Multiple sequence alignment - TraesCS3D01G141800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G141800 chr3D 100.000 2482 0 0 1 2482 103810186 103807705 0.000000e+00 4584
1 TraesCS3D01G141800 chr3D 99.866 1488 2 0 672 2159 558743731 558742244 0.000000e+00 2737
2 TraesCS3D01G141800 chr3D 80.645 248 33 12 2219 2462 48840586 48840350 7.050000e-41 178
3 TraesCS3D01G141800 chr3D 86.486 148 20 0 4 151 103672529 103672382 1.980000e-36 163
4 TraesCS3D01G141800 chr3D 85.811 148 21 0 4 151 103778335 103778188 9.190000e-35 158
5 TraesCS3D01G141800 chr6D 100.000 1488 0 0 672 2159 9960174 9961661 0.000000e+00 2748
6 TraesCS3D01G141800 chr6D 99.666 1497 3 2 672 2168 450086764 450085270 0.000000e+00 2736
7 TraesCS3D01G141800 chr5D 100.000 1488 0 0 672 2159 214356276 214357763 0.000000e+00 2748
8 TraesCS3D01G141800 chr5D 99.866 1488 2 0 672 2159 58662936 58661449 0.000000e+00 2737
9 TraesCS3D01G141800 chr5D 99.866 1488 2 0 672 2159 548974565 548976052 0.000000e+00 2737
10 TraesCS3D01G141800 chr2D 99.866 1488 2 0 672 2159 9253385 9254872 0.000000e+00 2737
11 TraesCS3D01G141800 chr2D 99.866 1488 2 0 672 2159 30789513 30791000 0.000000e+00 2737
12 TraesCS3D01G141800 chr2D 77.037 270 41 18 2226 2481 590023562 590023300 4.310000e-28 135
13 TraesCS3D01G141800 chrUn 99.799 1489 3 0 672 2160 126794705 126796193 0.000000e+00 2734
14 TraesCS3D01G141800 chr3A 93.418 395 23 2 277 668 552537349 552537743 1.280000e-162 582
15 TraesCS3D01G141800 chr3A 94.615 260 12 1 3 262 552537111 552537368 3.840000e-108 401
16 TraesCS3D01G141800 chr3A 91.912 136 11 0 4 139 552559144 552559279 9.060000e-45 191
17 TraesCS3D01G141800 chr3A 79.134 254 39 9 2225 2476 27705441 27705200 1.980000e-36 163
18 TraesCS3D01G141800 chr1D 86.957 230 22 7 2225 2451 396151122 396151346 4.100000e-63 252
19 TraesCS3D01G141800 chr4A 85.477 241 27 7 2225 2461 565325572 565325808 6.860000e-61 244
20 TraesCS3D01G141800 chr4A 75.309 243 43 16 2226 2462 464886666 464886897 1.570000e-17 100
21 TraesCS3D01G141800 chr7A 81.679 262 33 10 2225 2482 643550930 643551180 1.160000e-48 204
22 TraesCS3D01G141800 chr4D 81.124 249 33 9 2225 2471 472513461 472513697 1.170000e-43 187
23 TraesCS3D01G141800 chr5B 80.162 247 34 10 2227 2471 18350234 18350001 1.180000e-38 171
24 TraesCS3D01G141800 chr6B 80.247 243 30 16 2225 2461 46663169 46663399 1.530000e-37 167
25 TraesCS3D01G141800 chr3B 85.616 146 19 2 4 147 154425108 154424963 4.280000e-33 152
26 TraesCS3D01G141800 chr5A 79.556 225 25 14 2224 2444 475329025 475329232 9.250000e-30 141
27 TraesCS3D01G141800 chr5A 86.179 123 12 5 2362 2480 475329258 475329379 7.210000e-26 128
28 TraesCS3D01G141800 chr1A 87.755 98 11 1 2366 2462 587921880 587921977 2.020000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G141800 chr3D 103807705 103810186 2481 True 4584.0 4584 100.0000 1 2482 1 chr3D.!!$R4 2481
1 TraesCS3D01G141800 chr3D 558742244 558743731 1487 True 2737.0 2737 99.8660 672 2159 1 chr3D.!!$R5 1487
2 TraesCS3D01G141800 chr6D 9960174 9961661 1487 False 2748.0 2748 100.0000 672 2159 1 chr6D.!!$F1 1487
3 TraesCS3D01G141800 chr6D 450085270 450086764 1494 True 2736.0 2736 99.6660 672 2168 1 chr6D.!!$R1 1496
4 TraesCS3D01G141800 chr5D 214356276 214357763 1487 False 2748.0 2748 100.0000 672 2159 1 chr5D.!!$F1 1487
5 TraesCS3D01G141800 chr5D 58661449 58662936 1487 True 2737.0 2737 99.8660 672 2159 1 chr5D.!!$R1 1487
6 TraesCS3D01G141800 chr5D 548974565 548976052 1487 False 2737.0 2737 99.8660 672 2159 1 chr5D.!!$F2 1487
7 TraesCS3D01G141800 chr2D 9253385 9254872 1487 False 2737.0 2737 99.8660 672 2159 1 chr2D.!!$F1 1487
8 TraesCS3D01G141800 chr2D 30789513 30791000 1487 False 2737.0 2737 99.8660 672 2159 1 chr2D.!!$F2 1487
9 TraesCS3D01G141800 chrUn 126794705 126796193 1488 False 2734.0 2734 99.7990 672 2160 1 chrUn.!!$F1 1488
10 TraesCS3D01G141800 chr3A 552537111 552537743 632 False 491.5 582 94.0165 3 668 2 chr3A.!!$F2 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 1.003545 CATTGAATCACGCGATGGGTC 60.004 52.381 15.93 8.98 30.13 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 2169 2.945668 GAGCAGAAATTAATCGGCCAGT 59.054 45.455 2.24 0.0 40.77 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 1.003545 CATTGAATCACGCGATGGGTC 60.004 52.381 15.93 8.98 30.13 4.46
127 128 2.351276 GATGGGTCGGCAGTTGGT 59.649 61.111 0.00 0.00 0.00 3.67
130 131 2.203294 GGGTCGGCAGTTGGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
148 149 4.808895 GGTTGTTTTGATTGGTTCCAACTC 59.191 41.667 6.41 6.72 33.18 3.01
149 150 4.664150 TGTTTTGATTGGTTCCAACTCC 57.336 40.909 6.41 0.86 0.00 3.85
165 166 3.340814 ACTCCATTCATTCGCAACTCT 57.659 42.857 0.00 0.00 0.00 3.24
185 186 8.482429 CAACTCTCAGATGTTGCATTTTAAAAC 58.518 33.333 1.97 0.00 37.36 2.43
221 222 6.582677 TTATATTTCCCTTTGGTGTGTGTG 57.417 37.500 0.00 0.00 0.00 3.82
222 223 2.223803 TTTCCCTTTGGTGTGTGTGT 57.776 45.000 0.00 0.00 0.00 3.72
231 232 5.394663 CCTTTGGTGTGTGTGTTAATTTGGA 60.395 40.000 0.00 0.00 0.00 3.53
237 238 2.033550 TGTGTGTTAATTTGGACGGTGC 59.966 45.455 0.00 0.00 0.00 5.01
261 262 9.155975 TGCTGTAGAAATAGAATTGAAGAACTC 57.844 33.333 0.00 0.00 0.00 3.01
262 263 9.377312 GCTGTAGAAATAGAATTGAAGAACTCT 57.623 33.333 0.00 0.00 0.00 3.24
293 294 8.655651 TTTTTGCGGAAAATAATTGAAGAACT 57.344 26.923 15.83 0.00 32.44 3.01
310 311 1.935933 ACTCAACGGCCGTAATCATC 58.064 50.000 34.44 0.00 0.00 2.92
334 335 3.681593 TGAATGTGTACAAGGCCTAACC 58.318 45.455 5.16 0.00 39.61 2.85
346 347 4.399483 AGGCCTAACCGAATCCTATCTA 57.601 45.455 1.29 0.00 46.52 1.98
351 352 5.411781 CCTAACCGAATCCTATCTACATGC 58.588 45.833 0.00 0.00 0.00 4.06
379 380 7.858879 ACGGTTTCAAGACAATTACACAATTAC 59.141 33.333 0.00 0.00 32.96 1.89
380 381 7.059033 CGGTTTCAAGACAATTACACAATTACG 59.941 37.037 0.00 0.00 32.96 3.18
