCACAAACACTAC 57.366 40.909 5.77 0.00 0.00 2.73
484 485 4.655027 TCGCGTATCACAAACACTACTAG 58.345 43.478 5.77 0.00 0.00 2.57
505 506 2.801342 GCTAGCTAGCTTGCCACTACTG 60.801 54.545 32.67 9.33 45.62 2.74
507 508 0.107945 GCTAGCTTGCCACTACTGCT 60.108 55.000 9.15 0.00 37.72 4.24
508 509 1.137086 GCTAGCTTGCCACTACTGCTA 59.863 52.381 9.15 0.00 35.47 3.49
509 510 3.090952 CTAGCTTGCCACTACTGCTAG 57.909 52.381 0.00 0.00 44.36 3.42
510 511 1.270907 AGCTTGCCACTACTGCTAGT 58.729 50.000 0.00 0.00 34.66 2.57
511 512 2.457598 AGCTTGCCACTACTGCTAGTA 58.542 47.619 0.00 0.00 34.66 1.82
512 513 3.034635 AGCTTGCCACTACTGCTAGTAT 58.965 45.455 0.00 0.00 34.66 2.12
513 514 4.215908 AGCTTGCCACTACTGCTAGTATA 58.784 43.478 0.00 0.00 34.66 1.47
514 515 4.835615 AGCTTGCCACTACTGCTAGTATAT 59.164 41.667 0.00 0.00 34.66 0.86
547 548 4.876107 TGGATAAGAAAATTCGAGCAGGTC 59.124 41.667 0.00 0.00 0.00 3.85
579 582 1.975407 CTGCCACCTTCCCAAGCTG 60.975 63.158 0.00 0.00 0.00 4.24
630 633 0.173708 GAGACGTTGAGGCCCTGTAG 59.826 60.000 0.00 0.00 0.00 2.74
631 634 1.448013 GACGTTGAGGCCCTGTAGC 60.448 63.158 0.00 0.00 0.00 3.58
632 635 1.889530 GACGTTGAGGCCCTGTAGCT 61.890 60.000 0.00 0.00 0.00 3.32
634 637 1.153549 GTTGAGGCCCTGTAGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
635 638 1.304962 TTGAGGCCCTGTAGCTCGA 60.305 57.895 0.00 0.00 0.00 4.04
984 995 0.968405 TGGTTTCTTGCATCAAGGGC 59.032 50.000 6.71 0.00 41.33 5.19
1452 1471 2.045524 GCCATGAGGGAGATCTTCAGA 58.954 52.381 2.72 0.00 40.01 3.27
1552 1571 1.140852 TCACCAAGGACCTCAACTGTG 59.859 52.381 0.00 0.00 0.00 3.66
1557 1576 0.037303 AGGACCTCAACTGTGCCATG 59.963 55.000 0.00 0.00 0.00 3.66
1594 1613 1.136500 AGTATCCGACCTCCTTTTCGC 59.864 52.381 0.00 0.00 33.78 4.70
1602 1621 1.302832 CTCCTTTTCGCCTGGCTGT 60.303 57.895 17.92 0.00 0.00 4.40
1603 1622 1.580845 CTCCTTTTCGCCTGGCTGTG 61.581 60.000 17.92 0.88 0.00 3.66
1604 1623 1.898574 CCTTTTCGCCTGGCTGTGT 60.899 57.895 17.92 0.00 0.00 3.72
1697 1807 2.676839 CTCAGTGTGGAATCATCAGTGC 59.323 50.000 6.79 0.00 33.95 4.40
1848 2153 0.175760 TCTATGCTCGGCTTGGTGTC 59.824 55.000 0.00 0.00 0.00 3.67
1852 2157 1.185618 TGCTCGGCTTGGTGTCTACT 61.186 55.000 0.00 0.00 0.00 2.57
1854 2159 1.469423 GCTCGGCTTGGTGTCTACTAC 60.469 57.143 0.00 0.00 0.00 2.73
1856 2161 0.806868 CGGCTTGGTGTCTACTACGA 59.193 55.000 0.00 0.00 0.00 3.43
1857 2162 1.404391 CGGCTTGGTGTCTACTACGAT 59.596 52.381 0.00 0.00 0.00 3.73
1858 2163 2.794981 CGGCTTGGTGTCTACTACGATG 60.795 54.545 0.00 0.00 0.00 3.84
1859 2164 2.194271 GCTTGGTGTCTACTACGATGC 58.806 52.381 0.00 0.00 0.00 3.91
1860 2165 2.416836 GCTTGGTGTCTACTACGATGCA 60.417 50.000 0.00 0.00 30.82 3.96
1861 2166 3.738281 GCTTGGTGTCTACTACGATGCAT 60.738 47.826 0.00 0.00 30.82 3.96
1862 2167 3.436700 TGGTGTCTACTACGATGCATG 57.563 47.619 2.46 0.00 0.00 4.06
1863 2168 2.758423 TGGTGTCTACTACGATGCATGT 59.242 45.455 2.46 5.42 0.00 3.21
1864 2169 3.949113 TGGTGTCTACTACGATGCATGTA 59.051 43.478 2.46 6.38 0.00 2.29
1937 2242 9.352191 AGTCATTATGGTATACGACTTCTAGTT 57.648 33.333 3.78 0.00 29.68 2.24
1967 2272 4.859691 AGTTTTATACCCCTACCCCAAGTT 59.140 41.667 0.00 0.00 0.00 2.66
2028 2333 6.292488 CCAAATCATCAACAAGCAACAGTTTC 60.292 38.462 0.00 0.00 0.00 2.78
2076 2381 2.371179 GGTCCTAGGGTTTAGGGTATGC 59.629 54.545 9.46 0.00 35.45 3.14
2084 2389 0.983905 TTTAGGGTATGCCTCCGCCA 60.984 55.000 0.00 0.00 34.45 5.69
2085 2390 0.983905 TTAGGGTATGCCTCCGCCAA 60.984 55.000 0.00 0.00 34.45 4.52
2086 2391 1.692173 TAGGGTATGCCTCCGCCAAC 61.692 60.000 0.00 0.00 34.45 3.77
