Multiple sequence alignment - TraesCS3D01G140300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G140300 chr3D 100.000 3525 0 0 1 3525 101550256 101546732 0.000000e+00 6510.0
1 TraesCS3D01G140300 chr3D 92.857 56 4 0 1 56 11563180 11563235 8.110000e-12 82.4
2 TraesCS3D01G140300 chr3D 84.211 76 11 1 1417 1492 101548779 101548705 4.880000e-09 73.1
3 TraesCS3D01G140300 chr3D 84.211 76 11 1 1478 1552 101548840 101548765 4.880000e-09 73.1
4 TraesCS3D01G140300 chr3A 92.042 2375 123 26 228 2562 554214451 554216799 0.000000e+00 3278.0
5 TraesCS3D01G140300 chr3A 81.048 248 32 10 3284 3525 11418443 11418205 2.160000e-42 183.0
6 TraesCS3D01G140300 chr3A 82.707 133 19 3 1 132 734150879 734151008 8.000000e-22 115.0
7 TraesCS3D01G140300 chr3B 93.991 2097 63 21 544 2611 152211220 152209158 0.000000e+00 3116.0
8 TraesCS3D01G140300 chr3B 85.246 366 25 14 2608 2972 152207906 152207569 2.010000e-92 350.0
9 TraesCS3D01G140300 chr3B 93.939 165 10 0 163 327 152212080 152211916 2.100000e-62 250.0
10 TraesCS3D01G140300 chr3B 96.250 80 2 1 479 558 152211317 152211239 2.860000e-26 130.0
11 TraesCS3D01G140300 chr3B 97.333 75 2 0 2754 2828 152187575 152187501 1.030000e-25 128.0
12 TraesCS3D01G140300 chr2D 90.488 1230 73 17 1069 2290 190366715 190367908 0.000000e+00 1583.0
13 TraesCS3D01G140300 chr2D 100.000 28 0 0 206 233 153329557 153329530 6.000000e-03 52.8
14 TraesCS3D01G140300 chr6D 92.547 899 55 6 1398 2290 86024127 86025019 0.000000e+00 1279.0
15 TraesCS3D01G140300 chr6D 90.698 301 16 2 1069 1364 86023632 86023925 1.190000e-104 390.0
16 TraesCS3D01G140300 chr6D 81.723 383 42 19 3120 3486 84289835 84289465 9.570000e-76 294.0
17 TraesCS3D01G140300 chr5D 90.847 437 40 0 1889 2325 36535427 36535863 1.410000e-163 586.0
18 TraesCS3D01G140300 chr5D 80.630 413 56 15 3118 3524 12229572 12229966 7.400000e-77 298.0
19 TraesCS3D01G140300 chr5D 85.714 217 23 8 3107 3318 371077737 371077950 4.580000e-54 222.0
20 TraesCS3D01G140300 chr1A 85.714 581 38 21 1069 1640 528932333 528932877 3.950000e-159 571.0
21 TraesCS3D01G140300 chr1A 88.194 432 32 5 1863 2290 528932875 528933291 6.800000e-137 497.0
22 TraesCS3D01G140300 chr1A 86.765 68 9 0 1422 1489 528932717 528932784 3.770000e-10 76.8
23 TraesCS3D01G140300 chr2B 82.028 434 56 14 3112 3525 647332564 647332995 2.010000e-92 350.0
24 TraesCS3D01G140300 chr6B 81.429 420 58 12 3117 3518 77149753 77150170 3.390000e-85 326.0
25 TraesCS3D01G140300 chr1D 81.022 411 58 13 3111 3508 2579286 2578883 3.420000e-80 309.0
26 TraesCS3D01G140300 chr1B 80.313 447 46 28 3118 3525 61453295 61452852 2.060000e-77 300.0
27 TraesCS3D01G140300 chrUn 80.348 402 59 15 3108 3494 33414 33810 1.600000e-73 287.0
28 TraesCS3D01G140300 chr6A 78.876 445 52 25 3111 3525 328527809 328527377 2.700000e-66 263.0
29 TraesCS3D01G140300 chr4A 82.490 257 36 8 3118 3369 743983818 743984070 2.130000e-52 217.0
30 TraesCS3D01G140300 chr4A 81.900 221 26 9 3270 3486 502867239 502867029 1.300000e-39 174.0
31 TraesCS3D01G140300 chr7A 76.904 407 56 25 3148 3524 55008340 55007942 2.780000e-46 196.0
32 TraesCS3D01G140300 chr7D 83.429 175 17 10 3286 3450 37424499 37424327 6.090000e-33 152.0
33 TraesCS3D01G140300 chr5B 86.111 108 7 4 2509 2611 689482390 689482494 3.720000e-20 110.0
34 TraesCS3D01G140300 chr4D 100.000 32 0 0 208 239 231214794 231214825 3.800000e-05 60.2
35 TraesCS3D01G140300 chr4B 94.737 38 1 1 203 239 323793134 323793171 1.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G140300 chr3D 101546732 101550256 3524 True 2218.733333 6510 89.4740 1 3525 3 chr3D.!!$R1 3524
1 TraesCS3D01G140300 chr3A 554214451 554216799 2348 False 3278.000000 3278 92.0420 228 2562 1 chr3A.!!$F1 2334
2 TraesCS3D01G140300 chr3B 152207569 152212080 4511 True 961.500000 3116 92.3565 163 2972 4 chr3B.!!$R2 2809
3 TraesCS3D01G140300 chr2D 190366715 190367908 1193 False 1583.000000 1583 90.4880 1069 2290 1 chr2D.!!$F1 1221
4 TraesCS3D01G140300 chr6D 86023632 86025019 1387 False 834.500000 1279 91.6225 1069 2290 2 chr6D.!!$F1 1221
5 TraesCS3D01G140300 chr1A 528932333 528933291 958 False 381.600000 571 86.8910 1069 2290 3 chr1A.!!$F1 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 1183 0.745486 CATGCACATCTCCGCCTCAA 60.745 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 4641 0.398098 TAGCCTGTAGCCCTGTACCC 60.398 60.0 0.0 0.0 45.47 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.537874 CCCCGAGGCTTAGACCGG 61.538 72.222 0.00 0.00 41.47 5.28
25 26 4.222847 CCCGAGGCTTAGACCGGC 62.223 72.222 0.00 0.00 40.56 6.13
26 27 4.570663 CCGAGGCTTAGACCGGCG 62.571 72.222 0.00 0.00 35.29 6.46
27 28 4.570663 CGAGGCTTAGACCGGCGG 62.571 72.222 27.06 27.06 33.69 6.13
28 29 4.893601 GAGGCTTAGACCGGCGGC 62.894 72.222 28.71 19.04 33.69 6.53
32 33 4.867599 CTTAGACCGGCGGCGTCC 62.868 72.222 30.09 20.04 0.00 4.79
59 60 4.798682 GGCGGAGGGAGGGAAGGA 62.799 72.222 0.00 0.00 0.00 3.36
60 61 3.157949 GCGGAGGGAGGGAAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
61 62 2.444895 CGGAGGGAGGGAAGGAGG 60.445 72.222 0.00 0.00 0.00 4.30
62 63 2.040359 GGAGGGAGGGAAGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
63 64 2.647949 GGAGGGAGGGAAGGAGGGA 61.648 68.421 0.00 0.00 0.00 4.20
64 65 1.074850 GAGGGAGGGAAGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
65 66 1.550374 AGGGAGGGAAGGAGGGAGA 60.550 63.158 0.00 0.00 0.00 3.71
66 67 1.074850 GGGAGGGAAGGAGGGAGAG 60.075 68.421 0.00 0.00 0.00 3.20
67 68 1.764454 GGAGGGAAGGAGGGAGAGC 60.764 68.421 0.00 0.00 0.00 4.09
68 69 2.042435 AGGGAAGGAGGGAGAGCG 60.042 66.667 0.00 0.00 0.00 5.03
69 70 3.855853 GGGAAGGAGGGAGAGCGC 61.856 72.222 0.00 0.00 0.00 5.92
70 71 4.214327 GGAAGGAGGGAGAGCGCG 62.214 72.222 0.00 0.00 0.00 6.86
71 72 3.141488 GAAGGAGGGAGAGCGCGA 61.141 66.667 12.10 0.00 0.00 5.87
72 73 3.418744 GAAGGAGGGAGAGCGCGAC 62.419 68.421 12.10 2.22 0.00 5.19
78 79 2.913060 GGAGAGCGCGACCCCTAT 60.913 66.667 12.10 0.00 0.00 2.57
79 80 1.602888 GGAGAGCGCGACCCCTATA 60.603 63.158 12.10 0.00 0.00 1.31
80 81 1.587933 GGAGAGCGCGACCCCTATAG 61.588 65.000 12.10 0.00 0.00 1.31
81 82 2.202703 GAGAGCGCGACCCCTATAGC 62.203 65.000 12.10 0.00 0.00 2.97
82 83 2.203509 AGCGCGACCCCTATAGCT 60.204 61.111 12.10 0.00 0.00 3.32
83 84 2.049063 GCGCGACCCCTATAGCTG 60.049 66.667 12.10 0.00 0.00 4.24
84 85 2.651361 CGCGACCCCTATAGCTGG 59.349 66.667 0.00 0.00 0.00 4.85
93 94 1.351350 CCCTATAGCTGGGTTTAGGGC 59.649 57.143 17.61 0.00 43.26 5.19
94 95 1.351350 CCTATAGCTGGGTTTAGGGCC 59.649 57.143 0.00 0.00 0.00 5.80
95 96 1.351350 CTATAGCTGGGTTTAGGGCCC 59.649 57.143 16.46 16.46 46.26 5.80
158 159 4.050553 CTCTGCTAGCTAGTTCATTCAGC 58.949 47.826 21.62 7.48 35.49 4.26
159 160 3.129871 CTGCTAGCTAGTTCATTCAGCC 58.870 50.000 21.62 2.01 35.88 4.85
160 161 2.158900 TGCTAGCTAGTTCATTCAGCCC 60.159 50.000 21.62 1.51 35.88 5.19
161 162 2.808567 GCTAGCTAGTTCATTCAGCCCC 60.809 54.545 21.62 0.00 35.88 5.80
226 227 9.408648 AGTAAACAAGTAATATGAATTGGAGGG 57.591 33.333 5.29 0.00 0.00 4.30
269 270 8.721478 TGAGATAAACTTTGTCATAAGTTGCTC 58.279 33.333 11.45 15.10 45.13 4.26
273 275 3.753272 ACTTTGTCATAAGTTGCTCGCAT 59.247 39.130 0.00 0.00 34.81 4.73
