Multiple sequence alignment - TraesCS3D01G141400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G141400 chr3D 100.000 7441 0 0 1 7441 103635139 103642579 0.000000e+00 13742.0
1 TraesCS3D01G141400 chr3A 90.715 2391 150 30 5096 7441 552620377 552618014 0.000000e+00 3120.0
2 TraesCS3D01G141400 chr3A 87.908 1778 148 31 2928 4668 552622503 552620756 0.000000e+00 2030.0
3 TraesCS3D01G141400 chr3A 88.784 1275 116 18 873 2127 552624500 552623233 0.000000e+00 1537.0
4 TraesCS3D01G141400 chr3A 92.354 824 41 11 6 820 552625704 552624894 0.000000e+00 1153.0
5 TraesCS3D01G141400 chr3A 83.102 722 71 17 2127 2824 552623194 552622500 1.770000e-170 610.0
6 TraesCS3D01G141400 chr3A 91.667 60 5 0 2870 2929 509865340 509865399 4.780000e-12 84.2
7 TraesCS3D01G141400 chr3B 93.594 1998 89 24 151 2128 154210345 154212323 0.000000e+00 2944.0
8 TraesCS3D01G141400 chr3B 93.857 1579 57 15 5881 7441 154216107 154217663 0.000000e+00 2342.0
9 TraesCS3D01G141400 chr3B 90.118 931 71 13 3753 4668 154213858 154214782 0.000000e+00 1190.0
10 TraesCS3D01G141400 chr3B 89.403 821 53 17 4815 5608 154214765 154215578 0.000000e+00 1003.0
11 TraesCS3D01G141400 chr3B 86.433 855 60 19 2930 3754 154212948 154213776 0.000000e+00 885.0
12 TraesCS3D01G141400 chr3B 87.201 586 43 11 2126 2696 154212370 154212938 8.140000e-179 638.0
13 TraesCS3D01G141400 chr3B 87.738 367 32 5 5604 5960 154215750 154216113 4.150000e-112 416.0
14 TraesCS3D01G141400 chr3B 92.373 118 8 1 1 117 154210225 154210342 4.620000e-37 167.0
15 TraesCS3D01G141400 chr3B 93.103 58 2 2 2873 2929 647907000 647906944 4.780000e-12 84.2
16 TraesCS3D01G141400 chr4A 88.535 157 15 1 4671 4827 531099672 531099825 3.540000e-43 187.0
17 TraesCS3D01G141400 chr4D 87.850 107 9 2 4671 4777 65150509 65150611 1.010000e-23 122.0
18 TraesCS3D01G141400 chr2A 85.714 105 11 2 2829 2929 113599450 113599346 2.840000e-19 108.0
19 TraesCS3D01G141400 chr2A 91.667 60 5 0 2870 2929 141506405 141506464 4.780000e-12 84.2
20 TraesCS3D01G141400 chr2A 91.667 60 5 0 2870 2929 690522403 690522462 4.780000e-12 84.2
21 TraesCS3D01G141400 chr2B 93.443 61 2 2 2870 2929 190022978 190023037 1.030000e-13 89.8
22 TraesCS3D01G141400 chr2B 93.617 47 3 0 2827 2873 250258919 250258965 3.720000e-08 71.3
23 TraesCS3D01G141400 chr7D 91.667 60 5 0 2870 2929 498171898 498171957 4.780000e-12 84.2
24 TraesCS3D01G141400 chr7D 93.617 47 3 0 2827 2873 51742873 51742827 3.720000e-08 71.3
25 TraesCS3D01G141400 chr7B 91.803 61 4 1 2870 2929 245994204 245994264 4.780000e-12 84.2
26 TraesCS3D01G141400 chr4B 92.982 57 4 0 2873 2929 106227471 106227415 4.780000e-12 84.2
27 TraesCS3D01G141400 chr5B 97.727 44 1 0 2830 2873 682853581 682853538 8.010000e-10 76.8
28 TraesCS3D01G141400 chr1D 95.745 47 2 0 2827 2873 492643885 492643931 8.010000e-10 76.8
29 TraesCS3D01G141400 chr7A 93.617 47 3 0 2826 2872 544261190 544261144 3.720000e-08 71.3
30 TraesCS3D01G141400 chr5A 93.617 47 3 0 2827 2873 660831106 660831152 3.720000e-08 71.3
31 TraesCS3D01G141400 chr1B 93.617 47 3 0 2827 2873 518807897 518807943 3.720000e-08 71.3
32 TraesCS3D01G141400 chr1A 93.617 47 3 0 2827 2873 459273239 459273285 3.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G141400 chr3D 103635139 103642579 7440 False 13742.000 13742 100.000000 1 7441 1 chr3D.!!$F1 7440
1 TraesCS3D01G141400 chr3A 552618014 552625704 7690 True 1690.000 3120 88.572600 6 7441 5 chr3A.!!$R1 7435
2 TraesCS3D01G141400 chr3B 154210225 154217663 7438 False 1198.125 2944 90.089625 1 7441 8 chr3B.!!$F1 7440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1331 0.107848 AAGGCGTATCTGTTTCCGGG 60.108 55.0 0.00 0.00 0.00 5.73 F
1956 2329 0.034337 TTGGTTGACTGTCGGCTACC 59.966 55.0 2.98 8.43 0.00 3.18 F
2984 3457 0.820891 CTGATATGGGGCACACTGGC 60.821 60.0 0.00 0.00 42.88 4.85 F
4709 5318 0.037232 AGCGACCTAAAGTGAGCACC 60.037 55.0 0.00 0.00 32.68 5.01 F
4766 5375 0.036875 AGCGGGCATATTCCTAAGGC 59.963 55.0 0.00 0.00 0.00 4.35 F
4789 5398 0.036875 GCCAGGGCGCCTTATTATCT 59.963 55.0 28.56 10.17 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2429 0.321671 ACTTGACCACATCGTCAGGG 59.678 55.0 5.92 0.0 43.39 4.45 R
2988 3461 0.324943 GAGGAGCAAGTAGGCAACCA 59.675 55.0 0.00 0.0 35.81 3.67 R
4747 5356 0.036875 GCCTTAGGAATATGCCCGCT 59.963 55.0 0.69 0.0 0.00 5.52 R
5993 7006 0.037790 GACTGGAGAGAGCGTTGCTT 60.038 55.0 0.00 0.0 39.88 3.91 R
6000 7013 1.042559 CAGGGAGGACTGGAGAGAGC 61.043 65.0 0.00 0.0 34.84 4.09 R
6606 7633 1.568504 TGCTCCCCTGAAGTAATCGT 58.431 50.0 0.00 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.405680 TGATTCTGTCTCGTCCCATACAAT 59.594 41.667 0.00 0.00 0.00 2.71
33 34 4.028131 TCGTCCCATACAATTCCTACAGT 58.972 43.478 0.00 0.00 0.00 3.55
34 35 4.119862 CGTCCCATACAATTCCTACAGTG 58.880 47.826 0.00 0.00 0.00 3.66
35 36 3.877508 GTCCCATACAATTCCTACAGTGC 59.122 47.826 0.00 0.00 0.00 4.40
36 37 3.521531 TCCCATACAATTCCTACAGTGCA 59.478 43.478 0.00 0.00 0.00 4.57
37 38 3.627577 CCCATACAATTCCTACAGTGCAC 59.372 47.826 9.40 9.40 0.00 4.57
79 81 7.921786 TGATTCCTAATTCTTTGTACACTGG 57.078 36.000 0.00 0.00 0.00 4.00
119 121 4.100344 ACCAATCACTTAAACAACAACCCC 59.900 41.667 0.00 0.00 0.00 4.95
120 122 4.100189 CCAATCACTTAAACAACAACCCCA 59.900 41.667 0.00 0.00 0.00 4.96
121 123 5.395768 CCAATCACTTAAACAACAACCCCAA 60.396 40.000 0.00 0.00 0.00 4.12
122 124 4.722361 TCACTTAAACAACAACCCCAAC 57.278 40.909 0.00 0.00 0.00 3.77
125 127 5.591067 TCACTTAAACAACAACCCCAACTAG 59.409 40.000 0.00 0.00 0.00 2.57
138 140 4.210331 CCCCAACTAGCTCTAATTGCAAT 58.790 43.478 5.99 5.99 0.00 3.56
141 143 6.491403 CCCCAACTAGCTCTAATTGCAATAAT 59.509 38.462 13.39 0.00 0.00 1.28
143 145 9.066892 CCCAACTAGCTCTAATTGCAATAATAA 57.933 33.333 13.39 0.00 0.00 1.40
835 845 0.873054 ACGAACACGATCGACTGTCT 59.127 50.000 24.34 7.57 45.48 3.41
869 1220 0.636733 GTTTATCGACGCGAGCGAAA 59.363 50.000 26.09 19.21 39.91 3.46
901 1252 2.143594 GAAGCTGACCGTCACCGACT 62.144 60.000 0.00 0.00 35.63 4.18
967 1320 0.822164 AGGTTACTGCGAAGGCGTAT 59.178 50.000 0.00 0.00 44.10 3.06
978 1331 0.107848 AAGGCGTATCTGTTTCCGGG 60.108 55.000 0.00 0.00 0.00 5.73
979 1332 1.219935 GGCGTATCTGTTTCCGGGT 59.780 57.895 0.00 0.00 0.00 5.28
980 1333 0.808847 GGCGTATCTGTTTCCGGGTC 60.809 60.000 0.00 0.00 0.00 4.46
981 1334 0.108520 GCGTATCTGTTTCCGGGTCA 60.109 55.000 0.00 0.00 0.00 4.02
991 1348 3.129638 TGTTTCCGGGTCAAAAGTTGAAG 59.870 43.478 0.00 0.00 42.15 3.02
1280 1637 3.118775 GGGTTCTTGAACTGTTTTGGCTT 60.119 43.478 12.44 0.00 0.00 4.35
