Multiple sequence alignment - TraesCS3D01G139000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G139000 chr3D 100.000 4666 0 0 1 4666 98535443 98540108 0.000000e+00 8617.0
1 TraesCS3D01G139000 chr3B 92.635 1928 98 20 90 1985 148998119 149000034 0.000000e+00 2734.0
2 TraesCS3D01G139000 chr3B 90.308 1589 93 29 3115 4659 149000772 149002343 0.000000e+00 2025.0
3 TraesCS3D01G139000 chr3A 90.785 1324 92 18 635 1938 116100196 116101509 0.000000e+00 1742.0
4 TraesCS3D01G139000 chr3A 90.693 1053 54 17 2916 3942 116102153 116103187 0.000000e+00 1362.0
5 TraesCS3D01G139000 chr3A 86.792 371 25 8 288 648 116099823 116100179 4.380000e-105 392.0
6 TraesCS3D01G139000 chr3A 84.036 332 38 12 2195 2515 116101794 116102121 5.870000e-79 305.0
7 TraesCS3D01G139000 chr3A 86.076 237 28 2 2677 2908 63180775 63180539 2.790000e-62 250.0
8 TraesCS3D01G139000 chr7D 86.695 233 28 2 2685 2914 339118809 339118577 5.990000e-64 255.0
9 TraesCS3D01G139000 chr7D 93.023 43 3 0 4624 4666 473633648 473633690 3.900000e-06 63.9
10 TraesCS3D01G139000 chr5D 87.783 221 23 3 2692 2909 382871949 382871730 5.990000e-64 255.0
11 TraesCS3D01G139000 chr5D 97.500 40 1 0 4044 4083 376711012 376711051 8.380000e-08 69.4
12 TraesCS3D01G139000 chr1B 85.356 239 33 2 2673 2909 184773015 184773253 3.610000e-61 246.0
13 TraesCS3D01G139000 chr1B 85.532 235 29 3 2677 2908 640853243 640853011 1.680000e-59 241.0
14 TraesCS3D01G139000 chr1B 88.636 44 4 1 2041 2083 531389284 531389327 8.000000e-03 52.8
15 TraesCS3D01G139000 chr4D 84.677 248 30 6 2678 2919 51076101 51076346 1.680000e-59 241.0
16 TraesCS3D01G139000 chr4D 84.362 243 30 7 2672 2908 341525502 341525742 1.010000e-56 231.0
17 TraesCS3D01G139000 chr4B 83.871 248 33 6 2665 2908 423361548 423361792 3.630000e-56 230.0
18 TraesCS3D01G139000 chr4B 93.023 43 3 0 4624 4666 243412180 243412222 3.900000e-06 63.9
19 TraesCS3D01G139000 chr4B 93.023 43 3 0 4624 4666 546639408 546639366 3.900000e-06 63.9
20 TraesCS3D01G139000 chr5A 83.534 249 35 5 2671 2916 671163928 671164173 1.310000e-55 228.0
21 TraesCS3D01G139000 chr1A 86.598 97 11 2 1 95 126366899 126366995 6.390000e-19 106.0
22 TraesCS3D01G139000 chr1A 97.436 39 1 0 4624 4662 323959634 323959596 3.010000e-07 67.6
23 TraesCS3D01G139000 chr5B 87.719 57 7 0 38 94 271028669 271028725 3.010000e-07 67.6
24 TraesCS3D01G139000 chr2D 93.333 45 3 0 4618 4662 579296602 579296558 3.010000e-07 67.6
25 TraesCS3D01G139000 chr2B 95.122 41 2 0 4626 4666 169942921 169942961 1.080000e-06 65.8
26 TraesCS3D01G139000 chr1D 95.122 41 2 0 4624 4664 295124583 295124623 1.080000e-06 65.8
27 TraesCS3D01G139000 chr7B 93.023 43 3 0 4624 4666 716967415 716967373 3.900000e-06 63.9
28 TraesCS3D01G139000 chr4A 93.023 43 3 0 4624 4666 558430519 558430561 3.900000e-06 63.9
29 TraesCS3D01G139000 chr6D 100.000 28 0 0 38 65 456334535 456334562 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G139000 chr3D 98535443 98540108 4665 False 8617.00 8617 100.0000 1 4666 1 chr3D.!!$F1 4665
1 TraesCS3D01G139000 chr3B 148998119 149002343 4224 False 2379.50 2734 91.4715 90 4659 2 chr3B.!!$F1 4569
2 TraesCS3D01G139000 chr3A 116099823 116103187 3364 False 950.25 1742 88.0765 288 3942 4 chr3A.!!$F1 3654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.030638 GCTTGGTTGATGTTGTGCGT 59.969 50.000 0.00 0.00 0.00 5.24 F
45 46 0.234884 GTTGTGCGTTGGTACTCTGC 59.765 55.000 0.00 0.00 0.00 4.26 F
48 49 0.245539 GTGCGTTGGTACTCTGCCTA 59.754 55.000 0.00 0.00 0.00 3.93 F
146 147 0.391130 TCATACTTGACTGCCACCGC 60.391 55.000 0.00 0.00 0.00 5.68 F
167 168 0.960861 GGTCAGTTGGTTAGCCCAGC 60.961 60.000 0.00 0.00 46.31 4.85 F
282 283 1.367840 CTGGCTGGCCTCCGTATAC 59.632 63.158 13.05 0.00 36.94 1.47 F
399 400 1.464997 GTTGAACGGAATGGCTCTGTC 59.535 52.381 0.00 0.00 43.28 3.51 F
2209 2399 0.032017 AGAGACCCGGCCTCTACATT 60.032 55.000 19.21 0.23 39.07 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 1965 0.902984 AAAAATGGGGCGGAGGGAAC 60.903 55.000 0.00 0.00 0.00 3.62 R
1946 2014 1.075601 ACTTTGGCTCATCCTGGGAA 58.924 50.000 0.00 0.00 35.26 3.97 R
1955 2027 1.419762 TGGCTCAACTACTTTGGCTCA 59.580 47.619 0.00 0.00 35.69 4.26 R
2092 2166 1.469308 AGCAGTTCGAAGACCTCTACG 59.531 52.381 0.00 0.00 34.32 3.51 R
2093 2167 3.690628 AGTAGCAGTTCGAAGACCTCTAC 59.309 47.826 0.00 6.50 33.52 2.59 R
2185 2259 1.829096 GAGGCCGGGTCTCTACCTC 60.829 68.421 21.25 10.59 45.95 3.85 R
2370 2572 0.912487 TACTCGGGTGCCCCTCAAAT 60.912 55.000 0.00 0.00 42.67 2.32 R
3677 4097 0.798776 CAAGGGCGACACTCAATCAC 59.201 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.874849 ACTTTGTGTTTGTTCGCTTGG 58.125 42.857 0.00 0.00 0.00 3.61
21 22 2.230266 ACTTTGTGTTTGTTCGCTTGGT 59.770 40.909 0.00 0.00 0.00 3.67
22 23 3.249917 CTTTGTGTTTGTTCGCTTGGTT 58.750 40.909 0.00 0.00 0.00 3.67
23 24 2.270275 TGTGTTTGTTCGCTTGGTTG 57.730 45.000 0.00 0.00 0.00 3.77
24 25 1.813178 TGTGTTTGTTCGCTTGGTTGA 59.187 42.857 0.00 0.00 0.00 3.18
25 26 2.425312 TGTGTTTGTTCGCTTGGTTGAT 59.575 40.909 0.00 0.00 0.00 2.57
26 27 2.788786 GTGTTTGTTCGCTTGGTTGATG 59.211 45.455 0.00 0.00 0.00 3.07
27 28 2.425312 TGTTTGTTCGCTTGGTTGATGT 59.575 40.909 0.00 0.00 0.00 3.06
28 29 3.119316 TGTTTGTTCGCTTGGTTGATGTT 60.119 39.130 0.00 0.00 0.00 2.71
29 30 2.772568 TGTTCGCTTGGTTGATGTTG 57.227 45.000 0.00 0.00 0.00 3.33
30 31 2.020720 TGTTCGCTTGGTTGATGTTGT 58.979 42.857 0.00 0.00 0.00 3.32
31 32 2.223456 TGTTCGCTTGGTTGATGTTGTG 60.223 45.455 0.00 0.00 0.00 3.33
32 33 0.310543 TCGCTTGGTTGATGTTGTGC 59.689 50.000 0.00 0.00 0.00 4.57
33 34 0.998226 CGCTTGGTTGATGTTGTGCG 60.998 55.000 0.00 0.00 36.41 5.34
34 35 0.030638 GCTTGGTTGATGTTGTGCGT 59.969 50.000 0.00 0.00 0.00 5.24
35 36 1.535860 GCTTGGTTGATGTTGTGCGTT 60.536 47.619 0.00 0.00 0.00 4.84
36 37 2.118683 CTTGGTTGATGTTGTGCGTTG 58.881 47.619 0.00 0.00 0.00 4.10
37 38 0.383590 TGGTTGATGTTGTGCGTTGG 59.616 50.000 0.00 0.00 0.00 3.77
38 39 0.383949 GGTTGATGTTGTGCGTTGGT 59.616 50.000 0.00 0.00 0.00 3.67
39 40 1.604755 GGTTGATGTTGTGCGTTGGTA 59.395 47.619 0.00 0.00 0.00 3.25
40 41 2.603652 GGTTGATGTTGTGCGTTGGTAC 60.604 50.000 0.00 0.00 0.00 3.34
41 42 2.248280 TGATGTTGTGCGTTGGTACT 57.752 45.000 0.00 0.00 0.00 2.73
42 43 2.139917 TGATGTTGTGCGTTGGTACTC 58.860 47.619 0.00 0.00 0.00 2.59
43 44 2.224185 TGATGTTGTGCGTTGGTACTCT 60.224 45.455 0.00 0.00 0.00 3.24
44 45 1.577468 TGTTGTGCGTTGGTACTCTG 58.423 50.000 0.00 0.00 0.00 3.35
45 46 0.234884 GTTGTGCGTTGGTACTCTGC 59.765 55.000 0.00 0.00 0.00 4.26
46 47 0.882927 TTGTGCGTTGGTACTCTGCC 60.883 55.000 0.00 0.00 0.00 4.85
47 48 1.004918 GTGCGTTGGTACTCTGCCT 60.005 57.895 0.00 0.00 0.00 4.75
48 49 0.245539 GTGCGTTGGTACTCTGCCTA 59.754 55.000 0.00 0.00 0.00 3.93
49 50 0.530744 TGCGTTGGTACTCTGCCTAG 59.469 55.000 0.00 0.00 0.00 3.02
50 51 0.531200 GCGTTGGTACTCTGCCTAGT 59.469 55.000 0.00 0.00 0.00 2.57
51 52 1.736032 GCGTTGGTACTCTGCCTAGTG 60.736 57.143 0.00 0.00 0.00 2.74
52 53 1.135083 CGTTGGTACTCTGCCTAGTGG 60.135 57.143 0.00 0.00 0.00 4.00
74 75 9.174166 AGTGGCTTTATTTATAAAATCGAGTGT 57.826 29.630 1.21 0.00 32.39 3.55
87 88 9.877178 ATAAAATCGAGTGTATGTCTTTTCTCT 57.123 29.630 0.00 0.00 0.00 3.10
89 90 9.706691 AAAATCGAGTGTATGTCTTTTCTCTAA 57.293 29.630 0.00 0.00 0.00 2.10
90 91 9.706691 AAATCGAGTGTATGTCTTTTCTCTAAA 57.293 29.630 0.00 0.00 0.00 1.85
91 92 9.706691 AATCGAGTGTATGTCTTTTCTCTAAAA 57.293 29.630 0.00 0.00 33.58 1.52
92 93 9.706691 ATCGAGTGTATGTCTTTTCTCTAAAAA 57.293 29.630 0.00 0.00 34.26 1.94
115 116 4.019792 ACGCCATAATAGGATGCATTGA 57.980 40.909 0.00 0.00 0.00 2.57
116 117 4.005650 ACGCCATAATAGGATGCATTGAG 58.994 43.478 0.00 0.00 0.00 3.02
118 119 4.331992 CGCCATAATAGGATGCATTGAGAG 59.668 45.833 0.00 0.00 0.00 3.20
126 127 3.969976 AGGATGCATTGAGAGTAGCCTTA 59.030 43.478 0.00 0.00 33.62 2.69
128 129 4.934602 GGATGCATTGAGAGTAGCCTTATC 59.065 45.833 0.00 0.00 0.00 1.75
137 138 7.278461 TGAGAGTAGCCTTATCATACTTGAC 57.722 40.000 0.00 0.00 33.85 3.18
138 139 7.063593 TGAGAGTAGCCTTATCATACTTGACT 58.936 38.462 0.00 0.00 33.85 3.41
139 140 7.013750 TGAGAGTAGCCTTATCATACTTGACTG 59.986 40.741 0.00 0.00 33.85 3.51
140 141 5.848406 AGTAGCCTTATCATACTTGACTGC 58.152 41.667 0.00 0.00 33.85 4.40
141 142 4.078639 AGCCTTATCATACTTGACTGCC 57.921 45.455 0.00 0.00 33.85 4.85
142 143 3.455910 AGCCTTATCATACTTGACTGCCA 59.544 43.478 0.00 0.00 33.85 4.92
143 144 3.561725 GCCTTATCATACTTGACTGCCAC 59.438 47.826 0.00 0.00 33.85 5.01
