Multiple sequence alignment - TraesCS3D01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G138000 chr3D 100.000 4820 0 0 1 4820 96400864 96405683 0.000000e+00 8901
1 TraesCS3D01G138000 chr3D 76.725 1594 300 39 1143 2722 516667215 516665679 0.000000e+00 822
2 TraesCS3D01G138000 chr3D 82.609 391 61 7 1270 1657 516418770 516419156 5.980000e-89 339
3 TraesCS3D01G138000 chr3B 93.555 1567 71 7 1084 2644 147552985 147554527 0.000000e+00 2307
4 TraesCS3D01G138000 chr3B 91.050 1486 61 20 2775 4255 147557933 147559351 0.000000e+00 1941
5 TraesCS3D01G138000 chr3B 76.725 1594 293 42 1143 2719 681006432 681007964 0.000000e+00 817
6 TraesCS3D01G138000 chr3B 91.892 296 17 1 4239 4527 147560684 147560979 1.620000e-109 407
7 TraesCS3D01G138000 chr3B 91.186 295 24 2 4526 4820 147561083 147561375 2.700000e-107 399
8 TraesCS3D01G138000 chr3B 94.690 226 8 2 888 1110 147552746 147552970 9.930000e-92 348
9 TraesCS3D01G138000 chr3B 100.000 103 0 0 2635 2737 147557819 147557921 1.770000e-44 191
10 TraesCS3D01G138000 chr3A 92.404 1356 59 15 2766 4119 114435249 114436562 0.000000e+00 1893
11 TraesCS3D01G138000 chr3A 92.685 1203 57 17 1042 2224 114433189 114434380 0.000000e+00 1705
12 TraesCS3D01G138000 chr3A 92.562 726 43 3 4105 4820 114438182 114438906 0.000000e+00 1031
13 TraesCS3D01G138000 chr3A 85.714 826 89 21 10 814 738604305 738603488 0.000000e+00 845
14 TraesCS3D01G138000 chr3A 85.437 824 95 18 10 814 738683242 738682425 0.000000e+00 833
15 TraesCS3D01G138000 chr3A 85.369 827 91 22 10 814 738507945 738507127 0.000000e+00 830
16 TraesCS3D01G138000 chr3A 91.111 540 24 8 2222 2737 114434715 114435254 0.000000e+00 710
17 TraesCS3D01G138000 chr3A 80.905 398 61 13 1143 1539 651644035 651643652 2.820000e-77 300
18 TraesCS3D01G138000 chr1D 89.880 830 66 5 1 814 409013700 409014527 0.000000e+00 1051
19 TraesCS3D01G138000 chr5A 89.461 835 56 7 9 814 537362981 537363812 0.000000e+00 1026
20 TraesCS3D01G138000 chr5A 78.356 827 139 27 10 814 99022833 99022025 2.590000e-137 499
21 TraesCS3D01G138000 chr5D 89.117 827 68 7 3 809 520102437 520103261 0.000000e+00 1009
22 TraesCS3D01G138000 chr4A 87.515 841 75 8 1 813 647633828 647632990 0.000000e+00 944
23 TraesCS3D01G138000 chr4A 87.204 844 76 8 1 814 647644826 647643985 0.000000e+00 931
24 TraesCS3D01G138000 chr4A 87.055 842 79 8 1 814 647601960 647601121 0.000000e+00 924
25 TraesCS3D01G138000 chr4A 87.485 823 72 12 3 796 464548177 464547357 0.000000e+00 920
26 TraesCS3D01G138000 chr4A 84.988 826 99 19 1 809 608055642 608056459 0.000000e+00 815
27 TraesCS3D01G138000 chr4A 73.064 594 136 18 2122 2705 557966995 557966416 6.370000e-44 189
28 TraesCS3D01G138000 chr4A 82.734 139 14 3 4247 4378 556251716 556251851 1.100000e-21 115
29 TraesCS3D01G138000 chr7B 84.587 824 102 22 1 809 742142452 742143265 0.000000e+00 795
30 TraesCS3D01G138000 chr7D 86.457 731 84 11 2 723 41345561 41346285 0.000000e+00 787
31 TraesCS3D01G138000 chr7D 75.281 801 152 31 46 821 634340812 634340033 1.660000e-89 340
32 TraesCS3D01G138000 chr6B 78.597 827 138 26 10 815 561641061 561641869 1.200000e-140 510
33 TraesCS3D01G138000 chr6B 85.845 438 31 10 407 814 493116101 493116537 2.060000e-118 436
34 TraesCS3D01G138000 chr7A 78.102 822 142 24 14 814 679315339 679314535 2.020000e-133 486
35 TraesCS3D01G138000 chr7A 78.453 362 74 4 1365 1724 6531909 6532268 2.900000e-57 233
36 TraesCS3D01G138000 chr4D 81.797 434 76 3 1321 1753 41920259 41920690 1.280000e-95 361
37 TraesCS3D01G138000 chr4D 74.550 444 97 13 2071 2508 41921011 41921444 3.830000e-41 180
38 TraesCS3D01G138000 chr2D 79.947 374 75 0 1372 1745 587370705 587370332 4.750000e-70 276