2306 2617 1.143183 CGCCGCCCACAACTACTAT 59.857 57.895 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.928661 ATCAAAGTCGTACATGTGAAGC 57.071 40.909 9.11 0.00 0.00 3.86
1 2 7.201444 GGAAGTATCAAAGTCGTACATGTGAAG 60.201 40.741 9.11 0.00 0.00 3.02
3 4 6.097356 GGAAGTATCAAAGTCGTACATGTGA 58.903 40.000 9.11 0.00 0.00 3.58
4 5 5.004440 CGGAAGTATCAAAGTCGTACATGTG 59.996 44.000 9.11 0.00 0.00 3.21
5 6 5.100259 CGGAAGTATCAAAGTCGTACATGT 58.900 41.667 2.69 2.69 0.00 3.21
6 7 4.026804 GCGGAAGTATCAAAGTCGTACATG 60.027 45.833 0.00 0.00 0.00 3.21
7 8 4.110482 GCGGAAGTATCAAAGTCGTACAT 58.890 43.478 0.00 0.00 0.00 2.29
8 9 3.192001 AGCGGAAGTATCAAAGTCGTACA 59.808 43.478 0.00 0.00 0.00 2.90
9 10 3.767278 AGCGGAAGTATCAAAGTCGTAC 58.233 45.455 0.00 0.00 0.00 3.67
10 11 4.171005 CAAGCGGAAGTATCAAAGTCGTA 58.829 43.478 0.00 0.00 0.00 3.43
11 12 2.993899 CAAGCGGAAGTATCAAAGTCGT 59.006 45.455 0.00 0.00 0.00 4.34
12 13 2.348666 CCAAGCGGAAGTATCAAAGTCG 59.651 50.000 0.00 0.00 0.00 4.18
13 14 2.096013 GCCAAGCGGAAGTATCAAAGTC 59.904 50.000 0.00 0.00 0.00 3.01
14 15 2.084546 GCCAAGCGGAAGTATCAAAGT 58.915 47.619 0.00 0.00 0.00 2.66
15 16 2.083774 TGCCAAGCGGAAGTATCAAAG 58.916 47.619 0.00 0.00 0.00 2.77
16 17 1.810151 GTGCCAAGCGGAAGTATCAAA 59.190 47.619 0.00 0.00 0.00 2.69
17 18 1.003118 AGTGCCAAGCGGAAGTATCAA 59.997 47.619 0.00 0.00 0.00 2.57
18 19 0.613260 AGTGCCAAGCGGAAGTATCA 59.387 50.000 0.00 0.00 0.00 2.15
19 20 1.398390 CAAGTGCCAAGCGGAAGTATC 59.602 52.381 0.00 0.00 0.00 2.24
20 21 1.271379 ACAAGTGCCAAGCGGAAGTAT 60.271 47.619 0.00 0.00 0.00 2.12
21 22 0.107831 ACAAGTGCCAAGCGGAAGTA 59.892 50.000 0.00 0.00 0.00 2.24
22 23 0.751643 AACAAGTGCCAAGCGGAAGT 60.752 50.000 0.00 0.00 0.00 3.01
23 24 0.040067 GAACAAGTGCCAAGCGGAAG 60.040 55.000 0.00 0.00 0.00 3.46
24 25 1.781025 CGAACAAGTGCCAAGCGGAA 61.781 55.000 0.00 0.00 0.00 4.30
25 26 2.250939 CGAACAAGTGCCAAGCGGA 61.251 57.895 0.00 0.00 0.00 5.54
26 27 2.250939 TCGAACAAGTGCCAAGCGG 61.251 57.895 0.00 0.00 0.00 5.52
27 28 1.082756 GTCGAACAAGTGCCAAGCG 60.083 57.895 0.00 0.00 0.00 4.68
28 29 0.235926 GAGTCGAACAAGTGCCAAGC 59.764 55.000 0.00 0.00 0.00 4.01
29 30 0.868406 GGAGTCGAACAAGTGCCAAG 59.132 55.000 0.00 0.00 0.00 3.61
30 31 0.534203 GGGAGTCGAACAAGTGCCAA 60.534 55.000 0.00 0.00 30.80 4.52
31 32 1.070786 GGGAGTCGAACAAGTGCCA 59.929 57.895 0.00 0.00 30.80 4.92
32 33 2.027625 CGGGAGTCGAACAAGTGCC 61.028 63.158 0.00 0.00 42.43 5.01
33 34 1.300697 ACGGGAGTCGAACAAGTGC 60.301 57.895 0.00 0.00 40.62 4.40
89 90 1.794222 CCTTCACATTTCGGTCGCC 59.206 57.895 0.00 0.00 0.00 5.54
90 91 1.134694 GCCTTCACATTTCGGTCGC 59.865 57.895 0.00 0.00 0.00 5.19
91 92 1.062587 GATGCCTTCACATTTCGGTCG 59.937 52.381 0.00 0.00 0.00 4.79
92 93 2.083774 TGATGCCTTCACATTTCGGTC 58.916 47.619 0.00 0.00 0.00 4.79
93 94 2.198827 TGATGCCTTCACATTTCGGT 57.801 45.000 0.00 0.00 0.00 4.69
94 95 3.788333 ATTGATGCCTTCACATTTCGG 57.212 42.857 0.00 0.00 32.84 4.30
95 96 5.639757 TGTAATTGATGCCTTCACATTTCG 58.360 37.500 0.00 0.00 32.84 3.46
96 97 7.464977 GCATTGTAATTGATGCCTTCACATTTC 60.465 37.037 10.45 0.00 42.09 2.17
97 98 6.314400 GCATTGTAATTGATGCCTTCACATTT 59.686 34.615 10.45 0.00 42.09 2.32
98 99 5.813672 GCATTGTAATTGATGCCTTCACATT 59.186 36.000 10.45 0.00 42.09 2.71
99 100 5.353938 GCATTGTAATTGATGCCTTCACAT 58.646 37.500 10.45 0.00 42.09 3.21
100 101 4.746729 GCATTGTAATTGATGCCTTCACA 58.253 39.130 10.45 0.00 42.09 3.58
107 108 4.266029 CGAAACCAGCATTGTAATTGATGC 59.734 41.667 12.60 12.60 46.88 3.91
108 109 5.286797 CACGAAACCAGCATTGTAATTGATG 59.713 40.000 0.00 0.00 0.00 3.07
109 110 5.401550 CACGAAACCAGCATTGTAATTGAT 58.598 37.500 0.00 0.00 0.00 2.57