1282 1639 5.221441 GGGTTCTTGAACTGTTTTGGCTTAT 60.221 40.000 12.44 0.00 0.00 1.73
1283 1640 5.920840 GGTTCTTGAACTGTTTTGGCTTATC 59.079 40.000 12.44 0.00 0.00 1.75
1353 1710 0.249868 TGTTCCTGGTGCTCTTCACG 60.250 55.000 0.00 0.00 46.56 4.35
1380 1737 5.298989 AGGTACAGTGTTTAATGACCACA 57.701 39.130 12.13 0.00 30.06 4.17
1545 1910 5.868258 GTGATATGATGCTCAGTAGTCATGG 59.132 44.000 0.00 0.00 33.65 3.66
1572 1942 7.510428 TTTGCGATTTTCTATCTTTGCATTC 57.490 32.000 0.00 0.00 0.00 2.67
1613 1984 1.803555 GCAGGTCTCTCAAAAGCACTC 59.196 52.381 0.00 0.00 0.00 3.51
1614 1985 2.808202 GCAGGTCTCTCAAAAGCACTCA 60.808 50.000 0.00 0.00 0.00 3.41
1698 2070 2.637872 TGTTAAGGAGGAACACTGGGAG 59.362 50.000 0.00 0.00 31.92 4.30
1758 2130 3.056607 GTGCTTATGGAATGGCTGTGTTT 60.057 43.478 0.00 0.00 0.00 2.83
1793 2165 9.585099 TGTTATCATGATTTCTGGTTTTTATGC 57.415 29.630 14.65 0.00 0.00 3.14
1812 2185 4.040936 TGCATTTCTAGGCAAGGGTAAA 57.959 40.909 0.00 0.00 38.26 2.01
1816 2189 4.456662 TTTCTAGGCAAGGGTAAACCAA 57.543 40.909 0.81 0.00 43.89 3.67
1821 2194 4.397919 AGGCAAGGGTAAACCAAGTTAT 57.602 40.909 0.81 0.00 43.89 1.89
1827 2200 7.601130 GGCAAGGGTAAACCAAGTTATTAAAAG 59.399 37.037 0.81 0.00 43.89 2.27
1853 2226 2.347731 GCTGTTCCCTACTACAGTTGC 58.652 52.381 0.00 0.00 42.86 4.17
1904 2277 1.830477 TCTTGTTTTGCTTTGCAGGGT 59.170 42.857 0.00 0.00 40.61 4.34
1956 2329 0.034337 TTGGTTGACTGTCGGCTACC 59.966 55.000 2.98 8.43 0.00 3.18
1986 2359 7.339721 TGGGATTTATCGGTATGCTTTTGTTTA 59.660 33.333 0.00 0.00 0.00 2.01
1993 2366 7.209471 TCGGTATGCTTTTGTTTATCTTTGT 57.791 32.000 0.00 0.00 0.00 2.83
2015 2388 6.100668 TGTGTTTTATGGATGTGCATTCATG 58.899 36.000 14.46 0.00 37.58 3.07
2056 2429 7.823149 ATAACTATCGCGTTTTATATCACCC 57.177 36.000 5.77 0.00 0.00 4.61
2059 2432 1.764134 TCGCGTTTTATATCACCCCCT 59.236 47.619 5.77 0.00 0.00 4.79
2060 2433 1.871039 CGCGTTTTATATCACCCCCTG 59.129 52.381 0.00 0.00 0.00 4.45
2061 2434 2.484065 CGCGTTTTATATCACCCCCTGA 60.484 50.000 0.00 0.00 0.00 3.86
2062 2435 2.876550 GCGTTTTATATCACCCCCTGAC 59.123 50.000 0.00 0.00 0.00 3.51
2065 2438 4.502604 CGTTTTATATCACCCCCTGACGAT 60.503 45.833 0.00 0.00 0.00 3.73
2066 2439 4.617253 TTTATATCACCCCCTGACGATG 57.383 45.455 0.00 0.00 0.00 3.84
2069 2444 1.626356 ATCACCCCCTGACGATGTGG 61.626 60.000 0.00 0.00 0.00 4.17
2077 2452 2.069273 CCTGACGATGTGGTCAAGTTC 58.931 52.381 0.00 0.00 45.59 3.01
2167 2592 4.023279 TGGTCTCAATCGTTTTCCAACATG 60.023 41.667 0.00 0.00 32.54 3.21
2214 2640 9.896645 ATGTAACAGTCACTTAGATTGATCATT 57.103 29.630 0.00 0.00 37.41 2.57
2269 2701 9.092876 CCTGTATACTTGAATCTGTCTCTTTTC 57.907 37.037 4.17 0.00 0.00 2.29
2270 2702 9.868277 CTGTATACTTGAATCTGTCTCTTTTCT 57.132 33.333 4.17 0.00 0.00 2.52
2292 2731 1.815613 AGATCGTAGCCCTGATCATCG 59.184 52.381 0.00 0.00 42.72 3.84
2333 2772 2.698855 AACGAAGCTGTAGCCATGAT 57.301 45.000 0.00 0.00 43.38 2.45
2341 2780 7.090808 CGAAGCTGTAGCCATGATATTAGTAA 58.909 38.462 0.00 0.00 43.38 2.24
2346 2785 7.368198 TGTAGCCATGATATTAGTAACACCA 57.632 36.000 0.00 0.00 0.00 4.17
2347 2786 7.441836 TGTAGCCATGATATTAGTAACACCAG 58.558 38.462 0.00 0.00 0.00 4.00
2348 2787 6.747414 AGCCATGATATTAGTAACACCAGA 57.253 37.500 0.00 0.00 0.00 3.86
2349 2788 6.525629 AGCCATGATATTAGTAACACCAGAC 58.474 40.000 0.00 0.00 0.00 3.51
2350 2789 6.327626 AGCCATGATATTAGTAACACCAGACT 59.672 38.462 0.00 0.00 0.00 3.24
2351 2790 7.509318 AGCCATGATATTAGTAACACCAGACTA 59.491 37.037 0.00 0.00 0.00 2.59
2352 2791 8.314751 GCCATGATATTAGTAACACCAGACTAT 58.685 37.037 0.00 0.00 0.00 2.12
2353 2792 9.645059 CCATGATATTAGTAACACCAGACTATG 57.355 37.037 0.00 0.00 0.00 2.23
2417 2866 8.841300 TGTTAAACTGTAATTGTATTGCTGTGA 58.159 29.630 0.00 0.00 0.00 3.58
2431 2891 4.952262 TGCTGTGAATTCATTACTCAGC 57.048 40.909 28.13 28.13 44.39 4.26
2474 2938 3.133362 ACTGACTGAACGTTTCCTACCAA 59.867 43.478 0.46 0.00 0.00 3.67
2569 3040 5.103940 ACATTATCCATCCCTTGCTTGTAGT 60.104 40.000 0.00 0.00 0.00 2.73
2573 3044 5.546621 TCCATCCCTTGCTTGTAGTATAC 57.453 43.478 0.00 0.00 43.42 1.47
2575 3046 4.307432 CATCCCTTGCTTGTAGTATACCG 58.693 47.826 0.00 0.00 42.12 4.02
2576 3047 2.101917 TCCCTTGCTTGTAGTATACCGC 59.898 50.000 0.00 0.00 42.12 5.68
2577 3048 2.102588 CCCTTGCTTGTAGTATACCGCT 59.897 50.000 0.00 0.00 42.12 5.52
2583 3054 3.256136 GCTTGTAGTATACCGCTGAGGAT 59.744 47.826 3.87 0.00 42.12 3.24
2609 3080 1.424638 AATGGTACTCCTGATCGGGG 58.575 55.000 20.82 13.35 40.09 5.73
2651 3122 4.748892 TGCGAACAATTTGTTTTCCTTGA 58.251 34.783 15.54 0.00 41.28 3.02
2698 3169 1.108776 CCCAGCAAGATCCACATTGG 58.891 55.000 0.00 0.00 39.43 3.16
2727 3199 5.821204 TCGATATGAGTGACATACTGTGTG 58.179 41.667 2.78 2.78 43.12 3.82
2738 3210 1.522668 TACTGTGTGGCAATGCTGAC 58.477 50.000 4.82 3.03 0.00 3.51
2765 3237 1.304282 CATTGCAGCCCCCACTACT 59.696 57.895 0.00 0.00 0.00 2.57
2772 3244 2.294078 GCCCCCACTACTGCAGAGT 61.294 63.158 23.35 16.22 36.07 3.24
2774 3246 0.824759 CCCCCACTACTGCAGAGTAC 59.175 60.000 23.35 0.00 33.21 2.73
2793 3266 6.826741 AGAGTACCAAGTGTATTTTGTGTGTT 59.173 34.615 0.00 0.00 0.00 3.32
2805 3278 9.062524 TGTATTTTGTGTGTTAAGTTATGAGCT 57.937 29.630 0.00 0.00 0.00 4.09
2826 3299 6.787225 AGCTATTATGCTAGTCATAGTACGC 58.213 40.000 0.00 11.30 42.10 4.42
2827 3300 5.972382 GCTATTATGCTAGTCATAGTACGCC 59.028 44.000 6.87 0.00 38.75 5.68
2828 3301 2.991434 ATGCTAGTCATAGTACGCCG 57.009 50.000 0.00 0.00 32.59 6.46
2829 3302 1.671979 TGCTAGTCATAGTACGCCGT 58.328 50.000 0.00 0.00 0.00 5.68
2830 3303 2.019249 TGCTAGTCATAGTACGCCGTT 58.981 47.619 0.00 0.00 0.00 4.44
2831 3304 2.032550 TGCTAGTCATAGTACGCCGTTC 59.967 50.000 0.00 0.00 0.00 3.95
2832 3305 2.032550 GCTAGTCATAGTACGCCGTTCA 59.967 50.000 0.00 0.00 0.00 3.18
2833 3306 3.304525 GCTAGTCATAGTACGCCGTTCAT 60.305 47.826 0.00 0.00 0.00 2.57
2834 3307 3.079960 AGTCATAGTACGCCGTTCATG 57.920 47.619 0.00 0.00 0.00 3.07
2835 3308 2.686405 AGTCATAGTACGCCGTTCATGA 59.314 45.455 0.00 0.00 0.00 3.07
2836 3309 3.129813 AGTCATAGTACGCCGTTCATGAA 59.870 43.478 3.38 3.38 0.00 2.57
2837 3310 4.049186 GTCATAGTACGCCGTTCATGAAT 58.951 43.478 12.12 0.00 0.00 2.57
2838 3311 5.009310 AGTCATAGTACGCCGTTCATGAATA 59.991 40.000 12.12 0.00 0.00 1.75
2839 3312 5.862323 GTCATAGTACGCCGTTCATGAATAT 59.138 40.000 12.12 0.00 0.00 1.28
2840 3313 7.025365 GTCATAGTACGCCGTTCATGAATATA 58.975 38.462 12.12 0.00 0.00 0.86
2841 3314 7.539710 GTCATAGTACGCCGTTCATGAATATAA 59.460 37.037 12.12 0.00 0.00 0.98
2842 3315 7.753580 TCATAGTACGCCGTTCATGAATATAAG 59.246 37.037 12.12 5.51 0.00 1.73
2843 3316 6.080648 AGTACGCCGTTCATGAATATAAGA 57.919 37.500 12.12 0.00 0.00 2.10