39 TraesCS3D01G138000 chr2A 79.003 381 74 6 1371 1749 717557101 717556725 6.190000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G138000 chr3D 96400864 96405683 4819 False 8901.000000 8901 100.000000 1 4820 1 chr3D.!!$F1 4819
1 TraesCS3D01G138000 chr3D 516665679 516667215 1536 True 822.000000 822 76.725000 1143 2722 1 chr3D.!!$R1 1579
2 TraesCS3D01G138000 chr3B 147552746 147561375 8629 False 932.166667 2307 93.728833 888 4820 6 chr3B.!!$F2 3932
3 TraesCS3D01G138000 chr3B 681006432 681007964 1532 False 817.000000 817 76.725000 1143 2719 1 chr3B.!!$F1 1576
4 TraesCS3D01G138000 chr3A 114433189 114438906 5717 False 1334.750000 1893 92.190500 1042 4820 4 chr3A.!!$F1 3778
5 TraesCS3D01G138000 chr3A 738603488 738604305 817 True 845.000000 845 85.714000 10 814 1 chr3A.!!$R3 804
6 TraesCS3D01G138000 chr3A 738682425 738683242 817 True 833.000000 833 85.437000 10 814 1 chr3A.!!$R4 804
7 TraesCS3D01G138000 chr3A 738507127 738507945 818 True 830.000000 830 85.369000 10 814 1 chr3A.!!$R2 804
8 TraesCS3D01G138000 chr1D 409013700 409014527 827 False 1051.000000 1051 89.880000 1 814 1 chr1D.!!$F1 813
9 TraesCS3D01G138000 chr5A 537362981 537363812 831 False 1026.000000 1026 89.461000 9 814 1 chr5A.!!$F1 805
10 TraesCS3D01G138000 chr5A 99022025 99022833 808 True 499.000000 499 78.356000 10 814 1 chr5A.!!$R1 804
11 TraesCS3D01G138000 chr5D 520102437 520103261 824 False 1009.000000 1009 89.117000 3 809 1 chr5D.!!$F1 806
12 TraesCS3D01G138000 chr4A 647632990 647633828 838 True 944.000000 944 87.515000 1 813 1 chr4A.!!$R4 812
13 TraesCS3D01G138000 chr4A 647643985 647644826 841 True 931.000000 931 87.204000 1 814 1 chr4A.!!$R5 813
14 TraesCS3D01G138000 chr4A 647601121 647601960 839 True 924.000000 924 87.055000 1 814 1 chr4A.!!$R3 813
15 TraesCS3D01G138000 chr4A 464547357 464548177 820 True 920.000000 920 87.485000 3 796 1 chr4A.!!$R1 793
16 TraesCS3D01G138000 chr4A 608055642 608056459 817 False 815.000000 815 84.988000 1 809 1 chr4A.!!$F2 808
17 TraesCS3D01G138000 chr7B 742142452 742143265 813 False 795.000000 795 84.587000 1 809 1 chr7B.!!$F1 808
18 TraesCS3D01G138000 chr7D 41345561 41346285 724 False 787.000000 787 86.457000 2 723 1 chr7D.!!$F1 721
19 TraesCS3D01G138000 chr7D 634340033 634340812 779 True 340.000000 340 75.281000 46 821 1 chr7D.!!$R1 775
20 TraesCS3D01G138000 chr6B 561641061 561641869 808 False 510.000000 510 78.597000 10 815 1 chr6B.!!$F2 805
21 TraesCS3D01G138000 chr7A 679314535 679315339 804 True 486.000000 486 78.102000 14 814 1 chr7A.!!$R1 800
22 TraesCS3D01G138000 chr4D 41920259 41921444 1185 False 270.500000 361 78.173500 1321 2508 2 chr4D.!!$F1 1187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 931 0.034896 CGCCGGGCAAAGGATATACT 59.965 55.0 20.71 0.0 0.00 2.12 F
1034 1078 0.328258 CCGGTGAATCCCCTCAAACT 59.672 55.0 0.00 0.0 0.00 2.66 F
1578 1675 0.512952 CCGCTTCTTCAACCTTGACG 59.487 55.0 0.00 0.0 36.83 4.35 F
2985 6766 0.108138 CTCGCAATCCCCTCGTTTCT 60.108 55.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 2839 0.794229 CGCATGTGTCGATTGGTTGC 60.794 55.000 0.00 0.0 0.00 4.17 R
2967 6748 0.391130 CAGAAACGAGGGGATTGCGA 60.391 55.000 0.00 0.0 0.00 5.10 R
3303 7085 0.322098 CGCACCCCATGGTTCTTACA 60.322 55.000 11.73 0.0 44.75 2.41 R
4500 11286 2.334977 TCAACTTCTGCTCCCCAGTTA 58.665 47.619 0.00 0.0 42.38 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.153901 CATGGAGGTTACGACGCGT 60.154 57.895 13.85 13.85 44.35 6.01
83 84 0.734942 CATGGAGGTTACGACGCGTT 60.735 55.000 15.53 0.00 41.54 4.84
191 192 1.447314 CCAAGGAGGGTAACGACGC 60.447 63.158 0.00 0.00 38.78 5.19
276 277 1.226746 CCACAAAACCTCCGACTGTC 58.773 55.000 0.00 0.00 0.00 3.51
295 298 2.556459 CCGGATCCGACAGCGAGAT 61.556 63.158 35.42 0.00 42.83 2.75
308 311 0.108804 GCGAGATGAACCGAGACCAA 60.109 55.000 0.00 0.00 0.00 3.67