294 296 5.891551 GCATTTAGGGGGAAAAGTGAGAATA 59.108 40.000 0.00 0.00 0.00 1.75
327 329 5.134661 AGAAAATCTTAACCAACGGGACAA 58.865 37.500 0.00 0.00 38.05 3.18
328 330 5.773176 AGAAAATCTTAACCAACGGGACAAT 59.227 36.000 0.00 0.00 38.05 2.71
334 336 5.413213 TCTTAACCAACGGGACAATTGTATG 59.587 40.000 11.95 6.85 38.05 2.39
349 351 3.541996 TGTATGTGTGAGCATACCTGG 57.458 47.619 12.00 0.00 46.34 4.45
379 381 7.455058 TCAGTAAGTTTTGCTAATTCCCAGTA 58.545 34.615 0.00 0.00 0.00 2.74
439 543 5.316987 ACTTTAATTTAGTGAGCAGCTGGT 58.683 37.500 20.31 20.31 0.00 4.00
593 1082 4.498682 GCCAAGAATTCATGCATGGTCTAC 60.499 45.833 25.97 13.65 0.00 2.59
686 1183 0.745486 CATGCACATCTCCGCCTCAA 60.745 55.000 0.00 0.00 0.00 3.02
816 1313 1.390565 CCTGTCTACTCGGATCGGTT 58.609 55.000 0.00 0.00 0.00 4.44
908 1405 1.920574 CATTTACCACGCTCTCTCACG 59.079 52.381 0.00 0.00 0.00 4.35
999 1502 0.669619 TCGCCTGTGTCGTTCAGTTA 59.330 50.000 0.00 0.00 0.00 2.24
1016 1519 3.325135 CAGTTAACTCCACCTCTCCACTT 59.675 47.826 4.77 0.00 0.00 3.16
1035 1553 1.123861 TCACTCCCACTGAAGCAGCT 61.124 55.000 0.00 0.00 34.37 4.24
1036 1554 0.673022 CACTCCCACTGAAGCAGCTC 60.673 60.000 0.00 0.00 34.37 4.09
1038 1556 2.045536 CCCACTGAAGCAGCTCCC 60.046 66.667 0.00 0.00 34.37 4.30
1039 1557 2.752358 CCACTGAAGCAGCTCCCA 59.248 61.111 0.00 0.00 34.37 4.37
1040 1558 1.673665 CCACTGAAGCAGCTCCCAC 60.674 63.158 0.00 0.00 34.37 4.61
1041 1559 1.374190 CACTGAAGCAGCTCCCACT 59.626 57.895 0.00 0.00 34.37 4.00
1042 1560 0.954449 CACTGAAGCAGCTCCCACTG 60.954 60.000 0.00 0.00 40.80 3.66
1043 1561 1.123861 ACTGAAGCAGCTCCCACTGA 61.124 55.000 0.00 0.00 40.25 3.41
1044 1562 0.035881 CTGAAGCAGCTCCCACTGAA 59.964 55.000 0.00 0.00 40.25 3.02
1045 1563 0.035881 TGAAGCAGCTCCCACTGAAG 59.964 55.000 0.00 0.00 40.25 3.02
1046 1564 1.303155 AAGCAGCTCCCACTGAAGC 60.303 57.895 0.00 0.00 40.25 3.86
1047 1565 2.033141 GCAGCTCCCACTGAAGCA 59.967 61.111 0.00 0.00 40.25 3.91
1048 1566 2.039405 GCAGCTCCCACTGAAGCAG 61.039 63.158 0.00 0.00 40.25 4.24
1049 1567 2.039405 CAGCTCCCACTGAAGCAGC 61.039 63.158 0.00 0.00 40.25 5.25
1050 1568 3.123620 GCTCCCACTGAAGCAGCG 61.124 66.667 0.00 0.00 34.37 5.18
1051 1569 2.435586 CTCCCACTGAAGCAGCGG 60.436 66.667 0.00 0.00 34.37 5.52
1052 1570 4.704833 TCCCACTGAAGCAGCGGC 62.705 66.667 0.00 0.00 32.82 6.53
1266 1796 3.018149 TGGGTTATAACAAATGCCGTCC 58.982 45.455 17.16 6.41 0.00 4.79
1820 2544 0.179045 GGGACATGCGAGTAAGCCAT 60.179 55.000 0.00 0.00 36.02 4.40
1853 2585 6.894828 GGCACGTAACATTTTCTTTCTTCTA 58.105 36.000 0.00 0.00 0.00 2.10
1868 2600 4.871993 TCTTCTACGAATACCACGAGTC 57.128 45.455 0.00 0.00 34.70 3.36
1886 2618 2.536365 GTCAAGTCACTGACGTGTTGA 58.464 47.619 20.30 14.01 41.41 3.18
2123 2862 1.296715 GCTCAACTCCATGACCCGT 59.703 57.895 0.00 0.00 0.00 5.28
2228 2970 1.964373 GGCGGCCTCGTTCAAGAAA 60.964 57.895 12.87 0.00 38.89 2.52
2302 3046 6.351456 GCTTTAGCTAGCTGGCTACCTATATT 60.351 42.308 29.19 5.61 43.40 1.28
2359 3107 2.123990 CGTGTGCGTTTTGATGTGC 58.876 52.632 0.00 0.00 0.00 4.57
2360 3108 1.587457 CGTGTGCGTTTTGATGTGCG 61.587 55.000 0.00 0.00 0.00 5.34
2361 3109 0.591236 GTGTGCGTTTTGATGTGCGT 60.591 50.000 0.00 0.00 0.00 5.24
2362 3110 0.099613 TGTGCGTTTTGATGTGCGTT 59.900 45.000 0.00 0.00 0.00 4.84
2363 3111 1.196200 GTGCGTTTTGATGTGCGTTT 58.804 45.000 0.00 0.00 0.00 3.60
2364 3112 1.586123 GTGCGTTTTGATGTGCGTTTT 59.414 42.857 0.00 0.00 0.00 2.43
2388 3136 5.802956 TGATTTGGTTGTTTCGTTTGAGTTC 59.197 36.000 0.00 0.00 0.00 3.01
2464 3213 7.642586 CGTACTATGTGTTGTAATGAATCTCGA 59.357 37.037 0.00 0.00 0.00 4.04
2516 3266 7.445096 TGTCGCATTGAATGGAATATATGAAGT 59.555 33.333 7.35 0.00 0.00 3.01
2565 3319 7.146960 TGGTTTCCTTGGAGGGAATATGATATT 60.147 37.037 0.00 0.00 43.82 1.28
2599 3354 3.641437 TTTGCATATTCATTAGCGGCC 57.359 42.857 0.00 0.00 0.00 6.13
2603 3358 2.095059 GCATATTCATTAGCGGCCCTTG 60.095 50.000 0.00 0.00 0.00 3.61
2619 4630 5.627735 CGGCCCTTGCTACTATAATGATGAT 60.628 44.000 0.00 0.00 37.74 2.45
2630 4641 7.443302 ACTATAATGATGATATGTCCAGGGG 57.557 40.000 0.00 0.00 0.00 4.79
2631 4642 5.722172 ATAATGATGATATGTCCAGGGGG 57.278 43.478 0.00 0.00 0.00 5.40
2645 4656 3.643398 GGGGGTACAGGGCTACAG 58.357 66.667 0.00 0.00 0.00 2.74
2649 4660 0.398098 GGGTACAGGGCTACAGGCTA 60.398 60.000 2.57 0.00 41.46 3.93
2657 4668 1.347707 GGGCTACAGGCTATATGCACA 59.652 52.381 2.57 0.00 45.15 4.57
2661 4672 3.557898 GCTACAGGCTATATGCACATGGT 60.558 47.826 0.00 0.00 45.15 3.55
2693 4704 4.579340 TCATCGATCTGTCTACCCACTTAC 59.421 45.833 0.00 0.00 0.00 2.34
2715 4726 4.400884 ACAATTTTGGTAACTGTGTGCAGA 59.599 37.500 1.30 0.00 45.28 4.26
2717 4728 3.552132 TTTGGTAACTGTGTGCAGAGA 57.448 42.857 3.28 0.00 45.28 3.10
2723 4734 1.114627 ACTGTGTGCAGAGAGTGTGA 58.885 50.000 13.23 0.00 45.28 3.58
2724 4735 1.202463 ACTGTGTGCAGAGAGTGTGAC 60.202 52.381 13.23 0.00 45.28 3.67
2725 4736 0.823460 TGTGTGCAGAGAGTGTGACA 59.177 50.000 0.00 0.00 0.00 3.58
2726 4737 1.212616 GTGTGCAGAGAGTGTGACAC 58.787 55.000 7.83 7.83 35.67 3.67
2727 4738 0.823460 TGTGCAGAGAGTGTGACACA 59.177 50.000 18.95 3.56 36.74 3.72
2729 4740 2.279741 GTGCAGAGAGTGTGACACAAA 58.720 47.619 18.95 0.00 36.74 2.83
2730 4741 2.286294 GTGCAGAGAGTGTGACACAAAG 59.714 50.000 18.95 4.09 36.74 2.77
2731 4742 2.168313 TGCAGAGAGTGTGACACAAAGA 59.832 45.455 18.95 0.00 36.74 2.52
2732 4743 3.181462 TGCAGAGAGTGTGACACAAAGAT 60.181 43.478 18.95 0.00 36.74 2.40
2733 4744 3.186001 GCAGAGAGTGTGACACAAAGATG 59.814 47.826 18.95 10.45 36.74 2.90
2734 4745 3.186001 CAGAGAGTGTGACACAAAGATGC 59.814 47.826 18.95 0.00 36.74 3.91
2735 4746 3.133691 GAGAGTGTGACACAAAGATGCA 58.866 45.455 18.95 0.00 36.74 3.96
2736 4747 3.136763 AGAGTGTGACACAAAGATGCAG 58.863 45.455 18.95 0.00 36.74 4.41
2737 4748 1.605710 AGTGTGACACAAAGATGCAGC 59.394 47.619 18.95 0.00 36.74 5.25
2738 4749 1.605710 GTGTGACACAAAGATGCAGCT 59.394 47.619 10.50 0.00 34.08 4.24
2739 4750 1.875514 TGTGACACAAAGATGCAGCTC 59.124 47.619 4.22 0.00 0.00 4.09
2740 4751 1.136141 GTGACACAAAGATGCAGCTCG 60.136 52.381 4.22 1.78 0.00 5.03
2741 4752 1.151668 GACACAAAGATGCAGCTCGT 58.848 50.000 4.22 2.54 0.00 4.18
2742 4753 1.532868 GACACAAAGATGCAGCTCGTT 59.467 47.619 4.22 0.00 0.00 3.85
2743 4754 1.265095 ACACAAAGATGCAGCTCGTTG 59.735 47.619 4.22 10.06 39.54 4.10
2744 4755 0.239347 ACAAAGATGCAGCTCGTTGC 59.761 50.000 14.66 0.00 44.33 4.17
2809 4820 7.096884 AGAGGTTCAAACAAAAGGTAAGAAC 57.903 36.000 0.00 0.00 40.17 3.01
2831 4842 7.496591 AGAACACATAAACGAAAACCTTACAGA 59.503 33.333 0.00 0.00 0.00 3.41
2839 4850 4.396790 ACGAAAACCTTACAGAAGCACAAA 59.603 37.500 0.00 0.00 0.00 2.83
2867 4878 6.294397 GCTTCATCAAAGTGAAATGAGACCTT 60.294 38.462 0.00 0.00 37.63 3.50
2868 4879 7.587037 TTCATCAAAGTGAAATGAGACCTTT 57.413 32.000 0.00 0.00 35.31 3.11
2880 4891 5.789643 ATGAGACCTTTTTGCAGCTTTTA 57.210 34.783 0.00 0.00 0.00 1.52
2884 4895 4.038042 AGACCTTTTTGCAGCTTTTAGGAC 59.962 41.667 10.09 5.34 0.00 3.85
2899 4910 2.457366 AGGACAACGACATGTTCTCC 57.543 50.000 0.00 0.08 43.76 3.71
2914 4925 0.178944 TCTCCGGGGAACTCTGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
2923 4934 2.999355 GGAACTCTGTTGAGATCTGCAC 59.001 50.000 0.00 0.00 42.73 4.57