406 409 4.200874 AGAGTTCGTCTAGGACACATAGG 58.799 47.826 0.00 0.00 31.71 2.57
458 461 7.381766 TGATGTCATGTGTTTCTAAATCCTG 57.618 36.000 0.00 0.00 0.00 3.86
463 466 4.365514 TGTGTTTCTAAATCCTGCTCCA 57.634 40.909 0.00 0.00 0.00 3.86
493 496 5.106277 TGTCGTTATTTGTTGTTGGTTGTCA 60.106 36.000 0.00 0.00 0.00 3.58
502 505 1.680735 TGTTGGTTGTCACTTGGATGC 59.319 47.619 0.00 0.00 0.00 3.91
513 516 1.910671 ACTTGGATGCGGTTACCCTTA 59.089 47.619 0.00 0.00 0.00 2.69
521 524 6.608002 TGGATGCGGTTACCCTTAATTTTTAT 59.392 34.615 0.00 0.00 0.00 1.40
528 531 9.917129 CGGTTACCCTTAATTTTTATGAAAACT 57.083 29.630 0.00 0.00 37.56 2.66
551 554 1.188219 TCACACACCAGGGAGCTCTC 61.188 60.000 14.64 10.30 0.00 3.20
554 557 4.504916 CACCAGGGAGCTCTCGCG 62.505 72.222 14.64 7.57 45.79 5.87
574 577 9.181805 TCTCGCGTATTCATAATAGAAGAAAAG 57.818 33.333 5.77 0.00 0.00 2.27
606 609 3.902467 AGTTTATAAGGGAGATCCGACCC 59.098 47.826 11.00 11.00 45.88 4.46
627 630 2.425668 CGAAAACCACAAGAAGGGTGTT 59.574 45.455 0.00 0.00 37.32 3.32
668 671 3.959535 AATCGACCGGTTAACCAGTTA 57.040 42.857 24.14 11.63 35.14 2.24
669 672 3.959535 ATCGACCGGTTAACCAGTTAA 57.040 42.857 24.14 11.30 35.14 2.01
670 673 3.959535 TCGACCGGTTAACCAGTTAAT 57.040 42.857 24.14 2.46 37.37 1.40
2183 2186 6.436843 CAGTTAACTGGCCGATTAATTTCT 57.563 37.500 25.19 4.98 40.20 2.52
2184 2187 6.258160 CAGTTAACTGGCCGATTAATTTCTG 58.742 40.000 25.19 11.59 40.20 3.02
2185 2188 3.782889 AACTGGCCGATTAATTTCTGC 57.217 42.857 0.00 0.00 0.00 4.26
2186 2189 3.004752 ACTGGCCGATTAATTTCTGCT 57.995 42.857 0.00 0.00 0.00 4.24
2187 2190 2.945668 ACTGGCCGATTAATTTCTGCTC 59.054 45.455 0.00 0.00 0.00 4.26
2188 2191 2.291741 CTGGCCGATTAATTTCTGCTCC 59.708 50.000 0.00 0.00 0.00 4.70
2189 2192 2.297701 GGCCGATTAATTTCTGCTCCA 58.702 47.619 0.00 0.00 0.00 3.86
2190 2193 2.687935 GGCCGATTAATTTCTGCTCCAA 59.312 45.455 0.00 0.00 0.00 3.53
2191 2194 3.130340 GGCCGATTAATTTCTGCTCCAAA 59.870 43.478 0.00 0.00 0.00 3.28
2192 2195 4.354587 GCCGATTAATTTCTGCTCCAAAG 58.645 43.478 0.00 0.00 0.00 2.77
2193 2196 4.734695 GCCGATTAATTTCTGCTCCAAAGG 60.735 45.833 0.00 0.00 0.00 3.11
2194 2197 4.399303 CCGATTAATTTCTGCTCCAAAGGT 59.601 41.667 0.00 0.00 0.00 3.50
2195 2198 5.449177 CCGATTAATTTCTGCTCCAAAGGTC 60.449 44.000 0.00 0.00 0.00 3.85
2196 2199 5.123820 CGATTAATTTCTGCTCCAAAGGTCA 59.876 40.000 0.00 0.00 0.00 4.02
2197 2200 5.705609 TTAATTTCTGCTCCAAAGGTCAC 57.294 39.130 0.00 0.00 0.00 3.67
2198 2201 1.981256 TTTCTGCTCCAAAGGTCACC 58.019 50.000 0.00 0.00 0.00 4.02
2199 2202 0.110486 TTCTGCTCCAAAGGTCACCC 59.890 55.000 0.00 0.00 0.00 4.61
2200 2203 1.059584 TCTGCTCCAAAGGTCACCCA 61.060 55.000 0.00 0.00 0.00 4.51
2201 2204 0.607489 CTGCTCCAAAGGTCACCCAG 60.607 60.000 0.00 0.00 0.00 4.45
2202 2205 1.352622 TGCTCCAAAGGTCACCCAGT 61.353 55.000 0.00 0.00 0.00 4.00
2203 2206 0.690762 GCTCCAAAGGTCACCCAGTA 59.309 55.000 0.00 0.00 0.00 2.74
2204 2207 1.073284 GCTCCAAAGGTCACCCAGTAA 59.927 52.381 0.00 0.00 0.00 2.24
2205 2208 2.779506 CTCCAAAGGTCACCCAGTAAC 58.220 52.381 0.00 0.00 0.00 2.50
2206 2209 2.372172 CTCCAAAGGTCACCCAGTAACT 59.628 50.000 0.00 0.00 0.00 2.24
2207 2210 2.370849 TCCAAAGGTCACCCAGTAACTC 59.629 50.000 0.00 0.00 0.00 3.01
2208 2211 2.105821 CCAAAGGTCACCCAGTAACTCA 59.894 50.000 0.00 0.00 0.00 3.41
2209 2212 3.434453 CCAAAGGTCACCCAGTAACTCAA 60.434 47.826 0.00 0.00 0.00 3.02
2210 2213 4.204012 CAAAGGTCACCCAGTAACTCAAA 58.796 43.478 0.00 0.00 0.00 2.69
2211 2214 3.487120 AGGTCACCCAGTAACTCAAAC 57.513 47.619 0.00 0.00 0.00 2.93
2212 2215 2.775384 AGGTCACCCAGTAACTCAAACA 59.225 45.455 0.00 0.00 0.00 2.83
2213 2216 3.139077 GGTCACCCAGTAACTCAAACAG 58.861 50.000 0.00 0.00 0.00 3.16
2214 2217 3.181458 GGTCACCCAGTAACTCAAACAGA 60.181 47.826 0.00 0.00 0.00 3.41
2215 2218 4.448210 GTCACCCAGTAACTCAAACAGAA 58.552 43.478 0.00 0.00 0.00 3.02
2216 2219 4.511826 GTCACCCAGTAACTCAAACAGAAG 59.488 45.833 0.00 0.00 0.00 2.85
2217 2220 4.407621 TCACCCAGTAACTCAAACAGAAGA 59.592 41.667 0.00 0.00 0.00 2.87
2218 2221 4.752101 CACCCAGTAACTCAAACAGAAGAG 59.248 45.833 0.00 0.00 37.87 2.85
2219 2222 4.654262 ACCCAGTAACTCAAACAGAAGAGA 59.346 41.667 0.00 0.00 35.83 3.10
2220 2223 5.308237 ACCCAGTAACTCAAACAGAAGAGAT 59.692 40.000 0.00 0.00 35.83 2.75
2221 2224 6.497259 ACCCAGTAACTCAAACAGAAGAGATA 59.503 38.462 0.00 0.00 35.83 1.98
2222 2225 6.814146 CCCAGTAACTCAAACAGAAGAGATAC 59.186 42.308 0.00 0.00 39.20 2.24
2223 2226 6.528423 CCAGTAACTCAAACAGAAGAGATACG 59.472 42.308 0.00 0.00 41.91 3.06
2224 2227 7.085116 CAGTAACTCAAACAGAAGAGATACGT 58.915 38.462 0.00 0.00 41.91 3.57
2225 2228 7.595502 CAGTAACTCAAACAGAAGAGATACGTT 59.404 37.037 0.00 0.00 41.91 3.99
2226 2229 8.142551 AGTAACTCAAACAGAAGAGATACGTTT 58.857 33.333 0.00 0.00 41.91 3.60
2227 2230 7.787725 AACTCAAACAGAAGAGATACGTTTT 57.212 32.000 0.00 0.00 35.83 2.43
2228 2231 7.787725 ACTCAAACAGAAGAGATACGTTTTT 57.212 32.000 0.00 0.00 35.83 1.94
2244 2247 3.192799 TTTTTCAACCGGGCTCACA 57.807 47.368 6.32 0.00 0.00 3.58
2245 2248 0.741915 TTTTTCAACCGGGCTCACAC 59.258 50.000 6.32 0.00 0.00 3.82
2246 2249 1.104577 TTTTCAACCGGGCTCACACC 61.105 55.000 6.32 0.00 0.00 4.16
2253 2256 4.097218 GGGCTCACACCCCTTTTC 57.903 61.111 0.00 0.00 45.00 2.29
2254 2257 1.152830 GGGCTCACACCCCTTTTCA 59.847 57.895 0.00 0.00 45.00 2.69
2255 2258 0.251787 GGGCTCACACCCCTTTTCAT 60.252 55.000 0.00 0.00 45.00 2.57
2256 2259 1.632589 GGCTCACACCCCTTTTCATT 58.367 50.000 0.00 0.00 0.00 2.57
2257 2260 2.556559 GGGCTCACACCCCTTTTCATTA 60.557 50.000 0.00 0.00 45.00 1.90
2258 2261 3.161866 GGCTCACACCCCTTTTCATTAA 58.838 45.455 0.00 0.00 0.00 1.40
2259 2262 3.769300 GGCTCACACCCCTTTTCATTAAT 59.231 43.478 0.00 0.00 0.00 1.40
2260 2263 4.222810 GGCTCACACCCCTTTTCATTAATT 59.777 41.667 0.00 0.00 0.00 1.40