146 147 0.391130 TCATACTTGACTGCCACCGC 60.391 55.000 0.00 0.00 0.00 5.68
165 166 1.373435 CGGTCAGTTGGTTAGCCCA 59.627 57.895 0.00 0.00 43.27 5.36
167 168 0.960861 GGTCAGTTGGTTAGCCCAGC 60.961 60.000 0.00 0.00 46.31 4.85
199 200 3.157680 CCCACCCTGGTTCGAGTT 58.842 61.111 0.00 0.00 35.17 3.01
214 215 2.046938 AGTTCCGACTCAGCCGAAA 58.953 52.632 0.00 0.00 0.00 3.46
266 267 1.822990 TGTCGTTAAGGGCTAGTCCTG 59.177 52.381 18.80 4.12 37.20 3.86
282 283 1.367840 CTGGCTGGCCTCCGTATAC 59.632 63.158 13.05 0.00 36.94 1.47
399 400 1.464997 GTTGAACGGAATGGCTCTGTC 59.535 52.381 0.00 0.00 43.28 3.51
540 552 1.725931 GCCGAACTCGCTGTTGAAATG 60.726 52.381 0.00 0.00 39.30 2.32
632 644 5.016831 GGTTCCATGGACCCATATTAATCC 58.983 45.833 22.86 0.00 34.91 3.01
693 735 3.185594 CGCGTCAGATAAAACAACTTGGA 59.814 43.478 0.00 0.00 0.00 3.53
724 766 5.997746 TGTCAGCAAAACTAGTTTATGCTCT 59.002 36.000 32.29 21.39 40.90 4.09
822 864 6.442513 AAATAGCCATTTCTTCCTTCTTCG 57.557 37.500 0.00 0.00 27.60 3.79
836 878 2.312722 TCTTCGTCCGAAACCAAACA 57.687 45.000 3.52 0.00 33.34 2.83
896 938 2.608090 GGCGACCTTTCTTGCTACATAC 59.392 50.000 0.00 0.00 0.00 2.39
903 945 5.128008 ACCTTTCTTGCTACATACTCCTCTC 59.872 44.000 0.00 0.00 0.00 3.20
904 946 5.127845 CCTTTCTTGCTACATACTCCTCTCA 59.872 44.000 0.00 0.00 0.00 3.27
905 947 6.183360 CCTTTCTTGCTACATACTCCTCTCAT 60.183 42.308 0.00 0.00 0.00 2.90
906 948 6.398234 TTCTTGCTACATACTCCTCTCATC 57.602 41.667 0.00 0.00 0.00 2.92
907 949 5.449553 TCTTGCTACATACTCCTCTCATCA 58.550 41.667 0.00 0.00 0.00 3.07
908 950 5.300539 TCTTGCTACATACTCCTCTCATCAC 59.699 44.000 0.00 0.00 0.00 3.06
957 1010 4.471386 ACTTCCACAGTCATATAGGTTGCT 59.529 41.667 0.00 0.00 0.00 3.91
992 1046 6.441924 TCTTTCTAGACCACCAGATCAAGAAT 59.558 38.462 0.00 0.00 0.00 2.40
995 1049 4.392921 AGACCACCAGATCAAGAATACG 57.607 45.455 0.00 0.00 0.00 3.06
1089 1143 5.621555 GCCGGTAGCAATCGATCTATCTTTA 60.622 44.000 1.90 0.00 42.97 1.85
1187 1245 6.921857 CGATTTCTCTTCGCTAATTTAGGGTA 59.078 38.462 17.14 9.28 39.50 3.69
1192 1250 6.017400 TCTTCGCTAATTTAGGGTATACCG 57.983 41.667 15.80 0.49 46.96 4.02
1303 1362 9.583765 GTAACTGGAATAATTTCTCGTCTTACT 57.416 33.333 0.00 0.00 32.16 2.24
1317 1376 6.365247 TCTCGTCTTACTATCAACAAAGTTGC 59.635 38.462 5.06 0.00 0.00 4.17
1532 1599 2.682136 TCCCACGGCCTCATCGAA 60.682 61.111 0.00 0.00 0.00 3.71
1646 1713 2.675423 CAGTCTCCGACGGGGTCA 60.675 66.667 14.78 0.00 37.67 4.02
1942 2010 8.608844 TTTAGAAACAAGGCAAGAAAACAAAA 57.391 26.923 0.00 0.00 0.00 2.44
1945 2013 5.861222 AACAAGGCAAGAAAACAAAACTG 57.139 34.783 0.00 0.00 0.00 3.16
1946 2014 4.893608 ACAAGGCAAGAAAACAAAACTGT 58.106 34.783 0.00 0.00 0.00 3.55
1947 2015 5.304778 ACAAGGCAAGAAAACAAAACTGTT 58.695 33.333 0.00 0.00 0.00 3.16
1949 2017 4.503910 AGGCAAGAAAACAAAACTGTTCC 58.496 39.130 0.00 0.00 0.00 3.62
1954 2026 4.349365 AGAAAACAAAACTGTTCCCAGGA 58.651 39.130 0.00 0.00 43.36 3.86
1955 2027 4.962362 AGAAAACAAAACTGTTCCCAGGAT 59.038 37.500 0.00 0.00 43.36 3.24
1974 2048 2.185004 TGAGCCAAAGTAGTTGAGCC 57.815 50.000 2.07 0.00 39.87 4.70
1989 2063 3.955650 TGAGCCAGTAACAACTACTCC 57.044 47.619 5.69 0.00 38.92 3.85
1990 2064 2.565834 TGAGCCAGTAACAACTACTCCC 59.434 50.000 5.69 0.00 38.92 4.30
1993 2067 2.093606 GCCAGTAACAACTACTCCCTCC 60.094 54.545 0.00 0.00 38.92 4.30
1996 2070 4.141914 CCAGTAACAACTACTCCCTCCATC 60.142 50.000 0.00 0.00 38.92 3.51
1997 2071 4.712337 CAGTAACAACTACTCCCTCCATCT 59.288 45.833 0.00 0.00 38.92 2.90
1999 2073 6.380274 CAGTAACAACTACTCCCTCCATCTAA 59.620 42.308 0.00 0.00 38.92 2.10
2000 2074 5.941555 AACAACTACTCCCTCCATCTAAG 57.058 43.478 0.00 0.00 0.00 2.18
2001 2075 4.949121 ACAACTACTCCCTCCATCTAAGT 58.051 43.478 0.00 0.00 0.00 2.24
2002 2076 5.342866 ACAACTACTCCCTCCATCTAAGTT 58.657 41.667 0.00 0.00 0.00 2.66
2003 2077 5.785940 ACAACTACTCCCTCCATCTAAGTTT 59.214 40.000 0.00 0.00 0.00 2.66
2005 2079 7.093421 ACAACTACTCCCTCCATCTAAGTTTAC 60.093 40.741 0.00 0.00 0.00 2.01
2006 2080 6.743788 ACTACTCCCTCCATCTAAGTTTACT 58.256 40.000 0.00 0.00 0.00 2.24
2007 2081 7.190501 ACTACTCCCTCCATCTAAGTTTACTT 58.809 38.462 0.29 0.29 39.85 2.24
2008 2082 8.342270 ACTACTCCCTCCATCTAAGTTTACTTA 58.658 37.037 2.63 2.63 37.40 2.24
2051 2125 8.556213 AAAACCTTAGTATTAAATCAGCGACA 57.444 30.769 0.00 0.00 0.00 4.35
2052 2126 7.535489 AACCTTAGTATTAAATCAGCGACAC 57.465 36.000 0.00 0.00 0.00 3.67
2053 2127 6.875076 ACCTTAGTATTAAATCAGCGACACT 58.125 36.000 0.00 0.00 0.00 3.55
2054 2128 7.328737 ACCTTAGTATTAAATCAGCGACACTT 58.671 34.615 0.00 0.00 0.00 3.16
2055 2129 8.472413 ACCTTAGTATTAAATCAGCGACACTTA 58.528 33.333 0.00 0.00 0.00 2.24
2056 2130 9.477484 CCTTAGTATTAAATCAGCGACACTTAT 57.523 33.333 0.00 0.00 0.00 1.73
2066 2140 8.492673 AATCAGCGACACTTATTTTAGAATGA 57.507 30.769 0.00 0.00 0.00 2.57
2067 2141 7.899178 TCAGCGACACTTATTTTAGAATGAA 57.101 32.000 0.00 0.00 0.00 2.57
2068 2142 8.492673 TCAGCGACACTTATTTTAGAATGAAT 57.507 30.769 0.00 0.00 0.00 2.57
2069 2143 9.594478 TCAGCGACACTTATTTTAGAATGAATA 57.406 29.630 0.00 0.00 0.00 1.75
2070 2144 9.855361 CAGCGACACTTATTTTAGAATGAATAG 57.145 33.333 0.00 0.00 0.00 1.73
2071 2145 9.817809 AGCGACACTTATTTTAGAATGAATAGA 57.182 29.630 0.00 0.00 0.00 1.98
2102 2176 8.749026 TTCTATAGTTTCATTCGTAGAGGTCT 57.251 34.615 0.00 0.00 38.43 3.85
2104 2178 8.838365 TCTATAGTTTCATTCGTAGAGGTCTTC 58.162 37.037 0.00 0.00 38.43 2.87
2110 2184 3.826236 TTCGTAGAGGTCTTCGAACTG 57.174 47.619 15.01 0.00 45.91 3.16
2117 2191 2.488545 GAGGTCTTCGAACTGCTACTCA 59.511 50.000 0.00 0.00 25.20 3.41
2162 2236 5.027293 ACCACAGTTACGTTTCTAAACCT 57.973 39.130 0.00 0.00 35.51 3.50
2164 2238 5.985530 ACCACAGTTACGTTTCTAAACCTAC 59.014 40.000 0.00 0.00 35.51 3.18
2165 2239 5.117592 CCACAGTTACGTTTCTAAACCTACG 59.882 44.000 0.00 0.00 39.71 3.51
2209 2399 0.032017 AGAGACCCGGCCTCTACATT 60.032 55.000 19.21 0.23 39.07 2.71
2249 2439 6.668541 ATCCTGTGATTTATTCAACGACTG 57.331 37.500 0.00 0.00 35.70 3.51
2252 2443 5.281693 TGTGATTTATTCAACGACTGCAG 57.718 39.130 13.48 13.48 35.70 4.41
2338 2540 5.716094 TCTGAAAAGATGCCAATCAATGTG 58.284 37.500 0.00 0.00 35.03 3.21
2382 2585 4.145052 CCCTAGAATAATTTGAGGGGCAC 58.855 47.826 5.07 0.00 42.85 5.01
2418 2704 9.739276 AATTACTGTGAGAATCTACAAAATCCA 57.261 29.630 0.00 0.00 34.92 3.41
2443 2729 4.320608 AAATTCTCGCAAGCCAAAAAGA 57.679 36.364 0.00 0.00 37.18 2.52
2455 2741 4.411013 AGCCAAAAAGAGCCTAAATGTCT 58.589 39.130 0.00 0.00 0.00 3.41
2457 2743 5.649831 AGCCAAAAAGAGCCTAAATGTCTAG 59.350 40.000 0.00 0.00 0.00 2.43
2467 2759 5.958987 AGCCTAAATGTCTAGGTAGTCTGTT 59.041 40.000 0.00 0.00 40.68 3.16
2472 2764 9.877178 CTAAATGTCTAGGTAGTCTGTTTTCAT 57.123 33.333 0.00 0.00 0.00 2.57
2487 2779 7.434897 GTCTGTTTTCATTTGCAATGTGTCTTA 59.565 33.333 0.00 0.00 0.00 2.10
2488 2780 7.648908 TCTGTTTTCATTTGCAATGTGTCTTAG 59.351 33.333 0.00 0.00 0.00 2.18
2489 2781 7.487484 TGTTTTCATTTGCAATGTGTCTTAGA 58.513 30.769 0.00 0.00 0.00 2.10
2490 2782 7.434897 TGTTTTCATTTGCAATGTGTCTTAGAC 59.565 33.333 5.27 5.27 0.00 2.59
2491 2783 6.882610 TTCATTTGCAATGTGTCTTAGACT 57.117 33.333 13.86 0.00 33.15 3.24
2492 2784 6.486253 TCATTTGCAATGTGTCTTAGACTC 57.514 37.500 13.86 10.51 33.15 3.36
2493 2785 5.997129 TCATTTGCAATGTGTCTTAGACTCA 59.003 36.000 17.61 17.61 39.71 3.41
2494 2786 6.656270 TCATTTGCAATGTGTCTTAGACTCAT 59.344 34.615 20.12 20.12 44.92 2.90
2495 2787 7.823799 TCATTTGCAATGTGTCTTAGACTCATA 59.176 33.333 24.23 12.73 43.11 2.15
2496 2788 7.601073 TTTGCAATGTGTCTTAGACTCATAG 57.399 36.000 24.23 9.48 43.11 2.23
2497 2789 6.286240 TGCAATGTGTCTTAGACTCATAGT 57.714 37.500 24.23 11.56 43.11 2.12
2498 2790 6.333416 TGCAATGTGTCTTAGACTCATAGTC 58.667 40.000 24.23 17.44 43.11 2.59
2537 2832 9.740239 TTTATTTTCTAGAATATACACGAGCGT 57.260 29.630 13.31 0.00 0.00 5.07
2552 2847 6.070846 CACGAGCGTGTATATCATATGTTG 57.929 41.667 14.36 0.00 40.91 3.33
2553 2848 5.856455 CACGAGCGTGTATATCATATGTTGA 59.144 40.000 14.36 0.00 40.91 3.18
2554 2849 6.528072 CACGAGCGTGTATATCATATGTTGAT 59.472 38.462 14.36 0.00 42.87 2.57
2555 2850 7.696453 CACGAGCGTGTATATCATATGTTGATA 59.304 37.037 14.36 0.00 43.76 2.15
2569 2864 9.573166 TCATATGTTGATAGGAAAATAAGGGTG 57.427 33.333 1.90 0.00 0.00 4.61
2570 2865 9.573166 CATATGTTGATAGGAAAATAAGGGTGA 57.427 33.333 0.00 0.00 0.00 4.02
2572 2867 7.938140 TGTTGATAGGAAAATAAGGGTGAAG 57.062 36.000 0.00 0.00 0.00 3.02
2573 2868 7.695055 TGTTGATAGGAAAATAAGGGTGAAGA 58.305 34.615 0.00 0.00 0.00 2.87
2574 2869 8.167392 TGTTGATAGGAAAATAAGGGTGAAGAA 58.833 33.333 0.00 0.00 0.00 2.52
