Multiple sequence alignment - TraesCS3D01G139600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G139600 chr3D 100.000 3909 0 0 1 3909 99751828 99747920 0.000000e+00 7219.0
1 TraesCS3D01G139600 chr3B 94.482 1323 68 5 905 2225 150156944 150155625 0.000000e+00 2034.0
2 TraesCS3D01G139600 chr3B 94.752 1029 44 4 2238 3257 150155644 150154617 0.000000e+00 1592.0
3 TraesCS3D01G139600 chr3B 92.564 901 30 14 1 869 150158111 150157216 0.000000e+00 1258.0
4 TraesCS3D01G139600 chr3B 92.171 281 12 5 3337 3612 150154613 150154338 4.740000e-104 388.0
5 TraesCS3D01G139600 chr3A 89.690 1484 88 26 498 1974 117230464 117229039 0.000000e+00 1832.0
6 TraesCS3D01G139600 chr3A 85.976 984 75 25 2261 3201 117228701 117227738 0.000000e+00 994.0
7 TraesCS3D01G139600 chr3A 95.652 276 12 0 1 276 117234540 117234265 9.970000e-121 444.0
8 TraesCS3D01G139600 chr3A 97.561 41 1 0 3200 3240 117225923 117225883 1.950000e-08 71.3
9 TraesCS3D01G139600 chrUn 97.595 291 7 0 3619 3909 108901129 108901419 2.100000e-137 499.0
10 TraesCS3D01G139600 chr2D 96.907 291 9 0 3619 3909 651598419 651598709 4.540000e-134 488.0
11 TraesCS3D01G139600 chr6B 95.548 292 11 2 3619 3909 368478843 368478553 2.130000e-127 466.0
12 TraesCS3D01G139600 chr5D 94.863 292 13 2 3619 3909 450669802 450669512 4.600000e-124 455.0
13 TraesCS3D01G139600 chr5A 94.863 292 14 1 3619 3909 38799472 38799763 4.600000e-124 455.0
14 TraesCS3D01G139600 chr4A 94.845 291 15 0 3619 3909 666451126 666450836 4.600000e-124 455.0
15 TraesCS3D01G139600 chr1D 94.863 292 14 1 3619 3909 401355083 401354792 4.600000e-124 455.0
16 TraesCS3D01G139600 chr1B 94.828 290 13 2 3619 3907 217775914 217776202 5.960000e-123 451.0
17 TraesCS3D01G139600 chr2B 94.539 293 12 3 3618 3909 173304083 173304372 2.140000e-122 449.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G139600 chr3D 99747920 99751828 3908 True 7219.000 7219 100.00000 1 3909 1 chr3D.!!$R1 3908
1 TraesCS3D01G139600 chr3B 150154338 150158111 3773 True 1318.000 2034 93.49225 1 3612 4 chr3B.!!$R1 3611
2 TraesCS3D01G139600 chr3A 117225883 117234540 8657 True 835.325 1832 92.21975 1 3240 4 chr3A.!!$R1 3239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.107848 TTGGCCCGAAACTAGCTAGC 60.108 55.0 20.91 6.62 0.00 3.42 F
500 4067 0.176910 GCCCTGTGAGGTCTTAGAGC 59.823 60.0 2.85 2.85 31.93 4.09 F
501 4068 0.457851 CCCTGTGAGGTCTTAGAGCG 59.542 60.0 5.75 0.00 35.00 5.03 F
1458 5283 0.782384 CCGACGAACAAGAAGAACCG 59.218 55.0 0.00 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 5034 1.003233 AAAGGGCGAGAGAGCAACC 60.003 57.895 0.00 0.0 39.27 3.77 R
1374 5199 1.070786 GGAGACGAAGGTGTTGGCA 59.929 57.895 0.00 0.0 0.00 4.92 R
1746 5571 1.216178 CATGCTCCCGCCAAAAAGG 59.784 57.895 0.00 0.0 41.84 3.11 R
3321 9114 0.033504 TGGTTCTCTGTCAACCTCGC 59.966 55.000 10.47 0.0 43.43 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 0.107848 TTGGCCCGAAACTAGCTAGC 60.108 55.000 20.91 6.62 0.00 3.42
104 105 1.154814 GCCCGAAACTAGCTAGCTGC 61.155 60.000 27.68 15.12 43.29 5.25
259 260 4.953781 TCCCTTTGATTCCCAAGATCTT 57.046 40.909 0.88 0.88 35.94 2.40
294 311 3.496870 GCTACCCAGTTTATCCCATGGAG 60.497 52.174 15.22 3.25 34.05 3.86
298 315 2.689983 CCAGTTTATCCCATGGAGTTGC 59.310 50.000 15.22 0.00 34.05 4.17
323 349 3.673338 GGAACAGCGTTTCTATTTTTGCC 59.327 43.478 1.08 0.00 0.00 4.52
327 353 4.082949 ACAGCGTTTCTATTTTTGCCTACC 60.083 41.667 0.00 0.00 0.00 3.18
363 389 2.413453 GCAGTTAGCCGTCTTTCTCTTG 59.587 50.000 0.00 0.00 37.23 3.02
378 404 8.184192 GTCTTTCTCTTGTTGTTTCATCAAGAA 58.816 33.333 17.81 10.37 44.32 2.52
444 4005 2.010582 CTCACCGGAGTAGGAGCTGC 62.011 65.000 9.46 0.00 36.36 5.25
495 4062 4.021925 GCCGCCCTGTGAGGTCTT 62.022 66.667 0.00 0.00 36.09 3.01
496 4063 2.656069 GCCGCCCTGTGAGGTCTTA 61.656 63.158 0.00 0.00 36.09 2.10
497 4064 1.517832 CCGCCCTGTGAGGTCTTAG 59.482 63.158 0.00 0.00 31.93 2.18
498 4065 0.970937 CCGCCCTGTGAGGTCTTAGA 60.971 60.000 0.00 0.00 31.93 2.10
499 4066 0.457851 CGCCCTGTGAGGTCTTAGAG 59.542 60.000 0.00 0.00 31.93 2.43
500 4067 0.176910 GCCCTGTGAGGTCTTAGAGC 59.823 60.000 2.85 2.85 31.93 4.09
501 4068 0.457851 CCCTGTGAGGTCTTAGAGCG 59.542 60.000 5.75 0.00 35.00 5.03
502 4069 1.464734 CCTGTGAGGTCTTAGAGCGA 58.535 55.000 5.75 0.00 35.00 4.93
605 4188 1.153997 GTCACTCCTCCGAGCGAAC 60.154 63.158 0.00 0.00 40.03 3.95
628 4211 4.824515 CTCTCCCCTCGTCGGCCT 62.825 72.222 0.00 0.00 0.00 5.19
911 4501 2.370123 CCCCCTCCCACCATCCAT 60.370 66.667 0.00 0.00 0.00 3.41
912 4502 1.073008 CCCCCTCCCACCATCCATA 60.073 63.158 0.00 0.00 0.00 2.74
926 4751 2.787473 TCCATAAACCTCACTGCCAG 57.213 50.000 0.00 0.00 0.00 4.85
995 4820 3.630312 TCGTGTAGTGATCGGATCAATCA 59.370 43.478 22.57 16.92 41.69 2.57
1209 5034 3.131577 ACATATGCCAGGTGCTTGAATTG 59.868 43.478 1.58 0.00 42.00 2.32
1227 5052 1.003233 GGTTGCTCTCTCGCCCTTT 60.003 57.895 0.00 0.00 0.00 3.11
1232 5057 1.518133 CTCTCTCGCCCTTTCGCTG 60.518 63.158 0.00 0.00 0.00 5.18
1263 5088 4.281527 TTTTTGCCCCGGCCGGTA 62.282 61.111 40.52 24.64 41.09 4.02
1356 5181 2.575993 CTGCTCTGCCGTAGCTGT 59.424 61.111 0.00 0.00 40.73 4.40
1381 5206 3.208383 CCGTGCACACTGCCAACA 61.208 61.111 18.64 0.00 44.23 3.33
1458 5283 0.782384 CCGACGAACAAGAAGAACCG 59.218 55.000 0.00 0.00 0.00 4.44
1470 5295 4.021925 GAACCGGTGCCAGAGCCT 62.022 66.667 8.52 0.00 38.69 4.58
1532 5357 3.747976 GCAACCACCGATGTGCCC 61.748 66.667 0.00 0.00 41.35 5.36
1794 5619 3.606886 GCTGGACGAGTTCTTTGGA 57.393 52.632 0.00 0.00 0.00 3.53
1919 5744 7.062605 GTCGCAGTATTAACACTTAGCAGTTAA 59.937 37.037 11.21 11.21 42.39 2.01
1983 5907 4.725790 AAATAGCAATTCTGGCAACCTC 57.274 40.909 0.00 0.00 0.00 3.85
2011 5938 7.755591 TCATGATCTTGAGTCAAGCAATTTAC 58.244 34.615 25.31 12.22 40.84 2.01
2034 5961 1.667724 GATCTGCATCCTGGAACGTTG 59.332 52.381 5.00 0.00 0.00 4.10
2091 6018 5.722021 ATCTTACTTTCACCGGCAATTTT 57.278 34.783 0.00 0.00 0.00 1.82
2154 6081 5.056480 TCACGATTGACATGTTTCTGAACT 58.944 37.500 0.00 0.00 36.70 3.01
2162 6089 7.099266 TGACATGTTTCTGAACTCACAAAAT 57.901 32.000 0.00 0.00 36.70 1.82
2209 6137 2.959030 TGAACAGCTCGCTCCAGTATAT 59.041 45.455 0.00 0.00 0.00 0.86
2210 6138 4.142038 TGAACAGCTCGCTCCAGTATATA 58.858 43.478 0.00 0.00 0.00 0.86
2211 6139 4.216472 TGAACAGCTCGCTCCAGTATATAG 59.784 45.833 0.00 0.00 0.00 1.31
2212 6140 3.757270 ACAGCTCGCTCCAGTATATAGT 58.243 45.455 0.00 0.00 0.00 2.12
2213 6141 4.907809 ACAGCTCGCTCCAGTATATAGTA 58.092 43.478 0.00 0.00 0.00 1.82
2214 6142 4.938832 ACAGCTCGCTCCAGTATATAGTAG 59.061 45.833 0.00 0.00 0.00 2.57
2215 6143 3.942748 AGCTCGCTCCAGTATATAGTAGC 59.057 47.826 3.18 3.18 0.00 3.58
2216 6144 3.942748 GCTCGCTCCAGTATATAGTAGCT 59.057 47.826 9.60 0.00 0.00 3.32
2217 6145 5.104859 AGCTCGCTCCAGTATATAGTAGCTA 60.105 44.000 8.04 0.00 33.09 3.32
2218 6146 5.235616 GCTCGCTCCAGTATATAGTAGCTAG 59.764 48.000 9.60 9.03 0.00 3.42
2219 6147 5.117584 TCGCTCCAGTATATAGTAGCTAGC 58.882 45.833 6.62 6.62 0.00 3.42
2220 6148 4.273969 CGCTCCAGTATATAGTAGCTAGCC 59.726 50.000 12.13 0.00 0.00 3.93