2261 2264 5.279960 GGCTCACACCCCTTTTCATTAATTT 60.280 40.000 0.00 0.00 0.00 1.82
2262 2265 6.230472 GCTCACACCCCTTTTCATTAATTTT 58.770 36.000 0.00 0.00 0.00 1.82
2263 2266 6.147656 GCTCACACCCCTTTTCATTAATTTTG 59.852 38.462 0.00 0.00 0.00 2.44
2264 2267 5.994668 TCACACCCCTTTTCATTAATTTTGC 59.005 36.000 0.00 0.00 0.00 3.68
2265 2268 5.762218 CACACCCCTTTTCATTAATTTTGCA 59.238 36.000 0.00 0.00 0.00 4.08
2266 2269 6.261826 CACACCCCTTTTCATTAATTTTGCAA 59.738 34.615 0.00 0.00 0.00 4.08
2267 2270 7.003482 ACACCCCTTTTCATTAATTTTGCAAT 58.997 30.769 0.00 0.00 0.00 3.56
2268 2271 7.174772 ACACCCCTTTTCATTAATTTTGCAATC 59.825 33.333 0.00 0.00 0.00 2.67
2269 2272 7.174599 CACCCCTTTTCATTAATTTTGCAATCA 59.825 33.333 0.00 0.00 0.00 2.57
2270 2273 7.723172 ACCCCTTTTCATTAATTTTGCAATCAA 59.277 29.630 0.00 0.00 0.00 2.57
2271 2274 8.022550 CCCCTTTTCATTAATTTTGCAATCAAC 58.977 33.333 0.00 0.00 30.75 3.18
2272 2275 7.745594 CCCTTTTCATTAATTTTGCAATCAACG 59.254 33.333 0.00 0.00 30.75 4.10
2273 2276 8.494347 CCTTTTCATTAATTTTGCAATCAACGA 58.506 29.630 0.00 0.00 30.75 3.85
2274 2277 9.861138 CTTTTCATTAATTTTGCAATCAACGAA 57.139 25.926 0.00 0.00 30.75 3.85
2278 2281 9.808808 TCATTAATTTTGCAATCAACGAAAATG 57.191 25.926 0.00 3.68 30.36 2.32
2279 2282 8.568861 CATTAATTTTGCAATCAACGAAAATGC 58.431 29.630 0.00 0.00 37.52 3.56
2280 2283 5.670149 ATTTTGCAATCAACGAAAATGCA 57.330 30.435 0.00 0.00 44.54 3.96
2281 2284 5.670149 TTTTGCAATCAACGAAAATGCAT 57.330 30.435 0.00 0.00 45.41 3.96
2282 2285 4.907188 TTGCAATCAACGAAAATGCATC 57.093 36.364 0.00 0.00 45.41 3.91
2283 2286 3.910648 TGCAATCAACGAAAATGCATCA 58.089 36.364 0.00 0.00 41.67 3.07
2284 2287 3.921630 TGCAATCAACGAAAATGCATCAG 59.078 39.130 0.00 0.00 41.67 2.90
2285 2288 3.922240 GCAATCAACGAAAATGCATCAGT 59.078 39.130 0.00 0.00 37.00 3.41
2286 2289 4.030977 GCAATCAACGAAAATGCATCAGTC 59.969 41.667 0.00 0.00 37.00 3.51
2287 2290 5.396484 CAATCAACGAAAATGCATCAGTCT 58.604 37.500 0.00 0.00 0.00 3.24
2288 2291 4.408993 TCAACGAAAATGCATCAGTCTG 57.591 40.909 0.00 0.00 0.00 3.51
2289 2292 3.814842 TCAACGAAAATGCATCAGTCTGT 59.185 39.130 0.00 0.00 0.00 3.41
2290 2293 4.083855 TCAACGAAAATGCATCAGTCTGTC 60.084 41.667 0.00 0.00 0.00 3.51
2291 2294 3.668447 ACGAAAATGCATCAGTCTGTCT 58.332 40.909 0.00 0.00 0.00 3.41
2292 2295 3.434641 ACGAAAATGCATCAGTCTGTCTG 59.565 43.478 0.00 0.63 44.85 3.51
2293 2296 3.181513 CGAAAATGCATCAGTCTGTCTGG 60.182 47.826 0.00 0.00 43.76 3.86
2294 2297 3.708403 AAATGCATCAGTCTGTCTGGA 57.292 42.857 0.00 1.11 43.76 3.86
2295 2298 2.983907 ATGCATCAGTCTGTCTGGAG 57.016 50.000 0.00 0.00 43.76 3.86
2296 2299 1.637338 TGCATCAGTCTGTCTGGAGT 58.363 50.000 0.00 0.00 43.76 3.85
2297 2300 2.807676 TGCATCAGTCTGTCTGGAGTA 58.192 47.619 0.00 0.00 43.76 2.59
2298 2301 3.369175 TGCATCAGTCTGTCTGGAGTAT 58.631 45.455 0.00 0.00 43.76 2.12
2299 2302 3.771479 TGCATCAGTCTGTCTGGAGTATT 59.229 43.478 0.00 0.00 43.76 1.89
2300 2303 4.956075 TGCATCAGTCTGTCTGGAGTATTA 59.044 41.667 0.00 0.00 43.76 0.98
2301 2304 5.068329 TGCATCAGTCTGTCTGGAGTATTAG 59.932 44.000 0.00 0.00 43.76 1.73
2302 2305 5.068460 GCATCAGTCTGTCTGGAGTATTAGT 59.932 44.000 0.00 0.00 43.76 2.24
2303 2306 6.406400 GCATCAGTCTGTCTGGAGTATTAGTT 60.406 42.308 0.00 0.00 43.76 2.24
2304 2307 6.761099 TCAGTCTGTCTGGAGTATTAGTTC 57.239 41.667 0.00 0.00 43.76 3.01
2305 2308 6.246163 TCAGTCTGTCTGGAGTATTAGTTCA 58.754 40.000 0.00 0.00 43.76 3.18
2306 2309 6.892456 TCAGTCTGTCTGGAGTATTAGTTCAT 59.108 38.462 0.00 0.00 43.76 2.57
2307 2310 7.067615 TCAGTCTGTCTGGAGTATTAGTTCATC 59.932 40.741 0.00 0.00 43.76 2.92
2308 2311 6.892456 AGTCTGTCTGGAGTATTAGTTCATCA 59.108 38.462 0.00 0.00 0.00 3.07
2309 2312 6.975772 GTCTGTCTGGAGTATTAGTTCATCAC 59.024 42.308 0.00 0.00 0.00 3.06
2310 2313 6.663523 TCTGTCTGGAGTATTAGTTCATCACA 59.336 38.462 0.00 0.00 0.00 3.58
2311 2314 7.178451 TCTGTCTGGAGTATTAGTTCATCACAA 59.822 37.037 0.00 0.00 0.00 3.33
2312 2315 7.097192 TGTCTGGAGTATTAGTTCATCACAAC 58.903 38.462 0.00 0.00 0.00 3.32
2313 2316 7.039011 TGTCTGGAGTATTAGTTCATCACAACT 60.039 37.037 0.00 0.00 39.94 3.16
2314 2317 7.819900 GTCTGGAGTATTAGTTCATCACAACTT 59.180 37.037 0.00 0.00 37.75 2.66
2315 2318 8.375506 TCTGGAGTATTAGTTCATCACAACTTT 58.624 33.333 0.00 0.00 37.75 2.66
2316 2319 8.918202 TGGAGTATTAGTTCATCACAACTTTT 57.082 30.769 0.00 0.00 37.75 2.27
2317 2320 8.999431 TGGAGTATTAGTTCATCACAACTTTTC 58.001 33.333 0.00 0.00 37.75 2.29
2318 2321 8.999431 GGAGTATTAGTTCATCACAACTTTTCA 58.001 33.333 0.00 0.00 37.75 2.69
2319 2322 9.813080 GAGTATTAGTTCATCACAACTTTTCAC 57.187 33.333 0.00 0.00 37.75 3.18
2320 2323 9.561069 AGTATTAGTTCATCACAACTTTTCACT 57.439 29.630 0.00 0.00 37.75 3.41
2324 2327 7.865706 AGTTCATCACAACTTTTCACTTACT 57.134 32.000 0.00 0.00 32.34 2.24
2325 2328 8.958119 AGTTCATCACAACTTTTCACTTACTA 57.042 30.769 0.00 0.00 32.34 1.82
2326 2329 9.391006 AGTTCATCACAACTTTTCACTTACTAA 57.609 29.630 0.00 0.00 32.34 2.24
2327 2330 9.651718 GTTCATCACAACTTTTCACTTACTAAG 57.348 33.333 0.00 0.00 0.00 2.18
2328 2331 7.861630 TCATCACAACTTTTCACTTACTAAGC 58.138 34.615 0.00 0.00 0.00 3.09
2329 2332 7.497579 TCATCACAACTTTTCACTTACTAAGCA 59.502 33.333 0.00 0.00 0.00 3.91
2330 2333 7.011828 TCACAACTTTTCACTTACTAAGCAC 57.988 36.000 0.00 0.00 0.00 4.40
2331 2334 5.901884 CACAACTTTTCACTTACTAAGCACG 59.098 40.000 0.00 0.00 0.00 5.34
2332 2335 5.813672 ACAACTTTTCACTTACTAAGCACGA 59.186 36.000 0.00 0.00 0.00 4.35
2333 2336 6.314400 ACAACTTTTCACTTACTAAGCACGAA 59.686 34.615 0.00 0.00 0.00 3.85
2334 2337 6.526566 ACTTTTCACTTACTAAGCACGAAG 57.473 37.500 0.00 0.05 0.00 3.79
2335 2338 4.985044 TTTCACTTACTAAGCACGAAGC 57.015 40.909 0.00 0.00 46.19 3.86
2346 2349 2.526304 GCACGAAGCCATATAGGACA 57.474 50.000 0.00 0.00 41.22 4.02
2347 2350 3.045601 GCACGAAGCCATATAGGACAT 57.954 47.619 0.00 0.00 41.22 3.06
2348 2351 2.996621 GCACGAAGCCATATAGGACATC 59.003 50.000 0.00 0.00 41.22 3.06