371 374 1.841302 ATCAAGAAGGACAGCCGCCA 61.841 55.000 0.00 0.00 39.96 5.69
458 462 2.877691 GACAACATCCAAGCGCCC 59.122 61.111 2.29 0.00 0.00 6.13
465 469 3.042733 ATCCAAGCGCCCGATCCAA 62.043 57.895 2.29 0.00 0.00 3.53
481 487 0.178981 CCAAATGGATCCGGCCTGAT 60.179 55.000 9.74 9.74 37.39 2.90
636 660 2.893398 CTAGCCCGACGCCTCTTT 59.107 61.111 0.00 0.00 38.78 2.52
818 862 3.839432 CGAGGGGGACGAGAAGGC 61.839 72.222 0.00 0.00 0.00 4.35
819 863 2.683933 GAGGGGGACGAGAAGGCA 60.684 66.667 0.00 0.00 0.00 4.75
820 864 3.003763 AGGGGGACGAGAAGGCAC 61.004 66.667 0.00 0.00 0.00 5.01
821 865 4.452733 GGGGGACGAGAAGGCACG 62.453 72.222 0.00 0.00 25.04 5.34
822 866 3.692406 GGGGACGAGAAGGCACGT 61.692 66.667 0.00 0.00 43.88 4.49
823 867 2.342648 GGGACGAGAAGGCACGTT 59.657 61.111 0.00 0.00 41.33 3.99
824 868 1.588082 GGGACGAGAAGGCACGTTA 59.412 57.895 0.00 0.00 41.33 3.18
825 869 0.458025 GGGACGAGAAGGCACGTTAG 60.458 60.000 0.00 0.00 41.33 2.34
826 870 1.077089 GGACGAGAAGGCACGTTAGC 61.077 60.000 0.00 0.00 41.33 3.09
835 879 3.748021 GCACGTTAGCCTCAAACAC 57.252 52.632 0.00 0.00 0.00 3.32
836 880 0.941542 GCACGTTAGCCTCAAACACA 59.058 50.000 0.00 0.00 0.00 3.72
837 881 1.332375 GCACGTTAGCCTCAAACACAA 59.668 47.619 0.00 0.00 0.00 3.33
838 882 2.031157 GCACGTTAGCCTCAAACACAAT 60.031 45.455 0.00 0.00 0.00 2.71
839 883 3.810373 CACGTTAGCCTCAAACACAATC 58.190 45.455 0.00 0.00 0.00 2.67
840 884 3.498397 CACGTTAGCCTCAAACACAATCT 59.502 43.478 0.00 0.00 0.00 2.40
841 885 4.688879 CACGTTAGCCTCAAACACAATCTA 59.311 41.667 0.00 0.00 0.00 1.98
842 886 4.929808 ACGTTAGCCTCAAACACAATCTAG 59.070 41.667 0.00 0.00 0.00 2.43
843 887 5.168569 CGTTAGCCTCAAACACAATCTAGA 58.831 41.667 0.00 0.00 0.00 2.43
844 888 5.637810 CGTTAGCCTCAAACACAATCTAGAA 59.362 40.000 0.00 0.00 0.00 2.10
845 889 6.183360 CGTTAGCCTCAAACACAATCTAGAAG 60.183 42.308 0.00 0.00 0.00 2.85
846 890 4.583871 AGCCTCAAACACAATCTAGAAGG 58.416 43.478 0.00 0.00 0.00 3.46
847 891 4.287067 AGCCTCAAACACAATCTAGAAGGA 59.713 41.667 0.00 0.00 0.00 3.36
848 892 5.045286 AGCCTCAAACACAATCTAGAAGGAT 60.045 40.000 0.00 0.00 0.00 3.24
849 893 5.649831 GCCTCAAACACAATCTAGAAGGATT 59.350 40.000 0.00 0.00 36.49 3.01
884 928 2.113139 CCGCCGGGCAAAGGATAT 59.887 61.111 20.71 0.00 0.00 1.63
885 929 1.373435 CCGCCGGGCAAAGGATATA 59.627 57.895 20.71 0.00 0.00 0.86
886 930 0.953960 CCGCCGGGCAAAGGATATAC 60.954 60.000 20.71 0.00 0.00 1.47
887 931 0.034896 CGCCGGGCAAAGGATATACT 59.965 55.000 20.71 0.00 0.00 2.12
888 932 1.809684 GCCGGGCAAAGGATATACTC 58.190 55.000 15.62 0.00 0.00 2.59
889 933 1.610886 GCCGGGCAAAGGATATACTCC 60.611 57.143 15.62 0.00 45.33 3.85
928 972 4.951715 TGCTGATTCAAATGCCTAAGATGT 59.048 37.500 0.00 0.00 0.00 3.06
952 996 1.920325 CTGAGCCTCCACCTTCCCA 60.920 63.158 0.00 0.00 0.00 4.37
968 1012 6.096001 CACCTTCCCAAAATAGAATCTCAAGG 59.904 42.308 0.00 0.00 34.12 3.61
1024 1068 4.160635 CGCCAACGCCGGTGAATC 62.161 66.667 24.59 6.63 38.98 2.52
1032 1076 1.001393 GCCGGTGAATCCCCTCAAA 60.001 57.895 1.90 0.00 0.00 2.69
1033 1077 1.313091 GCCGGTGAATCCCCTCAAAC 61.313 60.000 1.90 0.00 0.00 2.93
1034 1078 0.328258 CCGGTGAATCCCCTCAAACT 59.672 55.000 0.00 0.00 0.00 2.66
1035 1079 1.453155 CGGTGAATCCCCTCAAACTG 58.547 55.000 0.00 0.00 0.00 3.16
1036 1080 1.271379 CGGTGAATCCCCTCAAACTGT 60.271 52.381 0.00 0.00 0.00 3.55
1037 1081 2.162681 GGTGAATCCCCTCAAACTGTG 58.837 52.381 0.00 0.00 0.00 3.66
1038 1082 1.541588 GTGAATCCCCTCAAACTGTGC 59.458 52.381 0.00 0.00 0.00 4.57
1039 1083 1.425066 TGAATCCCCTCAAACTGTGCT 59.575 47.619 0.00 0.00 0.00 4.40
1060 1106 4.275810 CTCCACCATTCACCATCTCAAAT 58.724 43.478 0.00 0.00 0.00 2.32
1110 1156 3.111838 CTCTGCGCTGTGTAATCTACTG 58.888 50.000 9.73 0.00 0.00 2.74
1111 1157 2.492088 TCTGCGCTGTGTAATCTACTGT 59.508 45.455 9.73 0.00 0.00 3.55