2221 6149 5.442391 GCTCCAGTATATAGTAGCTAGCCT 58.558 45.833 12.13 4.79 0.00 4.58
2222 6150 5.889289 GCTCCAGTATATAGTAGCTAGCCTT 59.111 44.000 12.13 0.00 0.00 4.35
2223 6151 6.038936 GCTCCAGTATATAGTAGCTAGCCTTC 59.961 46.154 12.13 2.01 0.00 3.46
2224 6152 6.424883 TCCAGTATATAGTAGCTAGCCTTCC 58.575 44.000 12.13 0.00 0.00 3.46
2225 6153 6.217900 TCCAGTATATAGTAGCTAGCCTTCCT 59.782 42.308 12.13 4.72 0.00 3.36
2226 6154 6.893005 CCAGTATATAGTAGCTAGCCTTCCTT 59.107 42.308 12.13 0.00 0.00 3.36
2227 6155 7.397761 CCAGTATATAGTAGCTAGCCTTCCTTT 59.602 40.741 12.13 0.37 0.00 3.11
2228 6156 8.808092 CAGTATATAGTAGCTAGCCTTCCTTTT 58.192 37.037 12.13 0.00 0.00 2.27
2229 6157 9.027202 AGTATATAGTAGCTAGCCTTCCTTTTC 57.973 37.037 12.13 0.00 0.00 2.29
2230 6158 3.528597 AGTAGCTAGCCTTCCTTTTCG 57.471 47.619 12.13 0.00 0.00 3.46
2231 6159 3.097614 AGTAGCTAGCCTTCCTTTTCGA 58.902 45.455 12.13 0.00 0.00 3.71
2232 6160 3.514309 AGTAGCTAGCCTTCCTTTTCGAA 59.486 43.478 12.13 0.00 0.00 3.71
2233 6161 3.418684 AGCTAGCCTTCCTTTTCGAAA 57.581 42.857 12.13 6.47 0.00 3.46
2234 6162 3.751518 AGCTAGCCTTCCTTTTCGAAAA 58.248 40.909 21.35 21.35 0.00 2.29
2235 6163 4.142038 AGCTAGCCTTCCTTTTCGAAAAA 58.858 39.130 22.67 7.78 0.00 1.94
2353 6281 3.709633 TCGTCGTCCTCCTCCGGA 61.710 66.667 2.93 2.93 0.00 5.14
2417 6345 2.114625 TCCACTGGTCGAGGTCGT 59.885 61.111 0.00 0.00 40.80 4.34
2609 6537 3.514510 CGATGCTAACATGGCAACG 57.485 52.632 9.82 9.82 45.79 4.10
2648 6576 3.822192 CGATCAGGTCGTGCCGGA 61.822 66.667 5.05 4.54 45.19 5.14
2661 6589 0.107703 TGCCGGAACTAGATTGCAGG 60.108 55.000 5.05 0.87 0.00 4.85
2670 6602 0.608130 TAGATTGCAGGTCGTGTGCT 59.392 50.000 7.67 0.00 41.78 4.40
2756 6698 5.538813 TGGGCTAGTGGTTAGTATGATACTG 59.461 44.000 15.08 0.00 39.81 2.74
2783 6725 4.105486 CCACATACATATACCGCAGATCG 58.895 47.826 0.00 0.00 38.08 3.69
2834 6788 0.398696 TACGGGGTCTGTTTGTGCAT 59.601 50.000 0.00 0.00 0.00 3.96
2900 6856 9.297586 GAAAACAGTGGTAAAAACTAAGGAAAG 57.702 33.333 0.00 0.00 0.00 2.62
2901 6857 6.954487 ACAGTGGTAAAAACTAAGGAAAGG 57.046 37.500 0.00 0.00 0.00 3.11
2902 6858 5.301045 ACAGTGGTAAAAACTAAGGAAAGGC 59.699 40.000 0.00 0.00 0.00 4.35
2939 6895 2.512692 TGCAATGGTTGGCACTAGAT 57.487 45.000 0.00 0.00 34.58 1.98
2948 6904 3.763897 GGTTGGCACTAGATGTTTGGAAT 59.236 43.478 0.00 0.00 0.00 3.01
3143 7119 1.069500 ACGTGCGTGTTGGATTAAAGC 60.069 47.619 0.00 0.00 0.00 3.51
3166 7142 4.535781 TGGGGTTGTTATGATTGGATCAG 58.464 43.478 0.00 0.00 43.53 2.90
3246 9039 4.404073 AGTGCAAGTGTAAATGTTGGGAAA 59.596 37.500 0.00 0.00 0.00 3.13
3260 9053 2.320826 TGGGAAATTTTTGCCCAGGCA 61.321 47.619 7.43 7.43 46.57 4.75
3272 9065 3.713902 CCAGGCATAGGGATGTGAC 57.286 57.895 0.00 0.00 35.30 3.67
3273 9066 1.135094 CCAGGCATAGGGATGTGACT 58.865 55.000 0.00 0.00 35.30 3.41
3274 9067 1.492176 CCAGGCATAGGGATGTGACTT 59.508 52.381 0.00 0.00 35.30 3.01
3275 9068 2.569059 CAGGCATAGGGATGTGACTTG 58.431 52.381 0.00 0.00 35.30 3.16
3276 9069 2.092753 CAGGCATAGGGATGTGACTTGT 60.093 50.000 0.00 0.00 35.30 3.16
3277 9070 2.092753 AGGCATAGGGATGTGACTTGTG 60.093 50.000 0.00 0.00 35.30 3.33
3278 9071 2.092968 GGCATAGGGATGTGACTTGTGA 60.093 50.000 0.00 0.00 35.30 3.58
3279 9072 3.201290 GCATAGGGATGTGACTTGTGAG 58.799 50.000 0.00 0.00 35.30 3.51
3280 9073 3.118629 GCATAGGGATGTGACTTGTGAGA 60.119 47.826 0.00 0.00 35.30 3.27
3281 9074 4.437239 CATAGGGATGTGACTTGTGAGAC 58.563 47.826 0.00 0.00 0.00 3.36
3282 9075 2.614259 AGGGATGTGACTTGTGAGACT 58.386 47.619 0.00 0.00 0.00 3.24
3283 9076 2.975489 AGGGATGTGACTTGTGAGACTT 59.025 45.455 0.00 0.00 0.00 3.01
3284 9077 3.070018 GGGATGTGACTTGTGAGACTTG 58.930 50.000 0.00 0.00 0.00 3.16
3285 9078 3.070018 GGATGTGACTTGTGAGACTTGG 58.930 50.000 0.00 0.00 0.00 3.61
3286 9079 2.620251 TGTGACTTGTGAGACTTGGG 57.380 50.000 0.00 0.00 0.00 4.12
3287 9080 2.115427 TGTGACTTGTGAGACTTGGGA 58.885 47.619 0.00 0.00 0.00 4.37
3288 9081 2.103094 TGTGACTTGTGAGACTTGGGAG 59.897 50.000 0.00 0.00 0.00 4.30
3289 9082 2.365617 GTGACTTGTGAGACTTGGGAGA 59.634 50.000 0.00 0.00 0.00 3.71
3290 9083 3.007398 GTGACTTGTGAGACTTGGGAGAT 59.993 47.826 0.00 0.00 0.00 2.75
3291 9084 3.648067 TGACTTGTGAGACTTGGGAGATT 59.352 43.478 0.00 0.00 0.00 2.40
3292 9085 4.103153 TGACTTGTGAGACTTGGGAGATTT 59.897 41.667 0.00 0.00 0.00 2.17
3293 9086 5.306937 TGACTTGTGAGACTTGGGAGATTTA 59.693 40.000 0.00 0.00 0.00 1.40
3294 9087 5.799213 ACTTGTGAGACTTGGGAGATTTAG 58.201 41.667 0.00 0.00 0.00 1.85
3295 9088 4.826274 TGTGAGACTTGGGAGATTTAGG 57.174 45.455 0.00 0.00 0.00 2.69
3296 9089 3.519510 TGTGAGACTTGGGAGATTTAGGG 59.480 47.826 0.00 0.00 0.00 3.53
3297 9090 2.505819 TGAGACTTGGGAGATTTAGGGC 59.494 50.000 0.00 0.00 0.00 5.19
3298 9091 2.505819 GAGACTTGGGAGATTTAGGGCA 59.494 50.000 0.00 0.00 0.00 5.36
3299 9092 3.126453 AGACTTGGGAGATTTAGGGCAT 58.874 45.455 0.00 0.00 0.00 4.40
3300 9093 3.117738 AGACTTGGGAGATTTAGGGCATG 60.118 47.826 0.00 0.00 0.00 4.06
3301 9094 2.582636 ACTTGGGAGATTTAGGGCATGT 59.417 45.455 0.00 0.00 0.00 3.21
3302 9095 3.011708 ACTTGGGAGATTTAGGGCATGTT 59.988 43.478 0.00 0.00 0.00 2.71
3303 9096 3.756082 TGGGAGATTTAGGGCATGTTT 57.244 42.857 0.00 0.00 0.00 2.83
3304 9097 3.364549 TGGGAGATTTAGGGCATGTTTG 58.635 45.455 0.00 0.00 0.00 2.93
3305 9098 2.695147 GGGAGATTTAGGGCATGTTTGG 59.305 50.000 0.00 0.00 0.00 3.28
3306 9099 3.365472 GGAGATTTAGGGCATGTTTGGT 58.635 45.455 0.00 0.00 0.00 3.67
3307 9100 4.532834 GGAGATTTAGGGCATGTTTGGTA 58.467 43.478 0.00 0.00 0.00 3.25
3308 9101 4.338400 GGAGATTTAGGGCATGTTTGGTAC 59.662 45.833 0.00 0.00 0.00 3.34
3309 9102 4.929479 AGATTTAGGGCATGTTTGGTACA 58.071 39.130 0.00 0.00 41.97 2.90
3310 9103 4.705023 AGATTTAGGGCATGTTTGGTACAC 59.295 41.667 0.00 0.00 40.19 2.90
3311 9104 2.500392 TAGGGCATGTTTGGTACACC 57.500 50.000 0.00 0.00 40.19 4.16
3312 9105 0.480690 AGGGCATGTTTGGTACACCA 59.519 50.000 0.00 0.00 45.94 4.17
3331 9124 3.112709 GCGTGGAGCGAGGTTGAC 61.113 66.667 0.00 0.00 44.77 3.18
3332 9125 2.338620 CGTGGAGCGAGGTTGACA 59.661 61.111 0.00 0.00 44.77 3.58
3333 9126 1.734477 CGTGGAGCGAGGTTGACAG 60.734 63.158 0.00 0.00 44.77 3.51
3334 9127 1.666011 GTGGAGCGAGGTTGACAGA 59.334 57.895 0.00 0.00 0.00 3.41
3335 9128 0.389166 GTGGAGCGAGGTTGACAGAG 60.389 60.000 0.00 0.00 0.00 3.35
3363 9156 2.660064 GGTGGAGCGACCCTCATGT 61.660 63.158 0.00 0.00 42.62 3.21
3364 9157 1.153549 GTGGAGCGACCCTCATGTC 60.154 63.158 0.00 0.00 42.62 3.06
3400 9197 6.151144 GGCTGACATTTGGTGAAATTACTAGT 59.849 38.462 0.00 0.00 28.65 2.57
3401 9198 7.335924 GGCTGACATTTGGTGAAATTACTAGTA 59.664 37.037 0.00 0.00 28.65 1.82
3402 9199 8.391106 GCTGACATTTGGTGAAATTACTAGTAG 58.609 37.037 2.23 0.00 28.65 2.57
3473 9270 4.043750 AGTGTCACAACAATTTCATTGCG 58.956 39.130 5.62 0.00 43.98 4.85
3475 9272 2.793790 GTCACAACAATTTCATTGCGCA 59.206 40.909 5.66 5.66 43.98 6.09
3510 9307 0.608130 GCTTCCCCATTGAACAACCC 59.392 55.000 0.00 0.00 0.00 4.11
3512 9309 2.608623 CTTCCCCATTGAACAACCCTT 58.391 47.619 0.00 0.00 0.00 3.95
3514 9311 3.905493 TCCCCATTGAACAACCCTTAA 57.095 42.857 0.00 0.00 0.00 1.85