2349 2352 3.306364 GCACGAAGCCATATAGGACATCT 60.306 47.826 0.00 0.00 41.22 2.90
2350 2353 4.082190 GCACGAAGCCATATAGGACATCTA 60.082 45.833 0.00 0.00 41.22 1.98
2351 2354 5.403246 CACGAAGCCATATAGGACATCTAC 58.597 45.833 0.00 0.00 41.22 2.59
2352 2355 4.463186 ACGAAGCCATATAGGACATCTACC 59.537 45.833 0.00 0.00 41.22 3.18
2353 2356 4.462834 CGAAGCCATATAGGACATCTACCA 59.537 45.833 0.00 0.00 41.22 3.25
2354 2357 5.393569 CGAAGCCATATAGGACATCTACCAG 60.394 48.000 0.00 0.00 41.22 4.00
2355 2358 3.772025 AGCCATATAGGACATCTACCAGC 59.228 47.826 0.00 0.00 41.22 4.85
2356 2359 3.515502 GCCATATAGGACATCTACCAGCA 59.484 47.826 0.00 0.00 41.22 4.41
2357 2360 4.621747 GCCATATAGGACATCTACCAGCAC 60.622 50.000 0.00 0.00 41.22 4.40
2358 2361 4.528206 CCATATAGGACATCTACCAGCACA 59.472 45.833 0.00 0.00 41.22 4.57
2359 2362 5.012046 CCATATAGGACATCTACCAGCACAA 59.988 44.000 0.00 0.00 41.22 3.33
2360 2363 6.464322 CCATATAGGACATCTACCAGCACAAA 60.464 42.308 0.00 0.00 41.22 2.83
2361 2364 3.788227 AGGACATCTACCAGCACAAAA 57.212 42.857 0.00 0.00 0.00 2.44
2362 2365 3.679389 AGGACATCTACCAGCACAAAAG 58.321 45.455 0.00 0.00 0.00 2.27
2363 2366 2.749621 GGACATCTACCAGCACAAAAGG 59.250 50.000 0.00 0.00 0.00 3.11
2364 2367 2.749621 GACATCTACCAGCACAAAAGGG 59.250 50.000 0.00 0.00 0.00 3.95
2365 2368 2.375174 ACATCTACCAGCACAAAAGGGA 59.625 45.455 0.00 0.00 0.00 4.20
2366 2369 2.561478 TCTACCAGCACAAAAGGGAC 57.439 50.000 0.00 0.00 0.00 4.46
2368 2371 2.154462 CTACCAGCACAAAAGGGACTG 58.846 52.381 0.00 0.00 40.86 3.51
2369 2372 0.550914 ACCAGCACAAAAGGGACTGA 59.449 50.000 0.00 0.00 40.86 3.41
2370 2373 1.064017 ACCAGCACAAAAGGGACTGAA 60.064 47.619 0.00 0.00 40.86 3.02
2371 2374 2.031120 CCAGCACAAAAGGGACTGAAA 58.969 47.619 0.00 0.00 40.86 2.69
2372 2375 2.035066 CCAGCACAAAAGGGACTGAAAG 59.965 50.000 0.00 0.00 40.86 2.62
2373 2376 2.035066 CAGCACAAAAGGGACTGAAAGG 59.965 50.000 0.00 0.00 40.86 3.11
2374 2377 1.341209 GCACAAAAGGGACTGAAAGGG 59.659 52.381 0.00 0.00 40.86 3.95
2375 2378 1.963515 CACAAAAGGGACTGAAAGGGG 59.036 52.381 0.00 0.00 40.86 4.79
2376 2379 1.133167 ACAAAAGGGACTGAAAGGGGG 60.133 52.381 0.00 0.00 40.86 5.40
2391 2394 4.329545 GGGGAGCGAGTTGGTGCA 62.330 66.667 3.32 0.00 38.29 4.57
2392 2395 2.045926 GGGAGCGAGTTGGTGCAT 60.046 61.111 3.32 0.00 38.29 3.96
2393 2396 2.109126 GGGAGCGAGTTGGTGCATC 61.109 63.158 3.32 0.00 38.29 3.91
2394 2397 2.456119 GGAGCGAGTTGGTGCATCG 61.456 63.158 2.33 2.33 36.30 3.84
2395 2398 1.738099 GAGCGAGTTGGTGCATCGT 60.738 57.895 8.31 0.00 38.66 3.73
2396 2399 1.687494 GAGCGAGTTGGTGCATCGTC 61.687 60.000 8.31 1.76 38.66 4.20
2397 2400 2.027073 GCGAGTTGGTGCATCGTCA 61.027 57.895 8.31 0.00 38.66 4.35
2398 2401 1.959899 GCGAGTTGGTGCATCGTCAG 61.960 60.000 8.31 0.00 38.66 3.51
2399 2402 1.354337 CGAGTTGGTGCATCGTCAGG 61.354 60.000 0.00 0.00 0.00 3.86
2400 2403 0.037326 GAGTTGGTGCATCGTCAGGA 60.037 55.000 0.00 0.00 0.00 3.86
2401 2404 0.396435 AGTTGGTGCATCGTCAGGAA 59.604 50.000 0.00 0.00 0.00 3.36
2402 2405 1.202758 AGTTGGTGCATCGTCAGGAAA 60.203 47.619 0.00 0.00 0.00 3.13
2403 2406 1.069227 GTTGGTGCATCGTCAGGAAAC 60.069 52.381 0.00 0.00 0.00 2.78
2404 2407 0.605319 TGGTGCATCGTCAGGAAACC 60.605 55.000 0.00 0.00 0.00 3.27
2405 2408 1.305930 GGTGCATCGTCAGGAAACCC 61.306 60.000 0.00 0.00 0.00 4.11
2406 2409 0.605319 GTGCATCGTCAGGAAACCCA 60.605 55.000 0.00 0.00 0.00 4.51
2407 2410 0.605319 TGCATCGTCAGGAAACCCAC 60.605 55.000 0.00 0.00 0.00 4.61
2408 2411 0.321653 GCATCGTCAGGAAACCCACT 60.322 55.000 0.00 0.00 0.00 4.00
2409 2412 1.442769 CATCGTCAGGAAACCCACTG 58.557 55.000 0.00 0.00 36.07 3.66
2410 2413 0.321653 ATCGTCAGGAAACCCACTGC 60.322 55.000 0.00 0.00 34.76 4.40
2411 2414 1.227823 CGTCAGGAAACCCACTGCA 60.228 57.895 0.00 0.00 34.76 4.41
2412 2415 0.606401 CGTCAGGAAACCCACTGCAT 60.606 55.000 0.00 0.00 34.76 3.96
2413 2416 0.883833 GTCAGGAAACCCACTGCATG 59.116 55.000 0.00 0.00 34.76 4.06
2414 2417 0.770499 TCAGGAAACCCACTGCATGA 59.230 50.000 0.00 0.00 34.76 3.07
2415 2418 1.355381 TCAGGAAACCCACTGCATGAT 59.645 47.619 0.00 0.00 34.76 2.45
2416 2419 1.475280 CAGGAAACCCACTGCATGATG 59.525 52.381 0.00 0.00 0.00 3.07
2417 2420 1.355381 AGGAAACCCACTGCATGATGA 59.645 47.619 0.00 0.00 0.00 2.92
2418 2421 1.747355 GGAAACCCACTGCATGATGAG 59.253 52.381 0.00 0.00 0.00 2.90
2419 2422 1.133790 GAAACCCACTGCATGATGAGC 59.866 52.381 0.00 0.00 0.00 4.26
2420 2423 0.682209 AACCCACTGCATGATGAGCC 60.682 55.000 0.00 0.00 0.00 4.70
2421 2424 1.226542 CCCACTGCATGATGAGCCT 59.773 57.895 0.00 0.00 0.00 4.58
2422 2425 1.101635 CCCACTGCATGATGAGCCTG 61.102 60.000 0.00 0.00 0.00 4.85
2423 2426 0.107361 CCACTGCATGATGAGCCTGA 60.107 55.000 0.00 0.00 0.00 3.86
2424 2427 1.680860 CCACTGCATGATGAGCCTGAA 60.681 52.381 0.00 0.00 0.00 3.02
2425 2428 2.089201 CACTGCATGATGAGCCTGAAA 58.911 47.619 0.00 0.00 0.00 2.69
2426 2429 2.089980 ACTGCATGATGAGCCTGAAAC 58.910 47.619 0.00 0.00 0.00 2.78
2427 2430 1.063616 CTGCATGATGAGCCTGAAACG 59.936 52.381 0.00 0.00 0.00 3.60
2428 2431 0.379669 GCATGATGAGCCTGAAACGG 59.620 55.000 0.00 0.00 0.00 4.44
2429 2432 2.013563 GCATGATGAGCCTGAAACGGA 61.014 52.381 0.00 0.00 0.00 4.69
2430 2433 1.667724 CATGATGAGCCTGAAACGGAC 59.332 52.381 0.00 0.00 0.00 4.79
2431 2434 0.036388 TGATGAGCCTGAAACGGACC 60.036 55.000 0.00 0.00 0.00 4.46
2432 2435 0.036388 GATGAGCCTGAAACGGACCA 60.036 55.000 0.00 0.00 0.00 4.02
2433 2436 0.620556 ATGAGCCTGAAACGGACCAT 59.379 50.000 0.00 0.00 0.00 3.55
2434 2437 0.036388 TGAGCCTGAAACGGACCATC 60.036 55.000 0.00 0.00 0.00 3.51
2435 2438 0.036388 GAGCCTGAAACGGACCATCA 60.036 55.000 0.00 0.00 0.00 3.07
2436 2439 0.036010 AGCCTGAAACGGACCATCAG 60.036 55.000 10.55 10.55 40.17 2.90
2437 2440 1.648467 GCCTGAAACGGACCATCAGC 61.648 60.000 11.62 5.86 39.36 4.26