1112 1158 3.692593 TCTGCGCTGTGTAATCTACTGTA 59.307 43.478 9.73 0.00 0.00 2.74
1113 1159 4.338400 TCTGCGCTGTGTAATCTACTGTAT 59.662 41.667 9.73 0.00 0.00 2.29
1114 1160 4.607955 TGCGCTGTGTAATCTACTGTATC 58.392 43.478 9.73 0.00 0.00 2.24
1115 1161 4.338400 TGCGCTGTGTAATCTACTGTATCT 59.662 41.667 9.73 0.00 0.00 1.98
1135 1223 6.683974 ATCTCAGGTTAAAATTCACCATCG 57.316 37.500 0.00 0.00 35.25 3.84
1169 1257 1.688735 TGGGCGAATCAGATCTTCGAT 59.311 47.619 17.35 4.77 46.36 3.59
1171 1259 2.478134 GGGCGAATCAGATCTTCGATTG 59.522 50.000 17.35 9.10 46.36 2.67
1173 1261 3.384668 GCGAATCAGATCTTCGATTGGA 58.615 45.455 17.35 0.00 46.36 3.53
1175 1263 4.318404 GCGAATCAGATCTTCGATTGGAAC 60.318 45.833 17.35 2.10 46.36 3.62
1176 1264 4.085363 CGAATCAGATCTTCGATTGGAACG 60.085 45.833 11.86 6.61 46.36 3.95
1177 1265 2.540515 TCAGATCTTCGATTGGAACGC 58.459 47.619 0.00 0.00 0.00 4.84
1289 1377 2.512515 GTGCTGGCCTCGGATGAC 60.513 66.667 3.32 0.00 0.00 3.06
1578 1675 0.512952 CCGCTTCTTCAACCTTGACG 59.487 55.000 0.00 0.00 36.83 4.35
1676 1773 1.201181 CTCCAGAGAGACCAAGACACG 59.799 57.143 0.00 0.00 43.39 4.49
1884 1981 1.443872 GCGTTCCGTCGTCTGATGT 60.444 57.895 0.00 0.00 0.00 3.06
1886 1983 1.674611 CGTTCCGTCGTCTGATGTGC 61.675 60.000 0.00 0.00 0.00 4.57
2015 2112 3.214328 GCACCATCCTACAACTAATGGG 58.786 50.000 5.33 0.00 42.45 4.00
2047 2144 4.424711 GATCAACCCGCCCCTGCA 62.425 66.667 0.00 0.00 37.32 4.41
2117 2235 3.706594 CAGATAAACTCTACAGGGGCTCA 59.293 47.826 0.00 0.00 31.13 4.26
2384 2839 1.669115 CAGGACTGGTGCTTGGTCG 60.669 63.158 0.00 0.00 0.00 4.79
2536 2991 5.943416 CCACTCCCTATTTATGTTGTCACAA 59.057 40.000 0.00 0.00 36.16 3.33
2557 3012 8.154203 TCACAACTGTTCCTAGATCATGTTAAA 58.846 33.333 0.00 0.00 0.00 1.52
2591 3071 6.636454 AATACATTCTCCTTGTGACCCTTA 57.364 37.500 0.00 0.00 0.00 2.69
2737 6518 8.534333 TGTACTAGCAACTCAAAGTGATTAAG 57.466 34.615 0.00 0.00 0.00 1.85
2738 6519 7.602644 TGTACTAGCAACTCAAAGTGATTAAGG 59.397 37.037 0.00 0.00 0.00 2.69
2739 6520 6.769512 ACTAGCAACTCAAAGTGATTAAGGA 58.230 36.000 0.00 0.00 0.00 3.36
2740 6521 7.398024 ACTAGCAACTCAAAGTGATTAAGGAT 58.602 34.615 0.00 0.00 0.00 3.24
2743 6524 7.955918 AGCAACTCAAAGTGATTAAGGATTTT 58.044 30.769 0.00 0.00 0.00 1.82
2744 6525 8.424133 AGCAACTCAAAGTGATTAAGGATTTTT 58.576 29.630 0.00 0.00 0.00 1.94
2766 6547 6.425577 TTTTTCTTCTTTTCGAAACGGAGA 57.574 33.333 18.70 18.70 0.00 3.71
2767 6548 6.613755 TTTTCTTCTTTTCGAAACGGAGAT 57.386 33.333 22.06 0.00 0.00 2.75
2768 6549 6.613755 TTTCTTCTTTTCGAAACGGAGATT 57.386 33.333 22.06 0.00 0.00 2.40
2769 6550 7.718272 TTTCTTCTTTTCGAAACGGAGATTA 57.282 32.000 22.06 12.84 0.00 1.75
2770 6551 7.718272 TTCTTCTTTTCGAAACGGAGATTAA 57.282 32.000 22.06 8.42 0.00 1.40
2771 6552 7.718272 TCTTCTTTTCGAAACGGAGATTAAA 57.282 32.000 18.70 0.00 0.00 1.52
2772 6553 7.793902 TCTTCTTTTCGAAACGGAGATTAAAG 58.206 34.615 18.70 10.91 0.00 1.85
2773 6554 7.654520 TCTTCTTTTCGAAACGGAGATTAAAGA 59.345 33.333 18.70 12.67 0.00 2.52
2836 6617 1.742761 AGCAACCAACCATCGATCTG 58.257 50.000 0.00 0.00 0.00 2.90
2839 6620 2.009774 CAACCAACCATCGATCTGACC 58.990 52.381 0.00 0.00 0.00 4.02
2854 6635 1.277273 CTGACCTGGACAGATGCTCAA 59.723 52.381 19.38 0.00 37.54 3.02
2869 6650 7.443575 ACAGATGCTCAATCCTCACAATAATAC 59.556 37.037 0.00 0.00 35.72 1.89
2874 6655 4.814234 TCAATCCTCACAATAATACGTGCC 59.186 41.667 0.00 0.00 33.03 5.01
2877 6658 3.131396 CCTCACAATAATACGTGCCCTC 58.869 50.000 0.00 0.00 33.03 4.30
2949 6730 6.259608 CCTCCTAATCTACAAGCAGTTTGATG 59.740 42.308 3.67 0.00 39.21 3.07
2967 6748 3.646162 TGATGAGGTGTTCTTGTGGTACT 59.354 43.478 0.00 0.00 0.00 2.73
2980 6761 1.067582 GGTACTCGCAATCCCCTCG 59.932 63.158 0.00 0.00 0.00 4.63
2981 6762 1.673808 GGTACTCGCAATCCCCTCGT 61.674 60.000 0.00 0.00 0.00 4.18