3515 9312 3.502356 TCCCCATTGAACAACCCTTAAC 58.498 45.455 0.00 0.00 0.00 2.01
3516 9313 3.141272 TCCCCATTGAACAACCCTTAACT 59.859 43.478 0.00 0.00 0.00 2.24
3524 9321 4.263594 TGAACAACCCTTAACTCCCCATAC 60.264 45.833 0.00 0.00 0.00 2.39
3526 9323 2.578940 CAACCCTTAACTCCCCATACCA 59.421 50.000 0.00 0.00 0.00 3.25
3534 9331 6.320418 CCTTAACTCCCCATACCATAACAAAC 59.680 42.308 0.00 0.00 0.00 2.93
3590 9387 2.680805 GCACCATGCTCCTGTTAGCTAA 60.681 50.000 0.86 0.86 43.19 3.09
3639 9436 2.759839 TTTTTCCGAAAAGGGGGACT 57.240 45.000 6.41 0.00 41.52 3.85
3640 9437 2.281539 TTTTCCGAAAAGGGGGACTC 57.718 50.000 2.01 0.00 41.52 3.36
3641 9438 0.402887 TTTCCGAAAAGGGGGACTCC 59.597 55.000 0.00 0.00 41.52 3.85
3655 9452 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
3659 9456 4.161295 CCGGCCTCTGCATCGGAA 62.161 66.667 0.00 0.00 42.71 4.30
3660 9457 2.892425 CGGCCTCTGCATCGGAAC 60.892 66.667 0.00 0.00 40.13 3.62
3673 9470 3.330275 GGAACGATGCATACGGCC 58.670 61.111 18.34 15.38 43.89 6.13
3674 9471 1.522806 GGAACGATGCATACGGCCA 60.523 57.895 18.34 0.00 43.89 5.36
3675 9472 1.641677 GAACGATGCATACGGCCAC 59.358 57.895 18.34 6.95 43.89 5.01
3676 9473 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
3677 9474 0.463654 AACGATGCATACGGCCACAT 60.464 50.000 18.34 0.00 43.89 3.21
3678 9475 0.463654 ACGATGCATACGGCCACATT 60.464 50.000 18.34 0.00 43.89 2.71
3679 9476 0.662619 CGATGCATACGGCCACATTT 59.337 50.000 2.24 0.00 43.89 2.32
3680 9477 1.870402 CGATGCATACGGCCACATTTA 59.130 47.619 2.24 0.00 43.89 1.40
3681 9478 2.483877 CGATGCATACGGCCACATTTAT 59.516 45.455 2.24 0.00 43.89 1.40
3682 9479 3.682377 CGATGCATACGGCCACATTTATA 59.318 43.478 2.24 0.00 43.89 0.98
3683 9480 4.201714 CGATGCATACGGCCACATTTATAG 60.202 45.833 2.24 0.00 43.89 1.31
3684 9481 4.344359 TGCATACGGCCACATTTATAGA 57.656 40.909 2.24 0.00 43.89 1.98
3685 9482 4.905429 TGCATACGGCCACATTTATAGAT 58.095 39.130 2.24 0.00 43.89 1.98
3686 9483 6.043854 TGCATACGGCCACATTTATAGATA 57.956 37.500 2.24 0.00 43.89 1.98
3687 9484 6.468543 TGCATACGGCCACATTTATAGATAA 58.531 36.000 2.24 0.00 43.89 1.75
3688 9485 6.937465 TGCATACGGCCACATTTATAGATAAA 59.063 34.615 2.24 0.00 43.89 1.40
3689 9486 7.609918 TGCATACGGCCACATTTATAGATAAAT 59.390 33.333 2.24 2.29 41.37 1.40
3690 9487 9.104965 GCATACGGCCACATTTATAGATAAATA 57.895 33.333 2.24 0.00 37.41 1.40
3694 9491 9.787435 ACGGCCACATTTATAGATAAATAAAGA 57.213 29.630 2.24 0.00 40.07 2.52
3714 9511 7.602517 AAAGAGGTTCAACAAGATCTTATCG 57.397 36.000 7.86 0.00 0.00 2.92
3715 9512 6.287589 AGAGGTTCAACAAGATCTTATCGT 57.712 37.500 7.86 0.00 0.00 3.73
3716 9513 6.334202 AGAGGTTCAACAAGATCTTATCGTC 58.666 40.000 7.86 3.59 0.00 4.20
3717 9514 6.153680 AGAGGTTCAACAAGATCTTATCGTCT 59.846 38.462 7.86 5.69 0.00 4.18
3718 9515 6.102663 AGGTTCAACAAGATCTTATCGTCTG 58.897 40.000 7.86 0.00 0.00 3.51
3719 9516 6.071334 AGGTTCAACAAGATCTTATCGTCTGA 60.071 38.462 7.86 6.46 0.00 3.27
3720 9517 6.590292 GGTTCAACAAGATCTTATCGTCTGAA 59.410 38.462 7.86 11.15 0.00 3.02
3721 9518 7.117812 GGTTCAACAAGATCTTATCGTCTGAAA 59.882 37.037 7.86 0.00 28.66 2.69
3722 9519 8.495949 GTTCAACAAGATCTTATCGTCTGAAAA 58.504 33.333 7.86 0.00 28.66 2.29
3723 9520 8.018677 TCAACAAGATCTTATCGTCTGAAAAC 57.981 34.615 7.86 0.00 0.00 2.43
3724 9521 7.655732 TCAACAAGATCTTATCGTCTGAAAACA 59.344 33.333 7.86 0.00 0.00 2.83
3725 9522 7.588143 ACAAGATCTTATCGTCTGAAAACAG 57.412 36.000 7.86 0.00 0.00 3.16
3726 9523 7.378966 ACAAGATCTTATCGTCTGAAAACAGA 58.621 34.615 7.86 0.00 0.00 3.41
3727 9524 7.872993 ACAAGATCTTATCGTCTGAAAACAGAA 59.127 33.333 7.86 0.00 32.39 3.02
3728 9525 8.712363 CAAGATCTTATCGTCTGAAAACAGAAA 58.288 33.333 7.86 0.00 32.39 2.52
3729 9526 8.833231 AGATCTTATCGTCTGAAAACAGAAAA 57.167 30.769 0.00 0.00 32.39 2.29
3730 9527 9.273016 AGATCTTATCGTCTGAAAACAGAAAAA 57.727 29.630 0.00 0.00 32.39 1.94
3731 9528 9.319223 GATCTTATCGTCTGAAAACAGAAAAAC 57.681 33.333 0.00 0.00 32.39 2.43
3732 9529 7.342194 TCTTATCGTCTGAAAACAGAAAAACG 58.658 34.615 0.00 0.00 32.39 3.60
3733 9530 4.267357 TCGTCTGAAAACAGAAAAACGG 57.733 40.909 0.00 0.00 32.39 4.44
3734 9531 2.781646 CGTCTGAAAACAGAAAAACGGC 59.218 45.455 0.00 0.00 32.39 5.68
3735 9532 3.729462 CGTCTGAAAACAGAAAAACGGCA 60.729 43.478 0.00 0.00 32.39 5.69
3736 9533 4.170256 GTCTGAAAACAGAAAAACGGCAA 58.830 39.130 0.00 0.00 32.39 4.52
3737 9534 4.265320 GTCTGAAAACAGAAAAACGGCAAG 59.735 41.667 0.00 0.00 32.39 4.01
3738 9535 2.926838 TGAAAACAGAAAAACGGCAAGC 59.073 40.909 0.00 0.00 0.00 4.01
3739 9536 2.959507 AAACAGAAAAACGGCAAGCT 57.040 40.000 0.00 0.00 0.00 3.74
3740 9537 2.492019 AACAGAAAAACGGCAAGCTC 57.508 45.000 0.00 0.00 0.00 4.09
3741 9538 1.388547 ACAGAAAAACGGCAAGCTCA 58.611 45.000 0.00 0.00 0.00 4.26
3742 9539 1.065551 ACAGAAAAACGGCAAGCTCAC 59.934 47.619 0.00 0.00 0.00 3.51
3743 9540 1.065401 CAGAAAAACGGCAAGCTCACA 59.935 47.619 0.00 0.00 0.00 3.58
3744 9541 1.748493 AGAAAAACGGCAAGCTCACAA 59.252 42.857 0.00 0.00 0.00 3.33
3745 9542 2.165437 AGAAAAACGGCAAGCTCACAAA 59.835 40.909 0.00 0.00 0.00 2.83
3746 9543 2.208326 AAAACGGCAAGCTCACAAAG 57.792 45.000 0.00 0.00 0.00 2.77
3747 9544 1.388547 AAACGGCAAGCTCACAAAGA 58.611 45.000 0.00 0.00 0.00 2.52
3757 9554 0.040958 CTCACAAAGAGCCACAACGC 60.041 55.000 0.00 0.00 37.59 4.84
3758 9555 1.008538 CACAAAGAGCCACAACGCC 60.009 57.895 0.00 0.00 0.00 5.68
3759 9556 1.453015 ACAAAGAGCCACAACGCCA 60.453 52.632 0.00 0.00 0.00 5.69
3760 9557 1.034838 ACAAAGAGCCACAACGCCAA 61.035 50.000 0.00 0.00 0.00 4.52
3761 9558 0.102120 CAAAGAGCCACAACGCCAAA 59.898 50.000 0.00 0.00 0.00 3.28
3762 9559 0.820871 AAAGAGCCACAACGCCAAAA 59.179 45.000 0.00 0.00 0.00 2.44
3763 9560 0.820871 AAGAGCCACAACGCCAAAAA 59.179 45.000 0.00 0.00 0.00 1.94
3764 9561 0.102300 AGAGCCACAACGCCAAAAAC 59.898 50.000 0.00 0.00 0.00 2.43
3765 9562 0.179124 GAGCCACAACGCCAAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
3766 9563 0.247736 AGCCACAACGCCAAAAACAA 59.752 45.000 0.00 0.00 0.00 2.83
3767 9564 1.079503 GCCACAACGCCAAAAACAAA 58.920 45.000 0.00 0.00 0.00 2.83
3768 9565 1.464997 GCCACAACGCCAAAAACAAAA 59.535 42.857 0.00 0.00 0.00 2.44
3769 9566 2.475353 GCCACAACGCCAAAAACAAAAG 60.475 45.455 0.00 0.00 0.00 2.27
3770 9567 2.095053 CCACAACGCCAAAAACAAAAGG 59.905 45.455 0.00 0.00 0.00 3.11
3771 9568 1.735018 ACAACGCCAAAAACAAAAGGC 59.265 42.857 0.00 0.00 43.61 4.35
3772 9569 1.063321 CAACGCCAAAAACAAAAGGCC 59.937 47.619 0.00 0.00 44.18 5.19
3773 9570 0.462937 ACGCCAAAAACAAAAGGCCC 60.463 50.000 0.00 0.00 44.18 5.80
3774 9571 0.462759 CGCCAAAAACAAAAGGCCCA 60.463 50.000 0.00 0.00 44.18 5.36
3775 9572 1.756430 GCCAAAAACAAAAGGCCCAA 58.244 45.000 0.00 0.00 41.25 4.12
3776 9573 2.095461 GCCAAAAACAAAAGGCCCAAA 58.905 42.857 0.00 0.00 41.25 3.28
3777 9574 2.493675 GCCAAAAACAAAAGGCCCAAAA 59.506 40.909 0.00 0.00 41.25 2.44
3778 9575 3.428725 GCCAAAAACAAAAGGCCCAAAAG 60.429 43.478 0.00 0.00 41.25 2.27
3779 9576 3.428725 CCAAAAACAAAAGGCCCAAAAGC 60.429 43.478 0.00 0.00 0.00 3.51
3787 9584 2.028925 GCCCAAAAGCCACAACCG 59.971 61.111 0.00 0.00 0.00 4.44