2844 3317 6.688578 AGTACGCCGTTCATGAATATAAGAT 58.311 36.000 12.12 0.00 0.00 2.40
2845 3318 5.845985 ACGCCGTTCATGAATATAAGATG 57.154 39.130 12.12 0.00 0.00 2.90
2846 3319 5.297547 ACGCCGTTCATGAATATAAGATGT 58.702 37.500 12.12 0.47 0.00 3.06
2847 3320 5.758296 ACGCCGTTCATGAATATAAGATGTT 59.242 36.000 12.12 0.00 0.00 2.71
2848 3321 6.260050 ACGCCGTTCATGAATATAAGATGTTT 59.740 34.615 12.12 0.00 0.00 2.83
2849 3322 7.132213 CGCCGTTCATGAATATAAGATGTTTT 58.868 34.615 12.12 0.00 0.00 2.43
2850 3323 7.112009 CGCCGTTCATGAATATAAGATGTTTTG 59.888 37.037 12.12 0.00 0.00 2.44
2851 3324 7.379529 GCCGTTCATGAATATAAGATGTTTTGG 59.620 37.037 12.12 0.00 0.00 3.28
2852 3325 8.620416 CCGTTCATGAATATAAGATGTTTTGGA 58.380 33.333 12.12 0.00 0.00 3.53
2883 3356 9.077885 TCAGTATGAACTACATGTCTATATGCA 57.922 33.333 0.00 0.00 45.97 3.96
2884 3357 9.866798 CAGTATGAACTACATGTCTATATGCAT 57.133 33.333 0.00 3.79 39.69 3.96
2886 3359 9.014533 GTATGAACTACATGTCTATATGCATCG 57.985 37.037 0.19 0.00 39.77 3.84
2887 3360 7.214467 TGAACTACATGTCTATATGCATCGA 57.786 36.000 0.19 0.00 0.00 3.59
2888 3361 7.657336 TGAACTACATGTCTATATGCATCGAA 58.343 34.615 0.19 0.00 0.00 3.71
2889 3362 8.306761 TGAACTACATGTCTATATGCATCGAAT 58.693 33.333 0.19 0.00 0.00 3.34
2890 3363 9.144747 GAACTACATGTCTATATGCATCGAATT 57.855 33.333 0.19 0.00 0.00 2.17
2891 3364 9.494271 AACTACATGTCTATATGCATCGAATTT 57.506 29.630 0.19 0.00 0.00 1.82
2895 3368 9.710900 ACATGTCTATATGCATCGAATTTAGAA 57.289 29.630 0.19 0.00 0.00 2.10
2953 3426 6.290294 AGAAAAAGCATTGATACTGCCAAT 57.710 33.333 0.00 0.00 40.56 3.16
2984 3457 0.820891 CTGATATGGGGCACACTGGC 60.821 60.000 0.00 0.00 42.88 4.85
2988 3461 1.788518 TATGGGGCACACTGGCTGTT 61.789 55.000 0.00 0.00 43.20 3.16
3020 3493 4.080638 ACTTGCTCCTCTAAGATTTCCTGG 60.081 45.833 0.00 0.00 0.00 4.45
3041 3514 6.481644 CCTGGTTTATCTAAGTCTTGATGCTC 59.518 42.308 0.00 0.00 0.00 4.26
3052 3525 7.430760 AAGTCTTGATGCTCCTTAATACTCT 57.569 36.000 0.00 0.00 0.00 3.24
3060 3533 7.930325 TGATGCTCCTTAATACTCTGATTTCAG 59.070 37.037 0.97 0.97 45.08 3.02
3122 3601 7.229306 CCTGGCAGTAAAATTTGAGATATGCTA 59.771 37.037 14.43 0.00 0.00 3.49
3124 3603 9.791801 TGGCAGTAAAATTTGAGATATGCTATA 57.208 29.630 0.00 0.00 0.00 1.31
3161 3640 4.330894 CGCTAATCTGAACTGCTTCATTCA 59.669 41.667 0.00 0.00 35.78 2.57
3182 3661 4.767928 TCACCCATTTTAACCGTTGCTTAT 59.232 37.500 0.00 0.00 0.00 1.73
3258 3739 6.767524 TGGCCTAGGTATGTTTTACAATTG 57.232 37.500 11.31 3.24 0.00 2.32
3296 3777 9.632638 ATTTAGTCATGGAAGTTATGCATAGTT 57.367 29.630 6.50 4.89 38.12 2.24
3300 3781 6.473455 GTCATGGAAGTTATGCATAGTTTTGC 59.527 38.462 6.50 8.57 38.12 3.68
3370 3854 9.094578 TCCTAAAGTTAGATGATATTCCCTCAG 57.905 37.037 0.00 0.00 32.47 3.35
3372 3856 9.921637 CTAAAGTTAGATGATATTCCCTCAGTC 57.078 37.037 0.00 0.00 32.47 3.51
3374 3858 9.661954 AAAGTTAGATGATATTCCCTCAGTCTA 57.338 33.333 0.00 0.00 0.00 2.59
3389 3873 9.144298 TCCCTCAGTCTATATTCGTATCTTTTT 57.856 33.333 0.00 0.00 0.00 1.94
3447 3931 9.347934 TGGTAATTAAACTTTAATCAATGCGTG 57.652 29.630 7.14 0.00 0.00 5.34
3568 4071 3.076621 TGAGATGGCTGTTGATTGTGTC 58.923 45.455 0.00 0.00 0.00 3.67
3571 4074 3.755378 AGATGGCTGTTGATTGTGTCTTC 59.245 43.478 0.00 0.00 0.00 2.87
3575 4078 3.755378 GGCTGTTGATTGTGTCTTCAGAT 59.245 43.478 0.00 0.00 33.45 2.90
3576 4079 4.217118 GGCTGTTGATTGTGTCTTCAGATT 59.783 41.667 0.00 0.00 33.45 2.40
3659 4162 1.821088 AGACAGGAGTTTGGAACCCT 58.179 50.000 0.00 0.00 33.92 4.34
3712 4216 3.838903 AGGAGTAACCCTACTTTCACTGG 59.161 47.826 0.00 0.00 38.55 4.00
3714 4218 4.285260 GGAGTAACCCTACTTTCACTGGAA 59.715 45.833 0.00 0.00 38.55 3.53
3746 4250 5.354234 ACGTGGGCATTCTAATTACTTCTTG 59.646 40.000 0.00 0.00 0.00 3.02
3784 4371 5.707298 CAGTTGGAATTGTGACACCTATTCT 59.293 40.000 20.77 7.08 0.00 2.40
3835 4422 9.994432 CTGAAATTGGTAAACTGAATCATCTAC 57.006 33.333 0.00 0.00 0.00 2.59
3859 4446 7.386059 ACAAAAGTTAATTTAGCTGGGGATTG 58.614 34.615 0.00 0.00 0.00 2.67
3863 4450 2.077687 ATTTAGCTGGGGATTGCCAG 57.922 50.000 0.00 0.00 37.15 4.85
3896 4483 5.105392 ACCTTGACAAAATGCTTGACAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
3969 4556 6.870971 TGGTTTCTAGCTTAACAATTTCGT 57.129 33.333 0.00 0.00 0.00 3.85
3986 4573 8.952278 ACAATTTCGTTCCTTTTACTATATGCA 58.048 29.630 0.00 0.00 0.00 3.96
3990 4577 7.534085 TCGTTCCTTTTACTATATGCAAGTG 57.466 36.000 0.00 0.00 0.00 3.16
3993 4580 7.410485 GTTCCTTTTACTATATGCAAGTGCTC 58.590 38.462 4.69 0.00 42.66 4.26
4000 4587 5.749462 ACTATATGCAAGTGCTCCTCTTTT 58.251 37.500 4.69 0.00 42.66 2.27
4038 4626 8.152246 CCCATATGTGATCCAATTGCTAAAAAT 58.848 33.333 0.00 0.00 0.00 1.82
4040 4628 6.913873 ATGTGATCCAATTGCTAAAAATGC 57.086 33.333 0.00 0.00 0.00 3.56
4142 4733 6.639632 ACACTAATTTCAAACATCACTGCT 57.360 33.333 0.00 0.00 0.00 4.24
4166 4757 5.710567 TGTTCTCTCTTAAGTCGGAGATGAA 59.289 40.000 18.43 10.60 40.67 2.57
4280 4871 6.349777 CGATTTTGGCTGGTAATTTCCTGTAA 60.350 38.462 9.26 3.77 0.00 2.41
4434 5032 7.795431 TGCTCATTGTTCGATTTGTTATTTC 57.205 32.000 0.00 0.00 0.00 2.17
4573 5173 3.016031 TGTTTTTGCACTTCTGAGCTCA 58.984 40.909 17.19 17.19 0.00 4.26
4638 5247 9.300681 AGACTCTTTCCATCATTTATTTGACAA 57.699 29.630 0.00 0.00 0.00 3.18
4664 5273 6.952773 TGTGGTAATTTACAATCTATGGCC 57.047 37.500 8.73 0.00 0.00 5.36
4665 5274 6.427441 TGTGGTAATTTACAATCTATGGCCA 58.573 36.000 8.56 8.56 0.00 5.36
4666 5275 6.320164 TGTGGTAATTTACAATCTATGGCCAC 59.680 38.462 8.16 0.00 41.08 5.01
4667 5276 6.546034 GTGGTAATTTACAATCTATGGCCACT 59.454 38.462 8.16 0.00 38.60 4.00
4668 5277 6.545666 TGGTAATTTACAATCTATGGCCACTG 59.454 38.462 8.16 3.50 0.00 3.66
4669 5278 6.016276 GGTAATTTACAATCTATGGCCACTGG 60.016 42.308 8.16 0.38 0.00 4.00
4683 5292 1.545582 CCACTGGCATGGTTTACAAGG 59.454 52.381 0.00 0.00 34.77 3.61
4684 5293 1.067635 CACTGGCATGGTTTACAAGGC 60.068 52.381 0.00 0.00 42.90 4.35
4685 5294 0.171007 CTGGCATGGTTTACAAGGCG 59.829 55.000 0.00 0.00 45.20 5.52
4686 5295 1.247419 TGGCATGGTTTACAAGGCGG 61.247 55.000 0.00 0.00 45.20 6.13
4687 5296 1.248101 GGCATGGTTTACAAGGCGGT 61.248 55.000 0.00 0.00 33.64 5.68
4688 5297 1.455248 GCATGGTTTACAAGGCGGTA 58.545 50.000 0.00 0.00 0.00 4.02
4689 5298 1.813786 GCATGGTTTACAAGGCGGTAA 59.186 47.619 0.00 1.45 0.00 2.85
4690 5299 2.229302 GCATGGTTTACAAGGCGGTAAA 59.771 45.455 11.72 11.72 40.04 2.01
4691 5300 3.672241 GCATGGTTTACAAGGCGGTAAAG 60.672 47.826 14.85 7.30 42.20 1.85
4693 5302 1.135888 GGTTTACAAGGCGGTAAAGCG 60.136 52.381 21.87 0.00 45.77 4.68