2982 6763 0.175073 GTACTCGCAATCCCCTCGTT 59.825 55.000 0.00 0.00 0.00 3.85
2983 6764 0.899720 TACTCGCAATCCCCTCGTTT 59.100 50.000 0.00 0.00 0.00 3.60
2984 6765 0.391263 ACTCGCAATCCCCTCGTTTC 60.391 55.000 0.00 0.00 0.00 2.78
2985 6766 0.108138 CTCGCAATCCCCTCGTTTCT 60.108 55.000 0.00 0.00 0.00 2.52
2986 6767 0.391130 TCGCAATCCCCTCGTTTCTG 60.391 55.000 0.00 0.00 0.00 3.02
2987 6768 0.673644 CGCAATCCCCTCGTTTCTGT 60.674 55.000 0.00 0.00 0.00 3.41
2988 6769 1.404986 CGCAATCCCCTCGTTTCTGTA 60.405 52.381 0.00 0.00 0.00 2.74
2989 6770 2.007608 GCAATCCCCTCGTTTCTGTAC 58.992 52.381 0.00 0.00 0.00 2.90
2990 6771 2.354805 GCAATCCCCTCGTTTCTGTACT 60.355 50.000 0.00 0.00 0.00 2.73
2991 6772 3.262420 CAATCCCCTCGTTTCTGTACTG 58.738 50.000 0.00 0.00 0.00 2.74
2992 6773 2.297698 TCCCCTCGTTTCTGTACTGA 57.702 50.000 0.00 0.00 0.00 3.41
2993 6774 1.891150 TCCCCTCGTTTCTGTACTGAC 59.109 52.381 1.37 0.00 0.00 3.51
2994 6775 1.402456 CCCCTCGTTTCTGTACTGACG 60.402 57.143 1.37 4.95 36.89 4.35
2995 6776 1.337821 CCTCGTTTCTGTACTGACGC 58.662 55.000 1.37 0.00 35.63 5.19
2996 6777 1.335597 CCTCGTTTCTGTACTGACGCA 60.336 52.381 1.37 0.00 35.63 5.24
2999 6780 4.163458 TCGTTTCTGTACTGACGCAATA 57.837 40.909 1.37 0.00 35.63 1.90
3006 6787 9.459640 GTTTCTGTACTGACGCAATATCTATTA 57.540 33.333 1.37 0.00 0.00 0.98
3046 6827 2.623416 CTCACCCCTTTCTTGTTGTTCC 59.377 50.000 0.00 0.00 0.00 3.62
3050 6831 2.965147 CCCCTTTCTTGTTGTTCCACAT 59.035 45.455 0.00 0.00 0.00 3.21
3071 6852 6.819649 CACATGACCAATCAGCCAAATAATTT 59.180 34.615 0.00 0.00 38.57 1.82
3098 6879 4.142403 GGAATCGATTGATTGTTCTTGCCA 60.142 41.667 16.96 0.00 44.79 4.92
3099 6880 3.829886 TCGATTGATTGTTCTTGCCAC 57.170 42.857 0.00 0.00 0.00 5.01
3100 6881 3.145286 TCGATTGATTGTTCTTGCCACA 58.855 40.909 0.00 0.00 0.00 4.17
3101 6882 3.758023 TCGATTGATTGTTCTTGCCACAT 59.242 39.130 0.00 0.00 0.00 3.21
3102 6883 4.100529 CGATTGATTGTTCTTGCCACATC 58.899 43.478 0.00 0.00 0.00 3.06
3103 6884 4.379708 CGATTGATTGTTCTTGCCACATCA 60.380 41.667 0.00 0.00 0.00 3.07
3105 6886 4.241590 TGATTGTTCTTGCCACATCAAC 57.758 40.909 0.00 0.00 0.00 3.18
3107 6888 2.363306 TGTTCTTGCCACATCAACCT 57.637 45.000 0.00 0.00 0.00 3.50
3108 6889 2.229792 TGTTCTTGCCACATCAACCTC 58.770 47.619 0.00 0.00 0.00 3.85
3109 6890 2.158623 TGTTCTTGCCACATCAACCTCT 60.159 45.455 0.00 0.00 0.00 3.69
3110 6891 3.072330 TGTTCTTGCCACATCAACCTCTA 59.928 43.478 0.00 0.00 0.00 2.43
3111 6892 3.616956 TCTTGCCACATCAACCTCTAG 57.383 47.619 0.00 0.00 0.00 2.43
3114 6895 4.962362 TCTTGCCACATCAACCTCTAGATA 59.038 41.667 0.00 0.00 0.00 1.98
3116 6897 4.030216 TGCCACATCAACCTCTAGATACA 58.970 43.478 0.00 0.00 0.00 2.29
3117 6898 4.655649 TGCCACATCAACCTCTAGATACAT 59.344 41.667 0.00 0.00 0.00 2.29
3118 6899 4.993584 GCCACATCAACCTCTAGATACATG 59.006 45.833 0.00 0.00 0.00 3.21
3119 6900 5.545588 CCACATCAACCTCTAGATACATGG 58.454 45.833 0.00 0.00 0.00 3.66
3120 6901 5.070981 CCACATCAACCTCTAGATACATGGT 59.929 44.000 0.00 0.00 0.00 3.55
3121 6902 6.267699 CCACATCAACCTCTAGATACATGGTA 59.732 42.308 0.00 0.00 0.00 3.25
3122 6903 7.038729 CCACATCAACCTCTAGATACATGGTAT 60.039 40.741 0.00 0.00 0.00 2.73
3123 6904 8.031864 CACATCAACCTCTAGATACATGGTATC 58.968 40.741 8.04 8.04 0.00 2.24
3124 6905 7.179338 ACATCAACCTCTAGATACATGGTATCC 59.821 40.741 11.64 0.00 0.00 2.59
3125 6906 6.864421 TCAACCTCTAGATACATGGTATCCT 58.136 40.000 11.64 4.06 0.00 3.24
3126 6907 7.306013 TCAACCTCTAGATACATGGTATCCTT 58.694 38.462 11.64 0.00 0.00 3.36
3127 6908 8.453681 TCAACCTCTAGATACATGGTATCCTTA 58.546 37.037 11.64 0.65 0.00 2.69
3128 6909 9.261035 CAACCTCTAGATACATGGTATCCTTAT 57.739 37.037 11.64 0.00 0.00 1.73
3162 6943 0.328258 TGCTTAGGCCCTTGACCTTC 59.672 55.000 0.00 0.00 38.81 3.46
3187 6968 7.349859 TCCTAATACACTTGGATTCCTGGTATT 59.650 37.037 17.56 17.56 35.09 1.89