3788 9585 2.733945 CCCAAAAGCCACAACCGG 59.266 61.111 0.00 0.00 0.00 5.28
3796 9593 3.222855 CCACAACCGGCTGCCAAA 61.223 61.111 20.29 0.00 0.00 3.28
3797 9594 2.790791 CCACAACCGGCTGCCAAAA 61.791 57.895 20.29 0.00 0.00 2.44
3798 9595 1.591327 CACAACCGGCTGCCAAAAC 60.591 57.895 20.29 0.00 0.00 2.43
3799 9596 2.055042 ACAACCGGCTGCCAAAACA 61.055 52.632 20.29 0.00 0.00 2.83
3800 9597 1.142748 CAACCGGCTGCCAAAACAA 59.857 52.632 20.29 0.00 0.00 2.83
3801 9598 0.460987 CAACCGGCTGCCAAAACAAA 60.461 50.000 20.29 0.00 0.00 2.83
3802 9599 0.179086 AACCGGCTGCCAAAACAAAG 60.179 50.000 20.29 0.00 0.00 2.77
3803 9600 1.040339 ACCGGCTGCCAAAACAAAGA 61.040 50.000 20.29 0.00 0.00 2.52
3804 9601 0.318120 CCGGCTGCCAAAACAAAGAT 59.682 50.000 20.29 0.00 0.00 2.40
3805 9602 1.543802 CCGGCTGCCAAAACAAAGATA 59.456 47.619 20.29 0.00 0.00 1.98
3806 9603 2.415893 CCGGCTGCCAAAACAAAGATAG 60.416 50.000 20.29 0.00 0.00 2.08
3807 9604 2.415893 CGGCTGCCAAAACAAAGATAGG 60.416 50.000 20.29 0.00 0.00 2.57
3808 9605 2.562738 GGCTGCCAAAACAAAGATAGGT 59.437 45.455 15.17 0.00 0.00 3.08
3809 9606 3.761752 GGCTGCCAAAACAAAGATAGGTA 59.238 43.478 15.17 0.00 0.00 3.08
3810 9607 4.219725 GGCTGCCAAAACAAAGATAGGTAA 59.780 41.667 15.17 0.00 0.00 2.85
3811 9608 5.279256 GGCTGCCAAAACAAAGATAGGTAAA 60.279 40.000 15.17 0.00 0.00 2.01
3812 9609 5.633601 GCTGCCAAAACAAAGATAGGTAAAC 59.366 40.000 0.00 0.00 0.00 2.01
3813 9610 6.516693 GCTGCCAAAACAAAGATAGGTAAACT 60.517 38.462 0.00 0.00 0.00 2.66
3814 9611 7.308951 GCTGCCAAAACAAAGATAGGTAAACTA 60.309 37.037 0.00 0.00 35.80 2.24
3815 9612 8.466617 TGCCAAAACAAAGATAGGTAAACTAA 57.533 30.769 0.00 0.00 34.79 2.24
3816 9613 9.084533 TGCCAAAACAAAGATAGGTAAACTAAT 57.915 29.630 0.00 0.00 34.79 1.73
3817 9614 9.569167 GCCAAAACAAAGATAGGTAAACTAATC 57.431 33.333 0.00 0.00 34.79 1.75
3818 9615 9.769093 CCAAAACAAAGATAGGTAAACTAATCG 57.231 33.333 0.00 0.00 34.79 3.34
3819 9616 9.274065 CAAAACAAAGATAGGTAAACTAATCGC 57.726 33.333 0.00 0.00 34.79 4.58
3820 9617 7.549615 AACAAAGATAGGTAAACTAATCGCC 57.450 36.000 0.00 0.00 34.79 5.54
3821 9618 6.885922 ACAAAGATAGGTAAACTAATCGCCT 58.114 36.000 0.00 0.00 34.79 5.52
3822 9619 8.015185 ACAAAGATAGGTAAACTAATCGCCTA 57.985 34.615 0.00 0.00 34.79 3.93
3823 9620 8.648693 ACAAAGATAGGTAAACTAATCGCCTAT 58.351 33.333 0.00 0.00 43.06 2.57
3826 9623 7.407393 GATAGGTAAACTAATCGCCTATCCT 57.593 40.000 14.62 0.00 46.08 3.24
3827 9624 5.470047 AGGTAAACTAATCGCCTATCCTG 57.530 43.478 0.00 0.00 0.00 3.86
3828 9625 4.900054 AGGTAAACTAATCGCCTATCCTGT 59.100 41.667 0.00 0.00 0.00 4.00
3829 9626 5.365895 AGGTAAACTAATCGCCTATCCTGTT 59.634 40.000 0.00 0.00 0.00 3.16
3830 9627 6.552350 AGGTAAACTAATCGCCTATCCTGTTA 59.448 38.462 0.00 0.00 0.00 2.41
3831 9628 6.644181 GGTAAACTAATCGCCTATCCTGTTAC 59.356 42.308 0.00 0.00 0.00 2.50
3832 9629 5.864418 AACTAATCGCCTATCCTGTTACA 57.136 39.130 0.00 0.00 0.00 2.41
3833 9630 6.420913 AACTAATCGCCTATCCTGTTACAT 57.579 37.500 0.00 0.00 0.00 2.29
3834 9631 5.784177 ACTAATCGCCTATCCTGTTACATG 58.216 41.667 0.00 0.00 0.00 3.21
3835 9632 4.955811 AATCGCCTATCCTGTTACATGA 57.044 40.909 0.00 0.00 0.00 3.07
3836 9633 3.728076 TCGCCTATCCTGTTACATGAC 57.272 47.619 0.00 0.00 0.00 3.06
3837 9634 2.364324 TCGCCTATCCTGTTACATGACC 59.636 50.000 0.00 0.00 0.00 4.02
3838 9635 2.755650 GCCTATCCTGTTACATGACCG 58.244 52.381 0.00 0.00 0.00 4.79
3839 9636 2.755650 CCTATCCTGTTACATGACCGC 58.244 52.381 0.00 0.00 0.00 5.68
3840 9637 2.548067 CCTATCCTGTTACATGACCGCC 60.548 54.545 0.00 0.00 0.00 6.13
3841 9638 0.908910 ATCCTGTTACATGACCGCCA 59.091 50.000 0.00 0.00 0.00 5.69
3842 9639 0.908910 TCCTGTTACATGACCGCCAT 59.091 50.000 0.00 0.00 35.44 4.40
3843 9640 1.134521 TCCTGTTACATGACCGCCATC 60.135 52.381 0.00 0.00 31.94 3.51
3844 9641 1.299541 CTGTTACATGACCGCCATCC 58.700 55.000 0.00 0.00 31.94 3.51
3845 9642 0.615850 TGTTACATGACCGCCATCCA 59.384 50.000 0.00 0.00 31.94 3.41
3846 9643 1.003696 TGTTACATGACCGCCATCCAA 59.996 47.619 0.00 0.00 31.94 3.53
3847 9644 2.088423 GTTACATGACCGCCATCCAAA 58.912 47.619 0.00 0.00 31.94 3.28
3848 9645 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
3849 9646 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
3850 9647 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
3851 9648 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
3853 9650 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
3854 9651 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
3855 9652 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
3856 9653 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
3857 9654 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
3858 9655 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
3859 9656 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
3860 9657 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
3861 9658 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
3862 9659 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
3863 9660 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
3864 9661 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
3865 9662 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
3866 9663 0.106149 ACCGGTTGAAGATATCCCGC 59.894 55.000 0.00 0.00 37.37 6.13
3867 9664 0.944311 CCGGTTGAAGATATCCCGCG 60.944 60.000 10.77 0.00 37.37 6.46
3868 9665 1.557443 CGGTTGAAGATATCCCGCGC 61.557 60.000 0.00 0.00 0.00 6.86
3869 9666 0.249911 GGTTGAAGATATCCCGCGCT 60.250 55.000 5.56 0.00 0.00 5.92
3870 9667 1.000506 GGTTGAAGATATCCCGCGCTA 59.999 52.381 5.56 0.00 0.00 4.26
3871 9668 2.059541 GTTGAAGATATCCCGCGCTAC 58.940 52.381 5.56 0.00 0.00 3.58
3872 9669 0.601558 TGAAGATATCCCGCGCTACC 59.398 55.000 5.56 0.00 0.00 3.18
3873 9670 0.601558 GAAGATATCCCGCGCTACCA 59.398 55.000 5.56 0.00 0.00 3.25
3874 9671 1.204941 GAAGATATCCCGCGCTACCAT 59.795 52.381 5.56 0.00 0.00 3.55
3875 9672 0.818296 AGATATCCCGCGCTACCATC 59.182 55.000 5.56 1.77 0.00 3.51
3876 9673 0.818296 GATATCCCGCGCTACCATCT 59.182 55.000 5.56 0.00 0.00 2.90
3877 9674 0.818296 ATATCCCGCGCTACCATCTC 59.182 55.000 5.56 0.00 0.00 2.75
3878 9675 1.248785 TATCCCGCGCTACCATCTCC 61.249 60.000 5.56 0.00 0.00 3.71
3879 9676 4.301027 CCCGCGCTACCATCTCCC 62.301 72.222 5.56 0.00 0.00 4.30
3880 9677 3.536917 CCGCGCTACCATCTCCCA 61.537 66.667 5.56 0.00 0.00 4.37
3881 9678 2.279517 CGCGCTACCATCTCCCAC 60.280 66.667 5.56 0.00 0.00 4.61
3882 9679 2.109181 GCGCTACCATCTCCCACC 59.891 66.667 0.00 0.00 0.00 4.61
3883 9680 2.417516 CGCTACCATCTCCCACCG 59.582 66.667 0.00 0.00 0.00 4.94
3884 9681 2.822399 GCTACCATCTCCCACCGG 59.178 66.667 0.00 0.00 0.00 5.28
3885 9682 1.760875 GCTACCATCTCCCACCGGA 60.761 63.158 9.46 0.00 36.45 5.14
3886 9683 2.029307 GCTACCATCTCCCACCGGAC 62.029 65.000 9.46 0.00 33.32 4.79
3887 9684 0.686441 CTACCATCTCCCACCGGACA 60.686 60.000 9.46 0.00 33.32 4.02
3888 9685 0.686441 TACCATCTCCCACCGGACAG 60.686 60.000 9.46 0.00 33.32 3.51
3889 9686 1.685765 CCATCTCCCACCGGACAGA 60.686 63.158 9.46 3.41 33.32 3.41
