Multiple sequence alignment - TraesCS3D01G137500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G137500 chr3D 100.000 2717 0 0 1 2717 96125899 96123183 0.000000e+00 5018.0
1 TraesCS3D01G137500 chr3D 90.798 739 46 12 995 1722 95957413 95956686 0.000000e+00 968.0
2 TraesCS3D01G137500 chr3B 92.019 1466 68 24 439 1886 147184773 147183339 0.000000e+00 2013.0
3 TraesCS3D01G137500 chr3B 90.261 729 58 4 1005 1722 146891447 146890721 0.000000e+00 941.0
4 TraesCS3D01G137500 chr3B 86.919 581 46 7 1973 2552 147183329 147182778 2.300000e-175 625.0
5 TraesCS3D01G137500 chr3B 91.768 328 17 7 1 326 147185360 147185041 5.340000e-122 448.0
6 TraesCS3D01G137500 chr3A 91.096 1213 64 23 870 2063 114238992 114237805 0.000000e+00 1602.0
7 TraesCS3D01G137500 chr3A 91.105 742 55 3 991 1722 114048103 114047363 0.000000e+00 994.0
8 TraesCS3D01G137500 chr3A 90.873 252 18 5 1 251 114240009 114239762 1.560000e-87 333.0
9 TraesCS3D01G137500 chr3A 92.391 92 7 0 745 836 114239083 114238992 6.100000e-27 132.0
10 TraesCS3D01G137500 chr1D 85.350 157 19 4 1254 1408 437301177 437301023 2.800000e-35 159.0
11 TraesCS3D01G137500 chr1D 85.401 137 14 6 1254 1387 437410985 437411118 1.310000e-28 137.0
12 TraesCS3D01G137500 chr4A 100.000 29 0 0 2147 2175 600626109 600626137 1.000000e-03 54.7
13 TraesCS3D01G137500 chr4A 100.000 29 0 0 2147 2175 600653609 600653637 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G137500 chr3D 96123183 96125899 2716 True 5018.000000 5018 100.000000 1 2717 1 chr3D.!!$R2 2716
1 TraesCS3D01G137500 chr3D 95956686 95957413 727 True 968.000000 968 90.798000 995 1722 1 chr3D.!!$R1 727
2 TraesCS3D01G137500 chr3B 147182778 147185360 2582 True 1028.666667 2013 90.235333 1 2552 3 chr3B.!!$R2 2551
3 TraesCS3D01G137500 chr3B 146890721 146891447 726 True 941.000000 941 90.261000 1005 1722 1 chr3B.!!$R1 717
4 TraesCS3D01G137500 chr3A 114047363 114048103 740 True 994.000000 994 91.105000 991 1722 1 chr3A.!!$R1 731
5 TraesCS3D01G137500 chr3A 114237805 114240009 2204 True 689.000000 1602 91.453333 1 2063 3 chr3A.!!$R2 2062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 420 0.099436 CATTTACGCAGCTGGAAGGC 59.901 55.0 17.12 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2705 0.753111 GGGATGGATGGGCTCAACAC 60.753 60.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.663827 TGGATATGTATGTTACCTAGAAACCG 58.336 38.462 0.00 0.00 0.00 4.44
150 152 6.314152 GGCTCACTACTGTTTTATCCTCTTTC 59.686 42.308 0.00 0.00 0.00 2.62
201 203 2.183679 TGACCTGCCTTTTGTTTGGTT 58.816 42.857 0.00 0.00 0.00 3.67
221 223 7.883391 TGGTTACTCTCGAATCTTCTCTAAT 57.117 36.000 0.00 0.00 0.00 1.73
259 262 1.356527 GAATTTCGTGCGCCCTACGT 61.357 55.000 16.86 0.00 46.11 3.57