110 111 4.320861 CCACGAAACCAGCATTGTAATTGA 60.321 41.667 0.00 0.00 0.00 2.57
111 112 3.919804 CCACGAAACCAGCATTGTAATTG 59.080 43.478 0.00 0.00 0.00 2.32
112 113 3.056891 CCCACGAAACCAGCATTGTAATT 60.057 43.478 0.00 0.00 0.00 1.40
113 114 2.491693 CCCACGAAACCAGCATTGTAAT 59.508 45.455 0.00 0.00 0.00 1.89
114 115 1.883275 CCCACGAAACCAGCATTGTAA 59.117 47.619 0.00 0.00 0.00 2.41
115 116 1.202830 ACCCACGAAACCAGCATTGTA 60.203 47.619 0.00 0.00 0.00 2.41
116 117 0.467290 ACCCACGAAACCAGCATTGT 60.467 50.000 0.00 0.00 0.00 2.71
117 118 0.673437 AACCCACGAAACCAGCATTG 59.327 50.000 0.00 0.00 0.00 2.82
118 119 2.279935 TAACCCACGAAACCAGCATT 57.720 45.000 0.00 0.00 0.00 3.56
119 120 2.026262 AGATAACCCACGAAACCAGCAT 60.026 45.455 0.00 0.00 0.00 3.79
120 121 1.349688 AGATAACCCACGAAACCAGCA 59.650 47.619 0.00 0.00 0.00 4.41
121 122 1.737793 CAGATAACCCACGAAACCAGC 59.262 52.381 0.00 0.00 0.00 4.85
122 123 2.027561 TCCAGATAACCCACGAAACCAG 60.028 50.000 0.00 0.00 0.00 4.00
123 124 1.979308 TCCAGATAACCCACGAAACCA 59.021 47.619 0.00 0.00 0.00 3.67
124 125 2.745821 GTTCCAGATAACCCACGAAACC 59.254 50.000 0.00 0.00 0.00 3.27
125 126 2.414138 CGTTCCAGATAACCCACGAAAC 59.586 50.000 0.00 0.00 0.00 2.78
126 127 2.299582 TCGTTCCAGATAACCCACGAAA 59.700 45.455 0.00 0.00 33.94 3.46
127 128 1.894466 TCGTTCCAGATAACCCACGAA 59.106 47.619 0.00 0.00 33.94 3.85
128 129 1.475280 CTCGTTCCAGATAACCCACGA 59.525 52.381 0.00 0.00 35.49 4.35
129 130 1.922570 CTCGTTCCAGATAACCCACG 58.077 55.000 0.00 0.00 0.00 4.94
130 131 1.207329 AGCTCGTTCCAGATAACCCAC 59.793 52.381 0.00 0.00 0.00 4.61
131 132 1.568504 AGCTCGTTCCAGATAACCCA 58.431 50.000 0.00 0.00 0.00 4.51
132 133 2.693267 AAGCTCGTTCCAGATAACCC 57.307 50.000 0.00 0.00 0.00 4.11
133 134 4.024809 GCATTAAGCTCGTTCCAGATAACC 60.025 45.833 0.00 0.00 41.15 2.85
134 135 4.570772 TGCATTAAGCTCGTTCCAGATAAC 59.429 41.667 0.00 0.00 45.94 1.89
135 136 4.765273 TGCATTAAGCTCGTTCCAGATAA 58.235 39.130 0.00 0.00 45.94 1.75
136 137 4.400529 TGCATTAAGCTCGTTCCAGATA 57.599 40.909 0.00 0.00 45.94 1.98
137 138 3.266510 TGCATTAAGCTCGTTCCAGAT 57.733 42.857 0.00 0.00 45.94 2.90
138 139 2.760634 TGCATTAAGCTCGTTCCAGA 57.239 45.000 0.00 0.00 45.94 3.86
139 140 2.096496 CCTTGCATTAAGCTCGTTCCAG 59.904 50.000 0.00 0.00 45.94 3.86
140 141 2.083774 CCTTGCATTAAGCTCGTTCCA 58.916 47.619 0.00 0.00 45.94 3.53
141 142 2.084546 ACCTTGCATTAAGCTCGTTCC 58.915 47.619 0.00 0.00 45.94 3.62
142 143 3.831715 AACCTTGCATTAAGCTCGTTC 57.168 42.857 0.00 0.00 45.94 3.95
143 144 3.364964 CGAAACCTTGCATTAAGCTCGTT 60.365 43.478 0.00 0.00 45.94 3.85
144 145 2.159627 CGAAACCTTGCATTAAGCTCGT 59.840 45.455 0.00 0.00 45.94 4.18
145 146 2.476185 CCGAAACCTTGCATTAAGCTCG 60.476 50.000 0.00 0.00 45.94 5.03
146 147 2.732282 GCCGAAACCTTGCATTAAGCTC 60.732 50.000 0.00 0.00 45.94 4.09
147 148 1.202348 GCCGAAACCTTGCATTAAGCT 59.798 47.619 0.00 0.00 45.94 3.74
148 149 1.067915 TGCCGAAACCTTGCATTAAGC 60.068 47.619 0.00 0.00 45.96 3.09
149 150 3.508744 ATGCCGAAACCTTGCATTAAG 57.491 42.857 0.00 0.00 42.79 1.85
150 151 4.702612 TCTTATGCCGAAACCTTGCATTAA 59.297 37.500 1.19 0.00 42.79 1.40
151 152 4.265893 TCTTATGCCGAAACCTTGCATTA 58.734 39.130 1.19 0.00 42.79 1.90
152 153 3.088532 TCTTATGCCGAAACCTTGCATT 58.911 40.909 1.19 0.00 42.79 3.56
153 154 2.684881 CTCTTATGCCGAAACCTTGCAT 59.315 45.455 0.00 0.00 46.68 3.96
154 155 2.083774 CTCTTATGCCGAAACCTTGCA 58.916 47.619 0.00 0.00 39.68 4.08
155 156 1.202188 GCTCTTATGCCGAAACCTTGC 60.202 52.381 0.00 0.00 0.00 4.01
156 157 1.062587 CGCTCTTATGCCGAAACCTTG 59.937 52.381 0.00 0.00 0.00 3.61