3890 9687 1.050988 CCATCTCCCACCGGACAGAT 61.051 60.000 9.46 5.91 33.32 2.90
3891 9688 0.390860 CATCTCCCACCGGACAGATC 59.609 60.000 9.46 0.00 33.32 2.75
3892 9689 0.760945 ATCTCCCACCGGACAGATCC 60.761 60.000 9.46 0.00 42.28 3.36
3893 9690 1.685765 CTCCCACCGGACAGATCCA 60.686 63.158 9.46 0.00 46.67 3.41
3894 9691 1.680522 CTCCCACCGGACAGATCCAG 61.681 65.000 9.46 0.00 46.67 3.86
3895 9692 1.990060 CCCACCGGACAGATCCAGT 60.990 63.158 9.46 0.00 46.67 4.00
3896 9693 0.686441 CCCACCGGACAGATCCAGTA 60.686 60.000 9.46 0.00 46.67 2.74
3897 9694 1.191535 CCACCGGACAGATCCAGTAA 58.808 55.000 9.46 0.00 46.67 2.24
3898 9695 1.134788 CCACCGGACAGATCCAGTAAC 60.135 57.143 9.46 0.00 46.67 2.50
3899 9696 1.134788 CACCGGACAGATCCAGTAACC 60.135 57.143 9.46 0.00 46.67 2.85
3900 9697 1.191535 CCGGACAGATCCAGTAACCA 58.808 55.000 0.00 0.00 46.67 3.67
3901 9698 1.553248 CCGGACAGATCCAGTAACCAA 59.447 52.381 0.00 0.00 46.67 3.67
3902 9699 2.027561 CCGGACAGATCCAGTAACCAAA 60.028 50.000 0.00 0.00 46.67 3.28
3903 9700 3.000727 CGGACAGATCCAGTAACCAAAC 58.999 50.000 0.00 0.00 46.67 2.93
3904 9701 3.000727 GGACAGATCCAGTAACCAAACG 58.999 50.000 0.00 0.00 45.47 3.60
3905 9702 2.415512 GACAGATCCAGTAACCAAACGC 59.584 50.000 0.00 0.00 0.00 4.84
3906 9703 2.038557 ACAGATCCAGTAACCAAACGCT 59.961 45.455 0.00 0.00 0.00 5.07
3907 9704 2.673368 CAGATCCAGTAACCAAACGCTC 59.327 50.000 0.00 0.00 0.00 5.03
3908 9705 2.007608 GATCCAGTAACCAAACGCTCC 58.992 52.381 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 2.466982 CCAGCCACTACATGCGCAG 61.467 63.158 18.32 10.85 0.00 5.18
104 105 3.204827 GGCCAGCCACTACATGCG 61.205 66.667 3.12 0.00 35.81 4.73
259 260 4.157246 ACTGGGTAGCATCGTATAATCCA 58.843 43.478 0.00 0.00 0.00 3.41
294 311 0.928451 GAAACGCTGTTCCACGCAAC 60.928 55.000 0.00 0.00 0.00 4.17
298 315 3.806316 AAATAGAAACGCTGTTCCACG 57.194 42.857 0.00 0.00 0.00 4.94
323 349 1.736032 GCTGCTGGTAACTGACGGTAG 60.736 57.143 0.00 0.00 37.83 3.18
327 353 0.319900 ACTGCTGCTGGTAACTGACG 60.320 55.000 11.29 0.00 37.83 4.35
363 389 7.221838 TCGGTTCATTTTTCTTGATGAAACAAC 59.778 33.333 12.80 0.00 45.71 3.32
378 404 0.725117 GATCGCCGTCGGTTCATTTT 59.275 50.000 13.94 0.00 36.13 1.82
437 3998 4.500116 GTCGGGTCTCGCAGCTCC 62.500 72.222 0.00 0.00 39.05 4.70
444 4005 1.703438 CTCTACACGGTCGGGTCTCG 61.703 65.000 0.09 0.00 40.90 4.04
492 4059 3.127895 GCTTGACTTCTCTCGCTCTAAGA 59.872 47.826 0.00 0.00 0.00 2.10
495 4062 1.398739 CGCTTGACTTCTCTCGCTCTA 59.601 52.381 0.00 0.00 0.00 2.43
496 4063 0.170116 CGCTTGACTTCTCTCGCTCT 59.830 55.000 0.00 0.00 0.00 4.09
497 4064 0.800300 CCGCTTGACTTCTCTCGCTC 60.800 60.000 0.00 0.00 0.00 5.03
498 4065 1.214062 CCGCTTGACTTCTCTCGCT 59.786 57.895 0.00 0.00 0.00 4.93
499 4066 1.080434 ACCGCTTGACTTCTCTCGC 60.080 57.895 0.00 0.00 0.00 5.03
500 4067 0.734253 CCACCGCTTGACTTCTCTCG 60.734 60.000 0.00 0.00 0.00 4.04
501 4068 0.390472 CCCACCGCTTGACTTCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
502 4069 1.674057 CCCACCGCTTGACTTCTCT 59.326 57.895 0.00 0.00 0.00 3.10
607 4190 2.829458 CGACGAGGGGAGAGGACC 60.829 72.222 0.00 0.00 0.00 4.46
628 4211 1.742411 GCGGGAAGATCGGAATTGACA 60.742 52.381 0.00 0.00 0.00 3.58
896 4486 1.133482 GGTTTATGGATGGTGGGAGGG 60.133 57.143 0.00 0.00 0.00 4.30
898 4488 2.509548 TGAGGTTTATGGATGGTGGGAG 59.490 50.000 0.00 0.00 0.00 4.30
899 4489 2.241176 GTGAGGTTTATGGATGGTGGGA 59.759 50.000 0.00 0.00 0.00 4.37
900 4490 2.242196 AGTGAGGTTTATGGATGGTGGG 59.758 50.000 0.00 0.00 0.00 4.61
901 4491 3.282021 CAGTGAGGTTTATGGATGGTGG 58.718 50.000 0.00 0.00 0.00 4.61
902 4492 2.684881 GCAGTGAGGTTTATGGATGGTG 59.315 50.000 0.00 0.00 0.00 4.17
903 4493 2.357154 GGCAGTGAGGTTTATGGATGGT 60.357 50.000 0.00 0.00 0.00 3.55
904 4494 2.301346 GGCAGTGAGGTTTATGGATGG 58.699 52.381 0.00 0.00 0.00 3.51
905 4495 2.947652 CTGGCAGTGAGGTTTATGGATG 59.052 50.000 6.28 0.00 0.00 3.51
906 4496 2.092212 CCTGGCAGTGAGGTTTATGGAT 60.092 50.000 14.43 0.00 0.00 3.41
907 4497 1.281867 CCTGGCAGTGAGGTTTATGGA 59.718 52.381 14.43 0.00 0.00 3.41
908 4498 1.755179 CCTGGCAGTGAGGTTTATGG 58.245 55.000 14.43 0.00 0.00 2.74
909 4499 1.098050 GCCTGGCAGTGAGGTTTATG 58.902 55.000 15.17 0.00 32.60 1.90
910 4500 0.034089 GGCCTGGCAGTGAGGTTTAT 60.034 55.000 22.05 0.00 32.60 1.40
911 4501 1.378762 GGCCTGGCAGTGAGGTTTA 59.621 57.895 22.05 0.00 32.60 2.01
912 4502 2.116125 GGCCTGGCAGTGAGGTTT 59.884 61.111 22.05 0.00 32.60 3.27
926 4751 3.855853 GGAGAAGAGAGCGGGGCC 61.856 72.222 0.00 0.00 0.00 5.80
938 4763 2.364317 CGCTGGGAGGGAGGAGAA 60.364 66.667 0.00 0.00 0.00 2.87
995 4820 1.209019 AGCAGAGCACCTTCATCGATT 59.791 47.619 0.00 0.00 0.00 3.34
1183 5008 2.885676 GCACCTGGCATATGTCGCG 61.886 63.158 0.00 0.00 43.97 5.87
1209 5034 1.003233 AAAGGGCGAGAGAGCAACC 60.003 57.895 0.00 0.00 39.27 3.77
1227 5052 1.146930 GATGGGCCAAGATCAGCGA 59.853 57.895 11.89 0.00 0.00 4.93
1232 5057 2.419159 GGCAAAAAGATGGGCCAAGATC 60.419 50.000 11.89 3.32 45.70 2.75
1288 5113 3.138798 GCCCTCCTGTCGTAGCGA 61.139 66.667 0.00 0.00 0.00 4.93
1289 5114 4.208686 GGCCCTCCTGTCGTAGCG 62.209 72.222 0.00 0.00 0.00 4.26
1374 5199 1.070786 GGAGACGAAGGTGTTGGCA 59.929 57.895 0.00 0.00 0.00 4.92
1458 5283 4.792804 GGCTCAGGCTCTGGCACC 62.793 72.222 13.40 0.00 40.87 5.01
1517 5342 3.567579 CTGGGGCACATCGGTGGTT 62.568 63.158 0.00 0.00 45.38 3.67
1521 5346 2.933287 TTCCTGGGGCACATCGGT 60.933 61.111 0.00 0.00 0.00 4.69
1532 5357 2.364317 TCGGGCTCCTCTTCCTGG 60.364 66.667 0.00 0.00 0.00 4.45
1566 5391 2.710902 CGCCCAGTCGATGTCTCCA 61.711 63.158 0.00 0.00 0.00 3.86
1608 5433 2.052104 CCAATCGGGCAAGTTCCCC 61.052 63.158 0.00 0.00 43.56 4.81
1746 5571 1.216178 CATGCTCCCGCCAAAAAGG 59.784 57.895 0.00 0.00 41.84 3.11
1791 5616 2.289444 GGAGTTGAACTCGGTGAATCCA 60.289 50.000 18.13 0.00 45.96 3.41
1794 5619 1.337823 CCGGAGTTGAACTCGGTGAAT 60.338 52.381 24.87 0.00 45.96 2.57
1964 5794 3.201708 AGAGAGGTTGCCAGAATTGCTAT 59.798 43.478 0.00 0.00 0.00 2.97
1965 5795 2.573462 AGAGAGGTTGCCAGAATTGCTA 59.427 45.455 0.00 0.00 0.00 3.49
1968 5892 3.063510 TGAGAGAGGTTGCCAGAATTG 57.936 47.619 0.00 0.00 0.00 2.32
2011 5938 1.809271 CGTTCCAGGATGCAGATCAGG 60.809 57.143 0.00 0.00 31.97 3.86
2034 5961 7.901029 TGATTAACCTGATCTGACTATGGATC 58.099 38.462 0.38 0.00 38.87 3.36
2091 6018 2.105134 TCACTTCAGGTTTTAAGCCGGA 59.895 45.455 5.05 0.00 0.00 5.14
2162 6089 6.209361 GCATAGATAGATCGTTCAGTCACAA 58.791 40.000 0.00 0.00 0.00 3.33
2209 6137 4.275810 TCGAAAAGGAAGGCTAGCTACTA 58.724 43.478 15.72 0.00 0.00 1.82
2210 6138 3.097614 TCGAAAAGGAAGGCTAGCTACT 58.902 45.455 15.72 0.44 0.00 2.57
2211 6139 3.521947 TCGAAAAGGAAGGCTAGCTAC 57.478 47.619 15.72 6.26 0.00 3.58
2212 6140 4.546829 TTTCGAAAAGGAAGGCTAGCTA 57.453 40.909 15.72 0.00 0.00 3.32
2213 6141 3.418684 TTTCGAAAAGGAAGGCTAGCT 57.581 42.857 15.72 0.00 0.00 3.32
2214 6142 4.499037 TTTTTCGAAAAGGAAGGCTAGC 57.501 40.909 21.53 6.04 0.00 3.42
2233 6161 7.071321 AGTGGACAGGCTAGCTACTATATTTTT 59.929 37.037 15.72 0.00 0.00 1.94
2234 6162 6.555360 AGTGGACAGGCTAGCTACTATATTTT 59.445 38.462 15.72 0.00 0.00 1.82