2575 2870 9.020731 GTTGATAGGAAAATAAGGGTGAAGAAA 57.979 33.333 0.00 0.00 0.00 2.52
2576 2871 8.575649 TGATAGGAAAATAAGGGTGAAGAAAC 57.424 34.615 0.00 0.00 0.00 2.78
2577 2872 7.614192 TGATAGGAAAATAAGGGTGAAGAAACC 59.386 37.037 0.00 0.00 39.71 3.27
2585 2880 2.358322 GGTGAAGAAACCCTCAACCA 57.642 50.000 0.00 0.00 33.79 3.67
2586 2881 2.661718 GGTGAAGAAACCCTCAACCAA 58.338 47.619 0.00 0.00 33.79 3.67
2587 2882 2.623416 GGTGAAGAAACCCTCAACCAAG 59.377 50.000 0.00 0.00 33.79 3.61
2588 2883 2.623416 GTGAAGAAACCCTCAACCAAGG 59.377 50.000 0.00 0.00 36.08 3.61
2589 2884 2.243736 TGAAGAAACCCTCAACCAAGGT 59.756 45.455 0.00 0.00 34.34 3.50
2590 2885 3.296854 GAAGAAACCCTCAACCAAGGTT 58.703 45.455 0.00 0.00 45.79 3.50
2593 2888 2.543037 AACCCTCAACCAAGGTTTGT 57.457 45.000 0.79 0.00 41.07 2.83
2594 2889 3.673543 AACCCTCAACCAAGGTTTGTA 57.326 42.857 0.79 0.00 41.07 2.41
2595 2890 3.673543 ACCCTCAACCAAGGTTTGTAA 57.326 42.857 0.79 0.00 36.00 2.41
2596 2891 3.562182 ACCCTCAACCAAGGTTTGTAAG 58.438 45.455 0.79 0.00 36.00 2.34
2597 2892 3.203487 ACCCTCAACCAAGGTTTGTAAGA 59.797 43.478 0.79 0.00 36.00 2.10
2598 2893 4.211920 CCCTCAACCAAGGTTTGTAAGAA 58.788 43.478 0.79 0.00 36.00 2.52
2599 2894 4.037565 CCCTCAACCAAGGTTTGTAAGAAC 59.962 45.833 0.79 0.00 36.00 3.01
2605 2900 6.705216 ACCAAGGTTTGTAAGAACCCGGTT 62.705 45.833 1.22 1.22 46.16 4.44
2609 2904 4.858935 GGTTTGTAAGAACCCGGTTTTAC 58.141 43.478 18.73 18.73 42.63 2.01
2610 2905 4.580167 GGTTTGTAAGAACCCGGTTTTACT 59.420 41.667 22.35 9.34 42.63 2.24
2611 2906 5.762711 GGTTTGTAAGAACCCGGTTTTACTA 59.237 40.000 22.35 17.18 42.63 1.82
2612 2907 6.073058 GGTTTGTAAGAACCCGGTTTTACTAG 60.073 42.308 22.35 0.00 42.63 2.57
2613 2908 5.151297 TGTAAGAACCCGGTTTTACTAGG 57.849 43.478 22.35 0.00 0.00 3.02
2614 2909 2.775911 AGAACCCGGTTTTACTAGGC 57.224 50.000 3.77 0.00 0.00 3.93
2615 2910 2.263545 AGAACCCGGTTTTACTAGGCT 58.736 47.619 3.77 0.00 0.00 4.58
2616 2911 3.444029 AGAACCCGGTTTTACTAGGCTA 58.556 45.455 3.77 0.00 0.00 3.93
2617 2912 3.450096 AGAACCCGGTTTTACTAGGCTAG 59.550 47.826 19.83 19.83 0.00 3.42
2618 2913 2.825223 ACCCGGTTTTACTAGGCTAGT 58.175 47.619 28.60 28.60 42.68 2.57
2619 2914 3.981212 ACCCGGTTTTACTAGGCTAGTA 58.019 45.455 26.51 26.51 40.14 1.82
2620 2915 3.956848 ACCCGGTTTTACTAGGCTAGTAG 59.043 47.826 27.97 19.20 41.84 2.57
2621 2916 3.243670 CCCGGTTTTACTAGGCTAGTAGC 60.244 52.174 27.97 20.26 41.84 3.58
2642 2937 6.253946 AGCCTAGTAAGATGTATTGCCTTT 57.746 37.500 0.00 0.00 0.00 3.11
2643 2938 6.058183 AGCCTAGTAAGATGTATTGCCTTTG 58.942 40.000 0.00 0.00 0.00 2.77
2647 2942 6.759497 AGTAAGATGTATTGCCTTTGTTCC 57.241 37.500 0.00 0.00 0.00 3.62
2649 2944 5.649782 AAGATGTATTGCCTTTGTTCCAG 57.350 39.130 0.00 0.00 0.00 3.86
2657 2952 8.861086 TGTATTGCCTTTGTTCCAGTAAATAAA 58.139 29.630 0.00 0.00 0.00 1.40
2658 2953 9.353999 GTATTGCCTTTGTTCCAGTAAATAAAG 57.646 33.333 0.00 0.00 37.20 1.85
2659 2954 6.969993 TGCCTTTGTTCCAGTAAATAAAGT 57.030 33.333 0.00 0.00 36.29 2.66
2662 2957 5.856455 CCTTTGTTCCAGTAAATAAAGTGCG 59.144 40.000 0.00 0.00 36.29 5.34
2664 2959 3.120477 TGTTCCAGTAAATAAAGTGCGCG 60.120 43.478 0.00 0.00 0.00 6.86
2672 2967 6.196353 CAGTAAATAAAGTGCGCGCATTTAAT 59.804 34.615 36.65 29.32 0.00 1.40
2673 2968 6.750039 AGTAAATAAAGTGCGCGCATTTAATT 59.250 30.769 36.65 32.25 0.00 1.40
2675 2970 7.513190 AAATAAAGTGCGCGCATTTAATTTA 57.487 28.000 36.65 30.03 0.00 1.40
2676 2971 6.732181 ATAAAGTGCGCGCATTTAATTTAG 57.268 33.333 36.65 0.00 0.00 1.85
2677 2972 3.065019 AGTGCGCGCATTTAATTTAGG 57.935 42.857 38.62 0.00 0.00 2.69
2679 2974 2.781646 GTGCGCGCATTTAATTTAGGAC 59.218 45.455 38.62 15.62 0.00 3.85
2680 2975 2.223386 TGCGCGCATTTAATTTAGGACC 60.223 45.455 33.09 0.00 0.00 4.46
2681 2976 2.857104 GCGCGCATTTAATTTAGGACCC 60.857 50.000 29.10 0.00 0.00 4.46
2682 2977 2.616842 CGCGCATTTAATTTAGGACCCT 59.383 45.455 8.75 0.00 0.00 4.34
2683 2978 3.066203 CGCGCATTTAATTTAGGACCCTT 59.934 43.478 8.75 0.00 0.00 3.95
2684 2979 4.273969 CGCGCATTTAATTTAGGACCCTTA 59.726 41.667 8.75 0.00 0.00 2.69
2685 2980 5.048991 CGCGCATTTAATTTAGGACCCTTAT 60.049 40.000 8.75 0.00 0.00 1.73
2686 2981 6.148150 CGCGCATTTAATTTAGGACCCTTATA 59.852 38.462 8.75 0.00 0.00 0.98
2687 2982 7.308109 CGCGCATTTAATTTAGGACCCTTATAA 60.308 37.037 8.75 0.00 0.00 0.98
2688 2983 8.520351 GCGCATTTAATTTAGGACCCTTATAAT 58.480 33.333 0.30 0.00 0.00 1.28
2693 2988 9.577222 TTTAATTTAGGACCCTTATAATTCCCG 57.423 33.333 0.00 0.00 0.00 5.14
2694 2989 7.396906 AATTTAGGACCCTTATAATTCCCGA 57.603 36.000 0.00 0.00 0.00 5.14
2695 2990 6.828307 TTTAGGACCCTTATAATTCCCGAA 57.172 37.500 0.00 0.00 0.00 4.30
2696 2991 4.701651 AGGACCCTTATAATTCCCGAAC 57.298 45.455 4.89 0.00 0.00 3.95
2697 2992 3.070590 AGGACCCTTATAATTCCCGAACG 59.929 47.826 4.89 0.00 0.00 3.95
2698 2993 3.181462 GGACCCTTATAATTCCCGAACGT 60.181 47.826 0.00 0.00 0.00 3.99
2699 2994 4.445453 GACCCTTATAATTCCCGAACGTT 58.555 43.478 0.00 0.00 0.00 3.99
2700 2995 4.847198 ACCCTTATAATTCCCGAACGTTT 58.153 39.130 0.46 0.00 0.00 3.60
2701 2996 4.637091 ACCCTTATAATTCCCGAACGTTTG 59.363 41.667 8.68 8.68 0.00 2.93
2702 2997 4.877251 CCCTTATAATTCCCGAACGTTTGA 59.123 41.667 17.38 4.63 0.00 2.69
2703 2998 5.354792 CCCTTATAATTCCCGAACGTTTGAA 59.645 40.000 17.38 13.15 0.00 2.69
2704 2999 6.038936 CCCTTATAATTCCCGAACGTTTGAAT 59.961 38.462 17.38 14.70 0.00 2.57
2705 3000 7.415877 CCCTTATAATTCCCGAACGTTTGAATT 60.416 37.037 24.68 24.68 39.83 2.17
2706 3001 7.971722 CCTTATAATTCCCGAACGTTTGAATTT 59.028 33.333 25.64 19.09 38.17 1.82
2707 3002 9.349145 CTTATAATTCCCGAACGTTTGAATTTT 57.651 29.630 25.64 22.00 38.17 1.82
2710 3005 7.631915 AATTCCCGAACGTTTGAATTTTAAG 57.368 32.000 17.38 0.00 34.65 1.85
2711 3006 4.538917 TCCCGAACGTTTGAATTTTAAGC 58.461 39.130 17.38 0.00 0.00 3.09
2712 3007 4.036498 TCCCGAACGTTTGAATTTTAAGCA 59.964 37.500 17.38 0.00 0.00 3.91
2713 3008 4.920927 CCCGAACGTTTGAATTTTAAGCAT 59.079 37.500 17.38 0.00 0.00 3.79
2714 3009 5.404066 CCCGAACGTTTGAATTTTAAGCATT 59.596 36.000 17.38 0.00 0.00 3.56
2715 3010 6.399564 CCCGAACGTTTGAATTTTAAGCATTC 60.400 38.462 17.38 3.53 0.00 2.67
2716 3011 6.399564 CCGAACGTTTGAATTTTAAGCATTCC 60.400 38.462 17.38 0.00 30.64 3.01
2717 3012 6.362283 CGAACGTTTGAATTTTAAGCATTCCT 59.638 34.615 10.16 0.00 30.64 3.36
2718 3013 7.096230 CGAACGTTTGAATTTTAAGCATTCCTT 60.096 33.333 10.16 0.00 37.57 3.36
2719 3014 7.637709 ACGTTTGAATTTTAAGCATTCCTTC 57.362 32.000 6.89 0.00 34.95 3.46
2720 3015 6.645003 ACGTTTGAATTTTAAGCATTCCTTCC 59.355 34.615 6.89 0.00 34.95 3.46
2721 3016 6.644592 CGTTTGAATTTTAAGCATTCCTTCCA 59.355 34.615 6.89 0.00 34.95 3.53
2722 3017 7.170658 CGTTTGAATTTTAAGCATTCCTTCCAA 59.829 33.333 6.89 0.00 34.95 3.53
2723 3018 8.835439 GTTTGAATTTTAAGCATTCCTTCCAAA 58.165 29.630 6.89 0.00 34.95 3.28
2724 3019 7.961325 TGAATTTTAAGCATTCCTTCCAAAC 57.039 32.000 6.89 0.00 34.95 2.93
2725 3020 6.644592 TGAATTTTAAGCATTCCTTCCAAACG 59.355 34.615 6.89 0.00 34.95 3.60
2726 3021 5.523438 TTTTAAGCATTCCTTCCAAACGT 57.477 34.783 0.00 0.00 34.95 3.99
2727 3022 5.523438 TTTAAGCATTCCTTCCAAACGTT 57.477 34.783 0.00 0.00 34.95 3.99
2728 3023 5.523438 TTAAGCATTCCTTCCAAACGTTT 57.477 34.783 7.96 7.96 34.95 3.60
2729 3024 4.400529 AAGCATTCCTTCCAAACGTTTT 57.599 36.364 11.66 0.00 0.00 2.43
2730 3025 4.400529 AGCATTCCTTCCAAACGTTTTT 57.599 36.364 11.66 0.00 0.00 1.94
2759 3054 3.107642 ACTTTAGTTGACACGAGGTGG 57.892 47.619 0.42 0.00 37.94 4.61
2760 3055 1.798813 CTTTAGTTGACACGAGGTGGC 59.201 52.381 0.42 0.00 42.82 5.01
2765 3060 4.456806 GACACGAGGTGGCAACTT 57.543 55.556 6.46 0.00 41.94 2.66
2766 3061 2.702847 GACACGAGGTGGCAACTTT 58.297 52.632 6.46 0.00 41.94 2.66
2767 3062 1.873698 GACACGAGGTGGCAACTTTA 58.126 50.000 6.46 0.00 41.94 1.85
2768 3063 1.798813 GACACGAGGTGGCAACTTTAG 59.201 52.381 6.46 4.15 41.94 1.85
2769 3064 1.140252 ACACGAGGTGGCAACTTTAGT 59.860 47.619 6.46 4.87 37.94 2.24
2770 3065 2.218603 CACGAGGTGGCAACTTTAGTT 58.781 47.619 6.46 0.00 39.12 2.24
2771 3066 4.542028 ACACGAGGTGGCAACTTTAGTTG 61.542 47.826 6.46 16.36 45.47 3.16
2772 3067 6.964088 ACACGAGGTGGCAACTTTAGTTGT 62.964 45.833 20.31 3.06 45.04 3.32
2793 3088 9.651913 AGTTGTTAAAACATGACAATTTTGTCT 57.348 25.926 20.65 7.13 44.78 3.41
2794 3089 9.900264 GTTGTTAAAACATGACAATTTTGTCTC 57.100 29.630 20.65 1.00 44.78 3.36
2795 3090 9.645059 TTGTTAAAACATGACAATTTTGTCTCA 57.355 25.926 20.65 6.22 44.78 3.27
2796 3091 9.645059 TGTTAAAACATGACAATTTTGTCTCAA 57.355 25.926 20.65 5.03 44.55 3.02