2925 4936 1.973515 ACTCTGTTGAGATCTGCACCA 59.026 47.619 0.00 0.00 42.73 4.17
2972 4983 0.036875 ACAGAAGTAGGGGCACAAGC 59.963 55.000 0.00 0.00 41.10 4.01
2973 4984 0.036732 CAGAAGTAGGGGCACAAGCA 59.963 55.000 0.00 0.00 44.61 3.91
2974 4985 0.036875 AGAAGTAGGGGCACAAGCAC 59.963 55.000 0.00 0.00 45.89 4.40
2982 4993 2.993264 GCACAAGCACAGCCCCAT 60.993 61.111 0.00 0.00 41.58 4.00
2983 4994 2.576832 GCACAAGCACAGCCCCATT 61.577 57.895 0.00 0.00 41.58 3.16
2984 4995 1.290955 CACAAGCACAGCCCCATTG 59.709 57.895 0.00 0.00 0.00 2.82
2985 4996 2.263540 CAAGCACAGCCCCATTGC 59.736 61.111 0.00 0.00 36.45 3.56
2992 5003 3.384348 AGCCCCATTGCTGCTTTG 58.616 55.556 0.00 0.00 40.90 2.77
2993 5004 1.228956 AGCCCCATTGCTGCTTTGA 60.229 52.632 0.00 0.00 40.90 2.69
2994 5005 0.616679 AGCCCCATTGCTGCTTTGAT 60.617 50.000 0.00 0.00 40.90 2.57
2995 5006 1.113788 GCCCCATTGCTGCTTTGATA 58.886 50.000 0.00 0.00 0.00 2.15
2996 5007 1.481772 GCCCCATTGCTGCTTTGATAA 59.518 47.619 0.00 0.00 0.00 1.75
2997 5008 2.103601 GCCCCATTGCTGCTTTGATAAT 59.896 45.455 0.00 0.00 0.00 1.28
2998 5009 3.801293 GCCCCATTGCTGCTTTGATAATC 60.801 47.826 0.00 0.00 0.00 1.75
2999 5010 3.385433 CCCCATTGCTGCTTTGATAATCA 59.615 43.478 0.00 0.00 0.00 2.57
3000 5011 4.141892 CCCCATTGCTGCTTTGATAATCAA 60.142 41.667 0.00 0.00 34.03 2.57
3001 5012 5.421277 CCCATTGCTGCTTTGATAATCAAA 58.579 37.500 0.00 0.00 43.37 2.69
3011 5022 5.554822 TTTGATAATCAAAGCGGTGGTAC 57.445 39.130 0.00 0.00 41.02 3.34
3012 5023 3.191669 TGATAATCAAAGCGGTGGTACG 58.808 45.455 0.00 0.00 0.00 3.67
3013 5024 2.012937 TAATCAAAGCGGTGGTACGG 57.987 50.000 0.00 0.00 0.00 4.02
3014 5025 0.322322 AATCAAAGCGGTGGTACGGA 59.678 50.000 0.00 0.00 0.00 4.69
3015 5026 0.108329 ATCAAAGCGGTGGTACGGAG 60.108 55.000 0.00 0.00 0.00 4.63
3016 5027 2.047560 AAAGCGGTGGTACGGAGC 60.048 61.111 0.00 0.00 0.00 4.70
3017 5028 2.874664 AAAGCGGTGGTACGGAGCA 61.875 57.895 0.00 0.00 0.00 4.26
3018 5029 2.180159 AAAGCGGTGGTACGGAGCAT 62.180 55.000 1.23 0.00 35.06 3.79
3019 5030 2.125269 GCGGTGGTACGGAGCATT 60.125 61.111 1.23 0.00 35.06 3.56
3020 5031 2.461110 GCGGTGGTACGGAGCATTG 61.461 63.158 1.23 0.00 35.06 2.82
3021 5032 1.079405 CGGTGGTACGGAGCATTGT 60.079 57.895 1.23 0.00 35.06 2.71
3022 5033 0.672401 CGGTGGTACGGAGCATTGTT 60.672 55.000 1.23 0.00 35.06 2.83
3023 5034 1.530323 GGTGGTACGGAGCATTGTTT 58.470 50.000 1.23 0.00 35.06 2.83
3024 5035 1.883926 GGTGGTACGGAGCATTGTTTT 59.116 47.619 1.23 0.00 35.06 2.43
3025 5036 2.295070 GGTGGTACGGAGCATTGTTTTT 59.705 45.455 1.23 0.00 35.06 1.94
3026 5037 3.561503 GTGGTACGGAGCATTGTTTTTC 58.438 45.455 1.23 0.00 35.06 2.29
3027 5038 3.252458 GTGGTACGGAGCATTGTTTTTCT 59.748 43.478 1.23 0.00 35.06 2.52
3028 5039 3.886505 TGGTACGGAGCATTGTTTTTCTT 59.113 39.130 0.00 0.00 0.00 2.52
3029 5040 4.339814 TGGTACGGAGCATTGTTTTTCTTT 59.660 37.500 0.00 0.00 0.00 2.52
3030 5041 5.163499 TGGTACGGAGCATTGTTTTTCTTTT 60.163 36.000 0.00 0.00 0.00 2.27
3031 5042 5.174943 GGTACGGAGCATTGTTTTTCTTTTG 59.825 40.000 0.00 0.00 0.00 2.44
3032 5043 4.119136 ACGGAGCATTGTTTTTCTTTTGG 58.881 39.130 0.00 0.00 0.00 3.28
3033 5044 3.494251 CGGAGCATTGTTTTTCTTTTGGG 59.506 43.478 0.00 0.00 0.00 4.12
3034 5045 4.450976 GGAGCATTGTTTTTCTTTTGGGT 58.549 39.130 0.00 0.00 0.00 4.51
3035 5046 4.273235 GGAGCATTGTTTTTCTTTTGGGTG 59.727 41.667 0.00 0.00 0.00 4.61
3036 5047 5.096443 AGCATTGTTTTTCTTTTGGGTGA 57.904 34.783 0.00 0.00 0.00 4.02
3037 5048 5.495640 AGCATTGTTTTTCTTTTGGGTGAA 58.504 33.333 0.00 0.00 0.00 3.18
3038 5049 6.121590 AGCATTGTTTTTCTTTTGGGTGAAT 58.878 32.000 0.00 0.00 0.00 2.57
3039 5050 7.278875 AGCATTGTTTTTCTTTTGGGTGAATA 58.721 30.769 0.00 0.00 0.00 1.75
3040 5051 7.226523 AGCATTGTTTTTCTTTTGGGTGAATAC 59.773 33.333 0.00 0.00 0.00 1.89
3041 5052 7.011857 GCATTGTTTTTCTTTTGGGTGAATACA 59.988 33.333 0.00 0.00 0.00 2.29
3042 5053 8.550376 CATTGTTTTTCTTTTGGGTGAATACAG 58.450 33.333 0.00 0.00 0.00 2.74
3043 5054 7.411486 TGTTTTTCTTTTGGGTGAATACAGA 57.589 32.000 0.00 0.00 0.00 3.41
3044 5055 7.488322 TGTTTTTCTTTTGGGTGAATACAGAG 58.512 34.615 0.00 0.00 0.00 3.35
3045 5056 5.705609 TTTCTTTTGGGTGAATACAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
3046 5057 4.365514 TCTTTTGGGTGAATACAGAGCA 57.634 40.909 0.00 0.00 0.00 4.26
3047 5058 4.922206 TCTTTTGGGTGAATACAGAGCAT 58.078 39.130 0.00 0.00 0.00 3.79
3048 5059 5.324409 TCTTTTGGGTGAATACAGAGCATT 58.676 37.500 0.00 0.00 0.00 3.56
3049 5060 5.183713 TCTTTTGGGTGAATACAGAGCATTG 59.816 40.000 0.00 0.00 0.00 2.82
3050 5061 3.719268 TGGGTGAATACAGAGCATTGT 57.281 42.857 0.00 0.00 35.09 2.71
3051 5062 4.032960 TGGGTGAATACAGAGCATTGTT 57.967 40.909 0.00 0.00 32.56 2.83
3052 5063 3.758023 TGGGTGAATACAGAGCATTGTTG 59.242 43.478 0.00 0.00 32.56 3.33
3053 5064 4.009675 GGGTGAATACAGAGCATTGTTGA 58.990 43.478 0.00 0.00 32.56 3.18
3054 5065 4.458989 GGGTGAATACAGAGCATTGTTGAA 59.541 41.667 0.00 0.00 32.56 2.69
3055 5066 5.126061 GGGTGAATACAGAGCATTGTTGAAT 59.874 40.000 0.00 0.00 32.56 2.57
3056 5067 6.318648 GGGTGAATACAGAGCATTGTTGAATA 59.681 38.462 0.00 0.00 32.56 1.75
3057 5068 7.013655 GGGTGAATACAGAGCATTGTTGAATAT 59.986 37.037 0.00 0.00 32.56 1.28
3058 5069 8.408601 GGTGAATACAGAGCATTGTTGAATATT 58.591 33.333 0.00 0.00 32.56 1.28
3065 5076 9.890629 ACAGAGCATTGTTGAATATTAGAGTAA 57.109 29.630 0.00 0.00 0.00 2.24
3130 5141 8.557029 AGTATGATTATAAACTAGCAAAACGGC 58.443 33.333 0.00 0.00 0.00 5.68
3131 5142 6.126568 TGATTATAAACTAGCAAAACGGCC 57.873 37.500 0.00 0.00 0.00 6.13
3132 5143 4.968812 TTATAAACTAGCAAAACGGCCC 57.031 40.909 0.00 0.00 0.00 5.80
3133 5144 1.158434 TAAACTAGCAAAACGGCCCG 58.842 50.000 0.00 0.00 0.00 6.13
3134 5145 0.820482 AAACTAGCAAAACGGCCCGT 60.820 50.000 1.02 1.02 43.97 5.28
3135 5146 1.512156 AACTAGCAAAACGGCCCGTG 61.512 55.000 10.80 0.00 39.99 4.94
3136 5147 2.670251 TAGCAAAACGGCCCGTGG 60.670 61.111 10.80 3.70 39.99 4.94
3139 5150 3.220658 CAAAACGGCCCGTGGGTT 61.221 61.111 10.80 1.26 39.99 4.11
3140 5151 3.220658 AAAACGGCCCGTGGGTTG 61.221 61.111 10.80 1.90 39.99 3.77
3149 5160 3.353836 CGTGGGTTGCAACGGGAG 61.354 66.667 22.67 10.85 36.17 4.30
3150 5161 2.112297 GTGGGTTGCAACGGGAGA 59.888 61.111 22.67 2.28 0.00 3.71
3151 5162 1.527380 GTGGGTTGCAACGGGAGAA 60.527 57.895 22.67 2.29 0.00 2.87
3152 5163 1.104577 GTGGGTTGCAACGGGAGAAA 61.105 55.000 22.67 0.91 0.00 2.52
3153 5164 0.821711 TGGGTTGCAACGGGAGAAAG 60.822 55.000 22.67 0.00 0.00 2.62
3154 5165 0.536460 GGGTTGCAACGGGAGAAAGA 60.536 55.000 22.67 0.00 0.00 2.52
3155 5166 1.314730 GGTTGCAACGGGAGAAAGAA 58.685 50.000 22.67 0.00 0.00 2.52
3156 5167 1.679153 GGTTGCAACGGGAGAAAGAAA 59.321 47.619 22.67 0.00 0.00 2.52
3157 5168 2.296190 GGTTGCAACGGGAGAAAGAAAT 59.704 45.455 22.67 0.00 0.00 2.17
3158 5169 3.565516 GTTGCAACGGGAGAAAGAAATC 58.434 45.455 14.90 0.00 0.00 2.17
3159 5170 2.857483 TGCAACGGGAGAAAGAAATCA 58.143 42.857 0.00 0.00 0.00 2.57
3160 5171 3.420893 TGCAACGGGAGAAAGAAATCAT 58.579 40.909 0.00 0.00 0.00 2.45
3161 5172 4.584874 TGCAACGGGAGAAAGAAATCATA 58.415 39.130 0.00 0.00 0.00 2.15
3162 5173 5.007034 TGCAACGGGAGAAAGAAATCATAA 58.993 37.500 0.00 0.00 0.00 1.90
3163 5174 5.652014 TGCAACGGGAGAAAGAAATCATAAT 59.348 36.000 0.00 0.00 0.00 1.28