157 158 1.369625 CGCTCTTATGCCGAAACCTT 58.630 50.000 0.00 0.00 0.00 3.50
158 159 1.090052 GCGCTCTTATGCCGAAACCT 61.090 55.000 0.00 0.00 0.00 3.50
159 160 1.352056 GCGCTCTTATGCCGAAACC 59.648 57.895 0.00 0.00 0.00 3.27
160 161 0.657840 ATGCGCTCTTATGCCGAAAC 59.342 50.000 9.73 0.00 0.00 2.78
161 162 0.937304 GATGCGCTCTTATGCCGAAA 59.063 50.000 9.73 0.00 0.00 3.46
162 163 0.179086 TGATGCGCTCTTATGCCGAA 60.179 50.000 9.73 0.00 0.00 4.30
163 164 0.875908 GTGATGCGCTCTTATGCCGA 60.876 55.000 9.73 0.00 0.00 5.54
164 165 1.566563 GTGATGCGCTCTTATGCCG 59.433 57.895 9.73 0.00 0.00 5.69
165 166 1.835483 CGGTGATGCGCTCTTATGCC 61.835 60.000 9.73 0.84 0.00 4.40
166 167 1.566563 CGGTGATGCGCTCTTATGC 59.433 57.895 9.73 0.00 0.00 3.14
167 168 1.153597 TGCGGTGATGCGCTCTTATG 61.154 55.000 9.73 0.00 37.81 1.90
168 169 0.461870 TTGCGGTGATGCGCTCTTAT 60.462 50.000 9.73 0.00 37.81 1.73
169 170 0.672091 TTTGCGGTGATGCGCTCTTA 60.672 50.000 9.73 0.00 37.81 2.10
170 171 1.308069 ATTTGCGGTGATGCGCTCTT 61.308 50.000 9.73 0.00 37.81 2.85
171 172 1.709147 GATTTGCGGTGATGCGCTCT 61.709 55.000 9.73 0.00 37.81 4.09
172 173 1.297893 GATTTGCGGTGATGCGCTC 60.298 57.895 9.73 4.27 37.81 5.03
173 174 2.764314 GGATTTGCGGTGATGCGCT 61.764 57.895 9.73 0.00 37.81 5.92
174 175 1.436195 TAGGATTTGCGGTGATGCGC 61.436 55.000 0.00 0.00 37.81 6.09
175 176 0.304705 GTAGGATTTGCGGTGATGCG 59.695 55.000 0.00 0.00 37.81 4.73
176 177 1.599542 GAGTAGGATTTGCGGTGATGC 59.400 52.381 0.00 0.00 0.00 3.91
177 178 2.905075 TGAGTAGGATTTGCGGTGATG 58.095 47.619 0.00 0.00 0.00 3.07
178 179 3.270877 GTTGAGTAGGATTTGCGGTGAT 58.729 45.455 0.00 0.00 0.00 3.06
179 180 2.037902 TGTTGAGTAGGATTTGCGGTGA 59.962 45.455 0.00 0.00 0.00 4.02
180 181 2.159627 GTGTTGAGTAGGATTTGCGGTG 59.840 50.000 0.00 0.00 0.00 4.94
181 182 2.423577 GTGTTGAGTAGGATTTGCGGT 58.576 47.619 0.00 0.00 0.00 5.68
182 183 1.737793 GGTGTTGAGTAGGATTTGCGG 59.262 52.381 0.00 0.00 0.00 5.69
183 184 2.422597 TGGTGTTGAGTAGGATTTGCG 58.577 47.619 0.00 0.00 0.00 4.85
184 185 4.009675 TGATGGTGTTGAGTAGGATTTGC 58.990 43.478 0.00 0.00 0.00 3.68
185 186 5.007039 CGATGATGGTGTTGAGTAGGATTTG 59.993 44.000 0.00 0.00 0.00 2.32
186 187 5.104941 TCGATGATGGTGTTGAGTAGGATTT 60.105 40.000 0.00 0.00 0.00 2.17
187 188 4.405680 TCGATGATGGTGTTGAGTAGGATT 59.594 41.667 0.00 0.00 0.00 3.01
188 189 3.960755 TCGATGATGGTGTTGAGTAGGAT 59.039 43.478 0.00 0.00 0.00 3.24
189 190 3.361786 TCGATGATGGTGTTGAGTAGGA 58.638 45.455 0.00 0.00 0.00 2.94
190 191 3.801114 TCGATGATGGTGTTGAGTAGG 57.199 47.619 0.00 0.00 0.00 3.18
191 192 4.936891 TCATCGATGATGGTGTTGAGTAG 58.063 43.478 23.99 0.00 40.15 2.57
192 193 4.644685 TCTCATCGATGATGGTGTTGAGTA 59.355 41.667 27.43 1.59 40.15 2.59
193 194 3.448660 TCTCATCGATGATGGTGTTGAGT 59.551 43.478 27.43 0.00 40.15 3.41
194 195 3.801050 GTCTCATCGATGATGGTGTTGAG 59.199 47.826 27.43 13.79 40.15 3.02
195 196 3.195396 TGTCTCATCGATGATGGTGTTGA 59.805 43.478 27.43 16.41 40.15 3.18
196 197 3.524541 TGTCTCATCGATGATGGTGTTG 58.475 45.455 27.43 14.40 40.15 3.33
197 198 3.893326 TGTCTCATCGATGATGGTGTT 57.107 42.857 27.43 0.00 40.15 3.32
198 199 3.893326 TTGTCTCATCGATGATGGTGT 57.107 42.857 27.43 0.00 40.15 4.16
199 200 3.310774 GGTTTGTCTCATCGATGATGGTG 59.689 47.826 27.43 16.15 40.15 4.17
200 201 3.198635 AGGTTTGTCTCATCGATGATGGT 59.801 43.478 27.43 5.16 40.15 3.55
201 202 3.801698 AGGTTTGTCTCATCGATGATGG 58.198 45.455 27.43 17.21 40.15 3.51
202 203 5.448225 CCAAAGGTTTGTCTCATCGATGATG 60.448 44.000 27.43 20.16 37.63 3.07
203 204 4.637534 CCAAAGGTTTGTCTCATCGATGAT 59.362 41.667 27.43 8.27 34.87 2.45
204 205 4.002982 CCAAAGGTTTGTCTCATCGATGA 58.997 43.478 25.80 25.80 36.45 2.92