4694 5303 1.799994 GTTTACAAGGCGGTAAAGCGA 59.200 47.619 14.85 0.00 42.20 4.93
4695 5304 1.431496 TTACAAGGCGGTAAAGCGAC 58.569 50.000 5.64 1.81 38.18 5.19
4696 5305 0.390209 TACAAGGCGGTAAAGCGACC 60.390 55.000 3.39 5.47 38.18 4.79
4697 5306 1.375523 CAAGGCGGTAAAGCGACCT 60.376 57.895 3.39 7.64 37.34 3.85
4698 5307 0.108520 CAAGGCGGTAAAGCGACCTA 60.109 55.000 14.65 0.00 37.34 3.08
4699 5308 0.609662 AAGGCGGTAAAGCGACCTAA 59.390 50.000 14.65 0.00 37.34 2.69
4700 5309 0.609662 AGGCGGTAAAGCGACCTAAA 59.390 50.000 13.30 0.00 37.34 1.85
4701 5310 1.004595 GGCGGTAAAGCGACCTAAAG 58.995 55.000 5.64 0.00 37.34 1.85
4702 5311 1.673923 GGCGGTAAAGCGACCTAAAGT 60.674 52.381 5.64 0.00 37.34 2.66
4703 5312 1.392510 GCGGTAAAGCGACCTAAAGTG 59.607 52.381 5.64 0.00 37.34 3.16
4704 5313 2.927871 GCGGTAAAGCGACCTAAAGTGA 60.928 50.000 5.64 0.00 37.34 3.41
4705 5314 2.921754 CGGTAAAGCGACCTAAAGTGAG 59.078 50.000 0.00 0.00 37.34 3.51
4706 5315 2.671888 GGTAAAGCGACCTAAAGTGAGC 59.328 50.000 0.00 0.00 36.47 4.26
4707 5316 2.543777 AAAGCGACCTAAAGTGAGCA 57.456 45.000 0.00 0.00 32.68 4.26
4708 5317 1.797025 AAGCGACCTAAAGTGAGCAC 58.203 50.000 0.00 0.00 32.68 4.40
4709 5318 0.037232 AGCGACCTAAAGTGAGCACC 60.037 55.000 0.00 0.00 32.68 5.01
4710 5319 1.352156 GCGACCTAAAGTGAGCACCG 61.352 60.000 0.00 0.00 0.00 4.94
4711 5320 1.352156 CGACCTAAAGTGAGCACCGC 61.352 60.000 0.00 0.00 0.00 5.68
4712 5321 0.037232 GACCTAAAGTGAGCACCGCT 60.037 55.000 0.00 0.00 43.88 5.52
4721 5330 4.427661 AGCACCGCTCGCTCTGAC 62.428 66.667 0.00 0.00 33.35 3.51
4725 5334 4.785512 CCGCTCGCTCTGACGCTT 62.786 66.667 0.00 0.00 0.00 4.68
4726 5335 2.100410 CGCTCGCTCTGACGCTTA 59.900 61.111 0.00 0.00 0.00 3.09
4727 5336 1.514228 CGCTCGCTCTGACGCTTAA 60.514 57.895 0.00 0.00 0.00 1.85
4728 5337 1.467556 CGCTCGCTCTGACGCTTAAG 61.468 60.000 0.00 0.00 0.00 1.85
4729 5338 1.747686 GCTCGCTCTGACGCTTAAGC 61.748 60.000 17.83 17.83 37.78 3.09
4749 5358 2.678324 CGAAGCCTAAGTGCCTATAGC 58.322 52.381 0.00 0.00 44.14 2.97
4764 5373 4.950050 CCTATAGCGGGCATATTCCTAAG 58.050 47.826 0.00 0.00 0.00 2.18
4765 5374 3.914426 ATAGCGGGCATATTCCTAAGG 57.086 47.619 0.00 0.00 0.00 2.69
4766 5375 0.036875 AGCGGGCATATTCCTAAGGC 59.963 55.000 0.00 0.00 0.00 4.35
4767 5376 1.298859 GCGGGCATATTCCTAAGGCG 61.299 60.000 0.00 0.00 0.00 5.52
4768 5377 1.298859 CGGGCATATTCCTAAGGCGC 61.299 60.000 0.00 0.00 0.00 6.53
4769 5378 0.036875 GGGCATATTCCTAAGGCGCT 59.963 55.000 7.64 0.00 34.95 5.92
4770 5379 1.160137 GGCATATTCCTAAGGCGCTG 58.840 55.000 7.64 0.00 0.00 5.18
4771 5380 0.519077 GCATATTCCTAAGGCGCTGC 59.481 55.000 7.64 0.37 0.00 5.25
4784 5393 4.883354 GCTGCCAGGGCGCCTTAT 62.883 66.667 28.56 10.23 45.51 1.73
4785 5394 2.124151 CTGCCAGGGCGCCTTATT 60.124 61.111 28.56 6.95 45.51 1.40
4786 5395 1.148273 CTGCCAGGGCGCCTTATTA 59.852 57.895 28.56 9.70 45.51 0.98
4787 5396 0.250901 CTGCCAGGGCGCCTTATTAT 60.251 55.000 28.56 2.50 45.51 1.28
4788 5397 0.250727 TGCCAGGGCGCCTTATTATC 60.251 55.000 28.56 7.55 45.51 1.75
4789 5398 0.036875 GCCAGGGCGCCTTATTATCT 59.963 55.000 28.56 10.17 0.00 1.98
4790 5399 1.946283 GCCAGGGCGCCTTATTATCTC 60.946 57.143 28.56 5.83 0.00 2.75
4791 5400 1.625818 CCAGGGCGCCTTATTATCTCT 59.374 52.381 28.56 8.48 0.00 3.10
4792 5401 2.039084 CCAGGGCGCCTTATTATCTCTT 59.961 50.000 28.56 0.00 0.00 2.85
4793 5402 3.260884 CCAGGGCGCCTTATTATCTCTTA 59.739 47.826 28.56 0.00 0.00 2.10
4794 5403 4.262894 CCAGGGCGCCTTATTATCTCTTAA 60.263 45.833 28.56 0.00 0.00 1.85
4795 5404 4.932200 CAGGGCGCCTTATTATCTCTTAAG 59.068 45.833 28.56 0.00 0.00 1.85
4796 5405 3.685272 GGGCGCCTTATTATCTCTTAAGC 59.315 47.826 28.56 0.00 0.00 3.09
4797 5406 4.563786 GGGCGCCTTATTATCTCTTAAGCT 60.564 45.833 28.56 0.00 0.00 3.74
4798 5407 4.998033 GGCGCCTTATTATCTCTTAAGCTT 59.002 41.667 22.15 3.48 0.00 3.74
4799 5408 5.120986 GGCGCCTTATTATCTCTTAAGCTTC 59.879 44.000 22.15 0.00 0.00 3.86
4800 5409 5.929415 GCGCCTTATTATCTCTTAAGCTTCT 59.071 40.000 0.00 0.00 0.00 2.85
4801 5410 6.128688 GCGCCTTATTATCTCTTAAGCTTCTG 60.129 42.308 0.00 0.00 0.00 3.02
4802 5411 7.148641 CGCCTTATTATCTCTTAAGCTTCTGA 58.851 38.462 0.00 1.30 0.00 3.27
4803 5412 7.653713 CGCCTTATTATCTCTTAAGCTTCTGAA 59.346 37.037 0.00 0.00 0.00 3.02
4804 5413 8.987890 GCCTTATTATCTCTTAAGCTTCTGAAG 58.012 37.037 13.02 13.02 0.00 3.02
4858 5467 1.215173 AGGCATTAGCTGGGCATTACA 59.785 47.619 0.00 0.00 41.70 2.41
4862 5471 4.053295 GCATTAGCTGGGCATTACAATTG 58.947 43.478 3.24 3.24 37.91 2.32
4875 5484 5.120830 GCATTACAATTGTGAGAGAGTTCGT 59.879 40.000 21.42 0.00 0.00 3.85
4923 5532 8.668510 TGAGATATTCCTGTCATTTAGCTTTC 57.331 34.615 0.00 0.00 0.00 2.62
4936 5545 1.379576 GCTTTCCAGCCTCATGCCT 60.380 57.895 0.00 0.00 40.61 4.75
4950 5559 6.055588 GCCTCATGCCTCTTACATTACTTTA 58.944 40.000 0.00 0.00 0.00 1.85
4959 5568 8.874816 GCCTCTTACATTACTTTACTTCTGAAG 58.125 37.037 15.59 15.59 0.00 3.02
5041 5658 8.677148 TGATCTTTTCCCAGCAATATTAGTAC 57.323 34.615 0.00 0.00 0.00 2.73
5045 5662 7.441157 TCTTTTCCCAGCAATATTAGTACGATG 59.559 37.037 0.00 0.00 0.00 3.84
5107 5836 6.825213 TGAGCACAATATCAGTAGCATTTTCT 59.175 34.615 0.00 0.00 0.00 2.52
5108 5837 7.337689 TGAGCACAATATCAGTAGCATTTTCTT 59.662 33.333 0.00 0.00 0.00 2.52
5110 5839 8.526147 AGCACAATATCAGTAGCATTTTCTTTT 58.474 29.630 0.00 0.00 0.00 2.27
5255 5992 9.293404 GGGGTAAATCTTTAGTTTTACTTCTGT 57.707 33.333 16.82 0.00 38.89 3.41
5266 6003 7.840342 AGTTTTACTTCTGTCATCTATGCTG 57.160 36.000 0.00 0.00 0.00 4.41
5267 6004 6.314896 AGTTTTACTTCTGTCATCTATGCTGC 59.685 38.462 0.00 0.00 0.00 5.25
5296 6033 6.134535 ACTTGGTTTGGATGGTCTACATTA 57.865 37.500 0.00 0.00 40.72 1.90
5301 6053 5.885912 GGTTTGGATGGTCTACATTACATGT 59.114 40.000 2.69 2.69 46.92 3.21
5338 6090 6.304356 TCTTGTTCAGAATGTGCTTAAGTG 57.696 37.500 4.02 0.00 37.40 3.16
5354 6106 1.129058 AGTGTTTCTTCCCACGAGGT 58.871 50.000 0.00 0.00 36.69 3.85
5377 6129 7.118390 AGGTTTACATTCTCTCTGTTGATTTCG 59.882 37.037 0.00 0.00 0.00 3.46
5386 6138 4.745125 TCTCTGTTGATTTCGTTGACAGAC 59.255 41.667 0.74 0.00 41.09 3.51
5508 6260 9.793252 CAAGGTTAATTTTCATCACTTCCATAG 57.207 33.333 0.00 0.00 0.00 2.23
5633 6561 8.484641 TGTCTTGTAGCAAGAGAATCAATAAG 57.515 34.615 11.32 0.00 37.82 1.73
5635 6563 8.386606 GTCTTGTAGCAAGAGAATCAATAAGTG 58.613 37.037 11.32 0.00 37.82 3.16
5655 6593 1.737793 GCACAACTGGAGGAATAACCG 59.262 52.381 0.00 0.00 44.74 4.44
5670 6608 6.774170 AGGAATAACCGGAAACAAGTTACTTT 59.226 34.615 9.46 0.00 44.74 2.66
5707 6645 6.369615 CCAAATCAGGTTTTGGCATTAAGAAG 59.630 38.462 8.48 0.00 46.59 2.85
5721 6659 8.719596 TGGCATTAAGAAGTAGGAATATGGTTA 58.280 33.333 0.00 0.00 0.00 2.85