3164 5175 6.183360 TGCAACGGGAGAAAGAAATCATAATC 60.183 38.462 0.00 0.00 0.00 1.75
3165 5176 6.038714 GCAACGGGAGAAAGAAATCATAATCT 59.961 38.462 0.00 0.00 0.00 2.40
3166 5177 7.634522 CAACGGGAGAAAGAAATCATAATCTC 58.365 38.462 0.00 0.00 34.08 2.75
3171 5182 8.027440 GGAGAAAGAAATCATAATCTCCGATG 57.973 38.462 4.07 0.00 42.36 3.84
3172 5183 7.118971 GGAGAAAGAAATCATAATCTCCGATGG 59.881 40.741 4.07 0.00 42.36 3.51
3173 5184 6.429385 AGAAAGAAATCATAATCTCCGATGGC 59.571 38.462 0.00 0.00 0.00 4.40
3174 5185 4.583871 AGAAATCATAATCTCCGATGGCC 58.416 43.478 0.00 0.00 0.00 5.36
3175 5186 4.042062 AGAAATCATAATCTCCGATGGCCA 59.958 41.667 8.56 8.56 0.00 5.36
3176 5187 4.581309 AATCATAATCTCCGATGGCCAT 57.419 40.909 20.96 20.96 0.00 4.40
3177 5188 3.339253 TCATAATCTCCGATGGCCATG 57.661 47.619 26.56 15.28 0.00 3.66
3178 5189 2.905736 TCATAATCTCCGATGGCCATGA 59.094 45.455 26.56 14.92 0.00 3.07
3179 5190 2.839486 TAATCTCCGATGGCCATGAC 57.161 50.000 26.56 8.91 0.00 3.06
3180 5191 0.109342 AATCTCCGATGGCCATGACC 59.891 55.000 26.56 8.06 0.00 4.02
3181 5192 1.056125 ATCTCCGATGGCCATGACCA 61.056 55.000 26.56 2.13 45.82 4.02
3182 5193 1.524621 CTCCGATGGCCATGACCAC 60.525 63.158 26.56 7.19 44.17 4.16
3183 5194 2.256072 CTCCGATGGCCATGACCACA 62.256 60.000 26.56 0.00 44.17 4.17
3184 5195 1.152902 CCGATGGCCATGACCACAT 60.153 57.895 26.56 0.00 44.17 3.21
3185 5196 0.752743 CCGATGGCCATGACCACATT 60.753 55.000 26.56 0.00 44.17 2.71
3186 5197 1.105457 CGATGGCCATGACCACATTT 58.895 50.000 26.56 0.00 44.17 2.32
3187 5198 1.477700 CGATGGCCATGACCACATTTT 59.522 47.619 26.56 0.00 44.17 1.82
3188 5199 2.736081 CGATGGCCATGACCACATTTTG 60.736 50.000 26.56 0.00 44.17 2.44
3189 5200 0.321021 TGGCCATGACCACATTTTGC 59.679 50.000 0.00 0.00 33.75 3.68
3190 5201 0.609662 GGCCATGACCACATTTTGCT 59.390 50.000 0.00 0.00 34.15 3.91
3191 5202 1.673626 GGCCATGACCACATTTTGCTG 60.674 52.381 0.00 0.00 34.15 4.41
3192 5203 1.717194 CCATGACCACATTTTGCTGC 58.283 50.000 0.00 0.00 34.15 5.25
3193 5204 1.001068 CCATGACCACATTTTGCTGCA 59.999 47.619 0.00 0.00 34.15 4.41
3194 5205 2.354303 CCATGACCACATTTTGCTGCAT 60.354 45.455 1.84 0.00 34.15 3.96
3195 5206 2.728690 TGACCACATTTTGCTGCATC 57.271 45.000 1.84 0.00 0.00 3.91
3196 5207 1.962100 TGACCACATTTTGCTGCATCA 59.038 42.857 1.84 0.00 0.00 3.07
3197 5208 2.288334 TGACCACATTTTGCTGCATCAC 60.288 45.455 1.84 0.00 0.00 3.06
3198 5209 1.001181 ACCACATTTTGCTGCATCACC 59.999 47.619 1.84 0.00 0.00 4.02
3199 5210 1.342555 CACATTTTGCTGCATCACCG 58.657 50.000 1.84 0.00 0.00 4.94
3200 5211 1.068402 CACATTTTGCTGCATCACCGA 60.068 47.619 1.84 0.00 0.00 4.69
3201 5212 1.200716 ACATTTTGCTGCATCACCGAG 59.799 47.619 1.84 0.00 0.00 4.63
3202 5213 1.469703 CATTTTGCTGCATCACCGAGA 59.530 47.619 1.84 0.00 0.00 4.04
3203 5214 1.825090 TTTTGCTGCATCACCGAGAT 58.175 45.000 1.84 0.00 37.48 2.75
3204 5215 2.689553 TTTGCTGCATCACCGAGATA 57.310 45.000 1.84 0.00 34.43 1.98
3205 5216 1.939974 TTGCTGCATCACCGAGATAC 58.060 50.000 1.84 0.00 34.43 2.24
3206 5217 0.823460 TGCTGCATCACCGAGATACA 59.177 50.000 0.00 0.00 34.43 2.29
3207 5218 1.413812 TGCTGCATCACCGAGATACAT 59.586 47.619 0.00 0.00 34.43 2.29
3208 5219 2.158914 TGCTGCATCACCGAGATACATT 60.159 45.455 0.00 0.00 34.43 2.71
3209 5220 3.069443 TGCTGCATCACCGAGATACATTA 59.931 43.478 0.00 0.00 34.43 1.90
3210 5221 4.248859 GCTGCATCACCGAGATACATTAT 58.751 43.478 0.00 0.00 34.43 1.28
3211 5222 4.328440 GCTGCATCACCGAGATACATTATC 59.672 45.833 0.00 0.00 34.43 1.75
3212 5223 5.467035 TGCATCACCGAGATACATTATCA 57.533 39.130 0.00 0.00 37.65 2.15
3213 5224 5.230182 TGCATCACCGAGATACATTATCAC 58.770 41.667 0.00 0.00 37.65 3.06
3214 5225 5.011023 TGCATCACCGAGATACATTATCACT 59.989 40.000 0.00 0.00 37.65 3.41
3215 5226 5.574830 GCATCACCGAGATACATTATCACTC 59.425 44.000 0.00 0.00 37.65 3.51
3216 5227 6.571344 GCATCACCGAGATACATTATCACTCT 60.571 42.308 0.00 0.00 37.65 3.24
3217 5228 6.561737 TCACCGAGATACATTATCACTCTC 57.438 41.667 0.00 0.00 37.65 3.20
3218 5229 6.062095 TCACCGAGATACATTATCACTCTCA 58.938 40.000 0.00 0.00 37.65 3.27
3219 5230 6.717084 TCACCGAGATACATTATCACTCTCAT 59.283 38.462 0.00 0.00 37.65 2.90
3220 5231 7.231519 TCACCGAGATACATTATCACTCTCATT 59.768 37.037 0.00 0.00 37.65 2.57
3221 5232 7.869937 CACCGAGATACATTATCACTCTCATTT 59.130 37.037 0.00 0.00 37.65 2.32
3222 5233 8.424918 ACCGAGATACATTATCACTCTCATTTT 58.575 33.333 0.00 0.00 37.65 1.82
3223 5234 8.920665 CCGAGATACATTATCACTCTCATTTTC 58.079 37.037 0.00 0.00 37.65 2.29
3224 5235 8.634265 CGAGATACATTATCACTCTCATTTTCG 58.366 37.037 0.00 0.00 37.65 3.46
3225 5236 9.469807 GAGATACATTATCACTCTCATTTTCGT 57.530 33.333 0.00 0.00 37.65 3.85
3226 5237 9.254133 AGATACATTATCACTCTCATTTTCGTG 57.746 33.333 0.00 0.00 37.65 4.35
3227 5238 9.249457 GATACATTATCACTCTCATTTTCGTGA 57.751 33.333 0.00 0.00 40.27 4.35
3228 5239 7.905604 ACATTATCACTCTCATTTTCGTGAA 57.094 32.000 0.00 0.00 39.52 3.18
3229 5240 8.322906 ACATTATCACTCTCATTTTCGTGAAA 57.677 30.769 0.00 0.00 39.52 2.69
3230 5241 8.950210 ACATTATCACTCTCATTTTCGTGAAAT 58.050 29.630 0.00 0.00 39.52 2.17
3231 5242 9.430838 CATTATCACTCTCATTTTCGTGAAATC 57.569 33.333 0.00 0.00 39.52 2.17
3232 5243 8.546597 TTATCACTCTCATTTTCGTGAAATCA 57.453 30.769 0.00 0.00 39.52 2.57
3233 5244 7.621428 ATCACTCTCATTTTCGTGAAATCAT 57.379 32.000 0.00 0.00 39.52 2.45
3234 5245 6.834876 TCACTCTCATTTTCGTGAAATCATG 58.165 36.000 0.00 0.00 35.79 3.07
3235 5246 6.650390 TCACTCTCATTTTCGTGAAATCATGA 59.350 34.615 0.00 0.00 39.88 3.07
3236 5247 7.173047 TCACTCTCATTTTCGTGAAATCATGAA 59.827 33.333 12.78 12.78 46.63 2.57
3246 5257 8.640091 TTCGTGAAATCATGAACAATTTTTCA 57.360 26.923 13.36 13.36 44.33 2.69
3247 5258 8.640091 TCGTGAAATCATGAACAATTTTTCAA 57.360 26.923 17.22 5.06 38.95 2.69
3248 5259 9.091784 TCGTGAAATCATGAACAATTTTTCAAA 57.908 25.926 17.22 9.21 38.95 2.69
3249 5260 9.699985 CGTGAAATCATGAACAATTTTTCAAAA 57.300 25.926 17.22 3.35 38.95 2.44
3289 5300 9.657419 AAACTTGTGAACATTCTTTCAGATTTT 57.343 25.926 0.00 0.00 36.15 1.82
3290 5301 8.862550 ACTTGTGAACATTCTTTCAGATTTTC 57.137 30.769 0.00 0.00 36.15 2.29
3291 5302 8.469200 ACTTGTGAACATTCTTTCAGATTTTCA 58.531 29.630 0.00 0.00 36.15 2.69
3292 5303 9.304731 CTTGTGAACATTCTTTCAGATTTTCAA 57.695 29.630 0.00 0.00 36.15 2.69
3293 5304 9.650539 TTGTGAACATTCTTTCAGATTTTCAAA 57.349 25.926 0.00 0.00 36.15 2.69
3294 5305 9.086336 TGTGAACATTCTTTCAGATTTTCAAAC 57.914 29.630 0.00 0.00 36.15 2.93
3295 5306 9.086336 GTGAACATTCTTTCAGATTTTCAAACA 57.914 29.630 0.00 0.00 36.15 2.83
3296 5307 9.820725 TGAACATTCTTTCAGATTTTCAAACAT 57.179 25.926 0.00 0.00 31.68 2.71
3409 5420 8.506168 AAATAGGCAAACATTTCTAGAATCGA 57.494 30.769 5.89 0.00 0.00 3.59
3410 5421 5.803020 AGGCAAACATTTCTAGAATCGAC 57.197 39.130 5.89 0.00 0.00 4.20
3411 5422 4.330074 AGGCAAACATTTCTAGAATCGACG 59.670 41.667 5.89 0.00 0.00 5.12
3412 5423 4.092968 GGCAAACATTTCTAGAATCGACGT 59.907 41.667 5.89 0.00 0.00 4.34
3413 5424 5.290158 GGCAAACATTTCTAGAATCGACGTA 59.710 40.000 5.89 0.00 0.00 3.57
3414 5425 6.176453 GCAAACATTTCTAGAATCGACGTAC 58.824 40.000 5.89 0.00 0.00 3.67
3415 5426 6.183360 GCAAACATTTCTAGAATCGACGTACA 60.183 38.462 5.89 0.00 0.00 2.90