2438 2441 0.036010 CCTGAAACGGACCATCAGCT 60.036 55.000 11.62 0.00 39.36 4.24
2439 2442 1.207089 CCTGAAACGGACCATCAGCTA 59.793 52.381 11.62 0.00 39.36 3.32
2440 2443 2.158900 CCTGAAACGGACCATCAGCTAT 60.159 50.000 11.62 0.00 39.36 2.97
2441 2444 2.868583 CTGAAACGGACCATCAGCTATG 59.131 50.000 6.12 0.00 34.72 2.23
2458 2461 3.417224 GGGCGAAAACCCGACGAC 61.417 66.667 0.00 0.00 40.98 4.34
2459 2462 2.662527 GGCGAAAACCCGACGACA 60.663 61.111 0.00 0.00 35.00 4.35
2460 2463 2.547798 GCGAAAACCCGACGACAC 59.452 61.111 0.00 0.00 0.00 3.67
2461 2464 1.952635 GCGAAAACCCGACGACACT 60.953 57.895 0.00 0.00 0.00 3.55
2462 2465 1.850640 CGAAAACCCGACGACACTG 59.149 57.895 0.00 0.00 0.00 3.66
2463 2466 1.568025 GAAAACCCGACGACACTGC 59.432 57.895 0.00 0.00 0.00 4.40
2464 2467 0.878961 GAAAACCCGACGACACTGCT 60.879 55.000 0.00 0.00 0.00 4.24
2465 2468 0.390124 AAAACCCGACGACACTGCTA 59.610 50.000 0.00 0.00 0.00 3.49
2466 2469 0.390124 AAACCCGACGACACTGCTAA 59.610 50.000 0.00 0.00 0.00 3.09
2467 2470 0.319297 AACCCGACGACACTGCTAAC 60.319 55.000 0.00 0.00 0.00 2.34
2468 2471 1.445582 CCCGACGACACTGCTAACC 60.446 63.158 0.00 0.00 0.00 2.85
2469 2472 1.287815 CCGACGACACTGCTAACCA 59.712 57.895 0.00 0.00 0.00 3.67
2470 2473 1.007336 CCGACGACACTGCTAACCAC 61.007 60.000 0.00 0.00 0.00 4.16
2471 2474 0.039437 CGACGACACTGCTAACCACT 60.039 55.000 0.00 0.00 0.00 4.00
2472 2475 1.419374 GACGACACTGCTAACCACTG 58.581 55.000 0.00 0.00 0.00 3.66
2473 2476 0.600255 ACGACACTGCTAACCACTGC 60.600 55.000 0.00 0.00 0.00 4.40
2474 2477 0.319900 CGACACTGCTAACCACTGCT 60.320 55.000 0.00 0.00 0.00 4.24
2475 2478 1.433534 GACACTGCTAACCACTGCTC 58.566 55.000 0.00 0.00 0.00 4.26
2476 2479 0.758734 ACACTGCTAACCACTGCTCA 59.241 50.000 0.00 0.00 0.00 4.26
2477 2480 1.140852 ACACTGCTAACCACTGCTCAA 59.859 47.619 0.00 0.00 0.00 3.02
2478 2481 2.221169 CACTGCTAACCACTGCTCAAA 58.779 47.619 0.00 0.00 0.00 2.69
2479 2482 2.031682 CACTGCTAACCACTGCTCAAAC 60.032 50.000 0.00 0.00 0.00 2.93
2480 2483 2.221169 CTGCTAACCACTGCTCAAACA 58.779 47.619 0.00 0.00 0.00 2.83
2481 2484 2.816087 CTGCTAACCACTGCTCAAACAT 59.184 45.455 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.779569 CGAACTTGAAGTAGTGCGGT 58.220 50.000 0.00 0.00 42.31 5.68
117 118 2.507339 ATCAAAACAACCAACTGCCG 57.493 45.000 0.00 0.00 0.00 5.69
118 119 2.871633 CCAATCAAAACAACCAACTGCC 59.128 45.455 0.00 0.00 0.00 4.85
125 126 4.765273 AGTTGGAACCAATCAAAACAACC 58.235 39.130 9.53 0.00 37.91 3.77
127 128 4.467795 TGGAGTTGGAACCAATCAAAACAA 59.532 37.500 9.53 0.00 38.28 2.83
130 131 5.365025 TGAATGGAGTTGGAACCAATCAAAA 59.635 36.000 9.53 0.00 41.29 2.44
148 149 3.264947 TCTGAGAGTTGCGAATGAATGG 58.735 45.455 0.00 0.00 0.00 3.16
149 150 4.331992 ACATCTGAGAGTTGCGAATGAATG 59.668 41.667 0.00 0.00 0.00 2.67
192 193 7.069826 ACACACCAAAGGGAAATATAATGGATG 59.930 37.037 0.00 0.00 38.05 3.51
221 222 3.998341 TCTACAGCACCGTCCAAATTAAC 59.002 43.478 0.00 0.00 0.00 2.01
222 223 4.274602 TCTACAGCACCGTCCAAATTAA 57.725 40.909 0.00 0.00 0.00 1.40
231 232 5.730550 TCAATTCTATTTCTACAGCACCGT 58.269 37.500 0.00 0.00 0.00 4.83
268 269 8.655651 AGTTCTTCAATTATTTTCCGCAAAAA 57.344 26.923 0.00 0.00 40.98 1.94
269 270 7.923344 TGAGTTCTTCAATTATTTTCCGCAAAA 59.077 29.630 0.00 0.00 32.54 2.44
270 271 7.429633 TGAGTTCTTCAATTATTTTCCGCAAA 58.570 30.769 0.00 0.00 31.34 3.68
271 272 6.976088 TGAGTTCTTCAATTATTTTCCGCAA 58.024 32.000 0.00 0.00 31.34 4.85
272 273 6.567687 TGAGTTCTTCAATTATTTTCCGCA 57.432 33.333 0.00 0.00 31.34 5.69
273 274 6.032460 CGTTGAGTTCTTCAATTATTTTCCGC 59.968 38.462 0.00 0.00 46.85 5.54
274 275 6.523201 CCGTTGAGTTCTTCAATTATTTTCCG 59.477 38.462 0.00 0.00 46.85 4.30
275 276 6.308041 GCCGTTGAGTTCTTCAATTATTTTCC 59.692 38.462 0.00 0.00 46.85 3.13
276 277 6.308041 GGCCGTTGAGTTCTTCAATTATTTTC 59.692 38.462 0.00 0.00 46.85 2.29
277 278 6.156519 GGCCGTTGAGTTCTTCAATTATTTT 58.843 36.000 0.00 0.00 46.85 1.82
278 279 5.619086 CGGCCGTTGAGTTCTTCAATTATTT 60.619 40.000 19.50 0.00 46.85 1.40
279 280 4.142687 CGGCCGTTGAGTTCTTCAATTATT 60.143 41.667 19.50 0.00 46.85 1.40
280 281 3.374058 CGGCCGTTGAGTTCTTCAATTAT 59.626 43.478 19.50 0.00 46.85 1.28
281 282 2.739913 CGGCCGTTGAGTTCTTCAATTA 59.260 45.455 19.50 0.00 46.85 1.40
282 283 1.535462 CGGCCGTTGAGTTCTTCAATT 59.465 47.619 19.50 0.00 46.85 2.32
283 284 1.156736 CGGCCGTTGAGTTCTTCAAT 58.843 50.000 19.50 0.00 46.85 2.57
284 285 0.179067 ACGGCCGTTGAGTTCTTCAA 60.179 50.000 28.70 0.00 43.40 2.69
285 286 0.675083 TACGGCCGTTGAGTTCTTCA 59.325 50.000 38.94 11.67 0.00 3.02
286 287 1.787012 TTACGGCCGTTGAGTTCTTC 58.213 50.000 38.94 0.00 0.00 2.87
287 288 2.289195 TGATTACGGCCGTTGAGTTCTT 60.289 45.455 38.94 10.68 0.00 2.52
288 289 1.274167 TGATTACGGCCGTTGAGTTCT 59.726 47.619 38.94 11.55 0.00 3.01
289 290 1.717194 TGATTACGGCCGTTGAGTTC 58.283 50.000 38.94 23.93 0.00 3.01
290 291 2.277084 GATGATTACGGCCGTTGAGTT 58.723 47.619 38.94 19.10 0.00 3.01
291 292 1.801395 CGATGATTACGGCCGTTGAGT 60.801 52.381 38.94 17.02 0.00 3.41
292 293 0.852777 CGATGATTACGGCCGTTGAG 59.147 55.000 38.94 16.73 0.00 3.02
293 294 0.456628 TCGATGATTACGGCCGTTGA 59.543 50.000 38.94 25.66 0.00 3.18
310 311 2.632377 AGGCCTTGTACACATTCATCG 58.368 47.619 0.00 0.00 0.00 3.84
334 335 3.245797 CGTGGCATGTAGATAGGATTCG 58.754 50.000 0.00 0.00 0.00 3.34
346 347 0.951558 GTCTTGAAACCGTGGCATGT 59.048 50.000 5.89 0.00 0.00 3.21
351 352 4.035792 TGTGTAATTGTCTTGAAACCGTGG 59.964 41.667 0.00 0.00 0.00 4.94
379 380 3.005554 TGTCCTAGACGAACTCTAACCG 58.994 50.000 0.00 0.00 34.95 4.44
380 381 3.755378 TGTGTCCTAGACGAACTCTAACC 59.245 47.826 0.00 0.00 34.95 2.85
406 409 8.851960 TTAGATGTGACGTAATTATGTCTCAC 57.148 34.615 30.54 23.84 43.89 3.51
440 443 4.701651 TGGAGCAGGATTTAGAAACACATG 59.298 41.667 0.00 0.00 0.00 3.21
458 461 0.172803 ATAACGACACGAGGTGGAGC 59.827 55.000 0.42 0.00 37.94 4.70