2828 3123 9.535878 TTTTGTCAGAAAATTACCATGTTTACC 57.464 29.630 0.00 0.00 0.00 2.85
2829 3124 7.825331 TGTCAGAAAATTACCATGTTTACCA 57.175 32.000 0.00 0.00 0.00 3.25
2830 3125 8.239038 TGTCAGAAAATTACCATGTTTACCAA 57.761 30.769 0.00 0.00 0.00 3.67
2831 3126 8.138712 TGTCAGAAAATTACCATGTTTACCAAC 58.861 33.333 0.00 0.00 0.00 3.77
2832 3127 7.597369 GTCAGAAAATTACCATGTTTACCAACC 59.403 37.037 0.00 0.00 31.02 3.77
2833 3128 7.507616 TCAGAAAATTACCATGTTTACCAACCT 59.492 33.333 0.00 0.00 31.02 3.50
2834 3129 7.812669 CAGAAAATTACCATGTTTACCAACCTC 59.187 37.037 0.00 0.00 31.02 3.85
2835 3130 7.507616 AGAAAATTACCATGTTTACCAACCTCA 59.492 33.333 0.00 0.00 31.02 3.86
2836 3131 6.584185 AATTACCATGTTTACCAACCTCAC 57.416 37.500 0.00 0.00 31.02 3.51
2837 3132 2.500229 ACCATGTTTACCAACCTCACG 58.500 47.619 0.00 0.00 31.02 4.35
2838 3133 2.158726 ACCATGTTTACCAACCTCACGT 60.159 45.455 0.00 0.00 31.02 4.49
2839 3134 2.225491 CCATGTTTACCAACCTCACGTG 59.775 50.000 9.94 9.94 31.02 4.49
2840 3135 2.983907 TGTTTACCAACCTCACGTGA 57.016 45.000 18.88 18.88 31.02 4.35
2841 3136 3.263489 TGTTTACCAACCTCACGTGAA 57.737 42.857 20.49 0.00 31.02 3.18
2842 3137 2.937799 TGTTTACCAACCTCACGTGAAC 59.062 45.455 20.49 11.64 31.02 3.18
2843 3138 3.200483 GTTTACCAACCTCACGTGAACT 58.800 45.455 20.49 4.15 0.00 3.01
2844 3139 4.141981 TGTTTACCAACCTCACGTGAACTA 60.142 41.667 20.49 0.00 29.95 2.24
2845 3140 4.669206 TTACCAACCTCACGTGAACTAA 57.331 40.909 20.49 6.03 0.00 2.24
2846 3141 3.547054 ACCAACCTCACGTGAACTAAA 57.453 42.857 20.49 0.00 0.00 1.85
2847 3142 3.876341 ACCAACCTCACGTGAACTAAAA 58.124 40.909 20.49 0.00 0.00 1.52
2848 3143 4.457466 ACCAACCTCACGTGAACTAAAAT 58.543 39.130 20.49 0.00 0.00 1.82
2849 3144 4.885325 ACCAACCTCACGTGAACTAAAATT 59.115 37.500 20.49 3.54 0.00 1.82
2850 3145 5.212194 CCAACCTCACGTGAACTAAAATTG 58.788 41.667 20.49 14.22 0.00 2.32
2851 3146 4.483476 ACCTCACGTGAACTAAAATTGC 57.517 40.909 20.49 0.00 0.00 3.56
2852 3147 3.252458 ACCTCACGTGAACTAAAATTGCC 59.748 43.478 20.49 0.00 0.00 4.52
2853 3148 3.252215 CCTCACGTGAACTAAAATTGCCA 59.748 43.478 20.49 0.00 0.00 4.92
2854 3149 4.217754 TCACGTGAACTAAAATTGCCAC 57.782 40.909 17.62 0.00 0.00 5.01
2856 3151 2.873472 ACGTGAACTAAAATTGCCACGA 59.127 40.909 17.63 0.00 46.87 4.35
2857 3152 3.312973 ACGTGAACTAAAATTGCCACGAA 59.687 39.130 17.63 0.00 46.87 3.85
2858 3153 4.201930 ACGTGAACTAAAATTGCCACGAAA 60.202 37.500 17.63 0.00 46.87 3.46
2859 3154 4.735822 CGTGAACTAAAATTGCCACGAAAA 59.264 37.500 0.00 0.00 46.87 2.29
2860 3155 5.108405 CGTGAACTAAAATTGCCACGAAAAG 60.108 40.000 0.00 0.00 46.87 2.27
2861 3156 5.746721 GTGAACTAAAATTGCCACGAAAAGT 59.253 36.000 0.00 0.00 0.00 2.66
2862 3157 9.323734 CGTGAACTAAAATTGCCACGAAAAGTG 62.324 40.741 0.00 0.00 46.87 3.16
2872 3167 1.923864 CACGAAAAGTGTTTGGGTTGC 59.076 47.619 0.00 0.00 45.51 4.17
2873 3168 1.134936 ACGAAAAGTGTTTGGGTTGCC 60.135 47.619 0.00 0.00 0.00 4.52
2874 3169 1.134965 CGAAAAGTGTTTGGGTTGCCA 60.135 47.619 0.00 0.00 0.00 4.92
2875 3170 2.482839 CGAAAAGTGTTTGGGTTGCCAT 60.483 45.455 0.00 0.00 0.00 4.40
2876 3171 2.618442 AAAGTGTTTGGGTTGCCATG 57.382 45.000 0.00 0.00 0.00 3.66
2877 3172 0.106521 AAGTGTTTGGGTTGCCATGC 59.893 50.000 0.00 0.00 0.00 4.06
2878 3173 0.760189 AGTGTTTGGGTTGCCATGCT 60.760 50.000 0.00 0.00 0.00 3.79
2879 3174 0.106521 GTGTTTGGGTTGCCATGCTT 59.893 50.000 0.00 0.00 0.00 3.91
2880 3175 1.342819 GTGTTTGGGTTGCCATGCTTA 59.657 47.619 0.00 0.00 0.00 3.09
2881 3176 2.042464 TGTTTGGGTTGCCATGCTTAA 58.958 42.857 0.00 0.00 0.00 1.85
2882 3177 2.435805 TGTTTGGGTTGCCATGCTTAAA 59.564 40.909 0.00 0.00 0.00 1.52
2883 3178 3.118261 TGTTTGGGTTGCCATGCTTAAAA 60.118 39.130 0.00 0.00 0.00 1.52
2884 3179 4.071423 GTTTGGGTTGCCATGCTTAAAAT 58.929 39.130 0.00 0.00 0.00 1.82
2885 3180 3.608316 TGGGTTGCCATGCTTAAAATC 57.392 42.857 0.00 0.00 0.00 2.17
2886 3181 2.235898 TGGGTTGCCATGCTTAAAATCC 59.764 45.455 0.00 0.00 0.00 3.01
2887 3182 2.235898 GGGTTGCCATGCTTAAAATCCA 59.764 45.455 0.00 0.00 0.00 3.41
2888 3183 3.307339 GGGTTGCCATGCTTAAAATCCAA 60.307 43.478 0.00 0.00 0.00 3.53
2889 3184 4.322567 GGTTGCCATGCTTAAAATCCAAA 58.677 39.130 0.00 0.00 0.00 3.28
2890 3185 4.943093 GGTTGCCATGCTTAAAATCCAAAT 59.057 37.500 0.00 0.00 0.00 2.32
2891 3186 5.163733 GGTTGCCATGCTTAAAATCCAAATG 60.164 40.000 0.00 0.00 0.00 2.32
2892 3187 5.163281 TGCCATGCTTAAAATCCAAATGT 57.837 34.783 0.00 0.00 0.00 2.71
2893 3188 5.558818 TGCCATGCTTAAAATCCAAATGTT 58.441 33.333 0.00 0.00 0.00 2.71
2894 3189 5.642919 TGCCATGCTTAAAATCCAAATGTTC 59.357 36.000 0.00 0.00 0.00 3.18
2895 3190 5.220453 GCCATGCTTAAAATCCAAATGTTCG 60.220 40.000 0.00 0.00 0.00 3.95
2896 3191 5.291614 CCATGCTTAAAATCCAAATGTTCGG 59.708 40.000 0.00 0.00 0.00 4.30
2897 3192 4.815269 TGCTTAAAATCCAAATGTTCGGG 58.185 39.130 0.00 0.00 0.00 5.14
2898 3193 4.524714 TGCTTAAAATCCAAATGTTCGGGA 59.475 37.500 0.00 0.00 34.70 5.14
2899 3194 5.186797 TGCTTAAAATCCAAATGTTCGGGAT 59.813 36.000 0.00 0.00 43.12 3.85
2906 3201 7.601705 AATCCAAATGTTCGGGATTTATCAT 57.398 32.000 0.00 0.00 46.51 2.45
2907 3202 7.601705 ATCCAAATGTTCGGGATTTATCATT 57.398 32.000 0.00 0.00 38.22 2.57
2908 3203 6.804677 TCCAAATGTTCGGGATTTATCATTG 58.195 36.000 0.00 0.00 0.00 2.82
2909 3204 5.984926 CCAAATGTTCGGGATTTATCATTGG 59.015 40.000 0.00 0.00 0.00 3.16
2910 3205 4.853924 ATGTTCGGGATTTATCATTGGC 57.146 40.909 0.00 0.00 0.00 4.52
2911 3206 2.955660 TGTTCGGGATTTATCATTGGCC 59.044 45.455 0.00 0.00 0.00 5.36
2912 3207 3.222603 GTTCGGGATTTATCATTGGCCT 58.777 45.455 3.32 0.00 0.00 5.19
2913 3208 3.593442 TCGGGATTTATCATTGGCCTT 57.407 42.857 3.32 0.00 0.00 4.35
2914 3209 4.715534 TCGGGATTTATCATTGGCCTTA 57.284 40.909 3.32 0.00 0.00 2.69
2915 3210 5.055265 TCGGGATTTATCATTGGCCTTAA 57.945 39.130 3.32 0.00 0.00 1.85
2916 3211 5.640147 TCGGGATTTATCATTGGCCTTAAT 58.360 37.500 3.32 0.00 0.00 1.40
2917 3212 6.074648 TCGGGATTTATCATTGGCCTTAATT 58.925 36.000 3.32 0.00 0.00 1.40
2918 3213 6.553100 TCGGGATTTATCATTGGCCTTAATTT 59.447 34.615 3.32 0.00 0.00 1.82
2919 3214 7.726291 TCGGGATTTATCATTGGCCTTAATTTA 59.274 33.333 3.32 0.00 0.00 1.40
2920 3215 8.364142 CGGGATTTATCATTGGCCTTAATTTAA 58.636 33.333 3.32 0.00 0.00 1.52
2921 3216 9.710900 GGGATTTATCATTGGCCTTAATTTAAG 57.289 33.333 3.32 8.88 35.56 1.85
3045 3341 5.845985 ATTGTGTGATTCTAAGTCACGTG 57.154 39.130 9.94 9.94 46.89 4.49
3146 3566 3.259123 ACTGGATCCACCTGAAATTTTGC 59.741 43.478 11.44 0.00 40.23 3.68
3200 3620 5.877012 CAGGAGCAACTACTACATGTCAATT 59.123 40.000 0.00 0.00 0.00 2.32
3263 3683 2.268920 GAGGCCAAGGTCATCGCA 59.731 61.111 5.01 0.00 0.00 5.10
3266 3686 2.747460 GCCAAGGTCATCGCAGCA 60.747 61.111 0.00 0.00 0.00 4.41
3677 4097 2.276732 AACAGTGAATGGAGTGGTGG 57.723 50.000 0.00 0.00 0.00 4.61
3679 4099 1.202806 ACAGTGAATGGAGTGGTGGTG 60.203 52.381 0.00 0.00 0.00 4.17
3680 4100 1.072173 CAGTGAATGGAGTGGTGGTGA 59.928 52.381 0.00 0.00 0.00 4.02
3681 4101 1.988107 AGTGAATGGAGTGGTGGTGAT 59.012 47.619 0.00 0.00 0.00 3.06
3682 4102 2.376518 AGTGAATGGAGTGGTGGTGATT 59.623 45.455 0.00 0.00 0.00 2.57
3683 4103 2.489329 GTGAATGGAGTGGTGGTGATTG 59.511 50.000 0.00 0.00 0.00 2.67
3684 4104 2.374839 TGAATGGAGTGGTGGTGATTGA 59.625 45.455 0.00 0.00 0.00 2.57
3687 4107 1.072173 TGGAGTGGTGGTGATTGAGTG 59.928 52.381 0.00 0.00 0.00 3.51
3773 4197 1.824230 TCCCGCAAAATAAAGCTGCAT 59.176 42.857 1.02 0.00 35.78 3.96
3948 4383 3.538591 GGAAACAATACTCCCCTAACCG 58.461 50.000 0.00 0.00 0.00 4.44
4123 4560 1.240256 TGTTTTGCGGGGTGATGTAC 58.760 50.000 0.00 0.00 0.00 2.90
4139 4576 7.973944 GGGTGATGTACATTTTTCCAAATACTC 59.026 37.037 10.30 0.00 30.90 2.59
4141 4578 8.234546 GTGATGTACATTTTTCCAAATACTCGT 58.765 33.333 10.30 0.00 30.90 4.18
4142 4579 8.447833 TGATGTACATTTTTCCAAATACTCGTC 58.552 33.333 10.30 0.00 30.90 4.20
4149 4586 9.410556 CATTTTTCCAAATACTCGTCAAATTCT 57.589 29.630 0.00 0.00 30.90 2.40
4164 4601 9.611284 TCGTCAAATTCTTTTTGATAGACATTG 57.389 29.630 4.28 0.00 40.12 2.82
4165 4602 9.611284 CGTCAAATTCTTTTTGATAGACATTGA 57.389 29.630 4.28 0.00 40.12 2.57
4208 4645 8.761575 ATGAACATTTTTCCACATACATGTTC 57.238 30.769 2.30 13.47 45.61 3.18
4211 4648 7.156876 ACATTTTTCCACATACATGTTCGAT 57.843 32.000 2.30 0.00 39.39 3.59
4212 4649 7.601856 ACATTTTTCCACATACATGTTCGATT 58.398 30.769 2.30 0.00 39.39 3.34
4213 4650 8.087750 ACATTTTTCCACATACATGTTCGATTT 58.912 29.630 2.30 0.00 39.39 2.17
4261 4703 8.398878 TCAATGGTACGGAAAACTTTCTAAAT 57.601 30.769 2.41 0.00 37.35 1.40