3193 6974 4.044065 ACTTGGATTCCTGGTATTCCACAA 59.956 41.667 12.39 4.81 37.97 3.33
3216 6997 7.068103 ACAACAACATGTGAAAGGTTATTCTGA 59.932 33.333 0.00 0.00 29.99 3.27
3221 7002 8.273780 ACATGTGAAAGGTTATTCTGATCTTC 57.726 34.615 0.00 0.00 0.00 2.87
3256 7037 6.166279 TGTTTTGTCTTATTTTTGGCACACA 58.834 32.000 0.00 0.00 39.29 3.72
3274 7056 5.680408 GCACACATATTGATCACCAATGCTT 60.680 40.000 0.00 0.00 44.67 3.91
3302 7084 3.788227 TTGTGCCAGGATAACTTGTCT 57.212 42.857 0.00 0.00 0.00 3.41
3303 7085 3.788227 TGTGCCAGGATAACTTGTCTT 57.212 42.857 0.00 0.00 0.00 3.01
3304 7086 3.411446 TGTGCCAGGATAACTTGTCTTG 58.589 45.455 0.00 0.00 0.00 3.02
3487 7269 3.571401 AGGAACCATCAAAGCAAGAACAG 59.429 43.478 0.00 0.00 0.00 3.16
3518 7300 6.611613 TGGCCATGAACAAAAATTGGTATA 57.388 33.333 0.00 0.00 34.12 1.47
3649 7431 3.054361 GTGCTGGAGGAAGGAAATAAGGA 60.054 47.826 0.00 0.00 0.00 3.36
3787 7573 8.321353 TGGTTTCATCACTTATGTTACATCTCT 58.679 33.333 0.00 0.00 36.89 3.10
4142 9563 5.242171 TGGTTCACTCGTGTAGTTCATTAGA 59.758 40.000 0.00 0.00 35.76 2.10
4172 9593 9.950680 GTTCTTCTTTCACATTTGTTAGAATCA 57.049 29.630 0.00 0.00 0.00 2.57
4318 11097 8.110860 TCCTTCACATATCAAAGGAAAGAAAC 57.889 34.615 7.29 0.00 44.23 2.78
4469 11255 1.553704 CTAGAACTGGCCCTAACGGTT 59.446 52.381 0.00 0.00 39.97 4.44
4575 11466 5.720202 TGCGAAGTGAATTCATGTACTACT 58.280 37.500 12.12 0.00 37.83 2.57
4611 11502 2.575455 ATCTCCTCCCGCGTCCTCTT 62.575 60.000 4.92 0.00 0.00 2.85
4705 11596 2.279037 AAAGCAACCCACCCGACACT 62.279 55.000 0.00 0.00 0.00 3.55
4789 11680 1.155155 CTAGGCTCCTCCCTCCCTC 59.845 68.421 0.00 0.00 36.41 4.30
4790 11681 1.625879 TAGGCTCCTCCCTCCCTCA 60.626 63.158 0.00 0.00 36.41 3.86
4793 11684 2.041405 CTCCTCCCTCCCTCACCC 60.041 72.222 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
276 277 4.271816 CTCGCTGTCGGATCCGGG 62.272 72.222 32.79 22.63 40.25 5.73
295 298 1.699730 TCTCTGTTGGTCTCGGTTCA 58.300 50.000 0.00 0.00 0.00 3.18
371 374 2.279069 CCGGCGCCTGGAGATCTAT 61.279 63.158 26.75 0.00 0.00 1.98
465 469 1.070604 ATGATCAGGCCGGATCCATT 58.929 50.000 34.07 20.56 42.41 3.16
698 723 2.418083 GCAAAGCTTGGCCGGCTAT 61.418 57.895 28.56 1.41 39.30 2.97
699 724 3.061848 GCAAAGCTTGGCCGGCTA 61.062 61.111 28.56 19.98 39.30 3.93
818 862 3.498397 AGATTGTGTTTGAGGCTAACGTG 59.502 43.478 0.00 0.00 0.00 4.49
819 863 3.740115 AGATTGTGTTTGAGGCTAACGT 58.260 40.909 0.00 0.00 0.00 3.99
820 864 5.168569 TCTAGATTGTGTTTGAGGCTAACG 58.831 41.667 0.00 0.00 0.00 3.18
821 865 6.092807 CCTTCTAGATTGTGTTTGAGGCTAAC 59.907 42.308 0.00 0.00 0.00 2.34
822 866 6.013725 TCCTTCTAGATTGTGTTTGAGGCTAA 60.014 38.462 0.00 0.00 0.00 3.09
823 867 5.483937 TCCTTCTAGATTGTGTTTGAGGCTA 59.516 40.000 0.00 0.00 0.00 3.93
824 868 4.287067 TCCTTCTAGATTGTGTTTGAGGCT 59.713 41.667 0.00 0.00 0.00 4.58
825 869 4.579869 TCCTTCTAGATTGTGTTTGAGGC 58.420 43.478 0.00 0.00 0.00 4.70
826 870 7.081526 CAATCCTTCTAGATTGTGTTTGAGG 57.918 40.000 6.17 0.00 45.30 3.86
867 911 0.953960 GTATATCCTTTGCCCGGCGG 60.954 60.000 21.46 21.46 0.00 6.13
868 912 0.034896 AGTATATCCTTTGCCCGGCG 59.965 55.000 4.58 0.00 0.00 6.46
869 913 1.610886 GGAGTATATCCTTTGCCCGGC 60.611 57.143 1.04 1.04 45.64 6.13
870 914 2.474410 GGAGTATATCCTTTGCCCGG 57.526 55.000 0.00 0.00 45.64 5.73
880 924 9.077674 CATTTGCGTATTACTCAGGAGTATATC 57.922 37.037 9.78 3.52 42.83 1.63
881 925 7.545965 GCATTTGCGTATTACTCAGGAGTATAT 59.454 37.037 9.78 8.86 42.83 0.86
882 926 6.866770 GCATTTGCGTATTACTCAGGAGTATA 59.133 38.462 9.78 2.75 42.83 1.47
883 927 5.696724 GCATTTGCGTATTACTCAGGAGTAT 59.303 40.000 9.78 4.01 42.83 2.12
884 928 5.047847 GCATTTGCGTATTACTCAGGAGTA 58.952 41.667 5.08 5.08 42.54 2.59
885 929 3.871594 GCATTTGCGTATTACTCAGGAGT 59.128 43.478 7.18 7.18 45.02 3.85