277 280 5.692204 CCTACGTGATGACCATTGTATCTTC 59.308 44.000 0.00 0.00 0.00 2.87
286 289 4.406456 ACCATTGTATCTTCCAAGTTGCA 58.594 39.130 0.00 0.00 0.00 4.08
287 290 4.832266 ACCATTGTATCTTCCAAGTTGCAA 59.168 37.500 0.00 0.00 35.71 4.08
288 291 5.163513 CCATTGTATCTTCCAAGTTGCAAC 58.836 41.667 22.17 22.17 34.65 4.17
289 292 4.846779 TTGTATCTTCCAAGTTGCAACC 57.153 40.909 25.62 8.37 29.41 3.77
302 395 6.378280 CCAAGTTGCAACCTCTTCCTTATATT 59.622 38.462 25.62 6.03 0.00 1.28
305 398 8.056407 AGTTGCAACCTCTTCCTTATATTTTC 57.944 34.615 25.62 0.00 0.00 2.29
326 419 0.734889 CCATTTACGCAGCTGGAAGG 59.265 55.000 17.12 0.00 0.00 3.46
327 420 0.099436 CATTTACGCAGCTGGAAGGC 59.901 55.000 17.12 0.00 0.00 4.35
330 423 0.322456 TTACGCAGCTGGAAGGCATT 60.322 50.000 17.12 0.00 34.17 3.56
341 667 4.640201 GCTGGAAGGCATTCATTACTGTTA 59.360 41.667 13.81 0.00 37.15 2.41
367 693 8.787852 ACTCTTTTCTGAAGATATGAAACCAAC 58.212 33.333 0.00 0.00 30.66 3.77
368 694 8.110860 TCTTTTCTGAAGATATGAAACCAACC 57.889 34.615 0.00 0.00 30.66 3.77
369 695 7.944554 TCTTTTCTGAAGATATGAAACCAACCT 59.055 33.333 0.00 0.00 30.66 3.50
370 696 9.231297 CTTTTCTGAAGATATGAAACCAACCTA 57.769 33.333 0.00 0.00 30.66 3.08
371 697 8.792830 TTTCTGAAGATATGAAACCAACCTAG 57.207 34.615 0.00 0.00 0.00 3.02
372 698 7.733773 TCTGAAGATATGAAACCAACCTAGA 57.266 36.000 0.00 0.00 0.00 2.43
373 699 8.146053 TCTGAAGATATGAAACCAACCTAGAA 57.854 34.615 0.00 0.00 0.00 2.10
374 700 8.041323 TCTGAAGATATGAAACCAACCTAGAAC 58.959 37.037 0.00 0.00 0.00 3.01
375 701 7.918076 TGAAGATATGAAACCAACCTAGAACT 58.082 34.615 0.00 0.00 0.00 3.01
376 702 7.824289 TGAAGATATGAAACCAACCTAGAACTG 59.176 37.037 0.00 0.00 0.00 3.16
377 703 7.259088 AGATATGAAACCAACCTAGAACTGT 57.741 36.000 0.00 0.00 0.00 3.55
378 704 8.375493 AGATATGAAACCAACCTAGAACTGTA 57.625 34.615 0.00 0.00 0.00 2.74
379 705 8.822805 AGATATGAAACCAACCTAGAACTGTAA 58.177 33.333 0.00 0.00 0.00 2.41
380 706 9.444600 GATATGAAACCAACCTAGAACTGTAAA 57.555 33.333 0.00 0.00 0.00 2.01
381 707 9.975218 ATATGAAACCAACCTAGAACTGTAAAT 57.025 29.630 0.00 0.00 0.00 1.40
383 709 9.975218 ATGAAACCAACCTAGAACTGTAAATAT 57.025 29.630 0.00 0.00 0.00 1.28
384 710 9.802039 TGAAACCAACCTAGAACTGTAAATATT 57.198 29.630 0.00 0.00 0.00 1.28
392 718 9.668497 ACCTAGAACTGTAAATATTTTCTCCAC 57.332 33.333 5.91 0.00 0.00 4.02
393 719 9.667107 CCTAGAACTGTAAATATTTTCTCCACA 57.333 33.333 5.91 3.47 0.00 4.17
395 721 8.029642 AGAACTGTAAATATTTTCTCCACACG 57.970 34.615 5.91 2.12 0.00 4.49
396 722 7.876068 AGAACTGTAAATATTTTCTCCACACGA 59.124 33.333 5.91 0.00 0.00 4.35
397 723 8.561738 AACTGTAAATATTTTCTCCACACGAT 57.438 30.769 5.91 0.00 0.00 3.73
398 724 7.974675 ACTGTAAATATTTTCTCCACACGATG 58.025 34.615 5.91 0.00 0.00 3.84