4262 4704 9.504708 TCAATGGTACGGAAAACTTTCTAAATA 57.495 29.630 2.41 0.00 37.35 1.40
4263 4705 9.550811 CAATGGTACGGAAAACTTTCTAAATAC 57.449 33.333 2.41 1.48 37.35 1.89
4264 4706 7.350110 TGGTACGGAAAACTTTCTAAATACG 57.650 36.000 2.41 0.00 37.35 3.06
4267 4709 7.116233 GGTACGGAAAACTTTCTAAATACGTGA 59.884 37.037 0.00 0.00 37.35 4.35
4268 4710 7.481275 ACGGAAAACTTTCTAAATACGTGAA 57.519 32.000 0.00 0.00 37.35 3.18
4269 4711 7.347448 ACGGAAAACTTTCTAAATACGTGAAC 58.653 34.615 0.00 0.00 37.35 3.18
4312 4759 5.337512 GCATTTTTGCAAAATGTCATGAACG 59.662 36.000 26.96 7.75 39.25 3.95
4315 4762 6.503616 TTTTGCAAAATGTCATGAACGTAC 57.496 33.333 20.46 0.00 0.00 3.67
4335 4782 5.878116 CGTACATTTGAAATCCTTGGACCTA 59.122 40.000 0.00 0.00 0.00 3.08
4340 4787 9.320295 ACATTTGAAATCCTTGGACCTATTTTA 57.680 29.630 0.00 0.00 0.00 1.52
4343 4790 7.938140 TGAAATCCTTGGACCTATTTTAGTG 57.062 36.000 0.00 0.00 0.00 2.74
4344 4791 7.466804 TGAAATCCTTGGACCTATTTTAGTGT 58.533 34.615 0.00 0.00 0.00 3.55
4345 4792 7.610305 TGAAATCCTTGGACCTATTTTAGTGTC 59.390 37.037 0.00 0.00 0.00 3.67
4346 4793 6.636454 ATCCTTGGACCTATTTTAGTGTCA 57.364 37.500 0.00 0.00 31.66 3.58
4347 4794 5.801380 TCCTTGGACCTATTTTAGTGTCAC 58.199 41.667 0.00 0.00 31.66 3.67
4348 4795 5.308497 TCCTTGGACCTATTTTAGTGTCACA 59.692 40.000 5.62 0.00 31.66 3.58
4351 4798 6.870971 TGGACCTATTTTAGTGTCACAAAC 57.129 37.500 5.62 0.00 31.66 2.93
4352 4799 6.358178 TGGACCTATTTTAGTGTCACAAACA 58.642 36.000 5.62 0.00 34.78 2.83
4357 4806 9.744468 ACCTATTTTAGTGTCACAAACATTTTC 57.256 29.630 5.62 0.00 40.80 2.29
4412 4861 3.919804 TGCGAGCATTTTCTTTACATTGC 59.080 39.130 0.00 0.00 0.00 3.56
4416 4865 6.291269 GCGAGCATTTTCTTTACATTGCATAC 60.291 38.462 0.00 0.00 32.66 2.39
4420 4869 9.439500 AGCATTTTCTTTACATTGCATACAAAT 57.561 25.926 0.00 0.00 39.77 2.32
4437 4886 7.585573 GCATACAAATTTTGAAACGCATGAAAA 59.414 29.630 15.81 0.00 0.00 2.29
4503 4958 5.352643 AAATACACAAACTTCTACACCGC 57.647 39.130 0.00 0.00 0.00 5.68
4504 4959 2.319136 ACACAAACTTCTACACCGCA 57.681 45.000 0.00 0.00 0.00 5.69
4506 4961 2.548057 ACACAAACTTCTACACCGCATG 59.452 45.455 0.00 0.00 0.00 4.06
4609 5074 9.436957 AAAAAGAAAGAAAAAGGAGAAAGAACC 57.563 29.630 0.00 0.00 0.00 3.62
4610 5075 7.718334 AAGAAAGAAAAAGGAGAAAGAACCA 57.282 32.000 0.00 0.00 0.00 3.67
4624 5099 2.391724 GAACCAGCGAACACCCCTGA 62.392 60.000 0.00 0.00 0.00 3.86
4640 5115 1.202855 CCTGAGTAGGGATGGCAATGG 60.203 57.143 0.00 0.00 40.63 3.16
4661 5136 3.732212 GGTACCCATTATCCACGTAACC 58.268 50.000 0.00 0.00 0.00 2.85
4662 5137 2.607631 ACCCATTATCCACGTAACCG 57.392 50.000 0.00 0.00 40.83 4.44
4663 5138 1.139455 ACCCATTATCCACGTAACCGG 59.861 52.381 0.00 0.00 38.78 5.28
4664 5139 1.223187 CCATTATCCACGTAACCGGC 58.777 55.000 0.00 0.00 38.78 6.13
4665 5140 0.856641 CATTATCCACGTAACCGGCG 59.143 55.000 0.00 0.00 38.78 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.874849 ACCAAGCGAACAAACACAAAG 58.125 42.857 0.00 0.00 0.00 2.77
2 3 2.989840 CAACCAAGCGAACAAACACAAA 59.010 40.909 0.00 0.00 0.00 2.83
3 4 2.229062 TCAACCAAGCGAACAAACACAA 59.771 40.909 0.00 0.00 0.00 3.33
4 5 1.813178 TCAACCAAGCGAACAAACACA 59.187 42.857 0.00 0.00 0.00 3.72
5 6 2.553079 TCAACCAAGCGAACAAACAC 57.447 45.000 0.00 0.00 0.00 3.32
6 7 2.425312 ACATCAACCAAGCGAACAAACA 59.575 40.909 0.00 0.00 0.00 2.83
7 8 3.078594 ACATCAACCAAGCGAACAAAC 57.921 42.857 0.00 0.00 0.00 2.93
8 9 3.119316 ACAACATCAACCAAGCGAACAAA 60.119 39.130 0.00 0.00 0.00 2.83
9 10 2.425312 ACAACATCAACCAAGCGAACAA 59.575 40.909 0.00 0.00 0.00 2.83
10 11 2.020720 ACAACATCAACCAAGCGAACA 58.979 42.857 0.00 0.00 0.00 3.18
11 12 2.384382 CACAACATCAACCAAGCGAAC 58.616 47.619 0.00 0.00 0.00 3.95
12 13 1.268999 GCACAACATCAACCAAGCGAA 60.269 47.619 0.00 0.00 0.00 4.70
13 14 0.310543 GCACAACATCAACCAAGCGA 59.689 50.000 0.00 0.00 0.00 4.93
14 15 0.998226 CGCACAACATCAACCAAGCG 60.998 55.000 0.00 0.00 37.91 4.68
15 16 0.030638 ACGCACAACATCAACCAAGC 59.969 50.000 0.00 0.00 0.00 4.01
16 17 2.118683 CAACGCACAACATCAACCAAG 58.881 47.619 0.00 0.00 0.00 3.61
17 18 1.202348 CCAACGCACAACATCAACCAA 60.202 47.619 0.00 0.00 0.00 3.67
18 19 0.383590 CCAACGCACAACATCAACCA 59.616 50.000 0.00 0.00 0.00 3.67
19 20 0.383949 ACCAACGCACAACATCAACC 59.616 50.000 0.00 0.00 0.00 3.77
20 21 2.289547 AGTACCAACGCACAACATCAAC 59.710 45.455 0.00 0.00 0.00 3.18
21 22 2.546368 GAGTACCAACGCACAACATCAA 59.454 45.455 0.00 0.00 0.00 2.57
22 23 2.139917 GAGTACCAACGCACAACATCA 58.860 47.619 0.00 0.00 0.00 3.07
23 24 2.157668 CAGAGTACCAACGCACAACATC 59.842 50.000 0.00 0.00 0.00 3.06
24 25 2.143122 CAGAGTACCAACGCACAACAT 58.857 47.619 0.00 0.00 0.00 2.71
25 26 1.577468 CAGAGTACCAACGCACAACA 58.423 50.000 0.00 0.00 0.00 3.33
26 27 0.234884 GCAGAGTACCAACGCACAAC 59.765 55.000 0.00 0.00 0.00 3.32
27 28 0.882927 GGCAGAGTACCAACGCACAA 60.883 55.000 0.00 0.00 0.00 3.33
28 29 1.301401 GGCAGAGTACCAACGCACA 60.301 57.895 0.00 0.00 0.00 4.57
29 30 0.245539 TAGGCAGAGTACCAACGCAC 59.754 55.000 0.00 0.00 0.00 5.34
30 31 0.530744 CTAGGCAGAGTACCAACGCA 59.469 55.000 0.00 0.00 0.00 5.24
31 32 0.531200 ACTAGGCAGAGTACCAACGC 59.469 55.000 0.00 0.00 0.00 4.84
32 33 1.135083 CCACTAGGCAGAGTACCAACG 60.135 57.143 0.00 0.00 0.00 4.10
33 34 2.674796 CCACTAGGCAGAGTACCAAC 57.325 55.000 0.00 0.00 0.00 3.77
48 49 9.174166 ACACTCGATTTTATAAATAAAGCCACT 57.826 29.630 0.00 0.00 34.13 4.00
61 62 9.877178 AGAGAAAAGACATACACTCGATTTTAT 57.123 29.630 0.00 0.00 0.00 1.40
63 64 9.706691 TTAGAGAAAAGACATACACTCGATTTT 57.293 29.630 0.00 0.00 0.00 1.82
64 65 9.706691 TTTAGAGAAAAGACATACACTCGATTT 57.293 29.630 0.00 0.00 0.00 2.17
65 66 9.706691 TTTTAGAGAAAAGACATACACTCGATT 57.293 29.630 0.00 0.00 30.89 3.34
66 67 9.706691 TTTTTAGAGAAAAGACATACACTCGAT 57.293 29.630 0.00 0.00 35.96 3.59
90 91 5.789643 ATGCATCCTATTATGGCGTTTTT 57.210 34.783 0.00 0.00 0.00 1.94
91 92 5.301551 TCAATGCATCCTATTATGGCGTTTT 59.698 36.000 0.00 0.00 0.00 2.43
92 93 4.826733 TCAATGCATCCTATTATGGCGTTT 59.173 37.500 0.00 0.00 0.00 3.60
93 94 4.397420 TCAATGCATCCTATTATGGCGTT 58.603 39.130 0.00 0.00 0.00 4.84
94 95 4.005650 CTCAATGCATCCTATTATGGCGT 58.994 43.478 0.00 0.00 0.00 5.68
95 96 4.256110 TCTCAATGCATCCTATTATGGCG 58.744 43.478 0.00 0.00 0.00 5.69
96 97 5.251764 ACTCTCAATGCATCCTATTATGGC 58.748 41.667 0.00 0.00 0.00 4.40
101 102 4.596643 AGGCTACTCTCAATGCATCCTATT 59.403 41.667 0.00 0.00 0.00 1.73
115 116 6.239176 GCAGTCAAGTATGATAAGGCTACTCT 60.239 42.308 0.00 0.00 38.01 3.24
116 117 5.923684 GCAGTCAAGTATGATAAGGCTACTC 59.076 44.000 0.00 0.00 38.01 2.59
118 119 4.991687 GGCAGTCAAGTATGATAAGGCTAC 59.008 45.833 0.00 0.00 38.01 3.58
126 127 1.743772 GCGGTGGCAGTCAAGTATGAT 60.744 52.381 0.00 0.00 37.19 2.45
128 129 1.369091 GGCGGTGGCAGTCAAGTATG 61.369 60.000 0.00 0.00 42.47 2.39
141 142 2.718747 TAACCAACTGACCGGCGGTG 62.719 60.000 39.41 25.61 35.25 4.94
142 143 2.444700 CTAACCAACTGACCGGCGGT 62.445 60.000 34.81 34.81 39.44 5.68
143 144 1.740296 CTAACCAACTGACCGGCGG 60.740 63.158 27.06 27.06 0.00 6.13
146 147 1.376812 GGGCTAACCAACTGACCGG 60.377 63.158 0.00 0.00 39.85 5.28
199 200 2.646175 CCCTTTCGGCTGAGTCGGA 61.646 63.158 6.62 0.00 0.00 4.55
214 215 9.975218 TTATAGAAGAAAATCTTTAAGCACCCT 57.025 29.630 0.00 0.00 36.73 4.34
266 267 0.889306 CTAGTATACGGAGGCCAGCC 59.111 60.000 5.01 4.78 0.00 4.85
282 283 3.075884 GTCTAGCGGGATAGTGGTCTAG 58.924 54.545 0.00 0.00 0.00 2.43
540 552 7.492352 TTGGTCTTTCTTAGTCTGTAAAAGC 57.508 36.000 0.00 0.00 0.00 3.51
724 766 6.903516 ACAAATATTGATGTCCCTCTCATGA 58.096 36.000 0.00 0.00 0.00 3.07
822 864 2.540973 GCTTCTGTGTTTGGTTTCGGAC 60.541 50.000 0.00 0.00 0.00 4.79
836 878 0.183492 TCTGGCTTGGTTGCTTCTGT 59.817 50.000 0.00 0.00 0.00 3.41
896 938 5.197451 AGTAAGTACAGGTGATGAGAGGAG 58.803 45.833 0.00 0.00 0.00 3.69
903 945 6.366332 GTGAAGTCAAGTAAGTACAGGTGATG 59.634 42.308 0.00 0.00 0.00 3.07
904 946 6.456501 GTGAAGTCAAGTAAGTACAGGTGAT 58.543 40.000 0.00 0.00 0.00 3.06
905 947 5.221382 GGTGAAGTCAAGTAAGTACAGGTGA 60.221 44.000 0.00 0.00 0.00 4.02
906 948 4.989168 GGTGAAGTCAAGTAAGTACAGGTG 59.011 45.833 0.00 0.00 0.00 4.00
907 949 4.040095 GGGTGAAGTCAAGTAAGTACAGGT 59.960 45.833 0.00 0.00 0.00 4.00
908 950 4.283722 AGGGTGAAGTCAAGTAAGTACAGG 59.716 45.833 0.00 0.00 0.00 4.00
980 1034 2.554142 TGCTGCGTATTCTTGATCTGG 58.446 47.619 0.00 0.00 0.00 3.86
992 1046 1.155889 CTTTCCACACATGCTGCGTA 58.844 50.000 0.00 0.00 0.00 4.42
995 1049 1.135199 CCATCTTTCCACACATGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