2235 6163 6.015010 CAGTGGACAGGCTAGCTACTATATTT 60.015 42.308 15.72 0.00 0.00 1.40
2236 6164 5.478679 CAGTGGACAGGCTAGCTACTATATT 59.521 44.000 15.72 0.00 0.00 1.28
2237 6165 5.013547 CAGTGGACAGGCTAGCTACTATAT 58.986 45.833 15.72 0.00 0.00 0.86
2238 6166 4.141228 ACAGTGGACAGGCTAGCTACTATA 60.141 45.833 15.72 0.00 0.00 1.31
2239 6167 3.226777 CAGTGGACAGGCTAGCTACTAT 58.773 50.000 15.72 0.00 0.00 2.12
2621 6549 4.570663 CCTGATCGACCGACGGCC 62.571 72.222 15.39 0.46 42.82 6.13
2648 6576 2.688507 CACACGACCTGCAATCTAGTT 58.311 47.619 0.00 0.00 0.00 2.24
2670 6602 2.143122 CACGCTAGTTTCAGCTTCCAA 58.857 47.619 0.00 0.00 39.51 3.53
2756 6698 4.816392 TGCGGTATATGTATGTGGATCAC 58.184 43.478 0.00 0.00 34.56 3.06
2783 6725 0.972983 TCAGTCCCAGAGCTACTGCC 60.973 60.000 8.45 0.23 44.52 4.85
2834 6788 5.493133 AAACTCACAATTACAAGCAACGA 57.507 34.783 0.00 0.00 0.00 3.85
2900 6856 4.229876 GCACTCTCACTGTTTTTATTGCC 58.770 43.478 0.00 0.00 0.00 4.52
2901 6857 4.858935 TGCACTCTCACTGTTTTTATTGC 58.141 39.130 0.00 0.00 0.00 3.56
2902 6858 6.364165 CCATTGCACTCTCACTGTTTTTATTG 59.636 38.462 0.00 0.00 0.00 1.90
2939 6895 2.095466 GCGAAATCGTCCATTCCAAACA 60.095 45.455 4.59 0.00 42.22 2.83
2948 6904 2.813474 CCGCTGCGAAATCGTCCA 60.813 61.111 25.45 0.00 42.22 4.02
3015 6981 2.217393 GCGTTTACAGATCGAGCTGATG 59.783 50.000 35.32 19.66 37.47 3.07
3080 7056 4.410492 AGTCAGAACAATTAGCGCAAAG 57.590 40.909 11.47 2.32 0.00 2.77
3143 7119 4.535781 TGATCCAATCATAACAACCCCAG 58.464 43.478 0.00 0.00 33.59 4.45
3166 7142 6.013842 AGTTTTAACTTGCAAGCTACCATC 57.986 37.500 26.27 11.32 35.21 3.51
3257 9050 2.092968 TCACAAGTCACATCCCTATGCC 60.093 50.000 0.00 0.00 36.50 4.40
3258 9051 3.118629 TCTCACAAGTCACATCCCTATGC 60.119 47.826 0.00 0.00 36.50 3.14
3260 9053 4.357325 AGTCTCACAAGTCACATCCCTAT 58.643 43.478 0.00 0.00 0.00 2.57
3261 9054 3.779444 AGTCTCACAAGTCACATCCCTA 58.221 45.455 0.00 0.00 0.00 3.53
3262 9055 2.614259 AGTCTCACAAGTCACATCCCT 58.386 47.619 0.00 0.00 0.00 4.20
3263 9056 3.070018 CAAGTCTCACAAGTCACATCCC 58.930 50.000 0.00 0.00 0.00 3.85
3264 9057 3.070018 CCAAGTCTCACAAGTCACATCC 58.930 50.000 0.00 0.00 0.00 3.51
3265 9058 3.070018 CCCAAGTCTCACAAGTCACATC 58.930 50.000 0.00 0.00 0.00 3.06
3266 9059 2.705658 TCCCAAGTCTCACAAGTCACAT 59.294 45.455 0.00 0.00 0.00 3.21
3267 9060 2.103094 CTCCCAAGTCTCACAAGTCACA 59.897 50.000 0.00 0.00 0.00 3.58
3268 9061 2.365617 TCTCCCAAGTCTCACAAGTCAC 59.634 50.000 0.00 0.00 0.00 3.67
3269 9062 2.677914 TCTCCCAAGTCTCACAAGTCA 58.322 47.619 0.00 0.00 0.00 3.41
3270 9063 3.971245 ATCTCCCAAGTCTCACAAGTC 57.029 47.619 0.00 0.00 0.00 3.01
3271 9064 4.713792 AAATCTCCCAAGTCTCACAAGT 57.286 40.909 0.00 0.00 0.00 3.16
3272 9065 5.181748 CCTAAATCTCCCAAGTCTCACAAG 58.818 45.833 0.00 0.00 0.00 3.16
3273 9066 4.019321 CCCTAAATCTCCCAAGTCTCACAA 60.019 45.833 0.00 0.00 0.00 3.33
3274 9067 3.519510 CCCTAAATCTCCCAAGTCTCACA 59.480 47.826 0.00 0.00 0.00 3.58
3275 9068 3.682999 GCCCTAAATCTCCCAAGTCTCAC 60.683 52.174 0.00 0.00 0.00 3.51
3276 9069 2.505819 GCCCTAAATCTCCCAAGTCTCA 59.494 50.000 0.00 0.00 0.00 3.27
3277 9070 2.505819 TGCCCTAAATCTCCCAAGTCTC 59.494 50.000 0.00 0.00 0.00 3.36
3278 9071 2.562296 TGCCCTAAATCTCCCAAGTCT 58.438 47.619 0.00 0.00 0.00 3.24
3279 9072 3.217626 CATGCCCTAAATCTCCCAAGTC 58.782 50.000 0.00 0.00 0.00 3.01
3280 9073 2.582636 ACATGCCCTAAATCTCCCAAGT 59.417 45.455 0.00 0.00 0.00 3.16
3281 9074 3.303351 ACATGCCCTAAATCTCCCAAG 57.697 47.619 0.00 0.00 0.00 3.61
3282 9075 3.756082 AACATGCCCTAAATCTCCCAA 57.244 42.857 0.00 0.00 0.00 4.12
3283 9076 3.364549 CAAACATGCCCTAAATCTCCCA 58.635 45.455 0.00 0.00 0.00 4.37
3284 9077 2.695147 CCAAACATGCCCTAAATCTCCC 59.305 50.000 0.00 0.00 0.00 4.30
3285 9078 3.365472 ACCAAACATGCCCTAAATCTCC 58.635 45.455 0.00 0.00 0.00 3.71
3286 9079 4.947388 TGTACCAAACATGCCCTAAATCTC 59.053 41.667 0.00 0.00 31.43 2.75
3287 9080 4.705023 GTGTACCAAACATGCCCTAAATCT 59.295 41.667 0.00 0.00 41.10 2.40
3288 9081 4.142249 GGTGTACCAAACATGCCCTAAATC 60.142 45.833 0.00 0.00 41.10 2.17
3289 9082 3.767131 GGTGTACCAAACATGCCCTAAAT 59.233 43.478 0.00 0.00 41.10 1.40
3290 9083 3.158676 GGTGTACCAAACATGCCCTAAA 58.841 45.455 0.00 0.00 41.10 1.85
3291 9084 2.108425 TGGTGTACCAAACATGCCCTAA 59.892 45.455 0.24 0.00 44.35 2.69
3292 9085 1.705745 TGGTGTACCAAACATGCCCTA 59.294 47.619 0.24 0.00 44.35 3.53
3293 9086 0.480690 TGGTGTACCAAACATGCCCT 59.519 50.000 0.24 0.00 44.35 5.19
3294 9087 0.887933 CTGGTGTACCAAACATGCCC 59.112 55.000 5.12 0.00 46.97 5.36
3295 9088 0.887933 CCTGGTGTACCAAACATGCC 59.112 55.000 5.12 0.00 46.97 4.40
3296 9089 0.243636 GCCTGGTGTACCAAACATGC 59.756 55.000 5.12 0.28 46.97 4.06
3297 9090 0.521291 CGCCTGGTGTACCAAACATG 59.479 55.000 5.12 0.00 46.97 3.21
3298 9091 0.109723 ACGCCTGGTGTACCAAACAT 59.890 50.000 11.96 0.00 46.97 2.71
3299 9092 0.816018 CACGCCTGGTGTACCAAACA 60.816 55.000 13.36 0.00 46.97 2.83
3300 9093 1.512156 CCACGCCTGGTGTACCAAAC 61.512 60.000 13.36 0.00 46.97 2.93
3301 9094 1.228003 CCACGCCTGGTGTACCAAA 60.228 57.895 13.36 0.00 46.97 3.28
3302 9095 2.107041 CTCCACGCCTGGTGTACCAA 62.107 60.000 13.36 0.00 46.97 3.67
3303 9096 2.524640 TCCACGCCTGGTGTACCA 60.525 61.111 13.36 3.37 45.52 3.25
3304 9097 2.264794 CTCCACGCCTGGTGTACC 59.735 66.667 13.36 0.00 45.52 3.34
3305 9098 2.434359 GCTCCACGCCTGGTGTAC 60.434 66.667 13.36 0.00 45.52 2.90
3306 9099 4.063967 CGCTCCACGCCTGGTGTA 62.064 66.667 13.36 0.00 45.52 2.90
3311 9104 4.379243 AACCTCGCTCCACGCCTG 62.379 66.667 0.00 0.00 43.23 4.85
3312 9105 4.379243 CAACCTCGCTCCACGCCT 62.379 66.667 0.00 0.00 43.23 5.52
3313 9106 4.373116 TCAACCTCGCTCCACGCC 62.373 66.667 0.00 0.00 43.23 5.68
3314 9107 3.112709 GTCAACCTCGCTCCACGC 61.113 66.667 0.00 0.00 43.23 5.34
3315 9108 1.734477 CTGTCAACCTCGCTCCACG 60.734 63.158 0.00 0.00 45.62 4.94
3316 9109 0.389166 CTCTGTCAACCTCGCTCCAC 60.389 60.000 0.00 0.00 0.00 4.02
3317 9110 0.539669 TCTCTGTCAACCTCGCTCCA 60.540 55.000 0.00 0.00 0.00 3.86
3318 9111 0.603569 TTCTCTGTCAACCTCGCTCC 59.396 55.000 0.00 0.00 0.00 4.70
3319 9112 1.670380 GGTTCTCTGTCAACCTCGCTC 60.670 57.143 0.00 0.00 40.33 5.03
3320 9113 0.318762 GGTTCTCTGTCAACCTCGCT 59.681 55.000 0.00 0.00 40.33 4.93
3321 9114 0.033504 TGGTTCTCTGTCAACCTCGC 59.966 55.000 10.47 0.00 43.43 5.03
3322 9115 2.751166 ATGGTTCTCTGTCAACCTCG 57.249 50.000 10.47 0.00 43.43 4.63
3323 9116 3.526534 GCTATGGTTCTCTGTCAACCTC 58.473 50.000 10.47 0.00 43.43 3.85
3324 9117 2.093973 CGCTATGGTTCTCTGTCAACCT 60.094 50.000 10.47 2.12 43.43 3.50
3325 9118 2.271800 CGCTATGGTTCTCTGTCAACC 58.728 52.381 0.00 0.00 43.35 3.77
3326 9119 2.271800 CCGCTATGGTTCTCTGTCAAC 58.728 52.381 0.00 0.00 0.00 3.18
3327 9120 2.672961 CCGCTATGGTTCTCTGTCAA 57.327 50.000 0.00 0.00 0.00 3.18
3363 9156 0.105224 TGTCAGCCGAAAAAGGTCGA 59.895 50.000 0.00 0.00 43.86 4.20
3364 9157 1.156736 ATGTCAGCCGAAAAAGGTCG 58.843 50.000 0.00 0.00 40.77 4.79
3365 9158 3.308530 CAAATGTCAGCCGAAAAAGGTC 58.691 45.455 0.00 0.00 0.00 3.85