3416 5427 7.464178 GCAAACATTTCTAGAATCGACGTACAT 60.464 37.037 5.89 0.00 0.00 2.29
3417 5428 8.380644 CAAACATTTCTAGAATCGACGTACATT 58.619 33.333 5.89 0.00 0.00 2.71
3418 5429 8.475331 AACATTTCTAGAATCGACGTACATTT 57.525 30.769 5.89 0.00 0.00 2.32
3419 5430 8.475331 ACATTTCTAGAATCGACGTACATTTT 57.525 30.769 5.89 0.00 0.00 1.82
3420 5431 8.932791 ACATTTCTAGAATCGACGTACATTTTT 58.067 29.630 5.89 0.00 0.00 1.94
3443 5454 8.499403 TTTTTGGAAATCGGTGAAAGAATTTT 57.501 26.923 0.00 0.00 39.27 1.82
3444 5455 8.499403 TTTTGGAAATCGGTGAAAGAATTTTT 57.501 26.923 0.00 0.00 39.27 1.94
3445 5456 7.475771 TTGGAAATCGGTGAAAGAATTTTTG 57.524 32.000 0.00 0.00 39.27 2.44
3446 5457 6.810911 TGGAAATCGGTGAAAGAATTTTTGA 58.189 32.000 0.00 0.00 39.27 2.69
3447 5458 7.268586 TGGAAATCGGTGAAAGAATTTTTGAA 58.731 30.769 0.00 0.00 39.27 2.69
3448 5459 7.766278 TGGAAATCGGTGAAAGAATTTTTGAAA 59.234 29.630 0.00 0.00 39.27 2.69
3449 5460 8.773645 GGAAATCGGTGAAAGAATTTTTGAAAT 58.226 29.630 0.00 0.00 39.27 2.17
3452 5463 8.885494 ATCGGTGAAAGAATTTTTGAAATTCA 57.115 26.923 21.46 0.00 39.27 2.57
3453 5464 8.885494 TCGGTGAAAGAATTTTTGAAATTCAT 57.115 26.923 21.46 11.61 39.27 2.57
3454 5465 8.763356 TCGGTGAAAGAATTTTTGAAATTCATG 58.237 29.630 21.46 0.00 39.27 3.07
3455 5466 8.763356 CGGTGAAAGAATTTTTGAAATTCATGA 58.237 29.630 21.46 0.00 39.27 3.07
3513 5524 9.611284 TGCATGATATATTTTGAATTAGCGAAC 57.389 29.630 0.00 0.00 0.00 3.95
3514 5525 9.611284 GCATGATATATTTTGAATTAGCGAACA 57.389 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.537874 CCGGTCTAAGCCTCGGGG 61.538 72.222 0.00 0.00 38.93 5.73
8 9 4.222847 GCCGGTCTAAGCCTCGGG 62.223 72.222 1.90 0.00 42.43 5.14
9 10 4.570663 CGCCGGTCTAAGCCTCGG 62.571 72.222 1.90 0.00 44.70 4.63
10 11 4.570663 CCGCCGGTCTAAGCCTCG 62.571 72.222 1.90 0.00 0.00 4.63
11 12 4.893601 GCCGCCGGTCTAAGCCTC 62.894 72.222 4.45 0.00 0.00 4.70
15 16 4.867599 GGACGCCGCCGGTCTAAG 62.868 72.222 4.45 0.00 39.22 2.18
42 43 4.798682 TCCTTCCCTCCCTCCGCC 62.799 72.222 0.00 0.00 0.00 6.13
43 44 3.157949 CTCCTTCCCTCCCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
44 45 2.444895 CCTCCTTCCCTCCCTCCG 60.445 72.222 0.00 0.00 0.00 4.63
45 46 2.040359 CCCTCCTTCCCTCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
46 47 1.074850 CTCCCTCCTTCCCTCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
47 48 1.550374 TCTCCCTCCTTCCCTCCCT 60.550 63.158 0.00 0.00 0.00 4.20
48 49 1.074850 CTCTCCCTCCTTCCCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
49 50 1.764454 GCTCTCCCTCCTTCCCTCC 60.764 68.421 0.00 0.00 0.00 4.30
50 51 2.131067 CGCTCTCCCTCCTTCCCTC 61.131 68.421 0.00 0.00 0.00 4.30
51 52 2.042435 CGCTCTCCCTCCTTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
52 53 3.855853 GCGCTCTCCCTCCTTCCC 61.856 72.222 0.00 0.00 0.00 3.97
53 54 4.214327 CGCGCTCTCCCTCCTTCC 62.214 72.222 5.56 0.00 0.00 3.46
54 55 3.141488 TCGCGCTCTCCCTCCTTC 61.141 66.667 5.56 0.00 0.00 3.46
55 56 3.453679 GTCGCGCTCTCCCTCCTT 61.454 66.667 5.56 0.00 0.00 3.36
61 62 1.587933 CTATAGGGGTCGCGCTCTCC 61.588 65.000 5.56 8.16 0.00 3.71
62 63 1.877367 CTATAGGGGTCGCGCTCTC 59.123 63.158 5.56 0.00 0.00 3.20
63 64 2.269529 GCTATAGGGGTCGCGCTCT 61.270 63.158 5.56 0.00 0.00 4.09
64 65 2.258897 GCTATAGGGGTCGCGCTC 59.741 66.667 5.56 0.00 0.00 5.03
65 66 2.203509 AGCTATAGGGGTCGCGCT 60.204 61.111 5.56 0.00 0.00 5.92
66 67 2.049063 CAGCTATAGGGGTCGCGC 60.049 66.667 0.00 0.00 0.00 6.86
67 68 2.651361 CCAGCTATAGGGGTCGCG 59.349 66.667 0.00 0.00 0.00 5.87
68 69 3.060866 CCCAGCTATAGGGGTCGC 58.939 66.667 1.04 0.00 42.90 5.19
74 75 1.351350 GGCCCTAAACCCAGCTATAGG 59.649 57.143 1.04 0.00 35.68 2.57
75 76 2.861147 GGCCCTAAACCCAGCTATAG 57.139 55.000 0.00 0.00 0.00 1.31
136 137 4.050553 GCTGAATGAACTAGCTAGCAGAG 58.949 47.826 20.91 15.77 34.70 3.35
137 138 3.181471 GGCTGAATGAACTAGCTAGCAGA 60.181 47.826 20.91 4.69 37.58 4.26
138 139 3.129871 GGCTGAATGAACTAGCTAGCAG 58.870 50.000 20.91 17.72 37.58 4.24
139 140 2.158900 GGGCTGAATGAACTAGCTAGCA 60.159 50.000 20.91 11.81 37.58 3.49
140 141 2.488952 GGGCTGAATGAACTAGCTAGC 58.511 52.381 20.91 6.62 37.58 3.42
141 142 2.546795 CGGGGCTGAATGAACTAGCTAG 60.547 54.545 19.44 19.44 37.58 3.42
142 143 1.412710 CGGGGCTGAATGAACTAGCTA 59.587 52.381 0.00 0.00 37.58 3.32
143 144 0.179000 CGGGGCTGAATGAACTAGCT 59.821 55.000 0.00 0.00 37.58 3.32
144 145 0.815615 CCGGGGCTGAATGAACTAGC 60.816 60.000 0.00 0.00 36.74 3.42
145 146 0.830648 TCCGGGGCTGAATGAACTAG 59.169 55.000 0.00 0.00 0.00 2.57
146 147 1.281419 TTCCGGGGCTGAATGAACTA 58.719 50.000 0.00 0.00 0.00 2.24
147 148 0.404040 TTTCCGGGGCTGAATGAACT 59.596 50.000 0.00 0.00 0.00 3.01
148 149 1.253100 TTTTCCGGGGCTGAATGAAC 58.747 50.000 0.00 0.00 0.00 3.18
149 150 2.230130 ATTTTCCGGGGCTGAATGAA 57.770 45.000 0.00 0.00 0.00 2.57
150 151 2.241176 AGTATTTTCCGGGGCTGAATGA 59.759 45.455 0.00 0.00 0.00 2.57
151 152 2.654863 AGTATTTTCCGGGGCTGAATG 58.345 47.619 0.00 0.00 0.00 2.67
152 153 4.513406 TTAGTATTTTCCGGGGCTGAAT 57.487 40.909 0.00 0.00 0.00 2.57
153 154 4.204012 CATTAGTATTTTCCGGGGCTGAA 58.796 43.478 0.00 0.00 0.00 3.02
154 155 3.201266 ACATTAGTATTTTCCGGGGCTGA 59.799 43.478 0.00 0.00 0.00 4.26
155 156 3.551846 ACATTAGTATTTTCCGGGGCTG 58.448 45.455 0.00 0.00 0.00 4.85
156 157 3.945640 ACATTAGTATTTTCCGGGGCT 57.054 42.857 0.00 0.00 0.00 5.19
157 158 4.070009 CCTACATTAGTATTTTCCGGGGC 58.930 47.826 0.00 0.00 0.00 5.80
158 159 4.506095 CCCCTACATTAGTATTTTCCGGGG 60.506 50.000 0.00 0.00 40.18 5.73
159 160 4.103627 ACCCCTACATTAGTATTTTCCGGG 59.896 45.833 0.00 0.00 31.35 5.73
160 161 5.300411 ACCCCTACATTAGTATTTTCCGG 57.700 43.478 0.00 0.00 0.00 5.14
161 162 8.735692 TTTTACCCCTACATTAGTATTTTCCG 57.264 34.615 0.00 0.00 0.00 4.30
191 192 9.378551 TCATATTACTTGTTTACTCCATGTGAC 57.621 33.333 0.00 0.00 0.00 3.67
197 198 9.967451 TCCAATTCATATTACTTGTTTACTCCA 57.033 29.630 0.00 0.00 0.00 3.86
269 270 2.423538 CTCACTTTTCCCCCTAAATGCG 59.576 50.000 0.00 0.00 0.00 4.73
273 275 8.050930 GTGTATATTCTCACTTTTCCCCCTAAA 58.949 37.037 0.00 0.00 0.00 1.85
334 336 3.568007 TGAAAAACCAGGTATGCTCACAC 59.432 43.478 0.00 0.00 0.00 3.82
349 351 8.761497 GGGAATTAGCAAAACTTACTGAAAAAC 58.239 33.333 0.00 0.00 0.00 2.43
415 519 5.770162 ACCAGCTGCTCACTAAATTAAAGTT 59.230 36.000 8.66 0.00 0.00 2.66
420 524 4.455533 CACAACCAGCTGCTCACTAAATTA 59.544 41.667 8.66 0.00 0.00 1.40
421 525 3.254166 CACAACCAGCTGCTCACTAAATT 59.746 43.478 8.66 0.00 0.00 1.82
431 535 2.492773 AACCTGCACAACCAGCTGC 61.493 57.895 8.66 0.00 0.00 5.25
473 577 7.566760 TGCCTCGATCAATTATAAAATGTGT 57.433 32.000 0.00 0.00 0.00 3.72
577 1062 1.597742 GCCGTAGACCATGCATGAAT 58.402 50.000 28.31 15.42 0.00 2.57
593 1082 2.568090 GCACCATCAGTTTGGCCG 59.432 61.111 0.00 0.00 40.68 6.13
686 1183 0.962489 CGGGTTCCAGCTATCGATCT 59.038 55.000 0.00 0.00 0.00 2.75
908 1405 4.679662 CCATGAAAATTGATGAGGTCTGC 58.320 43.478 0.00 0.00 0.00 4.26
999 1502 1.694696 GTGAAGTGGAGAGGTGGAGTT 59.305 52.381 0.00 0.00 0.00 3.01
1016 1519 1.123861 AGCTGCTTCAGTGGGAGTGA 61.124 55.000 0.00 0.00 33.43 3.41
1039 1557 4.314440 TTCCGCCGCTGCTTCAGT 62.314 61.111 0.00 0.00 33.43 3.41
1040 1558 3.494336 CTTCCGCCGCTGCTTCAG 61.494 66.667 0.00 0.00 34.43 3.02