1168 1226 6.091437 CGGTATACCCTAAATTAGCGAAGAG 58.909 44.000 16.47 0.00 0.00 2.85
1187 1245 2.172717 CTCCAAATTCTCCACCCGGTAT 59.827 50.000 0.00 0.00 0.00 2.73
1192 1250 1.636003 ACTCCTCCAAATTCTCCACCC 59.364 52.381 0.00 0.00 0.00 4.61
1355 1414 2.949106 CACACTTTCTGCGGCCAG 59.051 61.111 2.24 0.00 40.54 4.85
1494 1561 1.481901 TACTGCGGGTACTTGGCCAA 61.482 55.000 19.25 19.25 0.00 4.52
1532 1599 2.050144 TCCTTGTCACAGCTTTCCTCT 58.950 47.619 0.00 0.00 0.00 3.69
1634 1701 3.072468 GATGGTGACCCCGTCGGA 61.072 66.667 14.39 0.00 39.44 4.55
1881 1948 2.158370 GGAACCCCCTTCTCTTTGGAAA 60.158 50.000 0.00 0.00 0.00 3.13
1884 1951 3.672066 GGAACCCCCTTCTCTTTGG 57.328 57.895 0.00 0.00 0.00 3.28
1898 1965 0.902984 AAAAATGGGGCGGAGGGAAC 60.903 55.000 0.00 0.00 0.00 3.62
1918 1985 7.875554 AGTTTTGTTTTCTTGCCTTGTTTCTAA 59.124 29.630 0.00 0.00 0.00 2.10
1945 2013 1.272147 ACTTTGGCTCATCCTGGGAAC 60.272 52.381 0.00 0.00 35.26 3.62
1946 2014 1.075601 ACTTTGGCTCATCCTGGGAA 58.924 50.000 0.00 0.00 35.26 3.97
1947 2015 1.839994 CTACTTTGGCTCATCCTGGGA 59.160 52.381 0.00 0.00 35.26 4.37
1949 2017 3.012518 CAACTACTTTGGCTCATCCTGG 58.987 50.000 0.00 0.00 35.26 4.45
1954 2026 2.040278 TGGCTCAACTACTTTGGCTCAT 59.960 45.455 0.00 0.00 35.69 2.90
1955 2027 1.419762 TGGCTCAACTACTTTGGCTCA 59.580 47.619 0.00 0.00 35.69 4.26
1974 2048 4.712337 AGATGGAGGGAGTAGTTGTTACTG 59.288 45.833 0.00 0.00 42.69 2.74
2025 2099 9.005777 TGTCGCTGATTTAATACTAAGGTTTTT 57.994 29.630 0.00 0.00 0.00 1.94
2026 2100 8.448615 GTGTCGCTGATTTAATACTAAGGTTTT 58.551 33.333 0.00 0.00 0.00 2.43
2027 2101 7.822822 AGTGTCGCTGATTTAATACTAAGGTTT 59.177 33.333 0.00 0.00 0.00 3.27
2028 2102 7.328737 AGTGTCGCTGATTTAATACTAAGGTT 58.671 34.615 0.00 0.00 0.00 3.50
2029 2103 6.875076 AGTGTCGCTGATTTAATACTAAGGT 58.125 36.000 0.00 0.00 0.00 3.50
2030 2104 7.772332 AAGTGTCGCTGATTTAATACTAAGG 57.228 36.000 0.00 0.00 0.00 2.69
2040 2114 8.946085 TCATTCTAAAATAAGTGTCGCTGATTT 58.054 29.630 3.21 3.21 39.41 2.17
2041 2115 8.492673 TCATTCTAAAATAAGTGTCGCTGATT 57.507 30.769 0.00 0.00 29.37 2.57
2042 2116 8.492673 TTCATTCTAAAATAAGTGTCGCTGAT 57.507 30.769 0.00 0.00 0.00 2.90
2043 2117 7.899178 TTCATTCTAAAATAAGTGTCGCTGA 57.101 32.000 0.00 0.00 0.00 4.26
2044 2118 9.855361 CTATTCATTCTAAAATAAGTGTCGCTG 57.145 33.333 0.00 0.00 0.00 5.18
2045 2119 9.817809 TCTATTCATTCTAAAATAAGTGTCGCT 57.182 29.630 0.00 0.00 0.00 4.93
2075 2149 9.798994 GACCTCTACGAATGAAACTATAGAAAA 57.201 33.333 6.78 0.00 0.00 2.29
2076 2150 9.186837 AGACCTCTACGAATGAAACTATAGAAA 57.813 33.333 6.78 0.00 0.00 2.52
2077 2151 8.749026 AGACCTCTACGAATGAAACTATAGAA 57.251 34.615 6.78 0.00 0.00 2.10
2078 2152 8.749026 AAGACCTCTACGAATGAAACTATAGA 57.251 34.615 6.78 0.00 0.00 1.98
2079 2153 7.799447 CGAAGACCTCTACGAATGAAACTATAG 59.201 40.741 0.00 0.00 0.00 1.31
2080 2154 7.496920 TCGAAGACCTCTACGAATGAAACTATA 59.503 37.037 0.00 0.00 0.00 1.31
2081 2155 6.318144 TCGAAGACCTCTACGAATGAAACTAT 59.682 38.462 0.00 0.00 0.00 2.12
2085 2159 5.048224 AGTTCGAAGACCTCTACGAATGAAA 60.048 40.000 0.00 0.00 44.23 2.69
2087 2161 4.008330 AGTTCGAAGACCTCTACGAATGA 58.992 43.478 0.00 0.00 44.23 2.57
2088 2162 4.099120 CAGTTCGAAGACCTCTACGAATG 58.901 47.826 0.00 0.00 44.23 2.67
2092 2166 1.469308 AGCAGTTCGAAGACCTCTACG 59.531 52.381 0.00 0.00 34.32 3.51
2093 2167 3.690628 AGTAGCAGTTCGAAGACCTCTAC 59.309 47.826 0.00 6.50 33.52 2.59
2102 2176 5.449107 AGTTTAGTGAGTAGCAGTTCGAA 57.551 39.130 0.00 0.00 0.00 3.71
2104 2178 5.921408 AGAAAGTTTAGTGAGTAGCAGTTCG 59.079 40.000 0.00 0.00 0.00 3.95
2110 2184 6.546972 AGCAAAGAAAGTTTAGTGAGTAGC 57.453 37.500 0.00 0.00 0.00 3.58
2117 2191 9.127277 TGGTATGTAAAGCAAAGAAAGTTTAGT 57.873 29.630 0.00 0.00 0.00 2.24
2185 2259 1.829096 GAGGCCGGGTCTCTACCTC 60.829 68.421 21.25 10.59 45.95 3.85
2226 2416 5.065218 GCAGTCGTTGAATAAATCACAGGAT 59.935 40.000 0.00 0.00 37.92 3.24
2227 2417 4.391830 GCAGTCGTTGAATAAATCACAGGA 59.608 41.667 0.00 0.00 37.92 3.86
2228 2418 4.154015 TGCAGTCGTTGAATAAATCACAGG 59.846 41.667 0.00 0.00 37.92 4.00
2229 2419 5.120674 TCTGCAGTCGTTGAATAAATCACAG 59.879 40.000 14.67 0.00 37.92 3.66
2244 2434 3.119291 GTCACCATCTATTCTGCAGTCG 58.881 50.000 14.67 0.90 0.00 4.18
2245 2435 3.868077 GTGTCACCATCTATTCTGCAGTC 59.132 47.826 14.67 0.00 0.00 3.51
2246 2436 3.261643 TGTGTCACCATCTATTCTGCAGT 59.738 43.478 14.67 0.00 0.00 4.40
2247 2437 3.865446 TGTGTCACCATCTATTCTGCAG 58.135 45.455 7.63 7.63 0.00 4.41
2249 2439 5.355071 TGATTTGTGTCACCATCTATTCTGC 59.645 40.000 0.00 0.00 0.00 4.26
2252 2443 9.132521 CTTTTTGATTTGTGTCACCATCTATTC 57.867 33.333 0.00 0.00 0.00 1.75
2273 2475 3.023119 TGTGCATCTGGTGTGTCTTTTT 58.977 40.909 0.00 0.00 0.00 1.94
2338 2540 7.410991 AGGGTTGTTGATTTATATATAGCCCC 58.589 38.462 0.00 0.00 0.00 5.80
2356 2558 5.766590 CCCCTCAAATTATTCTAGGGTTGT 58.233 41.667 17.85 0.00 44.68 3.32
2369 2571 1.000896 CTCGGGTGCCCCTCAAATT 60.001 57.895 8.43 0.00 42.67 1.82
2370 2572 0.912487 TACTCGGGTGCCCCTCAAAT 60.912 55.000 0.00 0.00 42.67 2.32
2382 2585 5.515797 TCTCACAGTAATTCATACTCGGG 57.484 43.478 0.00 0.00 43.12 5.14
2384 2587 9.388346 GTAGATTCTCACAGTAATTCATACTCG 57.612 37.037 0.00 0.00 43.12 4.18
2392 2595 9.739276 TGGATTTTGTAGATTCTCACAGTAATT 57.261 29.630 0.00 0.00 0.00 1.40
2393 2596 9.739276 TTGGATTTTGTAGATTCTCACAGTAAT 57.261 29.630 0.00 0.00 0.00 1.89
2418 2704 6.928492 TCTTTTTGGCTTGCGAGAATTTTATT 59.072 30.769 4.70 0.00 0.00 1.40
2429 2715 0.881118 TAGGCTCTTTTTGGCTTGCG 59.119 50.000 0.00 0.00 40.79 4.85
2443 2729 5.520751 ACAGACTACCTAGACATTTAGGCT 58.479 41.667 0.00 0.00 43.36 4.58
2455 2741 7.230510 ACATTGCAAATGAAAACAGACTACCTA 59.769 33.333 1.71 0.00 0.00 3.08
2457 2743 6.144402 CACATTGCAAATGAAAACAGACTACC 59.856 38.462 1.71 0.00 0.00 3.18
2467 2759 7.013178 TGAGTCTAAGACACATTGCAAATGAAA 59.987 33.333 18.17 0.00 34.60 2.69
2472 2764 7.161404 ACTATGAGTCTAAGACACATTGCAAA 58.839 34.615 1.71 0.00 39.96 3.68
2528 2823 6.514376 TCAACATATGATATACACGCTCGTGT 60.514 38.462 27.46 27.46 46.24 4.49
2529 2824 5.856455 TCAACATATGATATACACGCTCGTG 59.144 40.000 19.36 19.36 41.57 4.35
2530 2825 6.009115 TCAACATATGATATACACGCTCGT 57.991 37.500 10.38 0.00 31.50 4.18
2543 2838 9.573166 CACCCTTATTTTCCTATCAACATATGA 57.427 33.333 10.38 0.00 43.67 2.15
2544 2839 9.573166 TCACCCTTATTTTCCTATCAACATATG 57.427 33.333 0.00 0.00 0.00 1.78
2546 2841 9.627123 CTTCACCCTTATTTTCCTATCAACATA 57.373 33.333 0.00 0.00 0.00 2.29
2547 2842 8.336235 TCTTCACCCTTATTTTCCTATCAACAT 58.664 33.333 0.00 0.00 0.00 2.71
2548 2843 7.695055 TCTTCACCCTTATTTTCCTATCAACA 58.305 34.615 0.00 0.00 0.00 3.33
2549 2844 8.575649 TTCTTCACCCTTATTTTCCTATCAAC 57.424 34.615 0.00 0.00 0.00 3.18
2550 2845 9.020731 GTTTCTTCACCCTTATTTTCCTATCAA 57.979 33.333 0.00 0.00 0.00 2.57
2551 2846 7.614192 GGTTTCTTCACCCTTATTTTCCTATCA 59.386 37.037 0.00 0.00 0.00 2.15
2552 2847 7.997482 GGTTTCTTCACCCTTATTTTCCTATC 58.003 38.462 0.00 0.00 0.00 2.08
2553 2848 7.956328 GGTTTCTTCACCCTTATTTTCCTAT 57.044 36.000 0.00 0.00 0.00 2.57
2566 2861 2.358322 TGGTTGAGGGTTTCTTCACC 57.642 50.000 0.00 0.00 35.88 4.02
2567 2862 2.623416 CCTTGGTTGAGGGTTTCTTCAC 59.377 50.000 0.00 0.00 32.94 3.18
2568 2863 2.243736 ACCTTGGTTGAGGGTTTCTTCA 59.756 45.455 0.00 0.00 41.31 3.02
2569 2864 2.945456 ACCTTGGTTGAGGGTTTCTTC 58.055 47.619 0.00 0.00 41.31 2.87
2570 2865 3.398318 AACCTTGGTTGAGGGTTTCTT 57.602 42.857 4.00 0.00 39.97 2.52
2571 2866 3.031013 CAAACCTTGGTTGAGGGTTTCT 58.969 45.455 5.74 0.00 44.28 2.52
2572 2867 2.764010 ACAAACCTTGGTTGAGGGTTTC 59.236 45.455 5.74 0.00 44.28 2.78
2573 2868 2.827755 ACAAACCTTGGTTGAGGGTTT 58.172 42.857 5.74 0.00 44.28 3.27
2575 2870 3.203487 TCTTACAAACCTTGGTTGAGGGT 59.797 43.478 5.74 5.47 41.31 4.34
2576 2871 3.827722 TCTTACAAACCTTGGTTGAGGG 58.172 45.455 5.74 0.00 41.31 4.30
2577 2872 4.037565 GGTTCTTACAAACCTTGGTTGAGG 59.962 45.833 5.74 2.25 44.45 3.86
2578 2873 4.037565 GGGTTCTTACAAACCTTGGTTGAG 59.962 45.833 5.74 4.96 46.59 3.02
2579 2874 3.955551 GGGTTCTTACAAACCTTGGTTGA 59.044 43.478 5.74 0.00 46.59 3.18
2580 2875 3.243267 CGGGTTCTTACAAACCTTGGTTG 60.243 47.826 5.74 0.00 46.59 3.77
2581 2876 2.953648 CGGGTTCTTACAAACCTTGGTT 59.046 45.455 0.00 0.00 46.59 3.67
2582 2877 2.578786 CGGGTTCTTACAAACCTTGGT 58.421 47.619 5.83 0.00 46.59 3.67
2583 2878 1.883926 CCGGGTTCTTACAAACCTTGG 59.116 52.381 0.00 4.90 46.59 3.61
2584 2879 2.578786 ACCGGGTTCTTACAAACCTTG 58.421 47.619 6.32 0.92 46.59 3.61