886 930 4.458951 GCATTTGCGTATTACTCAGGAG 57.541 45.455 0.00 0.00 0.00 3.69
952 996 4.230502 TCCCAGCCCTTGAGATTCTATTTT 59.769 41.667 0.00 0.00 0.00 1.82
968 1012 2.768492 CGCTCATTGCTTCCCAGCC 61.768 63.158 0.00 0.00 46.74 4.85
1024 1068 0.890996 GTGGAGCACAGTTTGAGGGG 60.891 60.000 0.00 0.00 34.08 4.79
1032 1076 0.250901 GGTGAATGGTGGAGCACAGT 60.251 55.000 0.00 0.00 35.86 3.55
1033 1077 0.250858 TGGTGAATGGTGGAGCACAG 60.251 55.000 0.00 0.00 35.86 3.66
1034 1078 0.405198 ATGGTGAATGGTGGAGCACA 59.595 50.000 0.00 0.00 35.86 4.57
1035 1079 1.098050 GATGGTGAATGGTGGAGCAC 58.902 55.000 0.00 0.00 0.00 4.40
1036 1080 0.994247 AGATGGTGAATGGTGGAGCA 59.006 50.000 0.00 0.00 0.00 4.26
1037 1081 1.065199 TGAGATGGTGAATGGTGGAGC 60.065 52.381 0.00 0.00 0.00 4.70
1038 1082 3.354948 TTGAGATGGTGAATGGTGGAG 57.645 47.619 0.00 0.00 0.00 3.86
1039 1083 3.805066 TTTGAGATGGTGAATGGTGGA 57.195 42.857 0.00 0.00 0.00 4.02
1060 1106 1.448497 GGTGACGGTGAGTTGGGAA 59.552 57.895 0.00 0.00 0.00 3.97
1087 1133 0.898320 AGATTACACAGCGCAGAGGT 59.102 50.000 11.47 8.64 0.00 3.85
1110 1156 7.280205 ACGATGGTGAATTTTAACCTGAGATAC 59.720 37.037 0.00 0.00 37.36 2.24
1111 1157 7.335627 ACGATGGTGAATTTTAACCTGAGATA 58.664 34.615 0.00 0.00 37.36 1.98
1112 1158 6.180472 ACGATGGTGAATTTTAACCTGAGAT 58.820 36.000 0.00 0.00 37.36 2.75
1113 1159 5.556915 ACGATGGTGAATTTTAACCTGAGA 58.443 37.500 0.00 0.00 37.36 3.27
1114 1160 5.880054 ACGATGGTGAATTTTAACCTGAG 57.120 39.130 0.00 2.47 37.36 3.35
1135 1223 3.907894 TCGCCCAATTAAGAAACACAC 57.092 42.857 0.00 0.00 0.00 3.82
1169 1257 0.608856 ACATCCTGCATGCGTTCCAA 60.609 50.000 14.09 0.00 35.65 3.53
1171 1259 1.026182 TGACATCCTGCATGCGTTCC 61.026 55.000 14.09 0.00 35.65 3.62
1173 1261 1.308069 GGTGACATCCTGCATGCGTT 61.308 55.000 14.09 0.00 35.65 4.84
1175 1263 2.816360 CGGTGACATCCTGCATGCG 61.816 63.158 14.09 7.87 35.65 4.73
1176 1264 1.709147 GACGGTGACATCCTGCATGC 61.709 60.000 11.82 11.82 35.65 4.06
1177 1265 1.423721 CGACGGTGACATCCTGCATG 61.424 60.000 0.00 0.00 38.64 4.06
1884 1981 2.740826 GGTCGCAAAGGCTACGCA 60.741 61.111 8.57 0.00 36.63 5.24
1886 1983 1.810030 GGAGGTCGCAAAGGCTACG 60.810 63.158 0.00 0.00 36.63 3.51
1952 2049 2.432972 GCCAAGGGCGCAATGTTG 60.433 61.111 10.83 6.51 39.62 3.33
1981 2078 2.618709 GGATGGTGCACAAAGTATAGCC 59.381 50.000 20.43 3.88 0.00 3.93
2015 2112 1.808411 TGATCTGGAAAACCAGCGAC 58.192 50.000 10.93 6.00 37.69 5.19
2117 2235 4.256920 GTGAGTTGCATTCTACCAGATGT 58.743 43.478 0.00 0.00 0.00 3.06
2384 2839 0.794229 CGCATGTGTCGATTGGTTGC 60.794 55.000 0.00 0.00 0.00 4.17
2536 2991 9.823647 CACTATTTAACATGATCTAGGAACAGT 57.176 33.333 0.00 0.00 0.00 3.55
2557 3012 7.147302 ACAAGGAGAATGTATTAAGCCCACTAT 60.147 37.037 0.00 0.00 0.00 2.12
2591 3071 6.710744 CGAATATAACAGCCCTTTGTTCCTAT 59.289 38.462 0.00 0.00 41.31 2.57
2743 6524 6.425577 TCTCCGTTTCGAAAAGAAGAAAAA 57.574 33.333 22.90 0.00 40.40 1.94
2744 6525 6.613755 ATCTCCGTTTCGAAAAGAAGAAAA 57.386 33.333 22.90 0.00 40.40 2.29
2746 6527 7.718272 TTAATCTCCGTTTCGAAAAGAAGAA 57.282 32.000 22.90 12.51 40.40 2.52
2748 6529 7.793902 TCTTTAATCTCCGTTTCGAAAAGAAG 58.206 34.615 22.90 13.98 40.40 2.85
2749 6530 7.718272 TCTTTAATCTCCGTTTCGAAAAGAA 57.282 32.000 22.90 3.90 37.01 2.52
2750 6531 7.718272 TTCTTTAATCTCCGTTTCGAAAAGA 57.282 32.000 22.90 17.26 31.75 2.52
2751 6532 8.950403 AATTCTTTAATCTCCGTTTCGAAAAG 57.050 30.769 13.10 14.60 0.00 2.27
2813 6594 4.336433 CAGATCGATGGTTGGTTGCTTATT 59.664 41.667 0.54 0.00 0.00 1.40
2814 6595 3.879295 CAGATCGATGGTTGGTTGCTTAT 59.121 43.478 0.54 0.00 0.00 1.73
2836 6617 2.559440 GATTGAGCATCTGTCCAGGTC 58.441 52.381 0.00 0.00 34.92 3.85
2839 6620 2.169978 TGAGGATTGAGCATCTGTCCAG 59.830 50.000 0.00 0.00 40.33 3.86
2854 6635 3.391296 AGGGCACGTATTATTGTGAGGAT 59.609 43.478 0.00 0.00 38.36 3.24