1041 1559 3.529341 TTCTTCCGCCGCTGCTTCA 62.529 57.895 0.00 0.00 34.43 3.02
1042 1560 2.742372 TTCTTCCGCCGCTGCTTC 60.742 61.111 0.00 0.00 34.43 3.86
1043 1561 2.731691 TTCTTCTTCCGCCGCTGCTT 62.732 55.000 0.00 0.00 34.43 3.91
1044 1562 3.240134 TTCTTCTTCCGCCGCTGCT 62.240 57.895 0.00 0.00 34.43 4.24
1045 1563 2.742372 TTCTTCTTCCGCCGCTGC 60.742 61.111 0.00 0.00 0.00 5.25
1046 1564 0.670546 TTCTTCTTCTTCCGCCGCTG 60.671 55.000 0.00 0.00 0.00 5.18
1047 1565 0.390472 CTTCTTCTTCTTCCGCCGCT 60.390 55.000 0.00 0.00 0.00 5.52
1048 1566 0.389948 TCTTCTTCTTCTTCCGCCGC 60.390 55.000 0.00 0.00 0.00 6.53
1049 1567 1.996191 CTTCTTCTTCTTCTTCCGCCG 59.004 52.381 0.00 0.00 0.00 6.46
1050 1568 1.735018 GCTTCTTCTTCTTCTTCCGCC 59.265 52.381 0.00 0.00 0.00 6.13
1051 1569 2.694213 AGCTTCTTCTTCTTCTTCCGC 58.306 47.619 0.00 0.00 0.00 5.54
1052 1570 5.317733 TCTAGCTTCTTCTTCTTCTTCCG 57.682 43.478 0.00 0.00 0.00 4.30
1053 1571 5.420739 TCCTCTAGCTTCTTCTTCTTCTTCC 59.579 44.000 0.00 0.00 0.00 3.46
1054 1572 6.071616 TGTCCTCTAGCTTCTTCTTCTTCTTC 60.072 42.308 0.00 0.00 0.00 2.87
1055 1573 5.777732 TGTCCTCTAGCTTCTTCTTCTTCTT 59.222 40.000 0.00 0.00 0.00 2.52
1056 1574 5.329399 TGTCCTCTAGCTTCTTCTTCTTCT 58.671 41.667 0.00 0.00 0.00 2.85
1467 2182 2.029964 GACGGGTCAGGCAACGAA 59.970 61.111 0.00 0.00 46.39 3.85
1820 2544 1.945387 TGTTACGTGCCGGTGTAAAA 58.055 45.000 14.75 9.11 32.77 1.52
1853 2585 2.555325 TGACTTGACTCGTGGTATTCGT 59.445 45.455 0.00 0.00 0.00 3.85
1886 2618 4.704833 AATGCAGCGTCACGGGCT 62.705 61.111 0.00 0.00 42.61 5.19
2123 2862 3.384532 GTGTAGGCGAACCCCGGA 61.385 66.667 0.73 0.00 39.04 5.14
2216 2958 1.864711 TCGTTGGCTTTCTTGAACGAG 59.135 47.619 0.00 0.00 43.74 4.18
2217 2959 1.864711 CTCGTTGGCTTTCTTGAACGA 59.135 47.619 0.00 0.00 45.72 3.85
2228 2970 2.203938 TTCCTCCCCTCGTTGGCT 60.204 61.111 0.00 0.00 0.00 4.75
2270 3012 1.069978 CAGCTAGCTAAAGCCCTCTCC 59.930 57.143 18.86 0.00 43.86 3.71
2351 3099 4.052159 ACCAAATCAAAACGCACATCAA 57.948 36.364 0.00 0.00 0.00 2.57
2352 3100 3.724508 ACCAAATCAAAACGCACATCA 57.275 38.095 0.00 0.00 0.00 3.07
2353 3101 3.801594 ACAACCAAATCAAAACGCACATC 59.198 39.130 0.00 0.00 0.00 3.06
2354 3102 3.791245 ACAACCAAATCAAAACGCACAT 58.209 36.364 0.00 0.00 0.00 3.21
2355 3103 3.238108 ACAACCAAATCAAAACGCACA 57.762 38.095 0.00 0.00 0.00 4.57
2356 3104 4.573802 GAAACAACCAAATCAAAACGCAC 58.426 39.130 0.00 0.00 0.00 5.34
2357 3105 3.304559 CGAAACAACCAAATCAAAACGCA 59.695 39.130 0.00 0.00 0.00 5.24
2358 3106 3.304826 ACGAAACAACCAAATCAAAACGC 59.695 39.130 0.00 0.00 0.00 4.84
2359 3107 5.443142 AACGAAACAACCAAATCAAAACG 57.557 34.783 0.00 0.00 0.00 3.60
2360 3108 6.822506 TCAAACGAAACAACCAAATCAAAAC 58.177 32.000 0.00 0.00 0.00 2.43
2361 3109 6.647067 ACTCAAACGAAACAACCAAATCAAAA 59.353 30.769 0.00 0.00 0.00 2.44
2362 3110 6.159988 ACTCAAACGAAACAACCAAATCAAA 58.840 32.000 0.00 0.00 0.00 2.69
2363 3111 5.715070 ACTCAAACGAAACAACCAAATCAA 58.285 33.333 0.00 0.00 0.00 2.57
2364 3112 5.317733 ACTCAAACGAAACAACCAAATCA 57.682 34.783 0.00 0.00 0.00 2.57
2388 3136 3.367607 CAACGTACACAACCAAACCATG 58.632 45.455 0.00 0.00 0.00 3.66
2445 3193 8.771920 ACTTAATCGAGATTCATTACAACACA 57.228 30.769 1.11 0.00 32.50 3.72
2516 3266 2.172717 GCCCCAAGCTAGGAATAGTTCA 59.827 50.000 4.25 0.00 38.99 3.18
2532 3282 2.525592 CAAGGAAACCAGGCCCCA 59.474 61.111 0.00 0.00 0.00 4.96
2581 3336 1.073763 AGGGCCGCTAATGAATATGCA 59.926 47.619 0.00 0.00 0.00 3.96
2599 3354 9.539825 GGACATATCATCATTATAGTAGCAAGG 57.460 37.037 0.00 0.00 0.00 3.61
2603 3358 8.147058 CCCTGGACATATCATCATTATAGTAGC 58.853 40.741 0.00 0.00 0.00 3.58
2630 4641 0.398098 TAGCCTGTAGCCCTGTACCC 60.398 60.000 0.00 0.00 45.47 3.69
2631 4642 1.718280 ATAGCCTGTAGCCCTGTACC 58.282 55.000 0.00 0.00 45.47 3.34
2633 4644 2.832129 GCATATAGCCTGTAGCCCTGTA 59.168 50.000 0.00 0.00 45.47 2.74
2634 4645 1.625818 GCATATAGCCTGTAGCCCTGT 59.374 52.381 0.00 0.00 45.47 4.00
2645 4656 5.458041 AAATTCACCATGTGCATATAGCC 57.542 39.130 0.00 0.00 44.83 3.93
2673 4684 3.959293 TGTAAGTGGGTAGACAGATCGA 58.041 45.455 0.00 0.00 0.00 3.59
2679 4690 5.697067 ACCAAAATTGTAAGTGGGTAGACA 58.303 37.500 0.00 0.00 35.32 3.41
2693 4704 4.930963 TCTGCACACAGTTACCAAAATTG 58.069 39.130 0.00 0.00 44.77 2.32
2715 4726 3.136763 CTGCATCTTTGTGTCACACTCT 58.863 45.455 9.90 0.00 35.11 3.24
2717 4728 1.605710 GCTGCATCTTTGTGTCACACT 59.394 47.619 9.90 0.00 35.11 3.55
2723 4734 1.265095 CAACGAGCTGCATCTTTGTGT 59.735 47.619 1.02 0.00 0.00 3.72
2724 4735 1.959747 CAACGAGCTGCATCTTTGTG 58.040 50.000 1.02 0.00 0.00 3.33
2725 4736 0.239347 GCAACGAGCTGCATCTTTGT 59.761 50.000 1.02 0.66 42.17 2.83
2726 4737 3.011513 GCAACGAGCTGCATCTTTG 57.988 52.632 1.02 7.96 42.17 2.77
2733 4744 2.330231 TTTTACATGCAACGAGCTGC 57.670 45.000 0.00 0.00 45.94 5.25
2734 4745 3.626977 TGTTTTTACATGCAACGAGCTG 58.373 40.909 0.00 0.00 45.94 4.24
2735 4746 3.980646 TGTTTTTACATGCAACGAGCT 57.019 38.095 0.00 0.00 45.94 4.09
2736 4747 4.201391 CGATTGTTTTTACATGCAACGAGC 60.201 41.667 0.00 0.00 45.96 5.03
2737 4748 5.058008 GTCGATTGTTTTTACATGCAACGAG 59.942 40.000 0.00 0.00 31.16 4.18
2738 4749 4.907010 GTCGATTGTTTTTACATGCAACGA 59.093 37.500 0.00 0.00 0.00 3.85
2739 4750 4.909305 AGTCGATTGTTTTTACATGCAACG 59.091 37.500 0.00 0.00 0.00 4.10
2740 4751 6.853872 TGTAGTCGATTGTTTTTACATGCAAC 59.146 34.615 0.00 0.00 0.00 4.17
2741 4752 6.853872 GTGTAGTCGATTGTTTTTACATGCAA 59.146 34.615 0.00 0.00 0.00 4.08
2742 4753 6.017852 TGTGTAGTCGATTGTTTTTACATGCA 60.018 34.615 0.00 0.00 0.00 3.96
2743 4754 6.367421 TGTGTAGTCGATTGTTTTTACATGC 58.633 36.000 0.00 0.00 0.00 4.06
2744 4755 8.227119 TGATGTGTAGTCGATTGTTTTTACATG 58.773 33.333 0.00 0.00 0.00 3.21
2745 4756 8.317891 TGATGTGTAGTCGATTGTTTTTACAT 57.682 30.769 0.00 0.00 0.00 2.29
2746 4757 7.716768 TGATGTGTAGTCGATTGTTTTTACA 57.283 32.000 0.00 0.00 0.00 2.41
2747 4758 8.227791 ACATGATGTGTAGTCGATTGTTTTTAC 58.772 33.333 0.00 0.00 39.91 2.01
2748 4759 8.317891 ACATGATGTGTAGTCGATTGTTTTTA 57.682 30.769 0.00 0.00 39.91 1.52
2749 4760 7.202016 ACATGATGTGTAGTCGATTGTTTTT 57.798 32.000 0.00 0.00 39.91 1.94
2750 4761 6.801539 ACATGATGTGTAGTCGATTGTTTT 57.198 33.333 0.00 0.00 39.91 2.43
2751 4762 6.650807 AGAACATGATGTGTAGTCGATTGTTT 59.349 34.615 0.00 0.00 41.14 2.83
2809 4820 6.577427 GCTTCTGTAAGGTTTTCGTTTATGTG 59.423 38.462 0.00 0.00 32.98 3.21
2839 4850 4.410099 TCATTTCACTTTGATGAAGCCCT 58.590 39.130 0.00 0.00 39.68 5.19
2867 4878 3.378742 TCGTTGTCCTAAAAGCTGCAAAA 59.621 39.130 1.02 0.00 0.00 2.44
2868 4879 2.946329 TCGTTGTCCTAAAAGCTGCAAA 59.054 40.909 1.02 0.00 0.00 3.68
2884 4895 1.019278 CCCCGGAGAACATGTCGTTG 61.019 60.000 0.73 0.00 38.19 4.10
2899 4910 1.827969 AGATCTCAACAGAGTTCCCCG 59.172 52.381 0.00 0.00 31.42 5.73
2914 4925 1.137872 GTTCCTCGATGGTGCAGATCT 59.862 52.381 0.00 0.00 37.07 2.75
2947 4958 4.794334 TGTGCCCCTACTTCTGTTAAAAA 58.206 39.130 0.00 0.00 0.00 1.94
2956 4967 0.250727 TGTGCTTGTGCCCCTACTTC 60.251 55.000 0.00 0.00 38.71 3.01
2976 4987 1.113788 TATCAAAGCAGCAATGGGGC 58.886 50.000 0.00 0.00 0.00 5.80
2977 4988 3.385433 TGATTATCAAAGCAGCAATGGGG 59.615 43.478 0.00 0.00 0.00 4.96