205 206 3.127548 CCCAAAGGTTTGTCTCATCGATG 59.872 47.826 19.61 19.61 36.45 3.84
206 207 3.347216 CCCAAAGGTTTGTCTCATCGAT 58.653 45.455 0.00 0.00 36.45 3.59
207 208 2.778299 CCCAAAGGTTTGTCTCATCGA 58.222 47.619 1.94 0.00 36.45 3.59
232 233 1.444917 CTAATTTCTTCGCCCCGGCC 61.445 60.000 0.00 0.00 37.98 6.13
233 234 1.444917 CCTAATTTCTTCGCCCCGGC 61.445 60.000 0.00 0.00 37.85 6.13
234 235 0.818040 CCCTAATTTCTTCGCCCCGG 60.818 60.000 0.00 0.00 0.00 5.73
235 236 0.107361 ACCCTAATTTCTTCGCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
236 237 1.212195 AGACCCTAATTTCTTCGCCCC 59.788 52.381 0.00 0.00 0.00 5.80
237 238 2.711978 AGACCCTAATTTCTTCGCCC 57.288 50.000 0.00 0.00 0.00 6.13
238 239 5.386958 AAAAAGACCCTAATTTCTTCGCC 57.613 39.130 0.00 0.00 30.55 5.54
257 258 8.806634 GCATGACAATTATTCTCGCAATAAAAA 58.193 29.630 0.00 0.00 0.00 1.94
258 259 7.434897 GGCATGACAATTATTCTCGCAATAAAA 59.565 33.333 0.00 0.00 0.00 1.52
259 260 6.917477 GGCATGACAATTATTCTCGCAATAAA 59.083 34.615 0.00 0.00 0.00 1.40
260 261 6.437928 GGCATGACAATTATTCTCGCAATAA 58.562 36.000 0.00 2.88 0.00 1.40
261 262 5.334028 CGGCATGACAATTATTCTCGCAATA 60.334 40.000 0.00 0.00 0.00 1.90
262 263 4.555313 CGGCATGACAATTATTCTCGCAAT 60.555 41.667 0.00 0.00 0.00 3.56
263 264 3.242706 CGGCATGACAATTATTCTCGCAA 60.243 43.478 0.00 0.00 0.00 4.85
264 265 2.287644 CGGCATGACAATTATTCTCGCA 59.712 45.455 0.00 0.00 0.00 5.10
265 266 2.543848 TCGGCATGACAATTATTCTCGC 59.456 45.455 0.00 0.00 0.00 5.03
266 267 4.997905 ATCGGCATGACAATTATTCTCG 57.002 40.909 0.00 0.00 0.00 4.04
267 268 6.551385 AGAATCGGCATGACAATTATTCTC 57.449 37.500 0.00 0.00 28.65 2.87
268 269 6.238842 CCAAGAATCGGCATGACAATTATTCT 60.239 38.462 0.00 4.57 34.55 2.40
269 270 5.916883 CCAAGAATCGGCATGACAATTATTC 59.083 40.000 0.00 2.17 0.00 1.75
270 271 5.835257 CCAAGAATCGGCATGACAATTATT 58.165 37.500 0.00 0.00 0.00 1.40
271 272 5.443185 CCAAGAATCGGCATGACAATTAT 57.557 39.130 0.00 0.00 0.00 1.28
272 273 4.898829 CCAAGAATCGGCATGACAATTA 57.101 40.909 0.00 0.00 0.00 1.40
273 274 3.788333 CCAAGAATCGGCATGACAATT 57.212 42.857 0.00 0.00 0.00 2.32
283 284 1.069022 CAACACACAGCCAAGAATCGG 60.069 52.381 0.00 0.00 0.00 4.18
284 285 1.603802 ACAACACACAGCCAAGAATCG 59.396 47.619 0.00 0.00 0.00 3.34
285 286 4.036262 TGTTACAACACACAGCCAAGAATC 59.964 41.667 0.00 0.00 33.17 2.52
286 287 3.951037 TGTTACAACACACAGCCAAGAAT 59.049 39.130 0.00 0.00 33.17 2.40
287 288 3.348119 TGTTACAACACACAGCCAAGAA 58.652 40.909 0.00 0.00 33.17 2.52
288 289 2.992593 TGTTACAACACACAGCCAAGA 58.007 42.857 0.00 0.00 33.17 3.02
289 290 3.773860 TTGTTACAACACACAGCCAAG 57.226 42.857 0.00 0.00 38.92 3.61
290 291 3.508012 AGTTTGTTACAACACACAGCCAA 59.492 39.130 12.48 0.00 40.95 4.52
291 292 3.085533 AGTTTGTTACAACACACAGCCA 58.914 40.909 12.48 0.00 40.95 4.75
292 293 3.377172 AGAGTTTGTTACAACACACAGCC 59.623 43.478 12.48 3.45 40.95 4.85
293 294 4.616181 AGAGTTTGTTACAACACACAGC 57.384 40.909 12.48 5.54 40.95 4.40
294 295 7.061789 GGAAAAAGAGTTTGTTACAACACACAG 59.938 37.037 12.48 0.00 40.95 3.66
295 296 6.864165 GGAAAAAGAGTTTGTTACAACACACA 59.136 34.615 12.48 0.00 40.95 3.72
296 297 7.088272 AGGAAAAAGAGTTTGTTACAACACAC 58.912 34.615 0.00 3.70 39.30 3.82
297 298 7.222000 AGGAAAAAGAGTTTGTTACAACACA 57.778 32.000 0.00 0.00 38.92 3.72
298 299 6.750501 GGAGGAAAAAGAGTTTGTTACAACAC 59.249 38.462 0.00 0.12 38.92 3.32
299 300 6.661805 AGGAGGAAAAAGAGTTTGTTACAACA 59.338 34.615 0.00 0.00 37.08 3.33
300 301 7.096884 AGGAGGAAAAAGAGTTTGTTACAAC 57.903 36.000 0.00 0.00 0.00 3.32
301 302 7.712204 AAGGAGGAAAAAGAGTTTGTTACAA 57.288 32.000 0.00 0.00 0.00 2.41