399 725 6.781138 TGTAAATATTTTCTCCACACGATGC 58.219 36.000 5.91 0.00 0.00 3.91
400 726 4.900635 AATATTTTCTCCACACGATGCC 57.099 40.909 0.00 0.00 0.00 4.40
401 727 1.086696 ATTTTCTCCACACGATGCCG 58.913 50.000 0.00 0.00 42.50 5.69
402 728 1.573829 TTTTCTCCACACGATGCCGC 61.574 55.000 0.00 0.00 39.95 6.53
403 729 2.723586 TTTCTCCACACGATGCCGCA 62.724 55.000 0.00 0.00 39.95 5.69
404 730 2.512286 CTCCACACGATGCCGCAT 60.512 61.111 5.28 5.28 39.95 4.73
405 731 1.227234 CTCCACACGATGCCGCATA 60.227 57.895 5.67 0.00 39.95 3.14
406 732 0.601046 CTCCACACGATGCCGCATAT 60.601 55.000 5.67 0.00 39.95 1.78
407 733 0.879839 TCCACACGATGCCGCATATG 60.880 55.000 5.67 10.40 39.95 1.78
408 734 1.159713 CCACACGATGCCGCATATGT 61.160 55.000 14.31 14.31 39.95 2.29
409 735 1.496934 CACACGATGCCGCATATGTA 58.503 50.000 18.00 0.00 39.95 2.29
410 736 1.864082 CACACGATGCCGCATATGTAA 59.136 47.619 18.00 0.00 39.95 2.41
411 737 2.286563 CACACGATGCCGCATATGTAAA 59.713 45.455 18.00 0.00 39.95 2.01
412 738 3.058983 CACACGATGCCGCATATGTAAAT 60.059 43.478 18.00 3.79 39.95 1.40
413 739 4.151512 CACACGATGCCGCATATGTAAATA 59.848 41.667 18.00 0.00 39.95 1.40
414 740 4.935205 ACACGATGCCGCATATGTAAATAT 59.065 37.500 17.27 0.00 39.95 1.28
415 741 5.411361 ACACGATGCCGCATATGTAAATATT 59.589 36.000 17.27 0.00 39.95 1.28
416 742 6.072728 ACACGATGCCGCATATGTAAATATTT 60.073 34.615 17.27 5.89 39.95 1.40
417 743 6.801377 CACGATGCCGCATATGTAAATATTTT 59.199 34.615 5.67 0.00 39.95 1.82
418 744 7.007367 CACGATGCCGCATATGTAAATATTTTC 59.993 37.037 5.67 1.70 39.95 2.29
419 745 7.094805 ACGATGCCGCATATGTAAATATTTTCT 60.095 33.333 5.67 0.00 39.95 2.52
420 746 8.387354 CGATGCCGCATATGTAAATATTTTCTA 58.613 33.333 5.67 0.00 0.00 2.10
421 747 9.490663 GATGCCGCATATGTAAATATTTTCTAC 57.509 33.333 5.67 0.00 0.00 2.59
422 748 8.384607 TGCCGCATATGTAAATATTTTCTACA 57.615 30.769 5.91 5.41 0.00 2.74
423 749 8.286800 TGCCGCATATGTAAATATTTTCTACAC 58.713 33.333 5.91 0.00 0.00 2.90
424 750 7.749126 GCCGCATATGTAAATATTTTCTACACC 59.251 37.037 5.91 0.00 0.00 4.16
425 751 8.234546 CCGCATATGTAAATATTTTCTACACCC 58.765 37.037 5.91 0.00 0.00 4.61
426 752 7.955324 CGCATATGTAAATATTTTCTACACCCG 59.045 37.037 5.91 3.26 0.00 5.28
427 753 8.780249 GCATATGTAAATATTTTCTACACCCGT 58.220 33.333 5.91 0.00 0.00 5.28
433 759 9.476761 GTAAATATTTTCTACACCCGTTTTACG 57.523 33.333 5.91 0.00 42.11 3.18
434 760 7.671495 AATATTTTCTACACCCGTTTTACGT 57.329 32.000 0.00 0.00 40.58 3.57
435 761 7.671495 ATATTTTCTACACCCGTTTTACGTT 57.329 32.000 0.00 0.00 40.58 3.99
436 762 5.809719 TTTTCTACACCCGTTTTACGTTT 57.190 34.783 0.00 0.00 40.58 3.60
437 763 4.792528 TTCTACACCCGTTTTACGTTTG 57.207 40.909 0.00 0.00 40.58 2.93
438 764 4.052159 TCTACACCCGTTTTACGTTTGA 57.948 40.909 0.00 0.00 40.58 2.69