2978 4989 4.659111 TGATTATCAAAGCAGCAATGGG 57.341 40.909 0.00 0.00 0.00 4.00
2989 5000 4.093703 CGTACCACCGCTTTGATTATCAAA 59.906 41.667 17.92 17.92 43.37 2.69
2990 5001 3.619483 CGTACCACCGCTTTGATTATCAA 59.381 43.478 3.20 3.20 34.03 2.57
2991 5002 3.191669 CGTACCACCGCTTTGATTATCA 58.808 45.455 0.00 0.00 0.00 2.15
2992 5003 2.542595 CCGTACCACCGCTTTGATTATC 59.457 50.000 0.00 0.00 0.00 1.75
2993 5004 2.168936 TCCGTACCACCGCTTTGATTAT 59.831 45.455 0.00 0.00 0.00 1.28
2994 5005 1.549620 TCCGTACCACCGCTTTGATTA 59.450 47.619 0.00 0.00 0.00 1.75
2995 5006 0.322322 TCCGTACCACCGCTTTGATT 59.678 50.000 0.00 0.00 0.00 2.57
2996 5007 0.108329 CTCCGTACCACCGCTTTGAT 60.108 55.000 0.00 0.00 0.00 2.57
2997 5008 1.290955 CTCCGTACCACCGCTTTGA 59.709 57.895 0.00 0.00 0.00 2.69
2998 5009 2.388232 GCTCCGTACCACCGCTTTG 61.388 63.158 0.00 0.00 0.00 2.77
2999 5010 2.047560 GCTCCGTACCACCGCTTT 60.048 61.111 0.00 0.00 0.00 3.51
3000 5011 2.180159 AATGCTCCGTACCACCGCTT 62.180 55.000 0.00 0.00 0.00 4.68
3001 5012 2.656069 AATGCTCCGTACCACCGCT 61.656 57.895 0.00 0.00 0.00 5.52
3002 5013 2.125269 AATGCTCCGTACCACCGC 60.125 61.111 0.00 0.00 0.00 5.68
3003 5014 0.672401 AACAATGCTCCGTACCACCG 60.672 55.000 0.00 0.00 0.00 4.94
3004 5015 1.530323 AAACAATGCTCCGTACCACC 58.470 50.000 0.00 0.00 0.00 4.61
3005 5016 3.252458 AGAAAAACAATGCTCCGTACCAC 59.748 43.478 0.00 0.00 0.00 4.16
3006 5017 3.482436 AGAAAAACAATGCTCCGTACCA 58.518 40.909 0.00 0.00 0.00 3.25
3007 5018 4.499037 AAGAAAAACAATGCTCCGTACC 57.501 40.909 0.00 0.00 0.00 3.34
3008 5019 5.174943 CCAAAAGAAAAACAATGCTCCGTAC 59.825 40.000 0.00 0.00 0.00 3.67
3009 5020 5.285651 CCAAAAGAAAAACAATGCTCCGTA 58.714 37.500 0.00 0.00 0.00 4.02
3010 5021 4.119136 CCAAAAGAAAAACAATGCTCCGT 58.881 39.130 0.00 0.00 0.00 4.69
3011 5022 3.494251 CCCAAAAGAAAAACAATGCTCCG 59.506 43.478 0.00 0.00 0.00 4.63
3012 5023 4.273235 CACCCAAAAGAAAAACAATGCTCC 59.727 41.667 0.00 0.00 0.00 4.70
3013 5024 5.115480 TCACCCAAAAGAAAAACAATGCTC 58.885 37.500 0.00 0.00 0.00 4.26
3014 5025 5.096443 TCACCCAAAAGAAAAACAATGCT 57.904 34.783 0.00 0.00 0.00 3.79
3015 5026 5.809719 TTCACCCAAAAGAAAAACAATGC 57.190 34.783 0.00 0.00 0.00 3.56
3016 5027 8.430801 TGTATTCACCCAAAAGAAAAACAATG 57.569 30.769 0.00 0.00 0.00 2.82
3017 5028 8.482128 TCTGTATTCACCCAAAAGAAAAACAAT 58.518 29.630 0.00 0.00 0.00 2.71
3018 5029 7.841956 TCTGTATTCACCCAAAAGAAAAACAA 58.158 30.769 0.00 0.00 0.00 2.83
3019 5030 7.411486 TCTGTATTCACCCAAAAGAAAAACA 57.589 32.000 0.00 0.00 0.00 2.83
3020 5031 6.420903 GCTCTGTATTCACCCAAAAGAAAAAC 59.579 38.462 0.00 0.00 0.00 2.43
3021 5032 6.097554 TGCTCTGTATTCACCCAAAAGAAAAA 59.902 34.615 0.00 0.00 0.00 1.94
3022 5033 5.596361 TGCTCTGTATTCACCCAAAAGAAAA 59.404 36.000 0.00 0.00 0.00 2.29
3023 5034 5.136828 TGCTCTGTATTCACCCAAAAGAAA 58.863 37.500 0.00 0.00 0.00 2.52
3024 5035 4.724399 TGCTCTGTATTCACCCAAAAGAA 58.276 39.130 0.00 0.00 0.00 2.52
3025 5036 4.365514 TGCTCTGTATTCACCCAAAAGA 57.634 40.909 0.00 0.00 0.00 2.52
3026 5037 5.047802 ACAATGCTCTGTATTCACCCAAAAG 60.048 40.000 0.00 0.00 0.00 2.27
3027 5038 4.832266 ACAATGCTCTGTATTCACCCAAAA 59.168 37.500 0.00 0.00 0.00 2.44
3028 5039 4.406456 ACAATGCTCTGTATTCACCCAAA 58.594 39.130 0.00 0.00 0.00 3.28
3029 5040 4.032960 ACAATGCTCTGTATTCACCCAA 57.967 40.909 0.00 0.00 0.00 4.12
3030 5041 3.719268 ACAATGCTCTGTATTCACCCA 57.281 42.857 0.00 0.00 0.00 4.51
3031 5042 4.009675 TCAACAATGCTCTGTATTCACCC 58.990 43.478 0.00 0.00 0.00 4.61
3032 5043 5.627499 TTCAACAATGCTCTGTATTCACC 57.373 39.130 0.00 0.00 0.00 4.02
3039 5050 9.890629 TTACTCTAATATTCAACAATGCTCTGT 57.109 29.630 0.00 0.00 0.00 3.41
3104 5115 8.557029 GCCGTTTTGCTAGTTTATAATCATACT 58.443 33.333 0.00 0.00 0.00 2.12
3105 5116 7.801783 GGCCGTTTTGCTAGTTTATAATCATAC 59.198 37.037 0.00 0.00 0.00 2.39
3106 5117 7.040961 GGGCCGTTTTGCTAGTTTATAATCATA 60.041 37.037 0.00 0.00 0.00 2.15
3107 5118 6.238925 GGGCCGTTTTGCTAGTTTATAATCAT 60.239 38.462 0.00 0.00 0.00 2.45
3108 5119 5.066764 GGGCCGTTTTGCTAGTTTATAATCA 59.933 40.000 0.00 0.00 0.00 2.57
3109 5120 5.516996 GGGCCGTTTTGCTAGTTTATAATC 58.483 41.667 0.00 0.00 0.00 1.75
3110 5121 4.035909 CGGGCCGTTTTGCTAGTTTATAAT 59.964 41.667 19.97 0.00 0.00 1.28
3111 5122 3.374678 CGGGCCGTTTTGCTAGTTTATAA 59.625 43.478 19.97 0.00 0.00 0.98
3112 5123 2.937799 CGGGCCGTTTTGCTAGTTTATA 59.062 45.455 19.97 0.00 0.00 0.98
3113 5124 1.741145 CGGGCCGTTTTGCTAGTTTAT 59.259 47.619 19.97 0.00 0.00 1.40
3114 5125 1.158434 CGGGCCGTTTTGCTAGTTTA 58.842 50.000 19.97 0.00 0.00 2.01
3115 5126 0.820482 ACGGGCCGTTTTGCTAGTTT 60.820 50.000 28.83 0.00 36.35 2.66
3116 5127 1.228033 ACGGGCCGTTTTGCTAGTT 60.228 52.632 28.83 0.00 36.35 2.24
3117 5128 1.964373 CACGGGCCGTTTTGCTAGT 60.964 57.895 32.12 0.16 38.32 2.57
3118 5129 2.686816 CCACGGGCCGTTTTGCTAG 61.687 63.158 32.12 16.35 38.32 3.42
3119 5130 2.670251 CCACGGGCCGTTTTGCTA 60.670 61.111 32.12 0.00 38.32 3.49
3122 5133 3.220658 AACCCACGGGCCGTTTTG 61.221 61.111 32.12 22.20 38.32 2.44
3123 5134 3.220658 CAACCCACGGGCCGTTTT 61.221 61.111 32.12 19.71 38.32 2.43
3131 5142 4.939368 TCCCGTTGCAACCCACGG 62.939 66.667 23.42 20.90 44.50 4.94
3132 5143 3.353836 CTCCCGTTGCAACCCACG 61.354 66.667 23.42 12.75 0.00 4.94
3133 5144 1.104577 TTTCTCCCGTTGCAACCCAC 61.105 55.000 23.42 0.00 0.00 4.61
3134 5145 0.821711 CTTTCTCCCGTTGCAACCCA 60.822 55.000 23.42 6.78 0.00 4.51
3135 5146 0.536460 TCTTTCTCCCGTTGCAACCC 60.536 55.000 23.42 0.00 0.00 4.11
3136 5147 1.314730 TTCTTTCTCCCGTTGCAACC 58.685 50.000 23.42 6.48 0.00 3.77
3137 5148 3.004315 TGATTTCTTTCTCCCGTTGCAAC 59.996 43.478 19.89 19.89 0.00 4.17
3138 5149 3.218453 TGATTTCTTTCTCCCGTTGCAA 58.782 40.909 0.00 0.00 0.00 4.08
3139 5150 2.857483 TGATTTCTTTCTCCCGTTGCA 58.143 42.857 0.00 0.00 0.00 4.08
3140 5151 5.560966 TTATGATTTCTTTCTCCCGTTGC 57.439 39.130 0.00 0.00 0.00 4.17
3141 5152 7.254932 GGAGATTATGATTTCTTTCTCCCGTTG 60.255 40.741 5.64 0.00 42.15 4.10
3142 5153 6.768381 GGAGATTATGATTTCTTTCTCCCGTT 59.232 38.462 5.64 0.00 42.15 4.44
3143 5154 6.292150 GGAGATTATGATTTCTTTCTCCCGT 58.708 40.000 5.64 0.00 42.15 5.28
3144 5155 5.406780 CGGAGATTATGATTTCTTTCTCCCG 59.593 44.000 10.34 0.00 44.10 5.14
3145 5156 6.525629 TCGGAGATTATGATTTCTTTCTCCC 58.474 40.000 10.34 0.00 44.10 4.30
3146 5157 7.118971 CCATCGGAGATTATGATTTCTTTCTCC 59.881 40.741 6.69 6.69 45.12 3.71
3147 5158 7.360776 GCCATCGGAGATTATGATTTCTTTCTC 60.361 40.741 0.00 0.00 45.12 2.87
3148 5159 6.429385 GCCATCGGAGATTATGATTTCTTTCT 59.571 38.462 0.00 0.00 45.12 2.52
3149 5160 6.348868 GGCCATCGGAGATTATGATTTCTTTC 60.349 42.308 0.00 0.00 45.12 2.62
3150 5161 5.474876 GGCCATCGGAGATTATGATTTCTTT 59.525 40.000 0.00 0.00 45.12 2.52
3151 5162 5.006386 GGCCATCGGAGATTATGATTTCTT 58.994 41.667 0.00 0.00 45.12 2.52
3152 5163 4.042062 TGGCCATCGGAGATTATGATTTCT 59.958 41.667 0.00 0.00 45.12 2.52
3153 5164 4.326826 TGGCCATCGGAGATTATGATTTC 58.673 43.478 0.00 0.00 45.12 2.17
3154 5165 4.371624 TGGCCATCGGAGATTATGATTT 57.628 40.909 0.00 0.00 45.12 2.17
3155 5166 4.019051 TCATGGCCATCGGAGATTATGATT 60.019 41.667 17.61 0.00 45.12 2.57
3156 5167 3.520721 TCATGGCCATCGGAGATTATGAT 59.479 43.478 17.61 0.00 45.12 2.45