302 303 8.990163 ATAAGGAGGAAAAAGAGTTTGTTACA 57.010 30.769 0.00 0.00 0.00 2.41
326 327 9.264719 GCAAAAGCTTTGCCTCATATATTAAAT 57.735 29.630 13.54 0.00 39.38 1.40
327 328 8.647143 GCAAAAGCTTTGCCTCATATATTAAA 57.353 30.769 13.54 0.00 39.38 1.52
340 341 3.126686 TGAAACAAAGGCAAAAGCTTTGC 59.873 39.130 13.54 17.13 44.22 3.68
341 342 4.943142 TGAAACAAAGGCAAAAGCTTTG 57.057 36.364 13.54 8.26 42.01 2.77
342 343 5.956068 TTTGAAACAAAGGCAAAAGCTTT 57.044 30.435 5.69 5.69 0.00 3.51
343 344 5.956068 TTTTGAAACAAAGGCAAAAGCTT 57.044 30.435 0.00 0.00 36.80 3.74
344 345 5.956068 TTTTTGAAACAAAGGCAAAAGCT 57.044 30.435 0.00 0.00 41.02 3.74
367 368 8.526978 GCTTCTATTTTTCCTCTCCAGATTTTT 58.473 33.333 0.00 0.00 0.00 1.94
368 369 7.671398 TGCTTCTATTTTTCCTCTCCAGATTTT 59.329 33.333 0.00 0.00 0.00 1.82
369 370 7.177878 TGCTTCTATTTTTCCTCTCCAGATTT 58.822 34.615 0.00 0.00 0.00 2.17
370 371 6.725364 TGCTTCTATTTTTCCTCTCCAGATT 58.275 36.000 0.00 0.00 0.00 2.40
371 372 6.319048 TGCTTCTATTTTTCCTCTCCAGAT 57.681 37.500 0.00 0.00 0.00 2.90
372 373 5.762179 TGCTTCTATTTTTCCTCTCCAGA 57.238 39.130 0.00 0.00 0.00 3.86
373 374 6.183360 CCATTGCTTCTATTTTTCCTCTCCAG 60.183 42.308 0.00 0.00 0.00 3.86
374 375 5.653769 CCATTGCTTCTATTTTTCCTCTCCA 59.346 40.000 0.00 0.00 0.00 3.86
375 376 5.451103 GCCATTGCTTCTATTTTTCCTCTCC 60.451 44.000 0.00 0.00 33.53 3.71
376 377 5.126061 TGCCATTGCTTCTATTTTTCCTCTC 59.874 40.000 0.00 0.00 38.71 3.20
377 378 5.018809 TGCCATTGCTTCTATTTTTCCTCT 58.981 37.500 0.00 0.00 38.71 3.69
378 379 5.105063 GTGCCATTGCTTCTATTTTTCCTC 58.895 41.667 0.00 0.00 38.71 3.71
379 380 4.081476 GGTGCCATTGCTTCTATTTTTCCT 60.081 41.667 0.00 0.00 38.71 3.36
380 381 4.183865 GGTGCCATTGCTTCTATTTTTCC 58.816 43.478 0.00 0.00 38.71 3.13
381 382 4.627035 GTGGTGCCATTGCTTCTATTTTTC 59.373 41.667 0.00 0.00 38.71 2.29
382 383 4.284234 AGTGGTGCCATTGCTTCTATTTTT 59.716 37.500 0.00 0.00 38.71 1.94
383 384 3.834231 AGTGGTGCCATTGCTTCTATTTT 59.166 39.130 0.00 0.00 38.71 1.82
384 385 3.194116 CAGTGGTGCCATTGCTTCTATTT 59.806 43.478 0.82 0.00 38.71 1.40
385 386 2.756760 CAGTGGTGCCATTGCTTCTATT 59.243 45.455 0.82 0.00 38.71 1.73
386 387 2.025981 TCAGTGGTGCCATTGCTTCTAT 60.026 45.455 8.61 0.00 38.71 1.98
387 388 1.350684 TCAGTGGTGCCATTGCTTCTA 59.649 47.619 8.61 0.00 38.71 2.10
388 389 0.111061 TCAGTGGTGCCATTGCTTCT 59.889 50.000 8.61 0.00 38.71 2.85
389 390 0.961019 TTCAGTGGTGCCATTGCTTC 59.039 50.000 8.61 0.00 38.71 3.86
390 391 1.342174 CTTTCAGTGGTGCCATTGCTT 59.658 47.619 8.61 0.00 38.71 3.91
391 392 0.963962 CTTTCAGTGGTGCCATTGCT 59.036 50.000 8.61 0.00 38.71 3.91
392 393 0.668401 GCTTTCAGTGGTGCCATTGC 60.668 55.000 8.61 0.00 34.30 3.56
393 394 0.963962 AGCTTTCAGTGGTGCCATTG 59.036 50.000 7.32 7.32 35.39 2.82
394 395 0.963962 CAGCTTTCAGTGGTGCCATT 59.036 50.000 0.00 0.00 0.00 3.16
395 396 0.111061 TCAGCTTTCAGTGGTGCCAT 59.889 50.000 0.00 0.00 33.48 4.40
396 397 0.535780 CTCAGCTTTCAGTGGTGCCA 60.536 55.000 0.00 0.00 33.48 4.92
397 398 0.250467 TCTCAGCTTTCAGTGGTGCC 60.250 55.000 0.00 0.00 33.48 5.01
398 399 0.871057 GTCTCAGCTTTCAGTGGTGC 59.129 55.000 0.00 0.00 33.48 5.01
399 400 1.202687 TGGTCTCAGCTTTCAGTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
400 401 1.131638 TGGTCTCAGCTTTCAGTGGT 58.868 50.000 0.00 0.00 0.00 4.16
401 402 2.082231 CATGGTCTCAGCTTTCAGTGG 58.918 52.381 0.00 0.00 0.00 4.00
402 403 1.467734 GCATGGTCTCAGCTTTCAGTG 59.532 52.381 0.00 0.00 0.00 3.66
403 404 1.072806 TGCATGGTCTCAGCTTTCAGT 59.927 47.619 0.00 0.00 0.00 3.41
404 405 1.817357 TGCATGGTCTCAGCTTTCAG 58.183 50.000 0.00 0.00 0.00 3.02