2869 6650 2.100631 GGTGTTGATCGAGGGCACG 61.101 63.158 0.00 0.00 0.00 5.34
2874 6655 1.001974 TGAGTTGGGTGTTGATCGAGG 59.998 52.381 0.00 0.00 0.00 4.63
2877 6658 1.800586 CTGTGAGTTGGGTGTTGATCG 59.199 52.381 0.00 0.00 0.00 3.69
2934 6715 4.085357 ACACCTCATCAAACTGCTTGTA 57.915 40.909 0.00 0.00 36.34 2.41
2949 6730 2.673833 CGAGTACCACAAGAACACCTC 58.326 52.381 0.00 0.00 0.00 3.85
2967 6748 0.391130 CAGAAACGAGGGGATTGCGA 60.391 55.000 0.00 0.00 0.00 5.10
2980 6761 7.932120 ATAGATATTGCGTCAGTACAGAAAC 57.068 36.000 0.00 0.00 0.00 2.78
2983 6764 9.459640 GTTTAATAGATATTGCGTCAGTACAGA 57.540 33.333 0.00 0.00 0.00 3.41
2984 6765 9.464714 AGTTTAATAGATATTGCGTCAGTACAG 57.535 33.333 0.00 0.00 0.00 2.74
3026 6807 2.024846 TGGAACAACAAGAAAGGGGTGA 60.025 45.455 0.00 0.00 31.92 4.02
3046 6827 3.880047 ATTTGGCTGATTGGTCATGTG 57.120 42.857 0.00 0.00 32.98 3.21
3071 6852 3.053693 AGAACAATCAATCGATTCCCCCA 60.054 43.478 7.92 0.00 39.96 4.96
3098 6879 7.179338 GGATACCATGTATCTAGAGGTTGATGT 59.821 40.741 12.53 0.00 33.91 3.06
3099 6880 7.398618 AGGATACCATGTATCTAGAGGTTGATG 59.601 40.741 12.53 0.75 33.91 3.07
3100 6881 7.483018 AGGATACCATGTATCTAGAGGTTGAT 58.517 38.462 12.53 0.00 33.91 2.57
3101 6882 6.864421 AGGATACCATGTATCTAGAGGTTGA 58.136 40.000 12.53 0.00 33.91 3.18
3102 6883 7.546250 AAGGATACCATGTATCTAGAGGTTG 57.454 40.000 12.53 0.00 33.91 3.77
3127 6908 9.273137 GGGCCTAAGCATCCACTATATATATAT 57.727 37.037 0.84 10.10 42.56 0.86
3128 6909 8.465146 AGGGCCTAAGCATCCACTATATATATA 58.535 37.037 2.82 2.49 42.56 0.86
3129 6910 7.316841 AGGGCCTAAGCATCCACTATATATAT 58.683 38.462 2.82 0.00 42.56 0.86
3130 6911 6.693599 AGGGCCTAAGCATCCACTATATATA 58.306 40.000 2.82 0.00 42.56 0.86
3131 6912 5.542743 AGGGCCTAAGCATCCACTATATAT 58.457 41.667 2.82 0.00 42.56 0.86
3162 6943 5.373812 ACCAGGAATCCAAGTGTATTAGG 57.626 43.478 0.61 0.00 0.00 2.69
3187 6968 3.360867 ACCTTTCACATGTTGTTGTGGA 58.639 40.909 0.00 0.00 45.63 4.02
3193 6974 7.667219 AGATCAGAATAACCTTTCACATGTTGT 59.333 33.333 0.00 0.00 0.00 3.32
3233 7014 6.654793 TGTGTGCCAAAAATAAGACAAAAC 57.345 33.333 0.00 0.00 0.00 2.43
3256 7037 6.131264 TCCTGAAAGCATTGGTGATCAATAT 58.869 36.000 0.00 0.00 43.70 1.28
3274 7056 2.905415 ATCCTGGCACAAATCCTGAA 57.095 45.000 0.00 0.00 38.70 3.02
3302 7084 1.884497 CGCACCCCATGGTTCTTACAA 60.884 52.381 11.73 0.00 44.75 2.41
3303 7085 0.322098 CGCACCCCATGGTTCTTACA 60.322 55.000 11.73 0.00 44.75 2.41
3304 7086 1.654023 GCGCACCCCATGGTTCTTAC 61.654 60.000 11.73 0.00 44.75 2.34
3487 7269 9.344309 CAATTTTTGTTCATGGCCAATTATTTC 57.656 29.630 10.96 0.00 0.00 2.17
3518 7300 6.484288 TGGATAGTGATGATCAAAACCAACT 58.516 36.000 0.00 0.35 0.00 3.16
3612 7394 3.120792 CCAGCACAATCATTTAGCATGC 58.879 45.455 10.51 10.51 0.00 4.06
3622 7404 1.361204 TCCTTCCTCCAGCACAATCA 58.639 50.000 0.00 0.00 0.00 2.57
3787 7573 4.867608 GCAAAAGGAGCACAAGTACAAAAA 59.132 37.500 0.00 0.00 0.00 1.94
4172 9593 9.769677 AAATTAAAGGAGCCCTTAAAGTTAGAT 57.230 29.630 6.88 0.00 43.92 1.98
4318 11097 7.921786 TTTTCATTAGGTCTGAGGTAATGTG 57.078 36.000 14.21 0.00 36.15 3.21
4325 11104 7.751768 AGAAACTTTTTCATTAGGTCTGAGG 57.248 36.000 1.72 0.00 0.00 3.86
4469 11255 3.192633 TCGCTCATAACTGCTAGTGTTCA 59.807 43.478 6.55 0.00 0.00 3.18
4499 11285 2.708861 TCAACTTCTGCTCCCCAGTTAA 59.291 45.455 0.00 0.00 42.38 2.01
4500 11286 2.334977 TCAACTTCTGCTCCCCAGTTA 58.665 47.619 0.00 0.00 42.38 2.24
4504 11290 2.978156 AAATCAACTTCTGCTCCCCA 57.022 45.000 0.00 0.00 0.00 4.96
4575 11466 3.255642 GGAGATTAGTTGCAGCAAAACCA 59.744 43.478 10.11 0.00 0.00 3.67
4611 11502 2.359850 GACCCGCTTGTCCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
4705 11596 2.666098 GGGTAGCGGGAGGAAAGCA 61.666 63.158 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.