3157 5168 2.905736 TCATGGCCATCGGAGATTATGA 59.094 45.455 17.61 4.53 45.12 2.15
3158 5169 3.005554 GTCATGGCCATCGGAGATTATG 58.994 50.000 17.61 1.64 45.12 1.90
3159 5170 2.026822 GGTCATGGCCATCGGAGATTAT 60.027 50.000 17.61 0.00 45.12 1.28
3160 5171 1.347707 GGTCATGGCCATCGGAGATTA 59.652 52.381 17.61 0.00 45.12 1.75
3161 5172 0.109342 GGTCATGGCCATCGGAGATT 59.891 55.000 17.61 0.00 45.12 2.40
3162 5173 1.056125 TGGTCATGGCCATCGGAGAT 61.056 55.000 17.02 0.00 45.12 2.75
3163 5174 1.688884 TGGTCATGGCCATCGGAGA 60.689 57.895 17.02 7.41 45.75 3.71
3164 5175 1.524621 GTGGTCATGGCCATCGGAG 60.525 63.158 24.46 4.60 41.08 4.63
3165 5176 1.634865 ATGTGGTCATGGCCATCGGA 61.635 55.000 24.46 8.69 41.08 4.55
3166 5177 0.752743 AATGTGGTCATGGCCATCGG 60.753 55.000 24.46 5.90 41.08 4.18
3167 5178 1.105457 AAATGTGGTCATGGCCATCG 58.895 50.000 24.46 11.99 41.08 3.84
3168 5179 2.896168 CAAAATGTGGTCATGGCCATC 58.104 47.619 24.46 16.37 41.08 3.51
3169 5180 1.065998 GCAAAATGTGGTCATGGCCAT 60.066 47.619 24.46 14.09 41.08 4.40
3170 5181 0.321021 GCAAAATGTGGTCATGGCCA 59.679 50.000 17.02 17.02 34.19 5.36
3171 5182 0.609662 AGCAAAATGTGGTCATGGCC 59.390 50.000 10.20 10.20 34.19 5.36
3172 5183 1.717194 CAGCAAAATGTGGTCATGGC 58.283 50.000 0.00 0.00 35.13 4.40
3173 5184 1.001068 TGCAGCAAAATGTGGTCATGG 59.999 47.619 0.00 0.00 35.13 3.66
3174 5185 2.442212 TGCAGCAAAATGTGGTCATG 57.558 45.000 0.00 0.00 35.13 3.07
3175 5186 2.563620 TGATGCAGCAAAATGTGGTCAT 59.436 40.909 0.00 0.00 35.13 3.06
3176 5187 1.962100 TGATGCAGCAAAATGTGGTCA 59.038 42.857 0.00 0.00 35.13 4.02
3177 5188 2.331194 GTGATGCAGCAAAATGTGGTC 58.669 47.619 6.05 0.00 35.13 4.02
3178 5189 1.001181 GGTGATGCAGCAAAATGTGGT 59.999 47.619 6.05 0.00 38.97 4.16
3179 5190 1.717194 GGTGATGCAGCAAAATGTGG 58.283 50.000 6.05 0.00 0.00 4.17
3180 5191 1.068402 TCGGTGATGCAGCAAAATGTG 60.068 47.619 6.05 0.00 0.00 3.21
3181 5192 1.200716 CTCGGTGATGCAGCAAAATGT 59.799 47.619 6.05 0.00 0.00 2.71
3182 5193 1.469703 TCTCGGTGATGCAGCAAAATG 59.530 47.619 6.05 0.00 0.00 2.32
3183 5194 1.825090 TCTCGGTGATGCAGCAAAAT 58.175 45.000 6.05 0.00 0.00 1.82
3184 5195 1.825090 ATCTCGGTGATGCAGCAAAA 58.175 45.000 6.05 0.00 33.43 2.44
3185 5196 2.279741 GTATCTCGGTGATGCAGCAAA 58.720 47.619 6.05 0.00 37.65 3.68
3186 5197 1.206849 TGTATCTCGGTGATGCAGCAA 59.793 47.619 6.05 0.00 41.66 3.91
3187 5198 0.823460 TGTATCTCGGTGATGCAGCA 59.177 50.000 0.00 0.00 41.66 4.41
3188 5199 3.667448 TGTATCTCGGTGATGCAGC 57.333 52.632 6.72 0.00 41.66 5.25
3191 5202 5.473931 AGTGATAATGTATCTCGGTGATGC 58.526 41.667 2.94 2.36 38.12 3.91
3192 5203 6.918626 AGAGTGATAATGTATCTCGGTGATG 58.081 40.000 2.94 0.00 36.65 3.07
3193 5204 6.717084 TGAGAGTGATAATGTATCTCGGTGAT 59.283 38.462 0.00 0.00 39.39 3.06
3194 5205 6.062095 TGAGAGTGATAATGTATCTCGGTGA 58.938 40.000 0.00 0.00 39.39 4.02
3195 5206 6.319141 TGAGAGTGATAATGTATCTCGGTG 57.681 41.667 0.00 0.00 39.39 4.94
3196 5207 7.531857 AATGAGAGTGATAATGTATCTCGGT 57.468 36.000 0.00 0.00 39.39 4.69
3197 5208 8.824159 AAAATGAGAGTGATAATGTATCTCGG 57.176 34.615 0.00 0.00 39.39 4.63
3198 5209 8.634265 CGAAAATGAGAGTGATAATGTATCTCG 58.366 37.037 0.00 0.00 39.39 4.04
3199 5210 9.469807 ACGAAAATGAGAGTGATAATGTATCTC 57.530 33.333 0.00 0.00 37.50 2.75
3200 5211 9.254133 CACGAAAATGAGAGTGATAATGTATCT 57.746 33.333 0.00 0.00 36.79 1.98
3201 5212 9.249457 TCACGAAAATGAGAGTGATAATGTATC 57.751 33.333 0.00 0.00 38.52 2.24
3202 5213 9.599866 TTCACGAAAATGAGAGTGATAATGTAT 57.400 29.630 0.00 0.00 42.29 2.29
3203 5214 8.996024 TTCACGAAAATGAGAGTGATAATGTA 57.004 30.769 0.00 0.00 42.29 2.29
3204 5215 7.905604 TTCACGAAAATGAGAGTGATAATGT 57.094 32.000 0.00 0.00 42.29 2.71
3205 5216 9.430838 GATTTCACGAAAATGAGAGTGATAATG 57.569 33.333 5.48 0.00 42.29 1.90
3206 5217 9.166173 TGATTTCACGAAAATGAGAGTGATAAT 57.834 29.630 5.48 2.47 42.29 1.28
3207 5218 8.546597 TGATTTCACGAAAATGAGAGTGATAA 57.453 30.769 5.48 0.00 42.29 1.75
3208 5219 8.606602 CATGATTTCACGAAAATGAGAGTGATA 58.393 33.333 5.48 0.00 42.29 2.15
3209 5220 7.335171 TCATGATTTCACGAAAATGAGAGTGAT 59.665 33.333 0.00 0.00 42.29 3.06
3210 5221 6.650390 TCATGATTTCACGAAAATGAGAGTGA 59.350 34.615 0.00 0.00 41.24 3.41
3211 5222 6.834876 TCATGATTTCACGAAAATGAGAGTG 58.165 36.000 0.00 0.00 37.70 3.51
3212 5223 7.041167 TGTTCATGATTTCACGAAAATGAGAGT 60.041 33.333 0.00 0.00 37.70 3.24
3213 5224 7.300320 TGTTCATGATTTCACGAAAATGAGAG 58.700 34.615 0.00 0.00 37.70 3.20
3214 5225 7.200778 TGTTCATGATTTCACGAAAATGAGA 57.799 32.000 0.00 0.00 37.70 3.27
3215 5226 7.856492 TTGTTCATGATTTCACGAAAATGAG 57.144 32.000 0.00 0.00 37.70 2.90
3216 5227 8.815141 AATTGTTCATGATTTCACGAAAATGA 57.185 26.923 0.00 0.24 37.70 2.57
3217 5228 9.866936 AAAATTGTTCATGATTTCACGAAAATG 57.133 25.926 0.00 0.00 37.70 2.32
3219 5230 9.913451 GAAAAATTGTTCATGATTTCACGAAAA 57.087 25.926 3.32 0.00 29.43 2.29
3220 5231 9.091784 TGAAAAATTGTTCATGATTTCACGAAA 57.908 25.926 6.98 0.00 32.56 3.46
3221 5232 8.640091 TGAAAAATTGTTCATGATTTCACGAA 57.360 26.923 6.98 1.12 32.56 3.85
3222 5233 8.640091 TTGAAAAATTGTTCATGATTTCACGA 57.360 26.923 11.86 4.00 37.36 4.35
3223 5234 9.699985 TTTTGAAAAATTGTTCATGATTTCACG 57.300 25.926 11.86 0.00 37.36 4.35
3383 5394 9.607988 TCGATTCTAGAAATGTTTGCCTATTTA 57.392 29.630 9.71 0.00 0.00 1.40
3384 5395 8.398665 GTCGATTCTAGAAATGTTTGCCTATTT 58.601 33.333 9.71 0.00 0.00 1.40
3385 5396 7.254455 CGTCGATTCTAGAAATGTTTGCCTATT 60.254 37.037 9.71 0.00 0.00 1.73
3386 5397 6.201044 CGTCGATTCTAGAAATGTTTGCCTAT 59.799 38.462 9.71 0.00 0.00 2.57
3387 5398 5.518847 CGTCGATTCTAGAAATGTTTGCCTA 59.481 40.000 9.71 0.00 0.00 3.93
3388 5399 4.330074 CGTCGATTCTAGAAATGTTTGCCT 59.670 41.667 9.71 0.00 0.00 4.75
3389 5400 4.092968 ACGTCGATTCTAGAAATGTTTGCC 59.907 41.667 9.71 0.00 0.00 4.52
3390 5401 5.204673 ACGTCGATTCTAGAAATGTTTGC 57.795 39.130 9.71 0.00 0.00 3.68
3391 5402 7.273188 TGTACGTCGATTCTAGAAATGTTTG 57.727 36.000 9.71 0.00 0.00 2.93
3392 5403 8.475331 AATGTACGTCGATTCTAGAAATGTTT 57.525 30.769 9.71 0.00 0.00 2.83
3393 5404 8.475331 AAATGTACGTCGATTCTAGAAATGTT 57.525 30.769 9.71 0.00 0.00 2.71
3394 5405 8.475331 AAAATGTACGTCGATTCTAGAAATGT 57.525 30.769 9.71 7.44 0.00 2.71
3418 5429 8.499403 AAAATTCTTTCACCGATTTCCAAAAA 57.501 26.923 0.00 0.00 0.00 1.94
3419 5430 8.394121 CAAAAATTCTTTCACCGATTTCCAAAA 58.606 29.630 0.00 0.00 0.00 2.44
3420 5431 7.766278 TCAAAAATTCTTTCACCGATTTCCAAA 59.234 29.630 0.00 0.00 0.00 3.28
3421 5432 7.268586 TCAAAAATTCTTTCACCGATTTCCAA 58.731 30.769 0.00 0.00 0.00 3.53
3422 5433 6.810911 TCAAAAATTCTTTCACCGATTTCCA 58.189 32.000 0.00 0.00 0.00 3.53
3423 5434 7.707774 TTCAAAAATTCTTTCACCGATTTCC 57.292 32.000 0.00 0.00 0.00 3.13
3426 5437 9.323985 TGAATTTCAAAAATTCTTTCACCGATT 57.676 25.926 20.03 0.00 37.50 3.34
3427 5438 8.885494 TGAATTTCAAAAATTCTTTCACCGAT 57.115 26.923 20.03 0.00 37.50 4.18
3428 5439 8.763356 CATGAATTTCAAAAATTCTTTCACCGA 58.237 29.630 20.03 4.29 37.50 4.69
3429 5440 8.763356 TCATGAATTTCAAAAATTCTTTCACCG 58.237 29.630 20.03 7.40 37.50 4.94
3487 5498 9.611284 GTTCGCTAATTCAAAATATATCATGCA 57.389 29.630 0.00 0.00 0.00 3.96
3488 5499 9.611284 TGTTCGCTAATTCAAAATATATCATGC 57.389 29.630 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.