2585 2880 3.301794 AACCGGGTTCTTACAAACCTT 57.698 42.857 6.59 0.00 46.59 3.50
2586 2881 3.301794 AAACCGGGTTCTTACAAACCT 57.698 42.857 13.78 0.00 46.59 3.50
2587 2882 4.580167 AGTAAAACCGGGTTCTTACAAACC 59.420 41.667 27.43 13.68 46.66 3.27
2588 2883 5.756195 AGTAAAACCGGGTTCTTACAAAC 57.244 39.130 27.43 15.46 0.00 2.93
2589 2884 5.997129 CCTAGTAAAACCGGGTTCTTACAAA 59.003 40.000 27.43 20.13 0.00 2.83
2590 2885 5.550290 CCTAGTAAAACCGGGTTCTTACAA 58.450 41.667 27.43 11.40 0.00 2.41
2591 2886 4.563374 GCCTAGTAAAACCGGGTTCTTACA 60.563 45.833 27.43 19.21 0.00 2.41
2592 2887 3.935203 GCCTAGTAAAACCGGGTTCTTAC 59.065 47.826 23.09 23.09 0.00 2.34
2593 2888 3.840078 AGCCTAGTAAAACCGGGTTCTTA 59.160 43.478 13.78 10.87 0.00 2.10
2594 2889 2.641321 AGCCTAGTAAAACCGGGTTCTT 59.359 45.455 13.78 11.80 0.00 2.52
2595 2890 2.263545 AGCCTAGTAAAACCGGGTTCT 58.736 47.619 13.78 8.78 0.00 3.01
2596 2891 2.775911 AGCCTAGTAAAACCGGGTTC 57.224 50.000 13.78 0.51 0.00 3.62
2597 2892 3.176411 ACTAGCCTAGTAAAACCGGGTT 58.824 45.455 6.59 6.59 37.23 4.11
2598 2893 2.825223 ACTAGCCTAGTAAAACCGGGT 58.175 47.619 6.32 0.00 37.23 5.28
2599 2894 3.243670 GCTACTAGCCTAGTAAAACCGGG 60.244 52.174 12.47 0.00 40.49 5.73
2600 2895 3.974912 GCTACTAGCCTAGTAAAACCGG 58.025 50.000 12.47 0.00 40.49 5.28
2615 2910 7.239438 AGGCAATACATCTTACTAGGCTACTA 58.761 38.462 0.00 0.00 0.00 1.82
2616 2911 6.078664 AGGCAATACATCTTACTAGGCTACT 58.921 40.000 0.00 0.00 0.00 2.57
2617 2912 6.347859 AGGCAATACATCTTACTAGGCTAC 57.652 41.667 0.00 0.00 0.00 3.58
2618 2913 6.996180 AAGGCAATACATCTTACTAGGCTA 57.004 37.500 0.00 0.00 0.00 3.93
2619 2914 5.896073 AAGGCAATACATCTTACTAGGCT 57.104 39.130 0.00 0.00 0.00 4.58
2620 2915 5.823045 ACAAAGGCAATACATCTTACTAGGC 59.177 40.000 0.00 0.00 0.00 3.93
2621 2916 7.012421 GGAACAAAGGCAATACATCTTACTAGG 59.988 40.741 0.00 0.00 0.00 3.02
2622 2917 7.552687 TGGAACAAAGGCAATACATCTTACTAG 59.447 37.037 0.00 0.00 31.92 2.57
2623 2918 7.398829 TGGAACAAAGGCAATACATCTTACTA 58.601 34.615 0.00 0.00 31.92 1.82
2624 2919 6.245408 TGGAACAAAGGCAATACATCTTACT 58.755 36.000 0.00 0.00 31.92 2.24
2625 2920 6.151144 ACTGGAACAAAGGCAATACATCTTAC 59.849 38.462 0.00 0.00 38.70 2.34
2626 2921 6.245408 ACTGGAACAAAGGCAATACATCTTA 58.755 36.000 0.00 0.00 38.70 2.10
2627 2922 5.079643 ACTGGAACAAAGGCAATACATCTT 58.920 37.500 0.00 0.00 38.70 2.40
2628 2923 4.666512 ACTGGAACAAAGGCAATACATCT 58.333 39.130 0.00 0.00 38.70 2.90
2629 2924 6.509418 TTACTGGAACAAAGGCAATACATC 57.491 37.500 0.00 0.00 38.70 3.06
2630 2925 6.909550 TTTACTGGAACAAAGGCAATACAT 57.090 33.333 0.00 0.00 38.70 2.29
2631 2926 6.909550 ATTTACTGGAACAAAGGCAATACA 57.090 33.333 0.00 0.00 38.70 2.29
2632 2927 9.353999 CTTTATTTACTGGAACAAAGGCAATAC 57.646 33.333 0.00 0.00 38.70 1.89
2633 2928 9.084533 ACTTTATTTACTGGAACAAAGGCAATA 57.915 29.630 9.51 0.00 38.70 1.90
2634 2929 7.872483 CACTTTATTTACTGGAACAAAGGCAAT 59.128 33.333 9.51 0.00 38.70 3.56
2635 2930 7.206687 CACTTTATTTACTGGAACAAAGGCAA 58.793 34.615 9.51 0.00 38.70 4.52
2642 2937 3.120477 CGCGCACTTTATTTACTGGAACA 60.120 43.478 8.75 0.00 0.00 3.18
2643 2938 3.413558 CGCGCACTTTATTTACTGGAAC 58.586 45.455 8.75 0.00 0.00 3.62
2647 2942 2.519002 TGCGCGCACTTTATTTACTG 57.481 45.000 33.09 0.00 0.00 2.74
2649 2944 5.918387 TTAAATGCGCGCACTTTATTTAC 57.082 34.783 39.05 0.00 0.00 2.01
2657 2952 2.680841 TCCTAAATTAAATGCGCGCACT 59.319 40.909 39.05 26.35 0.00 4.40
2658 2953 2.781646 GTCCTAAATTAAATGCGCGCAC 59.218 45.455 39.05 15.25 0.00 5.34
2659 2954 2.223386 GGTCCTAAATTAAATGCGCGCA 60.223 45.455 38.27 38.27 0.00 6.09
2662 2957 4.649088 AAGGGTCCTAAATTAAATGCGC 57.351 40.909 0.00 0.00 0.00 6.09
2672 2967 6.594744 GTTCGGGAATTATAAGGGTCCTAAA 58.405 40.000 10.76 5.17 0.00 1.85
2673 2968 5.221501 CGTTCGGGAATTATAAGGGTCCTAA 60.222 44.000 10.76 5.40 0.00 2.69
2675 2970 3.070590 CGTTCGGGAATTATAAGGGTCCT 59.929 47.826 10.76 0.00 0.00 3.85
2676 2971 3.181462 ACGTTCGGGAATTATAAGGGTCC 60.181 47.826 4.69 4.69 0.00 4.46
2677 2972 4.063998 ACGTTCGGGAATTATAAGGGTC 57.936 45.455 0.00 0.00 0.00 4.46
2679 2974 4.877251 TCAAACGTTCGGGAATTATAAGGG 59.123 41.667 0.00 0.00 0.00 3.95
2680 2975 6.425577 TTCAAACGTTCGGGAATTATAAGG 57.574 37.500 0.00 0.00 0.00 2.69
2681 2976 8.905103 AAATTCAAACGTTCGGGAATTATAAG 57.095 30.769 23.87 0.00 38.60 1.73
2684 2979 9.349145 CTTAAAATTCAAACGTTCGGGAATTAT 57.651 29.630 23.87 16.10 38.60 1.28
2685 2980 7.326547 GCTTAAAATTCAAACGTTCGGGAATTA 59.673 33.333 23.87 13.89 38.60 1.40
2686 2981 6.144886 GCTTAAAATTCAAACGTTCGGGAATT 59.855 34.615 20.64 20.64 40.59 2.17
2687 2982 5.631929 GCTTAAAATTCAAACGTTCGGGAAT 59.368 36.000 0.00 8.96 0.00 3.01
2688 2983 4.977347 GCTTAAAATTCAAACGTTCGGGAA 59.023 37.500 0.00 6.86 0.00 3.97
2689 2984 4.036498 TGCTTAAAATTCAAACGTTCGGGA 59.964 37.500 0.00 0.00 0.00 5.14
2690 2985 4.291783 TGCTTAAAATTCAAACGTTCGGG 58.708 39.130 0.00 0.00 0.00 5.14
2691 2986 6.399564 GGAATGCTTAAAATTCAAACGTTCGG 60.400 38.462 0.00 0.00 36.03 4.30
2692 2987 6.362283 AGGAATGCTTAAAATTCAAACGTTCG 59.638 34.615 0.00 0.00 36.03 3.95
2693 2988 7.637709 AGGAATGCTTAAAATTCAAACGTTC 57.362 32.000 0.00 0.00 36.03 3.95
2694 2989 7.170828 GGAAGGAATGCTTAAAATTCAAACGTT 59.829 33.333 0.00 0.00 36.03 3.99
2695 2990 6.645003 GGAAGGAATGCTTAAAATTCAAACGT 59.355 34.615 10.94 0.00 36.03 3.99
2696 2991 6.644592 TGGAAGGAATGCTTAAAATTCAAACG 59.355 34.615 10.94 0.00 36.03 3.60
2697 2992 7.961325 TGGAAGGAATGCTTAAAATTCAAAC 57.039 32.000 10.94 3.82 36.03 2.93
2698 2993 8.835439 GTTTGGAAGGAATGCTTAAAATTCAAA 58.165 29.630 10.94 0.00 36.03 2.69
2699 2994 7.170658 CGTTTGGAAGGAATGCTTAAAATTCAA 59.829 33.333 10.94 0.00 36.03 2.69
2700 2995 6.644592 CGTTTGGAAGGAATGCTTAAAATTCA 59.355 34.615 10.94 0.00 36.03 2.57
2701 2996 6.645003 ACGTTTGGAAGGAATGCTTAAAATTC 59.355 34.615 0.00 3.08 34.00 2.17
2702 2997 6.521162 ACGTTTGGAAGGAATGCTTAAAATT 58.479 32.000 0.00 0.00 0.00 1.82
2703 2998 6.096673 ACGTTTGGAAGGAATGCTTAAAAT 57.903 33.333 0.00 0.00 0.00 1.82
2704 2999 5.523438 ACGTTTGGAAGGAATGCTTAAAA 57.477 34.783 0.00 0.00 0.00 1.52
2705 3000 5.523438 AACGTTTGGAAGGAATGCTTAAA 57.477 34.783 0.00 0.00 0.00 1.52
2706 3001 5.523438 AAACGTTTGGAAGGAATGCTTAA 57.477 34.783 13.81 0.00 0.00 1.85
2707 3002 5.523438 AAAACGTTTGGAAGGAATGCTTA 57.477 34.783 15.46 0.00 0.00 3.09
2708 3003 4.400529 AAAACGTTTGGAAGGAATGCTT 57.599 36.364 15.46 0.00 0.00 3.91
2709 3004 4.400529 AAAAACGTTTGGAAGGAATGCT 57.599 36.364 15.46 0.00 0.00 3.79
2738 3033 3.463944 CCACCTCGTGTCAACTAAAGTT 58.536 45.455 0.00 0.00 39.12 2.66
2739 3034 2.805657 GCCACCTCGTGTCAACTAAAGT 60.806 50.000 0.00 0.00 0.00 2.66
2740 3035 1.798813 GCCACCTCGTGTCAACTAAAG 59.201 52.381 0.00 0.00 0.00 1.85
2741 3036 1.139256 TGCCACCTCGTGTCAACTAAA 59.861 47.619 0.00 0.00 0.00 1.85
2742 3037 0.753867 TGCCACCTCGTGTCAACTAA 59.246 50.000 0.00 0.00 0.00 2.24
2743 3038 0.753867 TTGCCACCTCGTGTCAACTA 59.246 50.000 0.00 0.00 26.31 2.24
2744 3039 0.814010 GTTGCCACCTCGTGTCAACT 60.814 55.000 10.51 0.00 45.17 3.16
2745 3040 1.647084 GTTGCCACCTCGTGTCAAC 59.353 57.895 3.30 3.30 43.20 3.18
2746 3041 0.107410 AAGTTGCCACCTCGTGTCAA 60.107 50.000 0.00 0.00 28.86 3.18
2747 3042 0.107410 AAAGTTGCCACCTCGTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
2748 3043 1.798813 CTAAAGTTGCCACCTCGTGTC 59.201 52.381 0.00 0.00 0.00 3.67
2749 3044 1.140252 ACTAAAGTTGCCACCTCGTGT 59.860 47.619 0.00 0.00 0.00 4.49
2750 3045 1.878953 ACTAAAGTTGCCACCTCGTG 58.121 50.000 0.00 0.00 0.00 4.35
2751 3046 2.632987 AACTAAAGTTGCCACCTCGT 57.367 45.000 0.00 0.00 36.80 4.18
2802 3097 9.535878 GGTAAACATGGTAATTTTCTGACAAAA 57.464 29.630 0.00 0.00 0.00 2.44
2803 3098 8.696374 TGGTAAACATGGTAATTTTCTGACAAA 58.304 29.630 0.00 0.00 0.00 2.83
2804 3099 8.239038 TGGTAAACATGGTAATTTTCTGACAA 57.761 30.769 0.00 0.00 0.00 3.18
2805 3100 7.825331 TGGTAAACATGGTAATTTTCTGACA 57.175 32.000 0.00 0.00 0.00 3.58
2806 3101 7.597369 GGTTGGTAAACATGGTAATTTTCTGAC 59.403 37.037 0.00 0.00 38.10 3.51
2807 3102 7.507616 AGGTTGGTAAACATGGTAATTTTCTGA 59.492 33.333 0.00 0.00 38.10 3.27
2808 3103 7.666623 AGGTTGGTAAACATGGTAATTTTCTG 58.333 34.615 0.00 0.00 38.10 3.02
2809 3104 7.507616 TGAGGTTGGTAAACATGGTAATTTTCT 59.492 33.333 0.00 0.00 38.10 2.52
2810 3105 7.597369 GTGAGGTTGGTAAACATGGTAATTTTC 59.403 37.037 0.00 0.00 38.10 2.29
2811 3106 7.438564 GTGAGGTTGGTAAACATGGTAATTTT 58.561 34.615 0.00 0.00 38.10 1.82
2812 3107 6.294286 CGTGAGGTTGGTAAACATGGTAATTT 60.294 38.462 0.00 0.00 38.10 1.82