5797 6735 5.151454 TGGTTATTCCAATTGTGGGAAACT 58.849 37.500 4.43 0.00 46.76 2.66
5860 6800 3.445008 TCAGAGAAGCTAATGAGGGTGT 58.555 45.455 0.00 0.00 0.00 4.16
5887 6827 4.466726 ACCTAAAACTAGGCCTACACAGAG 59.533 45.833 8.91 1.72 40.90 3.35
5951 6963 0.984230 CCTGCCTGGTCCAGAACTTA 59.016 55.000 21.23 0.87 32.44 2.24
5967 6979 1.493022 ACTTAAACACAGGTGGGCTGA 59.507 47.619 4.24 0.00 34.19 4.26
5969 6981 0.250727 TAAACACAGGTGGGCTGAGC 60.251 55.000 0.00 0.00 34.19 4.26
5971 6983 4.320456 CACAGGTGGGCTGAGCGT 62.320 66.667 0.00 0.00 0.00 5.07
5993 7006 2.758979 GCACTCCACACCTAGCTAACTA 59.241 50.000 0.00 0.00 0.00 2.24
6008 7021 2.371910 AACTAAGCAACGCTCTCTCC 57.628 50.000 0.00 0.00 38.25 3.71
6009 7022 1.257743 ACTAAGCAACGCTCTCTCCA 58.742 50.000 0.00 0.00 38.25 3.86
6010 7023 1.203523 ACTAAGCAACGCTCTCTCCAG 59.796 52.381 0.00 0.00 38.25 3.86
6011 7024 1.203523 CTAAGCAACGCTCTCTCCAGT 59.796 52.381 0.00 0.00 38.25 4.00
6038 7055 4.656575 CCCTGTTAAAGAAAAGGGGGAAAA 59.343 41.667 5.14 0.00 44.94 2.29
6043 7060 8.040002 TGTTAAAGAAAAGGGGGAAAATGAAT 57.960 30.769 0.00 0.00 0.00 2.57
6081 7099 2.657143 ACCTAAAAAGCCGTGAAACCA 58.343 42.857 0.00 0.00 0.00 3.67
6083 7101 2.030274 CCTAAAAAGCCGTGAAACCAGG 60.030 50.000 0.00 0.00 0.00 4.45
6125 7151 2.032924 CACCACAGTTCCCTTTCGTTTC 59.967 50.000 0.00 0.00 0.00 2.78
6152 7178 1.956477 GACAAAACATCAGGTGCTGGT 59.044 47.619 0.00 0.00 31.51 4.00
6167 7193 2.290832 TGCTGGTTATCTGGCATTGTGA 60.291 45.455 0.00 0.00 0.00 3.58
6170 7196 4.012374 CTGGTTATCTGGCATTGTGACTT 58.988 43.478 0.00 0.00 0.00 3.01
6286 7312 8.231692 TCACTGACCTTATTGTGAAATTCAAA 57.768 30.769 0.00 0.00 36.64 2.69
6455 7481 3.586892 GACCTAGTTGTAAGTCAGCCAC 58.413 50.000 0.00 0.00 0.00 5.01
6474 7500 3.244353 CCACAGATGACTTTCACTGTCCT 60.244 47.826 0.00 0.00 36.96 3.85
6553 7580 0.663688 CGTCTATCCCAGGTGTCTCG 59.336 60.000 0.00 0.00 0.00 4.04
6661 7689 5.793030 TGTTTTATTCGATGGGTTTGGTT 57.207 34.783 0.00 0.00 0.00 3.67
6791 7826 5.235186 CAGATCTTGTAATGATTCACCGACC 59.765 44.000 0.00 0.00 29.94 4.79
6852 7889 2.565841 GTTTCCACAGAGCAGTGTCTT 58.434 47.619 0.00 0.00 37.82 3.01
6976 8013 4.735985 TGATGCTTTTCCATGTGAATTCG 58.264 39.130 0.04 0.00 31.67 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.359194 AATTGTATGGGACGAGACAGAAT 57.641 39.130 0.00 0.00 0.00 2.40
13 14 3.877508 GCACTGTAGGAATTGTATGGGAC 59.122 47.826 0.00 0.00 0.00 4.46
24 25 2.635427 TGTATGTGGTGCACTGTAGGAA 59.365 45.455 17.98 0.00 35.11 3.36
33 34 4.278975 TGTATGTCTTGTATGTGGTGCA 57.721 40.909 0.00 0.00 0.00 4.57
34 35 4.875536 TCATGTATGTCTTGTATGTGGTGC 59.124 41.667 0.00 0.00 0.00 5.01
35 36 7.254898 GGAATCATGTATGTCTTGTATGTGGTG 60.255 40.741 0.00 0.00 0.00 4.17
36 37 6.767902 GGAATCATGTATGTCTTGTATGTGGT 59.232 38.462 0.00 0.00 0.00 4.16
37 38 6.994496 AGGAATCATGTATGTCTTGTATGTGG 59.006 38.462 0.00 0.00 0.00 4.17
79 81 1.000506 TGGTAAGTGACTGAAGCGGAC 59.999 52.381 0.00 0.00 0.00 4.79
542 552 4.005978 TCCCCTTCGCCTCCTCCA 62.006 66.667 0.00 0.00 0.00 3.86
716 726 2.059190 GTTCCTCCGGGACCTCTCC 61.059 68.421 0.00 0.00 42.05 3.71
835 845 2.738587 TAAACCCAAAGCCACACTCA 57.261 45.000 0.00 0.00 0.00 3.41
901 1252 3.238497 CCAGTCACGGGTCCACCA 61.238 66.667 0.00 0.00 40.22 4.17
967 1320 2.685897 CAACTTTTGACCCGGAAACAGA 59.314 45.455 0.73 0.00 0.00 3.41
978 1331 2.869233 TGCCTGCTTCAACTTTTGAC 57.131 45.000 0.00 0.00 39.87 3.18
979 1332 3.883830 TTTGCCTGCTTCAACTTTTGA 57.116 38.095 0.00 0.00 38.04 2.69
980 1333 4.260866 CCATTTTGCCTGCTTCAACTTTTG 60.261 41.667 0.00 0.00 0.00 2.44
981 1334 3.878699 CCATTTTGCCTGCTTCAACTTTT 59.121 39.130 0.00 0.00 0.00 2.27
991 1348 0.671472 GCAACCTCCATTTTGCCTGC 60.671 55.000 0.00 0.00 41.95 4.85
1225 1582 0.185416 ATCCGGATCTACACTCGGGT 59.815 55.000 12.38 0.00 42.44 5.28
1255 1612 2.052782 AAACAGTTCAAGAACCCGCT 57.947 45.000 9.20 0.00 42.06 5.52
1258 1615 2.430694 AGCCAAAACAGTTCAAGAACCC 59.569 45.455 9.20 0.00 42.06 4.11
1262 1619 4.215399 CGGATAAGCCAAAACAGTTCAAGA 59.785 41.667 0.00 0.00 35.94 3.02
1292 1649 1.599542 GCAGAAACACAGACACAGACC 59.400 52.381 0.00 0.00 0.00 3.85
1353 1710 5.180680 GGTCATTAAACACTGTACCTTCACC 59.819 44.000 0.00 0.00 0.00 4.02
1364 1721 8.232913 AACACTAATTGTGGTCATTAAACACT 57.767 30.769 11.15 0.00 44.54 3.55
1380 1737 7.040892 GGGAAACTTTACTCGGAAACACTAATT 60.041 37.037 0.00 0.00 0.00 1.40
1545 1910 7.104326 TGCAAAGATAGAAAATCGCAAAAAC 57.896 32.000 0.00 0.00 0.00 2.43
1572 1942 1.065926 GTTGGGACCTAACTAACCCCG 60.066 57.143 13.20 0.00 41.44 5.73
1631 2002 4.826733 TGGTCAGCAAATTAGAAGCTTCAA 59.173 37.500 27.57 18.82 36.26 2.69
1661 2033 7.149202 TCCTTAACAATCTGGTAGGCATTAT 57.851 36.000 0.00 0.00 0.00 1.28
1663 2035 5.440610 CTCCTTAACAATCTGGTAGGCATT 58.559 41.667 0.00 0.00 0.00 3.56
1668 2040 5.875359 GTGTTCCTCCTTAACAATCTGGTAG 59.125 44.000 0.00 0.00 38.50 3.18
1680 2052 2.158219 TGTCTCCCAGTGTTCCTCCTTA 60.158 50.000 0.00 0.00 0.00 2.69
1698 2070 3.973135 GCAATGAATCAGCGATGAATGTC 59.027 43.478 7.76 6.44 0.00 3.06
1738 2110 3.874392 AAACACAGCCATTCCATAAGC 57.126 42.857 0.00 0.00 0.00 3.09
1740 2112 6.719370 AGTAAGAAAACACAGCCATTCCATAA 59.281 34.615 0.00 0.00 0.00 1.90
1792 2164 3.130516 GGTTTACCCTTGCCTAGAAATGC 59.869 47.826 0.00 0.00 0.00 3.56
1793 2165 4.340617 TGGTTTACCCTTGCCTAGAAATG 58.659 43.478 0.00 0.00 34.29 2.32
1795 2167 4.141111 ACTTGGTTTACCCTTGCCTAGAAA 60.141 41.667 0.00 0.00 34.29 2.52
1812 2185 6.430000 ACAGCGATGACTTTTAATAACTTGGT 59.570 34.615 8.12 0.00 0.00 3.67
1816 2189 6.093633 GGGAACAGCGATGACTTTTAATAACT 59.906 38.462 8.12 0.00 0.00 2.24
1821 2194 4.015872 AGGGAACAGCGATGACTTTTAA 57.984 40.909 8.12 0.00 0.00 1.52
1827 2200 2.426024 TGTAGTAGGGAACAGCGATGAC 59.574 50.000 8.12 0.26 0.00 3.06
1904 2277 6.827586 ACAAAAGTAACAACCAACAAGAGA 57.172 33.333 0.00 0.00 0.00 3.10
1956 2329 5.407407 AGCATACCGATAAATCCCAGTAG 57.593 43.478 0.00 0.00 0.00 2.57
1986 2359 6.343716 TGCACATCCATAAAACACAAAGAT 57.656 33.333 0.00 0.00 0.00 2.40
1993 2366 6.071503 TCACATGAATGCACATCCATAAAACA 60.072 34.615 0.00 0.00 0.00 2.83
2001 2374 3.488721 GCTCTTCACATGAATGCACATCC 60.489 47.826 0.00 0.00 35.22 3.51
2003 2376 3.086282 TGCTCTTCACATGAATGCACAT 58.914 40.909 14.45 0.00 37.96 3.21
2015 2388 9.690434 CGATAGTTATTTTACTTTGCTCTTCAC 57.310 33.333 0.00 0.00 0.00 3.18
2056 2429 0.321671 ACTTGACCACATCGTCAGGG 59.678 55.000 5.92 0.00 43.39 4.45
2059 2432 2.364002 TCAGAACTTGACCACATCGTCA 59.636 45.455 0.00 0.00 40.98 4.35
2060 2433 2.989840 CTCAGAACTTGACCACATCGTC 59.010 50.000 0.00 0.00 0.00 4.20