463 466 3.460103 ACAACAAATAACGACACGAGGT 58.540 40.909 0.00 0.00 0.00 3.85
528 531 1.745890 CTCCCTGGTGTGTGACGAA 59.254 57.895 0.00 0.00 0.00 3.85
580 583 6.664384 GGTCGGATCTCCCTTATAAACTAGAT 59.336 42.308 0.00 3.84 0.00 1.98
606 609 2.021457 ACACCCTTCTTGTGGTTTTCG 58.979 47.619 0.00 0.00 38.05 3.46
627 630 6.318648 CGATTTCTTGAACATGGATCCCTAAA 59.681 38.462 9.90 0.00 0.00 1.85
668 671 4.752879 CCGTGCCGTCCGTCCATT 62.753 66.667 0.00 0.00 0.00 3.16
2160 2163 6.258160 CAGAAATTAATCGGCCAGTTAACTG 58.742 40.000 25.79 25.79 43.40 3.16
2161 2164 5.163652 GCAGAAATTAATCGGCCAGTTAACT 60.164 40.000 2.24 1.12 34.92 2.24
2162 2165 5.034797 GCAGAAATTAATCGGCCAGTTAAC 58.965 41.667 2.24 0.00 34.92 2.01
2163 2166 4.947388 AGCAGAAATTAATCGGCCAGTTAA 59.053 37.500 2.24 7.80 40.77 2.01
2164 2167 4.523083 AGCAGAAATTAATCGGCCAGTTA 58.477 39.130 2.24 0.00 40.77 2.24
2165 2168 3.356290 AGCAGAAATTAATCGGCCAGTT 58.644 40.909 2.24 0.00 40.77 3.16
2166 2169 2.945668 GAGCAGAAATTAATCGGCCAGT 59.054 45.455 2.24 0.00 40.77 4.00
2167 2170 2.291741 GGAGCAGAAATTAATCGGCCAG 59.708 50.000 2.24 0.00 40.77 4.85
2168 2171 2.297701 GGAGCAGAAATTAATCGGCCA 58.702 47.619 2.24 0.00 40.77 5.36
2169 2172 2.297701 TGGAGCAGAAATTAATCGGCC 58.702 47.619 0.00 0.00 40.77 6.13
2170 2173 4.354587 CTTTGGAGCAGAAATTAATCGGC 58.645 43.478 0.00 0.00 40.28 5.54
2171 2174 4.399303 ACCTTTGGAGCAGAAATTAATCGG 59.601 41.667 0.00 0.00 0.00 4.18
2172 2175 5.123820 TGACCTTTGGAGCAGAAATTAATCG 59.876 40.000 0.00 0.00 0.00 3.34
2173 2176 6.325596 GTGACCTTTGGAGCAGAAATTAATC 58.674 40.000 0.00 0.00 0.00 1.75
2174 2177 5.185828 GGTGACCTTTGGAGCAGAAATTAAT 59.814 40.000 0.00 0.00 0.00 1.40
2175 2178 4.522789 GGTGACCTTTGGAGCAGAAATTAA 59.477 41.667 0.00 0.00 0.00 1.40
2176 2179 4.079253 GGTGACCTTTGGAGCAGAAATTA 58.921 43.478 0.00 0.00 0.00 1.40
2177 2180 2.893489 GGTGACCTTTGGAGCAGAAATT 59.107 45.455 0.00 0.00 0.00 1.82
2178 2181 2.519013 GGTGACCTTTGGAGCAGAAAT 58.481 47.619 0.00 0.00 0.00 2.17
2179 2182 1.981256 GGTGACCTTTGGAGCAGAAA 58.019 50.000 0.00 0.00 0.00 2.52
2180 2183 3.725754 GGTGACCTTTGGAGCAGAA 57.274 52.632 0.00 0.00 0.00 3.02
2193 2196 4.067972 TCTGTTTGAGTTACTGGGTGAC 57.932 45.455 0.00 0.00 0.00 3.67
2194 2197 4.407621 TCTTCTGTTTGAGTTACTGGGTGA 59.592 41.667 0.00 0.00 0.00 4.02
2195 2198 4.703897 TCTTCTGTTTGAGTTACTGGGTG 58.296 43.478 0.00 0.00 0.00 4.61
2196 2199 4.654262 TCTCTTCTGTTTGAGTTACTGGGT 59.346 41.667 0.00 0.00 0.00 4.51
2197 2200 5.215252 TCTCTTCTGTTTGAGTTACTGGG 57.785 43.478 0.00 0.00 0.00 4.45
2198 2201 6.528423 CGTATCTCTTCTGTTTGAGTTACTGG 59.472 42.308 0.00 0.00 35.23 4.00
2199 2202 7.085116 ACGTATCTCTTCTGTTTGAGTTACTG 58.915 38.462 0.00 0.00 35.23 2.74
2200 2203 7.216973 ACGTATCTCTTCTGTTTGAGTTACT 57.783 36.000 0.00 0.00 35.23 2.24
2201 2204 7.870588 AACGTATCTCTTCTGTTTGAGTTAC 57.129 36.000 0.00 0.00 34.60 2.50
2202 2205 8.882415 AAAACGTATCTCTTCTGTTTGAGTTA 57.118 30.769 0.00 0.00 33.42 2.24
2203 2206 7.787725 AAAACGTATCTCTTCTGTTTGAGTT 57.212 32.000 0.00 0.00 33.42 3.01
2204 2207 7.787725 AAAAACGTATCTCTTCTGTTTGAGT 57.212 32.000 0.00 0.00 33.42 3.41
2226 2229 0.741915 GTGTGAGCCCGGTTGAAAAA 59.258 50.000 0.00 0.00 0.00 1.94
2227 2230 1.104577 GGTGTGAGCCCGGTTGAAAA 61.105 55.000 0.00 0.00 0.00 2.29
2228 2231 1.527380 GGTGTGAGCCCGGTTGAAA 60.527 57.895 0.00 0.00 0.00 2.69
2229 2232 2.112297 GGTGTGAGCCCGGTTGAA 59.888 61.111 0.00 0.00 0.00 2.69
2230 2233 3.948719 GGGTGTGAGCCCGGTTGA 61.949 66.667 0.00 0.00 39.17 3.18
2237 2240 1.632589 AATGAAAAGGGGTGTGAGCC 58.367 50.000 0.00 0.00 34.31 4.70
2238 2241 5.405935 AATTAATGAAAAGGGGTGTGAGC 57.594 39.130 0.00 0.00 0.00 4.26
2239 2242 6.147656 GCAAAATTAATGAAAAGGGGTGTGAG 59.852 38.462 0.00 0.00 0.00 3.51
2240 2243 5.994668 GCAAAATTAATGAAAAGGGGTGTGA 59.005 36.000 0.00 0.00 0.00 3.58
2241 2244 5.762218 TGCAAAATTAATGAAAAGGGGTGTG 59.238 36.000 0.00 0.00 0.00 3.82
2242 2245 5.934781 TGCAAAATTAATGAAAAGGGGTGT 58.065 33.333 0.00 0.00 0.00 4.16
2243 2246 6.874288 TTGCAAAATTAATGAAAAGGGGTG 57.126 33.333 0.00 0.00 0.00 4.61
2244 2247 7.230027 TGATTGCAAAATTAATGAAAAGGGGT 58.770 30.769 1.71 0.00 0.00 4.95
2245 2248 7.684937 TGATTGCAAAATTAATGAAAAGGGG 57.315 32.000 1.71 0.00 0.00 4.79
2246 2249 7.745594 CGTTGATTGCAAAATTAATGAAAAGGG 59.254 33.333 1.71 0.00 35.42 3.95
2247 2250 8.494347 TCGTTGATTGCAAAATTAATGAAAAGG 58.506 29.630 1.71 0.00 35.42 3.11
2248 2251 9.861138 TTCGTTGATTGCAAAATTAATGAAAAG 57.139 25.926 1.71 0.00 33.52 2.27
2252 2255 9.808808 CATTTTCGTTGATTGCAAAATTAATGA 57.191 25.926 1.71 4.84 35.42 2.57
2253 2256 8.568861 GCATTTTCGTTGATTGCAAAATTAATG 58.431 29.630 1.71 7.08 35.42 1.90
2254 2257 8.288208 TGCATTTTCGTTGATTGCAAAATTAAT 58.712 25.926 1.71 0.00 40.11 1.40
2255 2258 7.633621 TGCATTTTCGTTGATTGCAAAATTAA 58.366 26.923 1.71 0.00 40.11 1.40
2256 2259 7.182361 TGCATTTTCGTTGATTGCAAAATTA 57.818 28.000 1.71 0.00 40.11 1.40
2257 2260 6.057627 TGCATTTTCGTTGATTGCAAAATT 57.942 29.167 1.71 0.00 40.11 1.82
2258 2261 5.670149 TGCATTTTCGTTGATTGCAAAAT 57.330 30.435 1.71 0.00 40.11 1.82
2259 2262 5.235831 TGATGCATTTTCGTTGATTGCAAAA 59.764 32.000 1.71 0.00 45.41 2.44
2260 2263 4.748600 TGATGCATTTTCGTTGATTGCAAA 59.251 33.333 1.71 0.00 45.41 3.68
2261 2264 4.304939 TGATGCATTTTCGTTGATTGCAA 58.695 34.783 0.00 0.00 45.41 4.08
2262 2265 3.910648 TGATGCATTTTCGTTGATTGCA 58.089 36.364 0.00 0.00 46.22 4.08
2263 2266 3.922240 ACTGATGCATTTTCGTTGATTGC 59.078 39.130 0.00 0.00 0.00 3.56
2264 2267 5.285370 CAGACTGATGCATTTTCGTTGATTG 59.715 40.000 0.00 0.00 0.00 2.67
2265 2268 5.048504 ACAGACTGATGCATTTTCGTTGATT 60.049 36.000 10.08 0.00 0.00 2.57
2266 2269 4.456911 ACAGACTGATGCATTTTCGTTGAT 59.543 37.500 10.08 0.00 0.00 2.57
2267 2270 3.814842 ACAGACTGATGCATTTTCGTTGA 59.185 39.130 10.08 0.00 0.00 3.18
2268 2271 4.083643 AGACAGACTGATGCATTTTCGTTG 60.084 41.667 10.08 0.00 0.00 4.10