439 765 4.437239 TCTACACCCGTTTTACGTTTGAA 58.563 39.130 0.00 0.00 40.58 2.69
440 766 4.872691 TCTACACCCGTTTTACGTTTGAAA 59.127 37.500 0.00 0.00 40.58 2.69
441 767 3.757184 ACACCCGTTTTACGTTTGAAAC 58.243 40.909 0.00 2.53 40.58 2.78
513 866 4.701956 AATTTCATGACGGAATGACACC 57.298 40.909 0.00 0.00 36.31 4.16
514 867 3.417069 TTTCATGACGGAATGACACCT 57.583 42.857 0.00 0.00 36.31 4.00
516 869 1.623311 TCATGACGGAATGACACCTGT 59.377 47.619 0.00 0.00 31.58 4.00
518 871 3.119137 TCATGACGGAATGACACCTGTAG 60.119 47.826 0.00 0.00 31.58 2.74
519 872 2.244695 TGACGGAATGACACCTGTAGT 58.755 47.619 0.00 0.00 0.00 2.73
535 888 7.603651 CACCTGTAGTGTAGAAAATACAGTCT 58.396 38.462 9.97 0.00 42.22 3.24
538 891 8.304596 CCTGTAGTGTAGAAAATACAGTCTGAA 58.695 37.037 6.91 0.00 42.22 3.02
554 907 8.289939 ACAGTCTGAACTTATTATTCCGTAGA 57.710 34.615 6.91 0.00 31.71 2.59
584 982 2.426738 TCATTTTTGCCTAGAATGCCCG 59.573 45.455 0.00 0.00 32.28 6.13
595 993 1.666209 GAATGCCCGGGGTGTCATTG 61.666 60.000 25.28 0.00 30.19 2.82
597 995 2.750237 GCCCGGGGTGTCATTGAC 60.750 66.667 25.28 9.93 0.00 3.18
599 997 1.078426 CCCGGGGTGTCATTGACTC 60.078 63.158 14.71 13.43 33.15 3.36
600 998 1.676968 CCGGGGTGTCATTGACTCA 59.323 57.895 17.26 0.00 33.15 3.41
602 1000 1.340017 CCGGGGTGTCATTGACTCATT 60.340 52.381 17.26 0.00 33.15 2.57
603 1001 2.436417 CGGGGTGTCATTGACTCATTT 58.564 47.619 17.26 0.00 33.15 2.32
607 1005 4.156739 GGGGTGTCATTGACTCATTTCTTC 59.843 45.833 17.26 0.55 33.15 2.87
608 1006 4.142816 GGGTGTCATTGACTCATTTCTTCG 60.143 45.833 17.26 0.00 33.15 3.79
610 1008 5.377358 GTGTCATTGACTCATTTCTTCGTG 58.623 41.667 17.26 0.00 33.15 4.35
622 1036 7.441157 ACTCATTTCTTCGTGAAACTTCATACA 59.559 33.333 8.09 0.00 46.08 2.29
626 1040 4.923871 TCTTCGTGAAACTTCATACAGAGC 59.076 41.667 0.00 0.00 39.73 4.09
655 1069 6.186957 TGGTCAACCATGTTTGCTAGATATT 58.813 36.000 0.00 0.00 42.01 1.28
657 1071 7.178274 TGGTCAACCATGTTTGCTAGATATTTT 59.822 33.333 0.00 0.00 42.01 1.82
658 1072 7.702348 GGTCAACCATGTTTGCTAGATATTTTC 59.298 37.037 0.00 0.00 35.64 2.29
684 1098 8.923609 TTTTTCAATTTTTCTGAATTTTGCCC 57.076 26.923 0.00 0.00 32.98 5.36
770 1255 4.693566 CCGGTTTCTACTTGCTCAATGTTA 59.306 41.667 0.00 0.00 0.00 2.41
815 1300 2.038387 AGTTTCGCTGTCAGTTTGGT 57.962 45.000 0.93 0.00 0.00 3.67
850 1335 4.449743 GCGAAAGTTTATATGGTATGCCGA 59.550 41.667 0.00 0.00 37.67 5.54
853 1338 7.672738 CGAAAGTTTATATGGTATGCCGATAC 58.327 38.462 0.00 0.00 37.67 2.24
854 1339 7.329962 CGAAAGTTTATATGGTATGCCGATACA 59.670 37.037 0.00 0.00 36.85 2.29
855 1340 9.162764 GAAAGTTTATATGGTATGCCGATACAT 57.837 33.333 0.00 0.00 36.85 2.29
953 1445 1.202891 AGGTTAACCACAGCAAGTCCC 60.203 52.381 26.26 0.00 38.89 4.46