405 406 2.089201 CATGCATGGTCTCAGCTTTCA 58.911 47.619 19.40 0.00 0.00 2.69
406 407 1.202268 GCATGCATGGTCTCAGCTTTC 60.202 52.381 27.34 2.90 0.00 2.62
407 408 0.815734 GCATGCATGGTCTCAGCTTT 59.184 50.000 27.34 0.00 0.00 3.51
408 409 0.323087 TGCATGCATGGTCTCAGCTT 60.323 50.000 27.34 0.00 0.00 3.74
409 410 0.106669 ATGCATGCATGGTCTCAGCT 60.107 50.000 31.74 4.69 35.03 4.24
410 411 1.601166 TATGCATGCATGGTCTCAGC 58.399 50.000 37.43 12.10 37.82 4.26
411 412 4.848562 ATTTATGCATGCATGGTCTCAG 57.151 40.909 37.43 0.91 37.82 3.35
412 413 5.277925 CGTTATTTATGCATGCATGGTCTCA 60.278 40.000 37.43 17.97 37.82 3.27
413 414 5.049474 TCGTTATTTATGCATGCATGGTCTC 60.049 40.000 37.43 22.40 37.82 3.36
414 415 4.821260 TCGTTATTTATGCATGCATGGTCT 59.179 37.500 37.43 22.63 37.82 3.85
415 416 5.107109 TCGTTATTTATGCATGCATGGTC 57.893 39.130 37.43 21.08 37.82 4.02
416 417 4.557296 GCTCGTTATTTATGCATGCATGGT 60.557 41.667 37.43 25.37 37.82 3.55
417 418 3.916172 GCTCGTTATTTATGCATGCATGG 59.084 43.478 37.43 19.13 37.82 3.66
418 419 4.790878 AGCTCGTTATTTATGCATGCATG 58.209 39.130 37.43 22.70 37.82 4.06
419 420 5.443185 AAGCTCGTTATTTATGCATGCAT 57.557 34.783 33.92 33.92 40.19 3.96
420 421 4.898829 AAGCTCGTTATTTATGCATGCA 57.101 36.364 25.04 25.04 0.00 3.96
421 422 6.835914 AGATAAGCTCGTTATTTATGCATGC 58.164 36.000 11.82 11.82 30.93 4.06
422 423 9.322776 GAAAGATAAGCTCGTTATTTATGCATG 57.677 33.333 10.16 0.00 30.93 4.06
423 424 8.507249 GGAAAGATAAGCTCGTTATTTATGCAT 58.493 33.333 3.79 3.79 30.93 3.96
424 425 7.307160 CGGAAAGATAAGCTCGTTATTTATGCA 60.307 37.037 0.00 0.00 30.93 3.96
425 426 7.010023 CGGAAAGATAAGCTCGTTATTTATGC 58.990 38.462 0.00 0.00 30.93 3.14
426 427 8.294341 TCGGAAAGATAAGCTCGTTATTTATG 57.706 34.615 0.00 0.00 30.93 1.90
427 428 9.490379 AATCGGAAAGATAAGCTCGTTATTTAT 57.510 29.630 0.00 0.00 38.98 1.40
428 429 8.882415 AATCGGAAAGATAAGCTCGTTATTTA 57.118 30.769 0.00 0.00 38.98 1.40
429 430 7.787725 AATCGGAAAGATAAGCTCGTTATTT 57.212 32.000 0.00 0.00 38.98 1.40
430 431 8.926710 CATAATCGGAAAGATAAGCTCGTTATT 58.073 33.333 0.00 0.00 38.98 1.40
431 432 8.304596 TCATAATCGGAAAGATAAGCTCGTTAT 58.695 33.333 0.00 0.00 38.98 1.89
432 433 7.654568 TCATAATCGGAAAGATAAGCTCGTTA 58.345 34.615 0.00 0.00 38.98 3.18
433 434 6.513180 TCATAATCGGAAAGATAAGCTCGTT 58.487 36.000 0.00 0.00 38.98 3.85
434 435 6.085555 TCATAATCGGAAAGATAAGCTCGT 57.914 37.500 0.00 0.00 38.98 4.18
435 436 7.588143 AATCATAATCGGAAAGATAAGCTCG 57.412 36.000 0.00 0.00 38.98 5.03
438 439 9.107367 CGAAAAATCATAATCGGAAAGATAAGC 57.893 33.333 0.00 0.00 38.98 3.09
439 440 9.107367 GCGAAAAATCATAATCGGAAAGATAAG 57.893 33.333 0.00 0.00 38.98 1.73
440 441 7.796660 CGCGAAAAATCATAATCGGAAAGATAA 59.203 33.333 0.00 0.00 38.98 1.75
441 442 7.042321 ACGCGAAAAATCATAATCGGAAAGATA 60.042 33.333 15.93 0.00 38.98 1.98
442 443 6.136071 CGCGAAAAATCATAATCGGAAAGAT 58.864 36.000 0.00 0.00 42.43 2.40
443 444 5.064198 ACGCGAAAAATCATAATCGGAAAGA 59.936 36.000 15.93 0.00 35.91 2.52
444 445 5.263185 ACGCGAAAAATCATAATCGGAAAG 58.737 37.500 15.93 0.00 35.91 2.62
445 446 5.224562 ACGCGAAAAATCATAATCGGAAA 57.775 34.783 15.93 0.00 35.91 3.13
446 447 4.868450 ACGCGAAAAATCATAATCGGAA 57.132 36.364 15.93 0.00 35.91 4.30
447 448 5.692654 TGATACGCGAAAAATCATAATCGGA 59.307 36.000 15.93 0.00 35.91 4.55
448 449 5.783654 GTGATACGCGAAAAATCATAATCGG 59.216 40.000 15.93 0.00 35.91 4.18
449 450 6.351749 TGTGATACGCGAAAAATCATAATCG 58.648 36.000 15.93 0.00 38.28 3.34
450 451 8.461398 GTTTGTGATACGCGAAAAATCATAATC 58.539 33.333 15.93 14.31 32.88 1.75
451 452 7.965655 TGTTTGTGATACGCGAAAAATCATAAT 59.034 29.630 15.93 0.00 32.88 1.28