2269 2272 4.067896 AGACAGACTGATGCATTTTCGTT 58.932 39.130 10.08 0.00 0.00 3.85
2270 2273 3.668447 AGACAGACTGATGCATTTTCGT 58.332 40.909 10.08 0.00 0.00 3.85
2282 2285 6.516739 TGAACTAATACTCCAGACAGACTG 57.483 41.667 0.00 0.00 45.36 3.51
2283 2286 6.892456 TGATGAACTAATACTCCAGACAGACT 59.108 38.462 0.00 0.00 0.00 3.24
2284 2287 6.975772 GTGATGAACTAATACTCCAGACAGAC 59.024 42.308 0.00 0.00 0.00 3.51
2285 2288 6.663523 TGTGATGAACTAATACTCCAGACAGA 59.336 38.462 0.00 0.00 0.00 3.41
2286 2289 6.867550 TGTGATGAACTAATACTCCAGACAG 58.132 40.000 0.00 0.00 0.00 3.51
2287 2290 6.850752 TGTGATGAACTAATACTCCAGACA 57.149 37.500 0.00 0.00 0.00 3.41
2288 2291 7.324178 AGTTGTGATGAACTAATACTCCAGAC 58.676 38.462 0.00 0.00 34.29 3.51
2289 2292 7.482169 AGTTGTGATGAACTAATACTCCAGA 57.518 36.000 0.00 0.00 34.29 3.86
2290 2293 8.553459 AAAGTTGTGATGAACTAATACTCCAG 57.447 34.615 0.00 0.00 35.01 3.86
2291 2294 8.918202 AAAAGTTGTGATGAACTAATACTCCA 57.082 30.769 0.00 0.00 35.01 3.86
2292 2295 8.999431 TGAAAAGTTGTGATGAACTAATACTCC 58.001 33.333 0.00 0.00 35.01 3.85
2293 2296 9.813080 GTGAAAAGTTGTGATGAACTAATACTC 57.187 33.333 0.00 0.00 35.01 2.59
2294 2297 9.561069 AGTGAAAAGTTGTGATGAACTAATACT 57.439 29.630 0.00 0.00 35.01 2.12
2298 2301 9.391006 AGTAAGTGAAAAGTTGTGATGAACTAA 57.609 29.630 0.00 0.00 35.01 2.24
2299 2302 8.958119 AGTAAGTGAAAAGTTGTGATGAACTA 57.042 30.769 0.00 0.00 35.01 2.24
2300 2303 7.865706 AGTAAGTGAAAAGTTGTGATGAACT 57.134 32.000 0.00 0.00 37.81 3.01
2301 2304 9.651718 CTTAGTAAGTGAAAAGTTGTGATGAAC 57.348 33.333 1.40 0.00 0.00 3.18
2302 2305 8.342634 GCTTAGTAAGTGAAAAGTTGTGATGAA 58.657 33.333 11.51 0.00 0.00 2.57
2303 2306 7.497579 TGCTTAGTAAGTGAAAAGTTGTGATGA 59.502 33.333 11.51 0.00 0.00 2.92
2304 2307 7.587757 GTGCTTAGTAAGTGAAAAGTTGTGATG 59.412 37.037 11.51 0.00 0.00 3.07
2305 2308 7.518370 CGTGCTTAGTAAGTGAAAAGTTGTGAT 60.518 37.037 11.51 0.00 0.00 3.06
2306 2309 6.237996 CGTGCTTAGTAAGTGAAAAGTTGTGA 60.238 38.462 11.51 0.00 0.00 3.58
2307 2310 5.901884 CGTGCTTAGTAAGTGAAAAGTTGTG 59.098 40.000 11.51 0.00 0.00 3.33
2308 2311 5.813672 TCGTGCTTAGTAAGTGAAAAGTTGT 59.186 36.000 11.51 0.00 0.00 3.32
2309 2312 6.281848 TCGTGCTTAGTAAGTGAAAAGTTG 57.718 37.500 11.51 0.00 0.00 3.16
2310 2313 6.511282 GCTTCGTGCTTAGTAAGTGAAAAGTT 60.511 38.462 11.51 0.00 38.95 2.66
2311 2314 5.050295 GCTTCGTGCTTAGTAAGTGAAAAGT 60.050 40.000 11.51 0.00 38.95 2.66
2312 2315 5.374898 GCTTCGTGCTTAGTAAGTGAAAAG 58.625 41.667 11.51 10.83 38.95 2.27
2313 2316 4.212636 GGCTTCGTGCTTAGTAAGTGAAAA 59.787 41.667 11.51 1.85 42.39 2.29
2314 2317 3.744426 GGCTTCGTGCTTAGTAAGTGAAA 59.256 43.478 11.51 1.54 42.39 2.69
2315 2318 3.243941 TGGCTTCGTGCTTAGTAAGTGAA 60.244 43.478 11.51 11.42 42.39 3.18
2316 2319 2.297880 TGGCTTCGTGCTTAGTAAGTGA 59.702 45.455 11.51 4.94 42.39 3.41
2317 2320 2.683968 TGGCTTCGTGCTTAGTAAGTG 58.316 47.619 11.51 2.77 42.39 3.16
2318 2321 3.611766 ATGGCTTCGTGCTTAGTAAGT 57.388 42.857 11.51 0.00 42.39 2.24
2319 2322 5.864474 CCTATATGGCTTCGTGCTTAGTAAG 59.136 44.000 5.47 5.47 42.39 2.34
2320 2323 5.537295 TCCTATATGGCTTCGTGCTTAGTAA 59.463 40.000 3.58 0.00 42.39 2.24
2321 2324 5.048224 GTCCTATATGGCTTCGTGCTTAGTA 60.048 44.000 3.58 0.00 42.39 1.82
2322 2325 3.895656 TCCTATATGGCTTCGTGCTTAGT 59.104 43.478 3.58 0.00 42.39 2.24
2323 2326 4.238514 GTCCTATATGGCTTCGTGCTTAG 58.761 47.826 3.58 0.00 42.39 2.18
2324 2327 3.639561 TGTCCTATATGGCTTCGTGCTTA 59.360 43.478 3.58 0.00 42.39 3.09
2325 2328 2.434336 TGTCCTATATGGCTTCGTGCTT 59.566 45.455 3.58 0.00 42.39 3.91
2326 2329 2.039418 TGTCCTATATGGCTTCGTGCT 58.961 47.619 3.58 0.00 42.39 4.40
2327 2330 2.526304 TGTCCTATATGGCTTCGTGC 57.474 50.000 0.00 0.00 41.94 5.34
2328 2331 4.527509 AGATGTCCTATATGGCTTCGTG 57.472 45.455 0.00 0.00 35.26 4.35
2329 2332 4.463186 GGTAGATGTCCTATATGGCTTCGT 59.537 45.833 0.00 0.00 35.26 3.85
2330 2333 4.462834 TGGTAGATGTCCTATATGGCTTCG 59.537 45.833 0.00 0.00 35.26 3.79
2331 2334 5.625656 GCTGGTAGATGTCCTATATGGCTTC 60.626 48.000 0.00 0.00 35.26 3.86
2332 2335 4.223923 GCTGGTAGATGTCCTATATGGCTT 59.776 45.833 0.00 0.00 35.26 4.35
2333 2336 3.772025 GCTGGTAGATGTCCTATATGGCT 59.228 47.826 0.00 0.00 35.26 4.75
2334 2337 3.515502 TGCTGGTAGATGTCCTATATGGC 59.484 47.826 0.00 0.00 35.26 4.40
2335 2338 4.528206 TGTGCTGGTAGATGTCCTATATGG 59.472 45.833 0.00 0.00 37.10 2.74
2336 2339 5.728637 TGTGCTGGTAGATGTCCTATATG 57.271 43.478 0.00 0.00 0.00 1.78
2337 2340 6.747414 TTTGTGCTGGTAGATGTCCTATAT 57.253 37.500 0.00 0.00 0.00 0.86
2338 2341 6.408092 CCTTTTGTGCTGGTAGATGTCCTATA 60.408 42.308 0.00 0.00 0.00 1.31
2339 2342 5.431765 CTTTTGTGCTGGTAGATGTCCTAT 58.568 41.667 0.00 0.00 0.00 2.57
2340 2343 4.323485 CCTTTTGTGCTGGTAGATGTCCTA 60.323 45.833 0.00 0.00 0.00 2.94
2341 2344 3.560025 CCTTTTGTGCTGGTAGATGTCCT 60.560 47.826 0.00 0.00 0.00 3.85
2342 2345 2.749621 CCTTTTGTGCTGGTAGATGTCC 59.250 50.000 0.00 0.00 0.00 4.02
2343 2346 2.749621 CCCTTTTGTGCTGGTAGATGTC 59.250 50.000 0.00 0.00 0.00 3.06
2344 2347 2.375174 TCCCTTTTGTGCTGGTAGATGT 59.625 45.455 0.00 0.00 0.00 3.06
2345 2348 2.749621 GTCCCTTTTGTGCTGGTAGATG 59.250 50.000 0.00 0.00 0.00 2.90
2346 2349 2.644798 AGTCCCTTTTGTGCTGGTAGAT 59.355 45.455 0.00 0.00 0.00 1.98
2347 2350 2.054799 AGTCCCTTTTGTGCTGGTAGA 58.945 47.619 0.00 0.00 0.00 2.59
2348 2351 2.154462 CAGTCCCTTTTGTGCTGGTAG 58.846 52.381 0.00 0.00 0.00 3.18
2349 2352 1.771854 TCAGTCCCTTTTGTGCTGGTA 59.228 47.619 0.00 0.00 0.00 3.25
2350 2353 0.550914 TCAGTCCCTTTTGTGCTGGT 59.449 50.000 0.00 0.00 0.00 4.00
2351 2354 1.691196 TTCAGTCCCTTTTGTGCTGG 58.309 50.000 0.00 0.00 0.00 4.85
2352 2355 2.035066 CCTTTCAGTCCCTTTTGTGCTG 59.965 50.000 0.00 0.00 0.00 4.41
2353 2356 2.310538 CCTTTCAGTCCCTTTTGTGCT 58.689 47.619 0.00 0.00 0.00 4.40