2061 2434 2.868044 GCTCAGAACTTGACCACATCGT 60.868 50.000 0.00 0.00 0.00 3.73
2062 2435 1.728971 GCTCAGAACTTGACCACATCG 59.271 52.381 0.00 0.00 0.00 3.84
2065 2438 1.486310 AGTGCTCAGAACTTGACCACA 59.514 47.619 5.66 0.00 42.41 4.17
2066 2439 2.246719 AGTGCTCAGAACTTGACCAC 57.753 50.000 0.00 0.00 40.97 4.16
2069 2444 5.582665 CCCTATTAAGTGCTCAGAACTTGAC 59.417 44.000 8.51 0.00 38.32 3.18
2077 2452 6.360618 AGGAAATTCCCTATTAAGTGCTCAG 58.639 40.000 8.66 0.00 37.19 3.35
2214 2640 8.871629 AGGGTACAAATGTTACATCATAACAA 57.128 30.769 0.00 0.00 40.32 2.83
2269 2701 4.438065 CGATGATCAGGGCTACGATCTAAG 60.438 50.000 0.09 0.00 39.06 2.18
2270 2702 3.440522 CGATGATCAGGGCTACGATCTAA 59.559 47.826 0.09 0.00 39.06 2.10
2292 2731 1.686052 TGCAAACTTGGATGGGTGTTC 59.314 47.619 0.00 0.00 0.00 3.18
2341 2780 7.482169 TTCATAGTCTTTCATAGTCTGGTGT 57.518 36.000 0.00 0.00 0.00 4.16
2406 2855 6.909357 GCTGAGTAATGAATTCACAGCAATAC 59.091 38.462 29.10 17.55 45.33 1.89
2455 2919 3.059120 GCTTTGGTAGGAAACGTTCAGTC 60.059 47.826 0.00 0.00 0.00 3.51
2462 2926 2.480419 CTCAGTGCTTTGGTAGGAAACG 59.520 50.000 0.00 0.00 0.00 3.60
2474 2938 3.683847 GCATATGTTCCTCCTCAGTGCTT 60.684 47.826 4.29 0.00 0.00 3.91
2569 3040 6.127338 CCATTTCTATGATCCTCAGCGGTATA 60.127 42.308 0.00 0.00 33.37 1.47
2573 3044 3.244353 ACCATTTCTATGATCCTCAGCGG 60.244 47.826 0.00 0.00 33.37 5.52
2575 3046 6.107901 AGTACCATTTCTATGATCCTCAGC 57.892 41.667 0.00 0.00 33.37 4.26
2576 3047 6.496565 AGGAGTACCATTTCTATGATCCTCAG 59.503 42.308 0.00 0.00 38.94 3.35
2577 3048 6.268617 CAGGAGTACCATTTCTATGATCCTCA 59.731 42.308 0.00 0.00 38.94 3.86
2583 3054 5.243954 CCGATCAGGAGTACCATTTCTATGA 59.756 44.000 0.00 0.00 45.00 2.15
2609 3080 3.563390 GCATCCTGCCTAAAGAAGATGAC 59.437 47.826 0.00 0.00 37.42 3.06
2651 3122 4.384056 GAGTGTCTTGCCATGCTACATAT 58.616 43.478 0.00 0.00 0.00 1.78
2698 3169 3.906014 TGTCACTCATATCGAGCTAGC 57.094 47.619 6.62 6.62 46.63 3.42
2722 3194 2.906939 GCGTCAGCATTGCCACACA 61.907 57.895 4.70 0.00 44.35 3.72
2723 3195 2.126734 GCGTCAGCATTGCCACAC 60.127 61.111 4.70 0.00 44.35 3.82
2756 3228 0.824759 GGTACTCTGCAGTAGTGGGG 59.175 60.000 21.70 0.00 35.67 4.96
2757 3229 1.557099 TGGTACTCTGCAGTAGTGGG 58.443 55.000 21.70 0.00 35.67 4.61
2758 3230 2.563179 ACTTGGTACTCTGCAGTAGTGG 59.437 50.000 21.70 9.37 35.67 4.00
2765 3237 5.238432 CACAAAATACACTTGGTACTCTGCA 59.762 40.000 0.00 0.00 34.07 4.41
2772 3244 8.508883 ACTTAACACACAAAATACACTTGGTA 57.491 30.769 0.00 0.00 36.16 3.25
2774 3246 9.959749 ATAACTTAACACACAAAATACACTTGG 57.040 29.630 0.00 0.00 0.00 3.61
2805 3278 5.645067 ACGGCGTACTATGACTAGCATAATA 59.355 40.000 12.58 1.57 38.92 0.98
2824 3297 5.845985 ACATCTTATATTCATGAACGGCG 57.154 39.130 11.07 4.80 0.00 6.46
2826 3299 8.620416 TCCAAAACATCTTATATTCATGAACGG 58.380 33.333 11.07 0.00 0.00 4.44
2849 3322 9.764363 GACATGTAGTTCATACTGAAATATCCA 57.236 33.333 0.00 0.00 38.84 3.41
2850 3323 9.988815 AGACATGTAGTTCATACTGAAATATCC 57.011 33.333 0.00 0.00 38.84 2.59
2856 3329 9.914131 GCATATAGACATGTAGTTCATACTGAA 57.086 33.333 0.00 0.00 35.78 3.02
2857 3330 9.077885 TGCATATAGACATGTAGTTCATACTGA 57.922 33.333 0.00 0.00 35.78 3.41
2858 3331 9.866798 ATGCATATAGACATGTAGTTCATACTG 57.133 33.333 0.00 0.00 35.78 2.74
2860 3333 9.014533 CGATGCATATAGACATGTAGTTCATAC 57.985 37.037 0.00 0.00 34.67 2.39
2861 3334 8.956426 TCGATGCATATAGACATGTAGTTCATA 58.044 33.333 0.00 0.00 34.67 2.15
2862 3335 7.830739 TCGATGCATATAGACATGTAGTTCAT 58.169 34.615 0.00 0.00 37.22 2.57
2863 3336 7.214467 TCGATGCATATAGACATGTAGTTCA 57.786 36.000 0.00 0.00 0.00 3.18
2864 3337 8.694975 ATTCGATGCATATAGACATGTAGTTC 57.305 34.615 0.00 0.00 0.00 3.01
2865 3338 9.494271 AAATTCGATGCATATAGACATGTAGTT 57.506 29.630 0.00 0.00 0.00 2.24
2869 3342 9.710900 TTCTAAATTCGATGCATATAGACATGT 57.289 29.630 0.00 0.00 0.00 3.21
2903 3376 9.911788 ACTCCATTCACAAATATAAGATGTTCT 57.088 29.630 0.00 0.00 0.00 3.01
2913 3386 9.023962 TGCTTTTTCTACTCCATTCACAAATAT 57.976 29.630 0.00 0.00 0.00 1.28
2914 3387 8.402798 TGCTTTTTCTACTCCATTCACAAATA 57.597 30.769 0.00 0.00 0.00 1.40
2915 3388 7.288810 TGCTTTTTCTACTCCATTCACAAAT 57.711 32.000 0.00 0.00 0.00 2.32
2916 3389 6.707440 TGCTTTTTCTACTCCATTCACAAA 57.293 33.333 0.00 0.00 0.00 2.83
2917 3390 6.899393 ATGCTTTTTCTACTCCATTCACAA 57.101 33.333 0.00 0.00 0.00 3.33
2918 3391 6.489700 TCAATGCTTTTTCTACTCCATTCACA 59.510 34.615 0.00 0.00 0.00 3.58
2919 3392 6.913170 TCAATGCTTTTTCTACTCCATTCAC 58.087 36.000 0.00 0.00 0.00 3.18
2920 3393 7.707624 ATCAATGCTTTTTCTACTCCATTCA 57.292 32.000 0.00 0.00 0.00 2.57
2921 3394 8.897752 AGTATCAATGCTTTTTCTACTCCATTC 58.102 33.333 0.00 0.00 0.00 2.67
2922 3395 8.680903 CAGTATCAATGCTTTTTCTACTCCATT 58.319 33.333 0.00 0.00 0.00 3.16
2923 3396 7.201767 GCAGTATCAATGCTTTTTCTACTCCAT 60.202 37.037 0.00 0.00 40.59 3.41
2924 3397 6.094048 GCAGTATCAATGCTTTTTCTACTCCA 59.906 38.462 0.00 0.00 40.59 3.86
2925 3398 6.458888 GGCAGTATCAATGCTTTTTCTACTCC 60.459 42.308 0.00 0.00 43.35 3.85
2926 3399 6.094048 TGGCAGTATCAATGCTTTTTCTACTC 59.906 38.462 0.00 0.00 43.35 2.59
2927 3400 5.945784 TGGCAGTATCAATGCTTTTTCTACT 59.054 36.000 0.00 0.00 43.35 2.57
2928 3401 6.194796 TGGCAGTATCAATGCTTTTTCTAC 57.805 37.500 0.00 0.00 43.35 2.59
2953 3426 6.155221 GTGCCCCATATCAGATATACTTCTCA 59.845 42.308 2.37 0.00 0.00 3.27
2959 3432 5.423015 CAGTGTGCCCCATATCAGATATAC 58.577 45.833 2.37 0.00 0.00 1.47
2984 3457 1.537202 GAGCAAGTAGGCAACCAACAG 59.463 52.381 0.00 0.00 35.83 3.16
2988 3461 0.324943 GAGGAGCAAGTAGGCAACCA 59.675 55.000 0.00 0.00 35.81 3.67
3020 3493 9.601217 TTAAGGAGCATCAAGACTTAGATAAAC 57.399 33.333 0.00 0.00 36.25 2.01
3041 3514 6.994496 TGCATCCTGAAATCAGAGTATTAAGG 59.006 38.462 11.94 0.00 46.59 2.69
3052 3525 6.532988 TGATTTGAATGCATCCTGAAATCA 57.467 33.333 17.00 17.00 36.44 2.57
3060 3533 8.963725 TGATAGGATTATGATTTGAATGCATCC 58.036 33.333 0.00 0.00 0.00 3.51
3097 3576 7.035840 AGCATATCTCAAATTTTACTGCCAG 57.964 36.000 0.00 0.00 0.00 4.85
3122 3601 9.325198 TCAGATTAGCGTGAAAATTGTATGTAT 57.675 29.630 0.00 0.00 0.00 2.29
3124 3603 7.609760 TCAGATTAGCGTGAAAATTGTATGT 57.390 32.000 0.00 0.00 0.00 2.29
3125 3604 8.177663 AGTTCAGATTAGCGTGAAAATTGTATG 58.822 33.333 0.00 0.00 34.52 2.39
3161 3640 7.412853 AATATAAGCAACGGTTAAAATGGGT 57.587 32.000 0.00 0.00 0.00 4.51
3195 3676 6.343703 TGAGCCATAGCATATATAACTGCAG 58.656 40.000 13.48 13.48 43.56 4.41
3267 3748 8.701908 ATGCATAACTTCCATGACTAAATGAT 57.298 30.769 0.00 0.00 0.00 2.45
3322 3805 5.184096 GGAATACAGTTCACTGACAGAGAGA 59.816 44.000 14.00 1.20 46.59 3.10