3400 9197 1.296056 GACCGCGCCTTTTGCTTCTA 61.296 55.000 0.00 0.00 38.05 2.10
3401 9198 2.594592 ACCGCGCCTTTTGCTTCT 60.595 55.556 0.00 0.00 38.05 2.85
3402 9199 2.126850 GACCGCGCCTTTTGCTTC 60.127 61.111 0.00 0.00 38.05 3.86
3475 9272 4.263025 GGGGAAGCAAAGGTTTGATGATTT 60.263 41.667 6.63 0.00 40.55 2.17
3510 9307 6.887545 TGTTTGTTATGGTATGGGGAGTTAAG 59.112 38.462 0.00 0.00 0.00 1.85
3512 9309 6.390048 TGTTTGTTATGGTATGGGGAGTTA 57.610 37.500 0.00 0.00 0.00 2.24
3514 9311 4.938575 TGTTTGTTATGGTATGGGGAGT 57.061 40.909 0.00 0.00 0.00 3.85
3515 9312 7.723616 TGAATATGTTTGTTATGGTATGGGGAG 59.276 37.037 0.00 0.00 0.00 4.30
3516 9313 7.504238 GTGAATATGTTTGTTATGGTATGGGGA 59.496 37.037 0.00 0.00 0.00 4.81
3524 9321 9.515020 GGTTGTATGTGAATATGTTTGTTATGG 57.485 33.333 0.00 0.00 0.00 2.74
3620 9417 2.589720 GAGTCCCCCTTTTCGGAAAAA 58.410 47.619 15.99 0.00 33.42 1.94
3621 9418 1.202964 GGAGTCCCCCTTTTCGGAAAA 60.203 52.381 14.64 14.64 33.16 2.29
3622 9419 0.402887 GGAGTCCCCCTTTTCGGAAA 59.597 55.000 0.00 0.00 33.16 3.13
3623 9420 2.072366 GGAGTCCCCCTTTTCGGAA 58.928 57.895 0.00 0.00 33.16 4.30
3624 9421 3.816054 GGAGTCCCCCTTTTCGGA 58.184 61.111 0.00 0.00 33.16 4.55
3638 9435 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
3642 9439 4.161295 TTCCGATGCAGAGGCCGG 62.161 66.667 0.00 0.00 43.53 6.13
3643 9440 2.892425 GTTCCGATGCAGAGGCCG 60.892 66.667 0.00 0.00 40.13 6.13
3644 9441 2.650813 ATCGTTCCGATGCAGAGGCC 62.651 60.000 0.00 0.00 45.24 5.19
3645 9442 1.227380 ATCGTTCCGATGCAGAGGC 60.227 57.895 5.43 0.00 45.24 4.70
3654 9451 1.590525 GCCGTATGCATCGTTCCGA 60.591 57.895 0.19 0.00 41.13 4.55
3655 9452 2.594962 GGCCGTATGCATCGTTCCG 61.595 63.158 0.19 0.00 43.89 4.30
3656 9453 1.522806 TGGCCGTATGCATCGTTCC 60.523 57.895 0.19 10.49 43.89 3.62
3657 9454 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
3658 9455 0.463654 ATGTGGCCGTATGCATCGTT 60.464 50.000 0.19 0.00 43.89 3.85
3659 9456 0.463654 AATGTGGCCGTATGCATCGT 60.464 50.000 0.19 0.00 43.89 3.73
3660 9457 0.662619 AAATGTGGCCGTATGCATCG 59.337 50.000 0.19 7.03 43.89 3.84
3661 9458 4.935205 TCTATAAATGTGGCCGTATGCATC 59.065 41.667 0.19 0.00 43.89 3.91
3662 9459 4.905429 TCTATAAATGTGGCCGTATGCAT 58.095 39.130 3.79 3.79 43.89 3.96
3663 9460 4.344359 TCTATAAATGTGGCCGTATGCA 57.656 40.909 0.00 0.00 43.89 3.96
3664 9461 6.978343 TTATCTATAAATGTGGCCGTATGC 57.022 37.500 0.00 0.00 40.16 3.14
3668 9465 9.787435 TCTTTATTTATCTATAAATGTGGCCGT 57.213 29.630 15.17 0.00 41.58 5.68
3688 9485 9.319143 CGATAAGATCTTGTTGAACCTCTTTAT 57.681 33.333 18.47 0.00 0.00 1.40
3689 9486 8.311836 ACGATAAGATCTTGTTGAACCTCTTTA 58.688 33.333 22.41 0.00 0.00 1.85
3690 9487 7.162082 ACGATAAGATCTTGTTGAACCTCTTT 58.838 34.615 22.41 0.00 0.00 2.52
3691 9488 6.702329 ACGATAAGATCTTGTTGAACCTCTT 58.298 36.000 22.41 0.00 0.00 2.85
3692 9489 6.153680 AGACGATAAGATCTTGTTGAACCTCT 59.846 38.462 22.41 13.20 0.00 3.69
3693 9490 6.254589 CAGACGATAAGATCTTGTTGAACCTC 59.745 42.308 22.41 11.49 0.00 3.85
3694 9491 6.071334 TCAGACGATAAGATCTTGTTGAACCT 60.071 38.462 22.41 13.95 0.00 3.50
3695 9492 6.100004 TCAGACGATAAGATCTTGTTGAACC 58.900 40.000 22.41 12.36 0.00 3.62
3696 9493 7.582435 TTCAGACGATAAGATCTTGTTGAAC 57.418 36.000 22.41 15.75 0.00 3.18
3697 9494 8.495949 GTTTTCAGACGATAAGATCTTGTTGAA 58.504 33.333 22.41 16.36 0.00 2.69
3698 9495 7.655732 TGTTTTCAGACGATAAGATCTTGTTGA 59.344 33.333 22.41 12.01 0.00 3.18
3699 9496 7.796838 TGTTTTCAGACGATAAGATCTTGTTG 58.203 34.615 18.47 17.01 0.00 3.33
3700 9497 7.962964 TGTTTTCAGACGATAAGATCTTGTT 57.037 32.000 18.47 5.35 0.00 2.83
3717 9514 2.926838 GCTTGCCGTTTTTCTGTTTTCA 59.073 40.909 0.00 0.00 0.00 2.69
3718 9515 3.186909 AGCTTGCCGTTTTTCTGTTTTC 58.813 40.909 0.00 0.00 0.00 2.29
3719 9516 3.186909 GAGCTTGCCGTTTTTCTGTTTT 58.813 40.909 0.00 0.00 0.00 2.43
3720 9517 2.165437 TGAGCTTGCCGTTTTTCTGTTT 59.835 40.909 0.00 0.00 0.00 2.83
3721 9518 1.748493 TGAGCTTGCCGTTTTTCTGTT 59.252 42.857 0.00 0.00 0.00 3.16
3722 9519 1.065551 GTGAGCTTGCCGTTTTTCTGT 59.934 47.619 0.00 0.00 0.00 3.41
3723 9520 1.065401 TGTGAGCTTGCCGTTTTTCTG 59.935 47.619 0.00 0.00 0.00 3.02
3724 9521 1.388547 TGTGAGCTTGCCGTTTTTCT 58.611 45.000 0.00 0.00 0.00 2.52
3725 9522 2.202295 TTGTGAGCTTGCCGTTTTTC 57.798 45.000 0.00 0.00 0.00 2.29
3726 9523 2.165437 TCTTTGTGAGCTTGCCGTTTTT 59.835 40.909 0.00 0.00 0.00 1.94
3727 9524 1.748493 TCTTTGTGAGCTTGCCGTTTT 59.252 42.857 0.00 0.00 0.00 2.43
3728 9525 1.334869 CTCTTTGTGAGCTTGCCGTTT 59.665 47.619 0.00 0.00 35.84 3.60
3729 9526 0.947244 CTCTTTGTGAGCTTGCCGTT 59.053 50.000 0.00 0.00 35.84 4.44
3730 9527 2.621763 CTCTTTGTGAGCTTGCCGT 58.378 52.632 0.00 0.00 35.84 5.68
3738 9535 0.040958 GCGTTGTGGCTCTTTGTGAG 60.041 55.000 0.00 0.00 45.33 3.51
3739 9536 1.444119 GGCGTTGTGGCTCTTTGTGA 61.444 55.000 0.00 0.00 40.72 3.58
3740 9537 1.008538 GGCGTTGTGGCTCTTTGTG 60.009 57.895 0.00 0.00 40.72 3.33
3741 9538 1.034838 TTGGCGTTGTGGCTCTTTGT 61.035 50.000 0.00 0.00 45.14 2.83
3742 9539 0.102120 TTTGGCGTTGTGGCTCTTTG 59.898 50.000 0.00 0.00 45.14 2.77
3743 9540 0.820871 TTTTGGCGTTGTGGCTCTTT 59.179 45.000 0.00 0.00 45.14 2.52
3744 9541 0.820871 TTTTTGGCGTTGTGGCTCTT 59.179 45.000 0.00 0.00 45.14 2.85
3745 9542 0.102300 GTTTTTGGCGTTGTGGCTCT 59.898 50.000 0.00 0.00 45.14 4.09
3746 9543 0.179124 TGTTTTTGGCGTTGTGGCTC 60.179 50.000 0.00 0.00 45.14 4.70
3747 9544 0.247736 TTGTTTTTGGCGTTGTGGCT 59.752 45.000 0.00 0.00 45.14 4.75
3748 9545 1.079503 TTTGTTTTTGGCGTTGTGGC 58.920 45.000 0.00 0.00 45.12 5.01
3749 9546 2.095053 CCTTTTGTTTTTGGCGTTGTGG 59.905 45.455 0.00 0.00 0.00 4.17
3750 9547 2.475353 GCCTTTTGTTTTTGGCGTTGTG 60.475 45.455 0.00 0.00 35.79 3.33
3751 9548 1.735018 GCCTTTTGTTTTTGGCGTTGT 59.265 42.857 0.00 0.00 35.79 3.32
3752 9549 1.063321 GGCCTTTTGTTTTTGGCGTTG 59.937 47.619 0.00 0.00 45.75 4.10
3753 9550 1.374560 GGCCTTTTGTTTTTGGCGTT 58.625 45.000 0.00 0.00 45.75 4.84
3754 9551 0.462937 GGGCCTTTTGTTTTTGGCGT 60.463 50.000 0.84 0.00 45.75 5.68
3755 9552 0.462759 TGGGCCTTTTGTTTTTGGCG 60.463 50.000 4.53 0.00 45.75 5.69
3756 9553 1.756430 TTGGGCCTTTTGTTTTTGGC 58.244 45.000 4.53 0.00 44.22 4.52
3757 9554 3.428725 GCTTTTGGGCCTTTTGTTTTTGG 60.429 43.478 4.53 0.00 0.00 3.28
3758 9555 3.768406 GCTTTTGGGCCTTTTGTTTTTG 58.232 40.909 4.53 0.00 0.00 2.44
3770 9567 2.028925 CGGTTGTGGCTTTTGGGC 59.971 61.111 0.00 0.00 41.27 5.36
3771 9568 2.733945 CCGGTTGTGGCTTTTGGG 59.266 61.111 0.00 0.00 0.00 4.12
3779 9576 2.790791 TTTTGGCAGCCGGTTGTGG 61.791 57.895 20.17 0.00 0.00 4.17
3780 9577 1.591327 GTTTTGGCAGCCGGTTGTG 60.591 57.895 20.17 8.15 0.00 3.33
3781 9578 1.608717 TTGTTTTGGCAGCCGGTTGT 61.609 50.000 20.17 0.00 0.00 3.32
3782 9579 0.460987 TTTGTTTTGGCAGCCGGTTG 60.461 50.000 14.85 14.85 0.00 3.77
3783 9580 0.179086 CTTTGTTTTGGCAGCCGGTT 60.179 50.000 7.03 0.00 0.00 4.44
3784 9581 1.040339 TCTTTGTTTTGGCAGCCGGT 61.040 50.000 7.03 0.00 0.00 5.28
3785 9582 0.318120 ATCTTTGTTTTGGCAGCCGG 59.682 50.000 7.03 0.00 0.00 6.13
3786 9583 2.415893 CCTATCTTTGTTTTGGCAGCCG 60.416 50.000 7.03 0.00 0.00 5.52