2813 3108 5.182380 CGTGAGGTTGGTAAACATGGTAATT 59.818 40.000 0.00 0.00 38.10 1.40
2814 3109 4.698304 CGTGAGGTTGGTAAACATGGTAAT 59.302 41.667 0.00 0.00 38.10 1.89
2815 3110 4.066490 CGTGAGGTTGGTAAACATGGTAA 58.934 43.478 0.00 0.00 38.10 2.85
2816 3111 3.071312 ACGTGAGGTTGGTAAACATGGTA 59.929 43.478 0.00 0.00 38.10 3.25
2817 3112 2.158726 ACGTGAGGTTGGTAAACATGGT 60.159 45.455 0.00 0.00 38.10 3.55
2818 3113 2.225491 CACGTGAGGTTGGTAAACATGG 59.775 50.000 10.90 0.00 38.10 3.66
2819 3114 3.135225 TCACGTGAGGTTGGTAAACATG 58.865 45.455 15.76 0.00 38.10 3.21
2820 3115 3.478857 TCACGTGAGGTTGGTAAACAT 57.521 42.857 15.76 0.00 38.10 2.71
2821 3116 2.937799 GTTCACGTGAGGTTGGTAAACA 59.062 45.455 19.11 0.00 38.10 2.83
2822 3117 3.200483 AGTTCACGTGAGGTTGGTAAAC 58.800 45.455 19.11 10.53 35.40 2.01
2823 3118 3.547054 AGTTCACGTGAGGTTGGTAAA 57.453 42.857 19.11 0.00 0.00 2.01
2824 3119 4.669206 TTAGTTCACGTGAGGTTGGTAA 57.331 40.909 19.11 8.43 0.00 2.85
2825 3120 4.669206 TTTAGTTCACGTGAGGTTGGTA 57.331 40.909 19.11 0.00 0.00 3.25
2826 3121 3.547054 TTTAGTTCACGTGAGGTTGGT 57.453 42.857 19.11 3.76 0.00 3.67
2827 3122 5.212194 CAATTTTAGTTCACGTGAGGTTGG 58.788 41.667 19.11 0.29 0.00 3.77
2828 3123 4.675114 GCAATTTTAGTTCACGTGAGGTTG 59.325 41.667 19.11 15.75 0.00 3.77
2829 3124 4.261447 GGCAATTTTAGTTCACGTGAGGTT 60.261 41.667 19.11 10.65 0.00 3.50
2830 3125 3.252458 GGCAATTTTAGTTCACGTGAGGT 59.748 43.478 19.11 12.29 0.00 3.85
2831 3126 3.252215 TGGCAATTTTAGTTCACGTGAGG 59.748 43.478 19.11 2.71 0.00 3.86
2832 3127 4.219033 GTGGCAATTTTAGTTCACGTGAG 58.781 43.478 19.11 4.82 0.00 3.51
2833 3128 3.303461 CGTGGCAATTTTAGTTCACGTGA 60.303 43.478 15.76 15.76 41.71 4.35
2834 3129 2.970609 CGTGGCAATTTTAGTTCACGTG 59.029 45.455 9.94 9.94 41.71 4.49
2835 3130 2.873472 TCGTGGCAATTTTAGTTCACGT 59.127 40.909 12.25 0.00 45.24 4.49
2836 3131 3.529634 TCGTGGCAATTTTAGTTCACG 57.470 42.857 7.25 7.25 46.02 4.35
2837 3132 5.746721 ACTTTTCGTGGCAATTTTAGTTCAC 59.253 36.000 0.00 0.00 0.00 3.18
2838 3133 5.746245 CACTTTTCGTGGCAATTTTAGTTCA 59.254 36.000 0.00 0.00 40.02 3.18
2839 3134 6.197788 CACTTTTCGTGGCAATTTTAGTTC 57.802 37.500 0.00 0.00 40.02 3.01
2852 3147 5.772635 TGGCAACCCAAACACTTTTCGTG 62.773 47.826 0.00 0.00 43.19 4.35
2853 3148 1.134936 GGCAACCCAAACACTTTTCGT 60.135 47.619 0.00 0.00 0.00 3.85
2854 3149 1.134965 TGGCAACCCAAACACTTTTCG 60.135 47.619 0.00 0.00 38.46 3.46
2855 3150 2.682155 TGGCAACCCAAACACTTTTC 57.318 45.000 0.00 0.00 38.46 2.29
2856 3151 2.916640 CATGGCAACCCAAACACTTTT 58.083 42.857 0.00 0.00 46.14 2.27
2857 3152 1.474855 GCATGGCAACCCAAACACTTT 60.475 47.619 0.00 0.00 46.14 2.66
2858 3153 0.106521 GCATGGCAACCCAAACACTT 59.893 50.000 0.00 0.00 46.14 3.16
2859 3154 0.760189 AGCATGGCAACCCAAACACT 60.760 50.000 0.00 0.00 46.14 3.55
2860 3155 0.106521 AAGCATGGCAACCCAAACAC 59.893 50.000 0.00 0.00 46.14 3.32
2861 3156 1.709578 TAAGCATGGCAACCCAAACA 58.290 45.000 0.00 0.00 46.14 2.83
2862 3157 2.829741 TTAAGCATGGCAACCCAAAC 57.170 45.000 0.00 0.00 46.14 2.93
2863 3158 3.845781 TTTTAAGCATGGCAACCCAAA 57.154 38.095 0.00 0.00 46.14 3.28
2864 3159 3.307339 GGATTTTAAGCATGGCAACCCAA 60.307 43.478 0.00 0.00 46.14 4.12
2866 3161 2.235898 TGGATTTTAAGCATGGCAACCC 59.764 45.455 0.00 0.00 0.00 4.11
2867 3162 3.608316 TGGATTTTAAGCATGGCAACC 57.392 42.857 0.00 0.00 0.00 3.77
2868 3163 5.412286 ACATTTGGATTTTAAGCATGGCAAC 59.588 36.000 0.00 0.00 0.00 4.17
2869 3164 5.558818 ACATTTGGATTTTAAGCATGGCAA 58.441 33.333 0.00 0.00 0.00 4.52
2870 3165 5.163281 ACATTTGGATTTTAAGCATGGCA 57.837 34.783 0.00 0.00 0.00 4.92
2871 3166 5.220453 CGAACATTTGGATTTTAAGCATGGC 60.220 40.000 0.00 0.00 0.00 4.40
2872 3167 5.291614 CCGAACATTTGGATTTTAAGCATGG 59.708 40.000 0.00 0.00 33.23 3.66
2873 3168 5.291614 CCCGAACATTTGGATTTTAAGCATG 59.708 40.000 0.00 0.00 33.23 4.06
2874 3169 5.186797 TCCCGAACATTTGGATTTTAAGCAT 59.813 36.000 0.00 0.00 33.23 3.79
2875 3170 4.524714 TCCCGAACATTTGGATTTTAAGCA 59.475 37.500 0.00 0.00 33.23 3.91
2876 3171 5.066968 TCCCGAACATTTGGATTTTAAGC 57.933 39.130 0.00 0.00 33.23 3.09
2883 3178 7.436118 CAATGATAAATCCCGAACATTTGGAT 58.564 34.615 0.00 0.00 40.60 3.41
2884 3179 6.183360 CCAATGATAAATCCCGAACATTTGGA 60.183 38.462 0.00 0.00 33.23 3.53
2885 3180 5.984926 CCAATGATAAATCCCGAACATTTGG 59.015 40.000 0.00 0.00 0.00 3.28
2886 3181 5.463061 GCCAATGATAAATCCCGAACATTTG 59.537 40.000 0.00 0.00 0.00 2.32
2887 3182 5.453198 GGCCAATGATAAATCCCGAACATTT 60.453 40.000 0.00 0.00 0.00 2.32
2888 3183 4.039124 GGCCAATGATAAATCCCGAACATT 59.961 41.667 0.00 0.00 0.00 2.71
2889 3184 3.573967 GGCCAATGATAAATCCCGAACAT 59.426 43.478 0.00 0.00 0.00 2.71
2890 3185 2.955660 GGCCAATGATAAATCCCGAACA 59.044 45.455 0.00 0.00 0.00 3.18
2891 3186 3.222603 AGGCCAATGATAAATCCCGAAC 58.777 45.455 5.01 0.00 0.00 3.95
2892 3187 3.593442 AGGCCAATGATAAATCCCGAA 57.407 42.857 5.01 0.00 0.00 4.30
2893 3188 3.593442 AAGGCCAATGATAAATCCCGA 57.407 42.857 5.01 0.00 0.00 5.14
2894 3189 5.982890 ATTAAGGCCAATGATAAATCCCG 57.017 39.130 5.01 0.00 0.00 5.14
2895 3190 9.710900 CTTAAATTAAGGCCAATGATAAATCCC 57.289 33.333 5.01 0.00 32.17 3.85
3019 3315 6.481976 ACGTGACTTAGAATCACACAATTGAA 59.518 34.615 13.59 0.00 45.64 2.69
3088 3467 8.734386 CCTCCATTAAGGCATACTCATATTTTC 58.266 37.037 0.00 0.00 37.29 2.29
3100 3479 7.684619 AGTTATATACTCCCTCCATTAAGGCAT 59.315 37.037 0.00 0.00 34.88 4.40
3266 3686 4.316823 TCCAGCCAGGACTCCGGT 62.317 66.667 0.00 0.00 43.07 5.28
3677 4097 0.798776 CAAGGGCGACACTCAATCAC 59.201 55.000 0.00 0.00 0.00 3.06
3679 4099 1.796796 GCAAGGGCGACACTCAATC 59.203 57.895 0.00 0.00 0.00 2.67
3680 4100 3.987404 GCAAGGGCGACACTCAAT 58.013 55.556 0.00 0.00 0.00 2.57
3773 4197 5.069648 CCTTACTCATAGACAAGCAGATCCA 59.930 44.000 0.00 0.00 0.00 3.41
3948 4383 3.680786 GTTCAAAGTGGGGGCGGC 61.681 66.667 0.00 0.00 0.00 6.53
4114 4551 7.696453 CGAGTATTTGGAAAAATGTACATCACC 59.304 37.037 9.23 10.50 0.00 4.02
4117 4554 8.447833 TGACGAGTATTTGGAAAAATGTACATC 58.552 33.333 9.23 0.00 0.00 3.06
4123 4560 9.410556 AGAATTTGACGAGTATTTGGAAAAATG 57.589 29.630 0.00 0.00 0.00 2.32
4139 4576 9.611284 TCAATGTCTATCAAAAAGAATTTGACG 57.389 29.630 5.82 1.86 39.02 4.35
4245 4687 7.346695 TGTTCACGTATTTAGAAAGTTTTCCG 58.653 34.615 1.16 0.32 37.92 4.30
4298 4745 8.864069 TTTCAAATGTACGTTCATGACATTTT 57.136 26.923 18.94 4.09 46.49 1.82
4303 4750 6.842163 AGGATTTCAAATGTACGTTCATGAC 58.158 36.000 8.54 0.00 0.00 3.06
4312 4759 7.881775 ATAGGTCCAAGGATTTCAAATGTAC 57.118 36.000 0.00 0.00 0.00 2.90
4315 4762 9.807649 CTAAAATAGGTCCAAGGATTTCAAATG 57.192 33.333 0.00 0.00 0.00 2.32
4340 4787 7.781056 ACCATTTAGAAAATGTTTGTGACACT 58.219 30.769 7.20 0.00 42.04 3.55
4343 4790 9.906660 TCATACCATTTAGAAAATGTTTGTGAC 57.093 29.630 10.54 0.00 0.00 3.67
4392 4841 6.746822 TGTATGCAATGTAAAGAAAATGCTCG 59.253 34.615 0.00 0.00 34.97 5.03
4393 4842 8.464770 TTGTATGCAATGTAAAGAAAATGCTC 57.535 30.769 0.00 0.00 34.97 4.26
4412 4861 8.984482 TTTTCATGCGTTTCAAAATTTGTATG 57.016 26.923 5.56 2.72 0.00 2.39
4421 4870 9.994432 ACATTTAAATTTTTCATGCGTTTCAAA 57.006 22.222 0.00 0.00 0.00 2.69
4425 4874 9.596677 CATGACATTTAAATTTTTCATGCGTTT 57.403 25.926 20.69 1.68 35.37 3.60
4483 4933 3.997762 TGCGGTGTAGAAGTTTGTGTAT 58.002 40.909 0.00 0.00 0.00 2.29
4485 4935 2.319136 TGCGGTGTAGAAGTTTGTGT 57.681 45.000 0.00 0.00 0.00 3.72
4488 4938 3.067106 ACTCATGCGGTGTAGAAGTTTG 58.933 45.455 0.00 0.00 0.00 2.93
4517 4972 6.516739 TTTTTAATTCACCACGCATATGGA 57.483 33.333 4.56 0.00 43.02 3.41
4587 5052 6.183360 GCTGGTTCTTTCTCCTTTTTCTTTCT 60.183 38.462 0.00 0.00 0.00 2.52
4597 5062 1.416401 TGTTCGCTGGTTCTTTCTCCT 59.584 47.619 0.00 0.00 0.00 3.69
4598 5063 1.531578 GTGTTCGCTGGTTCTTTCTCC 59.468 52.381 0.00 0.00 0.00 3.71
4599 5064 1.531578 GGTGTTCGCTGGTTCTTTCTC 59.468 52.381 0.00 0.00 0.00 2.87
4601 5066 0.591659 GGGTGTTCGCTGGTTCTTTC 59.408 55.000 0.00 0.00 0.00 2.62
4602 5067 0.822121 GGGGTGTTCGCTGGTTCTTT 60.822 55.000 0.00 0.00 0.00 2.52
4603 5068 1.228154 GGGGTGTTCGCTGGTTCTT 60.228 57.895 0.00 0.00 0.00 2.52
4604 5069 2.147387 AGGGGTGTTCGCTGGTTCT 61.147 57.895 0.00 0.00 37.27 3.01
4605 5070 2.430367 AGGGGTGTTCGCTGGTTC 59.570 61.111 0.00 0.00 37.27 3.62
4610 5075 1.258445 CCTACTCAGGGGTGTTCGCT 61.258 60.000 0.00 0.00 38.41 4.93
4624 5099 1.774856 GTACCCATTGCCATCCCTACT 59.225 52.381 0.00 0.00 0.00 2.57
4640 5115 3.799917 CGGTTACGTGGATAATGGGTACC 60.800 52.174 2.17 2.17 42.52 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.