3389 3873 6.294120 GGAATAATCACATCAATGATGCCGAA 60.294 38.462 21.92 6.62 43.15 4.30
3392 3876 6.015688 AGTGGAATAATCACATCAATGATGCC 60.016 38.462 21.92 12.91 43.15 4.40
3396 3880 8.680001 CAAGAAGTGGAATAATCACATCAATGA 58.320 33.333 0.00 0.00 35.90 2.57
3447 3931 3.193267 TCAATGGGTTTGCAACTATGAGC 59.807 43.478 0.00 0.00 35.16 4.26
3502 4005 3.644265 TCTCAAGTAGGTAAGCCACAACA 59.356 43.478 0.00 0.00 37.19 3.33
3540 4043 1.728971 CAACAGCCATCTCACTCGTTC 59.271 52.381 0.00 0.00 0.00 3.95
3703 4206 2.605338 CGTTGTGGCATTCCAGTGAAAG 60.605 50.000 0.00 0.00 44.48 2.62
3708 4211 2.330254 CACGTTGTGGCATTCCAGT 58.670 52.632 0.00 0.00 44.48 4.00
3763 4350 6.126863 AGAGAATAGGTGTCACAATTCCAA 57.873 37.500 19.19 0.00 0.00 3.53
3835 4422 6.313658 GCAATCCCCAGCTAAATTAACTTTTG 59.686 38.462 0.00 0.00 0.00 2.44
3859 4446 2.295909 TGTCAAGGTTTGCAATACTGGC 59.704 45.455 0.00 0.00 0.00 4.85
3863 4450 5.466393 AGCATTTTGTCAAGGTTTGCAATAC 59.534 36.000 0.00 1.43 30.75 1.89
3876 4463 5.581126 ACTTTCTGTCAAGCATTTTGTCA 57.419 34.783 0.00 0.00 0.00 3.58
3896 4483 4.699257 GTGATCTTGATCTGGCTCAAAACT 59.301 41.667 11.31 0.00 34.86 2.66
3936 4523 7.284489 TGTTAAGCTAGAAACCAATTTGTGAGT 59.716 33.333 0.00 0.00 0.00 3.41
3969 4556 6.542370 GGAGCACTTGCATATAGTAAAAGGAA 59.458 38.462 3.62 0.00 45.16 3.36
3982 4569 2.165998 GGAAAAGAGGAGCACTTGCAT 58.834 47.619 3.62 0.00 45.16 3.96
3986 4573 3.560239 GCCTAAGGAAAAGAGGAGCACTT 60.560 47.826 0.00 0.00 31.45 3.16
3990 4577 2.290323 TGTGCCTAAGGAAAAGAGGAGC 60.290 50.000 0.00 0.00 31.45 4.70
3993 4580 2.437413 GGTGTGCCTAAGGAAAAGAGG 58.563 52.381 0.00 0.00 0.00 3.69
4000 4587 2.172505 CACATATGGGTGTGCCTAAGGA 59.827 50.000 7.80 0.00 42.51 3.36
4038 4626 6.149129 AGAATATGATTCTACAGTGTCGCA 57.851 37.500 0.00 0.00 0.00 5.10
4040 4628 7.918033 ACAGAAGAATATGATTCTACAGTGTCG 59.082 37.037 0.00 0.00 34.04 4.35
4078 4666 5.974108 TGGGAGTAAGTGTAATACTTCAGC 58.026 41.667 0.00 0.00 46.55 4.26
4142 4733 5.254115 TCATCTCCGACTTAAGAGAGAACA 58.746 41.667 20.46 11.94 42.19 3.18
4332 4928 6.763715 AATATGTGCTATTAGAAGTCCCCA 57.236 37.500 0.00 0.00 0.00 4.96
4333 4929 7.224297 TGAAATATGTGCTATTAGAAGTCCCC 58.776 38.462 0.00 0.00 29.63 4.81
4347 4945 9.577110 CATACAATATGGGATTGAAATATGTGC 57.423 33.333 4.36 0.00 33.51 4.57
4369 4967 3.187700 CTCACTGAAGGCGGTAACATAC 58.812 50.000 0.00 0.00 30.81 2.39
4434 5032 5.009210 TCCGGAACTCAACCTGTTAAAATTG 59.991 40.000 0.00 0.00 0.00 2.32
4638 5247 8.421002 GGCCATAGATTGTAAATTACCACAAAT 58.579 33.333 0.00 0.00 38.11 2.32
4644 5253 6.016276 CCAGTGGCCATAGATTGTAAATTACC 60.016 42.308 9.72 0.00 0.00 2.85
4664 5273 1.067635 GCCTTGTAAACCATGCCAGTG 60.068 52.381 0.00 0.00 0.00 3.66
4665 5274 1.256812 GCCTTGTAAACCATGCCAGT 58.743 50.000 0.00 0.00 0.00 4.00
4666 5275 0.171007 CGCCTTGTAAACCATGCCAG 59.829 55.000 0.00 0.00 0.00 4.85
4667 5276 1.247419 CCGCCTTGTAAACCATGCCA 61.247 55.000 0.00 0.00 0.00 4.92
4668 5277 1.248101 ACCGCCTTGTAAACCATGCC 61.248 55.000 0.00 0.00 0.00 4.40
4669 5278 1.455248 TACCGCCTTGTAAACCATGC 58.545 50.000 0.00 0.00 0.00 4.06
4670 5279 3.672241 GCTTTACCGCCTTGTAAACCATG 60.672 47.826 0.00 0.00 36.15 3.66
4671 5280 2.490509 GCTTTACCGCCTTGTAAACCAT 59.509 45.455 0.00 0.00 36.15 3.55
4672 5281 1.881324 GCTTTACCGCCTTGTAAACCA 59.119 47.619 0.00 0.00 36.15 3.67
4673 5282 1.135888 CGCTTTACCGCCTTGTAAACC 60.136 52.381 0.00 0.00 36.15 3.27
4674 5283 1.799994 TCGCTTTACCGCCTTGTAAAC 59.200 47.619 0.00 0.00 36.15 2.01
4675 5284 1.799994 GTCGCTTTACCGCCTTGTAAA 59.200 47.619 0.00 0.00 38.13 2.01
4676 5285 1.431496 GTCGCTTTACCGCCTTGTAA 58.569 50.000 0.00 0.00 0.00 2.41
4677 5286 0.390209 GGTCGCTTTACCGCCTTGTA 60.390 55.000 0.00 0.00 0.00 2.41
4678 5287 1.670083 GGTCGCTTTACCGCCTTGT 60.670 57.895 0.00 0.00 0.00 3.16
4679 5288 0.108520 TAGGTCGCTTTACCGCCTTG 60.109 55.000 0.00 0.00 44.77 3.61
4680 5289 0.609662 TTAGGTCGCTTTACCGCCTT 59.390 50.000 0.00 0.00 44.77 4.35
4681 5290 0.609662 TTTAGGTCGCTTTACCGCCT 59.390 50.000 0.00 0.00 44.77 5.52
4682 5291 1.004595 CTTTAGGTCGCTTTACCGCC 58.995 55.000 0.00 0.00 44.77 6.13
4683 5292 1.392510 CACTTTAGGTCGCTTTACCGC 59.607 52.381 0.00 0.00 44.77 5.68
4684 5293 2.921754 CTCACTTTAGGTCGCTTTACCG 59.078 50.000 0.00 0.00 44.77 4.02
4685 5294 2.671888 GCTCACTTTAGGTCGCTTTACC 59.328 50.000 0.00 0.00 40.06 2.85
4686 5295 3.123116 GTGCTCACTTTAGGTCGCTTTAC 59.877 47.826 0.00 0.00 0.00 2.01
4687 5296 3.323243 GTGCTCACTTTAGGTCGCTTTA 58.677 45.455 0.00 0.00 0.00 1.85
4688 5297 2.143925 GTGCTCACTTTAGGTCGCTTT 58.856 47.619 0.00 0.00 0.00 3.51
4689 5298 1.608283 GGTGCTCACTTTAGGTCGCTT 60.608 52.381 0.00 0.00 0.00 4.68
4690 5299 0.037232 GGTGCTCACTTTAGGTCGCT 60.037 55.000 0.00 0.00 0.00 4.93
4691 5300 1.352156 CGGTGCTCACTTTAGGTCGC 61.352 60.000 0.00 0.00 0.00 5.19
4692 5301 1.352156 GCGGTGCTCACTTTAGGTCG 61.352 60.000 0.00 0.00 0.00 4.79
4693 5302 0.037232 AGCGGTGCTCACTTTAGGTC 60.037 55.000 0.00 0.00 30.62 3.85
4694 5303 2.058675 AGCGGTGCTCACTTTAGGT 58.941 52.632 0.00 0.00 30.62 3.08
4708 5317 2.867333 TTAAGCGTCAGAGCGAGCGG 62.867 60.000 0.00 0.00 43.00 5.52
4709 5318 1.467556 CTTAAGCGTCAGAGCGAGCG 61.468 60.000 0.00 0.00 43.00 5.03
4710 5319 1.747686 GCTTAAGCGTCAGAGCGAGC 61.748 60.000 12.53 0.00 43.00 5.03
4711 5320 2.283254 GCTTAAGCGTCAGAGCGAG 58.717 57.895 12.53 0.00 43.00 5.03
4712 5321 4.478195 GCTTAAGCGTCAGAGCGA 57.522 55.556 12.53 0.00 43.00 4.93
4724 5333 1.734163 GGCACTTAGGCTTCGCTTAA 58.266 50.000 0.00 0.00 40.24 1.85
4725 5334 3.453559 GGCACTTAGGCTTCGCTTA 57.546 52.632 0.00 0.00 40.24 3.09
4726 5335 4.303257 GGCACTTAGGCTTCGCTT 57.697 55.556 0.00 0.00 40.24 4.68
4733 5342 0.037232 CCCGCTATAGGCACTTAGGC 60.037 60.000 1.04 0.00 41.75 3.93
4742 5351 4.202264 CCTTAGGAATATGCCCGCTATAGG 60.202 50.000 1.04 0.00 0.00 2.57
4743 5352 4.740934 GCCTTAGGAATATGCCCGCTATAG 60.741 50.000 0.69 0.00 0.00 1.31
4744 5353 3.134081 GCCTTAGGAATATGCCCGCTATA 59.866 47.826 0.69 0.00 0.00 1.31
4745 5354 2.092914 GCCTTAGGAATATGCCCGCTAT 60.093 50.000 0.69 0.00 0.00 2.97
4746 5355 1.278127 GCCTTAGGAATATGCCCGCTA 59.722 52.381 0.69 0.00 0.00 4.26
4747 5356 0.036875 GCCTTAGGAATATGCCCGCT 59.963 55.000 0.69 0.00 0.00 5.52
4748 5357 1.298859 CGCCTTAGGAATATGCCCGC 61.299 60.000 0.69 0.00 0.00 6.13
4749 5358 1.298859 GCGCCTTAGGAATATGCCCG 61.299 60.000 0.69 0.00 0.00 6.13
4750 5359 0.036875 AGCGCCTTAGGAATATGCCC 59.963 55.000 2.29 0.00 0.00 5.36
4751 5360 1.160137 CAGCGCCTTAGGAATATGCC 58.840 55.000 2.29 0.00 0.00 4.40
4752 5361 0.519077 GCAGCGCCTTAGGAATATGC 59.481 55.000 2.29 2.33 0.00 3.14