2354 2357 1.341209 CCCTTTCAGTCCCTTTTGTGC 59.659 52.381 0.00 0.00 0.00 4.57
2355 2358 1.963515 CCCCTTTCAGTCCCTTTTGTG 59.036 52.381 0.00 0.00 0.00 3.33
2356 2359 1.133167 CCCCCTTTCAGTCCCTTTTGT 60.133 52.381 0.00 0.00 0.00 2.83
2357 2360 1.632589 CCCCCTTTCAGTCCCTTTTG 58.367 55.000 0.00 0.00 0.00 2.44
2374 2377 3.628646 ATGCACCAACTCGCTCCCC 62.629 63.158 0.00 0.00 0.00 4.81
2375 2378 2.045926 ATGCACCAACTCGCTCCC 60.046 61.111 0.00 0.00 0.00 4.30
2376 2379 2.456119 CGATGCACCAACTCGCTCC 61.456 63.158 0.00 0.00 0.00 4.70
2377 2380 1.687494 GACGATGCACCAACTCGCTC 61.687 60.000 6.57 1.18 35.89 5.03
2378 2381 1.738099 GACGATGCACCAACTCGCT 60.738 57.895 6.57 0.00 35.89 4.93
2379 2382 1.959899 CTGACGATGCACCAACTCGC 61.960 60.000 6.57 1.31 35.89 5.03
2380 2383 1.354337 CCTGACGATGCACCAACTCG 61.354 60.000 5.16 5.16 38.34 4.18
2381 2384 0.037326 TCCTGACGATGCACCAACTC 60.037 55.000 0.00 0.00 0.00 3.01
2382 2385 0.396435 TTCCTGACGATGCACCAACT 59.604 50.000 0.00 0.00 0.00 3.16
2383 2386 1.069227 GTTTCCTGACGATGCACCAAC 60.069 52.381 0.00 0.00 0.00 3.77
2384 2387 1.234821 GTTTCCTGACGATGCACCAA 58.765 50.000 0.00 0.00 0.00 3.67
2385 2388 0.605319 GGTTTCCTGACGATGCACCA 60.605 55.000 0.00 0.00 0.00 4.17
2386 2389 1.305930 GGGTTTCCTGACGATGCACC 61.306 60.000 0.00 0.00 0.00 5.01
2387 2390 0.605319 TGGGTTTCCTGACGATGCAC 60.605 55.000 0.00 0.00 0.00 4.57
2388 2391 0.605319 GTGGGTTTCCTGACGATGCA 60.605 55.000 0.00 0.00 0.00 3.96
2389 2392 0.321653 AGTGGGTTTCCTGACGATGC 60.322 55.000 0.00 0.00 0.00 3.91
2390 2393 1.442769 CAGTGGGTTTCCTGACGATG 58.557 55.000 0.00 0.00 0.00 3.84
2391 2394 0.321653 GCAGTGGGTTTCCTGACGAT 60.322 55.000 0.00 0.00 0.00 3.73
2392 2395 1.070786 GCAGTGGGTTTCCTGACGA 59.929 57.895 0.00 0.00 0.00 4.20
2393 2396 0.606401 ATGCAGTGGGTTTCCTGACG 60.606 55.000 0.00 0.00 0.00 4.35
2394 2397 0.883833 CATGCAGTGGGTTTCCTGAC 59.116 55.000 0.00 0.00 0.00 3.51
2395 2398 0.770499 TCATGCAGTGGGTTTCCTGA 59.230 50.000 0.00 0.00 0.00 3.86
2396 2399 1.475280 CATCATGCAGTGGGTTTCCTG 59.525 52.381 0.00 0.00 0.00 3.86
2397 2400 1.355381 TCATCATGCAGTGGGTTTCCT 59.645 47.619 0.00 0.00 0.00 3.36
2398 2401 1.747355 CTCATCATGCAGTGGGTTTCC 59.253 52.381 0.00 0.00 0.00 3.13
2399 2402 1.133790 GCTCATCATGCAGTGGGTTTC 59.866 52.381 0.00 0.00 0.00 2.78
2400 2403 1.180029 GCTCATCATGCAGTGGGTTT 58.820 50.000 0.00 0.00 0.00 3.27
2401 2404 0.682209 GGCTCATCATGCAGTGGGTT 60.682 55.000 0.00 0.00 0.00 4.11
2402 2405 1.077212 GGCTCATCATGCAGTGGGT 60.077 57.895 0.00 0.00 0.00 4.51
2403 2406 1.101635 CAGGCTCATCATGCAGTGGG 61.102 60.000 0.00 0.00 0.00 4.61
2404 2407 0.107361 TCAGGCTCATCATGCAGTGG 60.107 55.000 0.00 0.00 0.00 4.00
2405 2408 1.746470 TTCAGGCTCATCATGCAGTG 58.254 50.000 0.00 0.00 0.00 3.66
2406 2409 2.089980 GTTTCAGGCTCATCATGCAGT 58.910 47.619 0.00 0.00 0.00 4.40
2407 2410 1.063616 CGTTTCAGGCTCATCATGCAG 59.936 52.381 0.00 0.00 0.00 4.41
2408 2411 1.089112 CGTTTCAGGCTCATCATGCA 58.911 50.000 0.00 0.00 0.00 3.96
2409 2412 0.379669 CCGTTTCAGGCTCATCATGC 59.620 55.000 0.00 0.00 0.00 4.06
2410 2413 1.667724 GTCCGTTTCAGGCTCATCATG 59.332 52.381 0.00 0.00 0.00 3.07
2411 2414 1.407437 GGTCCGTTTCAGGCTCATCAT 60.407 52.381 0.00 0.00 0.00 2.45
2412 2415 0.036388 GGTCCGTTTCAGGCTCATCA 60.036 55.000 0.00 0.00 0.00 3.07
2413 2416 0.036388 TGGTCCGTTTCAGGCTCATC 60.036 55.000 0.00 0.00 0.00 2.92
2414 2417 0.620556 ATGGTCCGTTTCAGGCTCAT 59.379 50.000 0.00 0.00 0.00 2.90
2415 2418 0.036388 GATGGTCCGTTTCAGGCTCA 60.036 55.000 0.00 0.00 0.00 4.26
2416 2419 0.036388 TGATGGTCCGTTTCAGGCTC 60.036 55.000 0.00 0.00 0.00 4.70
2417 2420 0.036010 CTGATGGTCCGTTTCAGGCT 60.036 55.000 7.93 0.00 34.55 4.58
2418 2421 1.648467 GCTGATGGTCCGTTTCAGGC 61.648 60.000 14.67 6.66 37.84 4.85
2419 2422 0.036010 AGCTGATGGTCCGTTTCAGG 60.036 55.000 14.67 2.05 37.84 3.86
2420 2423 2.672961 TAGCTGATGGTCCGTTTCAG 57.327 50.000 0.00 10.49 39.87 3.02
2421 2424 2.905075 CATAGCTGATGGTCCGTTTCA 58.095 47.619 0.00 0.00 31.20 2.69
2431 2434 1.334869 GGTTTTCGCCCATAGCTGATG 59.665 52.381 0.00 0.00 40.39 3.07
2432 2435 1.680338 GGTTTTCGCCCATAGCTGAT 58.320 50.000 0.00 0.00 40.39 2.90
2433 2436 3.168773 GGTTTTCGCCCATAGCTGA 57.831 52.632 0.00 0.00 40.39 4.26
2441 2444 3.417224 GTCGTCGGGTTTTCGCCC 61.417 66.667 0.00 0.00 45.21 6.13
2442 2445 2.662527 TGTCGTCGGGTTTTCGCC 60.663 61.111 0.00 0.00 0.00 5.54
2443 2446 1.952635 AGTGTCGTCGGGTTTTCGC 60.953 57.895 0.00 0.00 0.00 4.70
2444 2447 1.850640 CAGTGTCGTCGGGTTTTCG 59.149 57.895 0.00 0.00 0.00 3.46
2445 2448 0.878961 AGCAGTGTCGTCGGGTTTTC 60.879 55.000 0.00 0.00 0.00 2.29
2446 2449 0.390124 TAGCAGTGTCGTCGGGTTTT 59.610 50.000 0.00 0.00 0.00 2.43
2447 2450 0.390124 TTAGCAGTGTCGTCGGGTTT 59.610 50.000 0.00 0.00 0.00 3.27
2448 2451 0.319297 GTTAGCAGTGTCGTCGGGTT 60.319 55.000 0.00 0.00 0.00 4.11
2449 2452 1.288127 GTTAGCAGTGTCGTCGGGT 59.712 57.895 0.00 0.00 0.00 5.28
2450 2453 1.445582 GGTTAGCAGTGTCGTCGGG 60.446 63.158 0.00 0.00 0.00 5.14
2451 2454 1.007336 GTGGTTAGCAGTGTCGTCGG 61.007 60.000 0.00 0.00 0.00 4.79
2452 2455 0.039437 AGTGGTTAGCAGTGTCGTCG 60.039 55.000 0.00 0.00 0.00 5.12
2453 2456 1.419374 CAGTGGTTAGCAGTGTCGTC 58.581 55.000 10.72 0.00 0.00 4.20
2454 2457 0.600255 GCAGTGGTTAGCAGTGTCGT 60.600 55.000 18.64 0.00 0.00 4.34
2455 2458 0.319900 AGCAGTGGTTAGCAGTGTCG 60.320 55.000 18.64 0.00 0.00 4.35
2456 2459 1.270305 TGAGCAGTGGTTAGCAGTGTC 60.270 52.381 18.64 14.75 0.00 3.67
2457 2460 0.758734 TGAGCAGTGGTTAGCAGTGT 59.241 50.000 18.64 7.40 0.00 3.55
2458 2461 1.882912 TTGAGCAGTGGTTAGCAGTG 58.117 50.000 14.17 14.17 0.00 3.66
2459 2462 2.222027 GTTTGAGCAGTGGTTAGCAGT 58.778 47.619 0.00 0.00 0.00 4.40
2460 2463 2.221169 TGTTTGAGCAGTGGTTAGCAG 58.779 47.619 0.00 0.00 0.00 4.24
2461 2464 2.340210 TGTTTGAGCAGTGGTTAGCA 57.660 45.000 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.