452 453 7.269511 GTGTTTGTGATACGCGAAAAATCATAA 59.730 33.333 15.93 16.41 32.60 1.90
453 454 6.739100 GTGTTTGTGATACGCGAAAAATCATA 59.261 34.615 15.93 11.49 32.60 2.15
454 455 5.567534 GTGTTTGTGATACGCGAAAAATCAT 59.432 36.000 15.93 0.00 32.60 2.45
455 456 4.907010 GTGTTTGTGATACGCGAAAAATCA 59.093 37.500 15.93 13.24 0.00 2.57
456 457 5.144359 AGTGTTTGTGATACGCGAAAAATC 58.856 37.500 15.93 10.66 0.00 2.17
457 458 5.103290 AGTGTTTGTGATACGCGAAAAAT 57.897 34.783 15.93 0.00 0.00 1.82
458 459 4.539509 AGTGTTTGTGATACGCGAAAAA 57.460 36.364 15.93 0.00 0.00 1.94
462 463 3.564235 AGTAGTGTTTGTGATACGCGA 57.436 42.857 15.93 0.00 0.00 5.87
471 472 5.251601 GCTAGCTAGCTAGTAGTGTTTGT 57.748 43.478 39.05 10.93 45.67 2.83
514 515 9.806203 TCGAATTTTCTTATCCACGAGTAATAA 57.194 29.630 0.00 0.00 0.00 1.40
547 548 0.390492 TGGCAGCTACCTCATCATCG 59.610 55.000 4.19 0.00 0.00 3.84
548 549 1.542108 GGTGGCAGCTACCTCATCATC 60.542 57.143 20.51 0.00 35.30 2.92
549 550 0.471617 GGTGGCAGCTACCTCATCAT 59.528 55.000 20.51 0.00 35.30 2.45
579 582 1.789464 CCGTGAGCGAGATCTTAATGC 59.211 52.381 0.00 0.00 41.33 3.56
951 962 3.284617 AGAAACCAACCGCAAACTAACT 58.715 40.909 0.00 0.00 0.00 2.24
984 995 2.605030 GCCATCGATCTAGCTAAGCTG 58.395 52.381 0.00 0.00 40.10 4.24
1452 1471 0.555769 TGTTGGACTTGCCCCTCTTT 59.444 50.000 0.00 0.00 34.97 2.52
1504 1523 1.203441 ATGCAGCTGGAACTCCTGGA 61.203 55.000 13.45 0.00 35.73 3.86
1587 1606 1.283793 CACACAGCCAGGCGAAAAG 59.716 57.895 5.55 0.00 0.00 2.27
1602 1621 3.594775 CTTGCGTTGGCCTGCACA 61.595 61.111 15.87 1.46 41.57 4.57
1603 1622 3.259425 CTCTTGCGTTGGCCTGCAC 62.259 63.158 15.87 4.05 41.57 4.57
1604 1623 2.979676 CTCTTGCGTTGGCCTGCA 60.980 61.111 12.86 12.86 39.81 4.41
1751 1863 6.585695 TCGTCCTGAACTAGTACTGATTTT 57.414 37.500 5.39 0.00 0.00 1.82
1752 1864 6.585695 TTCGTCCTGAACTAGTACTGATTT 57.414 37.500 5.39 0.00 0.00 2.17
1766 1878 3.724374 AGACAATTTTCGTTCGTCCTGA 58.276 40.909 0.00 0.00 0.00 3.86
1767 1879 4.432503 CGTAGACAATTTTCGTTCGTCCTG 60.433 45.833 0.00 0.00 0.00 3.86
1771 1883 3.798337 ACACGTAGACAATTTTCGTTCGT 59.202 39.130 0.00 6.15 32.47 3.85
1776 2080 4.031426 GGCTCTACACGTAGACAATTTTCG 59.969 45.833 2.74 0.00 37.28 3.46
1781 2085 4.674623 CGAAAGGCTCTACACGTAGACAAT 60.675 45.833 2.74 0.00 37.28 2.71
1820 2125 2.673368 AGCCGAGCATAGAAACGAAAAG 59.327 45.455 0.00 0.00 0.00 2.27
1825 2130 0.652592 CCAAGCCGAGCATAGAAACG 59.347 55.000 0.00 0.00 0.00 3.60
1832 2137 0.108138 GTAGACACCAAGCCGAGCAT 60.108 55.000 0.00 0.00 0.00 3.79
1833 2138 1.185618 AGTAGACACCAAGCCGAGCA 61.186 55.000 0.00 0.00 0.00 4.26
1852 2157 8.799367 GGGTGGTATATATATACATGCATCGTA 58.201 37.037 26.66 3.79 40.16 3.43
1854 2159 7.814587 CAGGGTGGTATATATATACATGCATCG 59.185 40.741 26.66 11.05 40.16 3.84
1856 2161 8.567198 ACAGGGTGGTATATATATACATGCAT 57.433 34.615 26.66 12.02 40.16 3.96
1857 2162 7.844269 AGACAGGGTGGTATATATATACATGCA 59.156 37.037 26.66 16.51 40.16 3.96
1858 2163 8.251383 AGACAGGGTGGTATATATATACATGC 57.749 38.462 26.66 17.75 40.16 4.06
1861 2166 9.610104 ACAAAGACAGGGTGGTATATATATACA 57.390 33.333 26.66 14.60 40.16 2.29
1895 2200 8.638873 CCATAATGACTACTCTAACACATGGTA 58.361 37.037 0.00 0.00 0.00 3.25
1937 2242 5.190330 GGGTAGGGGTATAAAACTGACTTGA 59.810 44.000 0.00 0.00 0.00 3.02
2028 2333 6.879276 ATCTGATACCATGAAAGCTGAATG 57.121 37.500 0.00 0.00 0.00 2.67
2109 2420 4.189188 GCGCTCGAAGTAGCCGGA 62.189 66.667 5.05 0.00 39.43 5.14
2306 2617 4.892345 AGATCGAAGAGATGTCTCCAATGA 59.108 41.667 6.41 1.35 43.63 2.57



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.