4753 5362 1.160137 GGCAGCGCCTTAGGAATATG 58.840 55.000 2.29 0.00 46.69 1.78
4754 5363 3.633361 GGCAGCGCCTTAGGAATAT 57.367 52.632 2.29 0.00 46.69 1.28
4770 5379 0.036875 AGATAATAAGGCGCCCTGGC 59.963 55.000 26.15 6.45 45.27 4.85
4771 5380 1.625818 AGAGATAATAAGGCGCCCTGG 59.374 52.381 26.15 0.00 32.13 4.45
4772 5381 3.409026 AAGAGATAATAAGGCGCCCTG 57.591 47.619 26.15 0.00 32.13 4.45
4773 5382 4.563786 GCTTAAGAGATAATAAGGCGCCCT 60.564 45.833 26.15 14.38 33.87 5.19
4774 5383 3.685272 GCTTAAGAGATAATAAGGCGCCC 59.315 47.826 26.15 5.49 0.00 6.13
4775 5384 4.570930 AGCTTAAGAGATAATAAGGCGCC 58.429 43.478 21.89 21.89 0.00 6.53
4776 5385 5.929415 AGAAGCTTAAGAGATAATAAGGCGC 59.071 40.000 6.67 0.00 0.00 6.53
4777 5386 7.148641 TCAGAAGCTTAAGAGATAATAAGGCG 58.851 38.462 6.67 0.00 0.00 5.52
4778 5387 8.894768 TTCAGAAGCTTAAGAGATAATAAGGC 57.105 34.615 6.67 0.00 0.00 4.35
4796 5405 6.872628 TTATAATGCATCCTGCTTCAGAAG 57.127 37.500 5.72 5.72 45.31 2.85
4797 5406 6.602803 TGTTTATAATGCATCCTGCTTCAGAA 59.397 34.615 0.00 0.00 45.31 3.02
4798 5407 6.121590 TGTTTATAATGCATCCTGCTTCAGA 58.878 36.000 0.00 0.00 45.31 3.27
4799 5408 6.381481 TGTTTATAATGCATCCTGCTTCAG 57.619 37.500 0.00 0.00 45.31 3.02
4800 5409 6.772360 TTGTTTATAATGCATCCTGCTTCA 57.228 33.333 0.00 0.00 45.31 3.02
4801 5410 6.643770 CCATTGTTTATAATGCATCCTGCTTC 59.356 38.462 0.00 0.00 45.31 3.86
4802 5411 6.324512 TCCATTGTTTATAATGCATCCTGCTT 59.675 34.615 0.00 0.00 45.31 3.91
4803 5412 5.834742 TCCATTGTTTATAATGCATCCTGCT 59.165 36.000 0.00 0.00 45.31 4.24
4804 5413 6.088016 TCCATTGTTTATAATGCATCCTGC 57.912 37.500 0.00 0.00 45.29 4.85
4805 5414 9.017509 AGTATCCATTGTTTATAATGCATCCTG 57.982 33.333 0.00 0.00 36.86 3.86
4816 5425 8.934697 TGCCTAACTCTAGTATCCATTGTTTAT 58.065 33.333 0.00 0.00 0.00 1.40
4817 5426 8.313944 TGCCTAACTCTAGTATCCATTGTTTA 57.686 34.615 0.00 0.00 0.00 2.01
4818 5427 7.195374 TGCCTAACTCTAGTATCCATTGTTT 57.805 36.000 0.00 0.00 0.00 2.83
4819 5428 6.808321 TGCCTAACTCTAGTATCCATTGTT 57.192 37.500 0.00 0.00 0.00 2.83
4820 5429 7.380423 AATGCCTAACTCTAGTATCCATTGT 57.620 36.000 0.00 0.00 0.00 2.71
4821 5430 7.547370 GCTAATGCCTAACTCTAGTATCCATTG 59.453 40.741 0.00 0.00 0.00 2.82
4822 5431 7.456269 AGCTAATGCCTAACTCTAGTATCCATT 59.544 37.037 0.00 0.00 40.80 3.16
4823 5432 6.957020 AGCTAATGCCTAACTCTAGTATCCAT 59.043 38.462 0.00 0.00 40.80 3.41
4824 5433 6.209589 CAGCTAATGCCTAACTCTAGTATCCA 59.790 42.308 0.00 0.00 40.80 3.41
4825 5434 6.350612 CCAGCTAATGCCTAACTCTAGTATCC 60.351 46.154 0.00 0.00 40.80 2.59
4826 5435 6.350612 CCCAGCTAATGCCTAACTCTAGTATC 60.351 46.154 0.00 0.00 40.80 2.24
4827 5436 5.482175 CCCAGCTAATGCCTAACTCTAGTAT 59.518 44.000 0.00 0.00 40.80 2.12
4858 5467 3.753294 ACCACGAACTCTCTCACAATT 57.247 42.857 0.00 0.00 0.00 2.32
4862 5471 2.034812 ACTCAACCACGAACTCTCTCAC 59.965 50.000 0.00 0.00 0.00 3.51
4875 5484 2.289694 GCTTCCAGCTAAGACTCAACCA 60.290 50.000 0.19 0.00 38.45 3.67
5065 5689 6.296026 TGTGCTCAGAACAAACTAAAGGTAT 58.704 36.000 0.00 0.00 0.00 2.73
5130 5859 8.704668 TGTTGGAGTATCTGCATTAAGAGAATA 58.295 33.333 0.00 0.00 30.73 1.75
5255 5992 5.104776 ACCAAGTAGAAAGCAGCATAGATGA 60.105 40.000 0.00 0.00 0.00 2.92
5266 6003 3.826729 ACCATCCAAACCAAGTAGAAAGC 59.173 43.478 0.00 0.00 0.00 3.51
5267 6004 5.316987 AGACCATCCAAACCAAGTAGAAAG 58.683 41.667 0.00 0.00 0.00 2.62
5338 6090 3.469739 TGTAAACCTCGTGGGAAGAAAC 58.530 45.455 8.63 0.00 38.76 2.78
5354 6106 7.962964 ACGAAATCAACAGAGAGAATGTAAA 57.037 32.000 0.00 0.00 0.00 2.01
5377 6129 2.039084 AGTGGGAAGATGGTCTGTCAAC 59.961 50.000 0.00 0.00 0.00 3.18
5386 6138 8.210946 TCAAACAGTATATAAGTGGGAAGATGG 58.789 37.037 0.00 0.00 32.29 3.51
5600 6352 4.523083 TCTTGCTACAAGACAGTTTGGTT 58.477 39.130 5.94 0.00 32.32 3.67
5602 6354 4.380531 TCTCTTGCTACAAGACAGTTTGG 58.619 43.478 5.94 0.00 32.32 3.28
5633 6561 2.488153 GGTTATTCCTCCAGTTGTGCAC 59.512 50.000 10.75 10.75 0.00 4.57
5635 6563 1.737793 CGGTTATTCCTCCAGTTGTGC 59.262 52.381 0.00 0.00 0.00 4.57
5840 6780 3.736433 CGACACCCTCATTAGCTTCTCTG 60.736 52.174 0.00 0.00 0.00 3.35
5891 6831 6.024563 TCCTTCATAAAAATGCCATAGGGA 57.975 37.500 0.00 0.00 35.59 4.20
5897 6837 5.569355 TGTCTCTCCTTCATAAAAATGCCA 58.431 37.500 0.00 0.00 0.00 4.92
5951 6963 1.529244 GCTCAGCCCACCTGTGTTT 60.529 57.895 0.00 0.00 42.38 2.83
5967 6979 2.159819 CTAGGTGTGGAGTGCACGCT 62.160 60.000 24.80 14.63 37.70 5.07
5969 6981 1.738099 GCTAGGTGTGGAGTGCACG 60.738 63.158 12.01 0.00 37.70 5.34
5971 6983 1.275291 GTTAGCTAGGTGTGGAGTGCA 59.725 52.381 4.27 0.00 0.00 4.57
5993 7006 0.037790 GACTGGAGAGAGCGTTGCTT 60.038 55.000 0.00 0.00 39.88 3.91
6000 7013 1.042559 CAGGGAGGACTGGAGAGAGC 61.043 65.000 0.00 0.00 34.84 4.09
6006 7019 3.269592 TCTTTAACAGGGAGGACTGGA 57.730 47.619 0.00 0.00 42.75 3.86
6007 7020 4.367039 TTTCTTTAACAGGGAGGACTGG 57.633 45.455 0.00 0.00 42.75 4.00
6008 7021 4.762251 CCTTTTCTTTAACAGGGAGGACTG 59.238 45.833 0.00 0.00 44.03 3.51
6009 7022 4.986783 CCTTTTCTTTAACAGGGAGGACT 58.013 43.478 0.00 0.00 0.00 3.85
6033 7050 8.084684 GGCCATATCTCAACTAATTCATTTTCC 58.915 37.037 0.00 0.00 0.00 3.13
6038 7055 7.238514 AGGTAGGCCATATCTCAACTAATTCAT 59.761 37.037 5.01 0.00 37.19 2.57
6043 7060 7.924358 TTTAGGTAGGCCATATCTCAACTAA 57.076 36.000 5.01 0.00 37.19 2.24
6081 7099 2.928801 TATTGCACCGCATATCACCT 57.071 45.000 0.00 0.00 38.76 4.00
6083 7101 3.498018 TGTCATATTGCACCGCATATCAC 59.502 43.478 0.00 0.00 38.76 3.06
6125 7151 2.878406 ACCTGATGTTTTGTCGGAACTG 59.122 45.455 0.00 0.00 0.00 3.16
6152 7178 7.936496 TTGATTAAGTCACAATGCCAGATAA 57.064 32.000 0.00 0.00 36.32 1.75
6167 7193 8.097038 TCTCAGTAATCAGTGCTTTGATTAAGT 58.903 33.333 18.63 10.66 46.17 2.24
6170 7196 8.260114 TCATCTCAGTAATCAGTGCTTTGATTA 58.740 33.333 15.14 15.14 43.93 1.75
6286 7312 7.120873 GGAGCTCATCATTAATGCTTGACATAT 59.879 37.037 17.19 0.00 38.34 1.78
6290 7316 4.577693 TGGAGCTCATCATTAATGCTTGAC 59.422 41.667 17.19 10.14 35.17 3.18
6455 7481 5.528690 TGAAAAGGACAGTGAAAGTCATCTG 59.471 40.000 0.00 0.00 37.74 2.90
6474 7500 7.174946 GGTGTTCTCTAGATGGTGAAATGAAAA 59.825 37.037 0.00 0.00 0.00 2.29
6606 7633 1.568504 TGCTCCCCTGAAGTAATCGT 58.431 50.000 0.00 0.00 0.00 3.73
6661 7689 1.753848 CTTGGATTGGATGGGCGCA 60.754 57.895 10.83 5.70 0.00 6.09
6791 7826 1.538512 ACTACTGCAGTGCAAAGCATG 59.461 47.619 29.57 8.77 41.91 4.06
6852 7889 3.118075 TGCCGAGATCCATACAAATTCCA 60.118 43.478 0.00 0.00 0.00 3.53
7042 8079 1.340399 TGGTGGTGGCCAAATGCAAA 61.340 50.000 7.24 0.00 43.89 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.