3787 9584 2.562738 ACCTATCTTTGTTTTGGCAGCC 59.437 45.455 3.66 3.66 0.00 4.85
3788 9585 3.942130 ACCTATCTTTGTTTTGGCAGC 57.058 42.857 0.00 0.00 0.00 5.25
3789 9586 6.981722 AGTTTACCTATCTTTGTTTTGGCAG 58.018 36.000 0.00 0.00 0.00 4.85
3790 9587 6.969993 AGTTTACCTATCTTTGTTTTGGCA 57.030 33.333 0.00 0.00 0.00 4.92
3791 9588 9.569167 GATTAGTTTACCTATCTTTGTTTTGGC 57.431 33.333 0.00 0.00 0.00 4.52
3792 9589 9.769093 CGATTAGTTTACCTATCTTTGTTTTGG 57.231 33.333 0.00 0.00 0.00 3.28
3793 9590 9.274065 GCGATTAGTTTACCTATCTTTGTTTTG 57.726 33.333 0.00 0.00 0.00 2.44
3794 9591 8.456471 GGCGATTAGTTTACCTATCTTTGTTTT 58.544 33.333 0.00 0.00 0.00 2.43
3795 9592 7.827729 AGGCGATTAGTTTACCTATCTTTGTTT 59.172 33.333 0.00 0.00 0.00 2.83
3796 9593 7.336396 AGGCGATTAGTTTACCTATCTTTGTT 58.664 34.615 0.00 0.00 0.00 2.83
3797 9594 6.885922 AGGCGATTAGTTTACCTATCTTTGT 58.114 36.000 0.00 0.00 0.00 2.83
3803 9600 6.724905 ACAGGATAGGCGATTAGTTTACCTAT 59.275 38.462 0.00 0.00 44.49 2.57
3804 9601 6.073314 ACAGGATAGGCGATTAGTTTACCTA 58.927 40.000 0.00 0.00 37.40 3.08
3805 9602 4.900054 ACAGGATAGGCGATTAGTTTACCT 59.100 41.667 0.00 0.00 34.42 3.08
3806 9603 5.211174 ACAGGATAGGCGATTAGTTTACC 57.789 43.478 0.00 0.00 0.00 2.85
3807 9604 7.205297 TGTAACAGGATAGGCGATTAGTTTAC 58.795 38.462 0.00 0.00 0.00 2.01
3808 9605 7.350744 TGTAACAGGATAGGCGATTAGTTTA 57.649 36.000 0.00 0.00 0.00 2.01
3809 9606 6.229936 TGTAACAGGATAGGCGATTAGTTT 57.770 37.500 0.00 0.00 0.00 2.66
3810 9607 5.864418 TGTAACAGGATAGGCGATTAGTT 57.136 39.130 0.00 0.00 0.00 2.24
3811 9608 5.538813 TCATGTAACAGGATAGGCGATTAGT 59.461 40.000 0.00 0.00 0.00 2.24
3812 9609 5.864474 GTCATGTAACAGGATAGGCGATTAG 59.136 44.000 0.00 0.00 0.00 1.73
3813 9610 5.279306 GGTCATGTAACAGGATAGGCGATTA 60.279 44.000 0.00 0.00 0.00 1.75
3814 9611 4.503296 GGTCATGTAACAGGATAGGCGATT 60.503 45.833 0.00 0.00 0.00 3.34
3815 9612 3.006967 GGTCATGTAACAGGATAGGCGAT 59.993 47.826 0.00 0.00 0.00 4.58
3816 9613 2.364324 GGTCATGTAACAGGATAGGCGA 59.636 50.000 0.00 0.00 0.00 5.54
3817 9614 2.755650 GGTCATGTAACAGGATAGGCG 58.244 52.381 0.00 0.00 0.00 5.52
3818 9615 2.755650 CGGTCATGTAACAGGATAGGC 58.244 52.381 0.00 0.00 0.00 3.93
3819 9616 2.548067 GGCGGTCATGTAACAGGATAGG 60.548 54.545 0.00 0.00 0.00 2.57
3820 9617 2.102420 TGGCGGTCATGTAACAGGATAG 59.898 50.000 0.00 0.00 0.00 2.08
3821 9618 2.112190 TGGCGGTCATGTAACAGGATA 58.888 47.619 0.00 0.00 0.00 2.59
3822 9619 0.908910 TGGCGGTCATGTAACAGGAT 59.091 50.000 0.00 0.00 0.00 3.24
3823 9620 0.908910 ATGGCGGTCATGTAACAGGA 59.091 50.000 0.00 0.00 34.22 3.86
3824 9621 1.299541 GATGGCGGTCATGTAACAGG 58.700 55.000 0.00 0.00 35.97 4.00
3825 9622 1.299541 GGATGGCGGTCATGTAACAG 58.700 55.000 0.00 0.00 35.97 3.16
3826 9623 0.615850 TGGATGGCGGTCATGTAACA 59.384 50.000 0.00 0.00 35.97 2.41
3827 9624 1.745232 TTGGATGGCGGTCATGTAAC 58.255 50.000 0.00 0.00 35.97 2.50
3828 9625 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
3829 9626 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
3830 9627 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
3831 9628 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
3832 9629 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
3833 9630 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
3834 9631 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
3835 9632 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
3836 9633 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
3837 9634 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
3838 9635 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
3839 9636 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
3840 9637 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
3841 9638 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
3842 9639 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
3843 9640 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
3844 9641 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
3845 9642 2.914059 CGGGATATCTTCAACCGGTTT 58.086 47.619 19.55 5.23 40.79 3.27
3846 9643 1.474498 GCGGGATATCTTCAACCGGTT 60.474 52.381 15.86 15.86 44.39 4.44
3847 9644 0.106149 GCGGGATATCTTCAACCGGT 59.894 55.000 16.06 0.00 44.39 5.28
3848 9645 0.944311 CGCGGGATATCTTCAACCGG 60.944 60.000 16.06 0.00 44.39 5.28
3849 9646 1.557443 GCGCGGGATATCTTCAACCG 61.557 60.000 8.83 11.64 46.78 4.44
3850 9647 0.249911 AGCGCGGGATATCTTCAACC 60.250 55.000 8.83 0.00 0.00 3.77
3851 9648 2.059541 GTAGCGCGGGATATCTTCAAC 58.940 52.381 8.83 0.00 0.00 3.18
3852 9649 1.000506 GGTAGCGCGGGATATCTTCAA 59.999 52.381 8.83 0.00 0.00 2.69
3853 9650 0.601558 GGTAGCGCGGGATATCTTCA 59.398 55.000 8.83 0.00 0.00 3.02
3854 9651 0.601558 TGGTAGCGCGGGATATCTTC 59.398 55.000 8.83 0.00 0.00 2.87
3855 9652 1.204941 GATGGTAGCGCGGGATATCTT 59.795 52.381 8.83 2.79 0.00 2.40
3856 9653 0.818296 GATGGTAGCGCGGGATATCT 59.182 55.000 8.83 0.00 0.00 1.98
3857 9654 0.818296 AGATGGTAGCGCGGGATATC 59.182 55.000 8.83 1.32 0.00 1.63
3858 9655 0.818296 GAGATGGTAGCGCGGGATAT 59.182 55.000 8.83 0.00 0.00 1.63
3859 9656 1.248785 GGAGATGGTAGCGCGGGATA 61.249 60.000 8.83 0.00 0.00 2.59
3860 9657 2.574955 GGAGATGGTAGCGCGGGAT 61.575 63.158 8.83 0.00 0.00 3.85
3861 9658 3.224324 GGAGATGGTAGCGCGGGA 61.224 66.667 8.83 0.00 0.00 5.14
3862 9659 4.301027 GGGAGATGGTAGCGCGGG 62.301 72.222 8.83 0.00 0.00 6.13
3863 9660 3.536917 TGGGAGATGGTAGCGCGG 61.537 66.667 8.83 0.00 0.00 6.46
3864 9661 2.279517 GTGGGAGATGGTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
3865 9662 2.109181 GGTGGGAGATGGTAGCGC 59.891 66.667 0.00 0.00 0.00 5.92
3866 9663 2.417516 CGGTGGGAGATGGTAGCG 59.582 66.667 0.00 0.00 0.00 4.26
3867 9664 1.760875 TCCGGTGGGAGATGGTAGC 60.761 63.158 0.00 0.00 37.43 3.58
3868 9665 0.686441 TGTCCGGTGGGAGATGGTAG 60.686 60.000 0.00 0.00 44.97 3.18
3869 9666 0.686441 CTGTCCGGTGGGAGATGGTA 60.686 60.000 0.00 0.00 44.97 3.25
3870 9667 1.990060 CTGTCCGGTGGGAGATGGT 60.990 63.158 0.00 0.00 44.97 3.55
3871 9668 1.050988 ATCTGTCCGGTGGGAGATGG 61.051 60.000 0.00 0.00 44.97 3.51
3872 9669 0.390860 GATCTGTCCGGTGGGAGATG 59.609 60.000 0.00 0.00 44.97 2.90
3873 9670 0.760945 GGATCTGTCCGGTGGGAGAT 60.761 60.000 0.00 4.16 44.97 2.75
3874 9671 1.381327 GGATCTGTCCGGTGGGAGA 60.381 63.158 0.00 0.00 44.97 3.71
3875 9672 3.221222 GGATCTGTCCGGTGGGAG 58.779 66.667 0.00 0.00 44.97 4.30
3883 9680 3.000727 CGTTTGGTTACTGGATCTGTCC 58.999 50.000 0.00 0.00 45.31 4.02
3884 9681 2.415512 GCGTTTGGTTACTGGATCTGTC 59.584 50.000 0.00 0.00 0.00 3.51
3885 9682 2.038557 AGCGTTTGGTTACTGGATCTGT 59.961 45.455 0.00 0.00 0.00 3.41
3886 9683 2.673368 GAGCGTTTGGTTACTGGATCTG 59.327 50.000 0.00 0.00 0.00 2.90
3887 9684 2.354805 GGAGCGTTTGGTTACTGGATCT 60.355 50.000 0.00 0.00 0.00 2.75
3888 9685 2.007608 GGAGCGTTTGGTTACTGGATC 58.992 52.381 0.00 0.00 0.00 3.36
3889 9686 2.109425 GGAGCGTTTGGTTACTGGAT 57.891 50.000 0.00 0.00 0.00 3.41
3890 9687 3.618171 GGAGCGTTTGGTTACTGGA 57.382 52.632 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.