979 1472 1.135689 CCTTGGCAAGAAATTCGGTCG 60.136 52.381 28.18 3.67 0.00 4.79
988 1481 3.612247 AATTCGGTCGCCTGCTGCT 62.612 57.895 0.00 0.00 38.05 4.24
1800 2305 5.066375 TGAATAATCGAGTGGAATTGCCTTG 59.934 40.000 0.00 0.00 37.63 3.61
1816 2324 1.667724 CCTTGTGATGAACTGCGATCC 59.332 52.381 0.00 0.00 0.00 3.36
1848 2356 4.278419 GCTGGTAGTTTTCCTTGTGTGATT 59.722 41.667 0.00 0.00 0.00 2.57
1887 2406 4.342352 GTTTCATTTCATGAGACCGACC 57.658 45.455 0.00 0.00 40.94 4.79
1888 2407 2.293677 TCATTTCATGAGACCGACCG 57.706 50.000 0.00 0.00 33.59 4.79
1889 2408 1.822371 TCATTTCATGAGACCGACCGA 59.178 47.619 0.00 0.00 33.59 4.69
1940 2460 1.536940 CATGAACATGGGCACTCACA 58.463 50.000 6.87 0.00 35.24 3.58
1941 2461 1.200716 CATGAACATGGGCACTCACAC 59.799 52.381 6.87 0.00 35.24 3.82
1942 2462 0.182299 TGAACATGGGCACTCACACA 59.818 50.000 0.00 0.00 0.00 3.72
1944 2464 1.001378 GAACATGGGCACTCACACAAC 60.001 52.381 0.00 0.00 0.00 3.32
1945 2465 0.823356 ACATGGGCACTCACACAACC 60.823 55.000 0.00 0.00 0.00 3.77
1946 2466 0.822944 CATGGGCACTCACACAACCA 60.823 55.000 0.00 0.00 0.00 3.67
1947 2467 0.538057 ATGGGCACTCACACAACCAG 60.538 55.000 0.00 0.00 0.00 4.00
1948 2468 1.152963 GGGCACTCACACAACCAGT 60.153 57.895 0.00 0.00 0.00 4.00
1949 2469 0.751643 GGGCACTCACACAACCAGTT 60.752 55.000 0.00 0.00 0.00 3.16
1950 2470 0.663153 GGCACTCACACAACCAGTTC 59.337 55.000 0.00 0.00 0.00 3.01
1951 2471 1.668419 GCACTCACACAACCAGTTCT 58.332 50.000 0.00 0.00 0.00 3.01
1952 2472 2.017049 GCACTCACACAACCAGTTCTT 58.983 47.619 0.00 0.00 0.00 2.52
1957 2477 5.584649 CACTCACACAACCAGTTCTTTCTTA 59.415 40.000 0.00 0.00 0.00 2.10
1971 2491 9.261180 CAGTTCTTTCTTACTTGTGACTATCAA 57.739 33.333 0.00 0.00 0.00 2.57
1983 2503 7.936847 ACTTGTGACTATCAATGGTTTAGAACA 59.063 33.333 0.00 0.00 0.00 3.18
2034 2554 1.346062 GGAGGGAGCAGATCAGCATA 58.654 55.000 13.03 0.00 36.85 3.14
2070 2590 2.256306 CCCACCTAAACTTGGGCAATT 58.744 47.619 0.00 0.00 46.22 2.32
2071 2591 2.637382 CCCACCTAAACTTGGGCAATTT 59.363 45.455 0.00 0.00 46.22 1.82
2080 2600 9.586435 CCTAAACTTGGGCAATTTAGATTTAAG 57.414 33.333 4.87 0.00 37.89 1.85
2140 2660 5.644644 AGTCGTCCCTGTAAATTTACTACG 58.355 41.667 24.81 24.39 34.77 3.51
2153 2673 4.541973 TTTACTACGTTTTCCCCCTCTC 57.458 45.455 0.00 0.00 0.00 3.20
2182 2702 3.063084 GACTCCTCTCACCGCCGT 61.063 66.667 0.00 0.00 0.00 5.68
2183 2703 3.053849 GACTCCTCTCACCGCCGTC 62.054 68.421 0.00 0.00 0.00 4.79
2184 2704 3.827898 CTCCTCTCACCGCCGTCC 61.828 72.222 0.00 0.00 0.00 4.79
2187 2707 4.778415 CTCTCACCGCCGTCCGTG 62.778 72.222 0.00 0.00 34.38 4.94
2189 2709 4.657824 CTCACCGCCGTCCGTGTT 62.658 66.667 0.00 0.00 34.38 3.32
2190 2710 4.953868 TCACCGCCGTCCGTGTTG 62.954 66.667 0.00 0.00 34.38 3.33
2191 2711 4.953868 CACCGCCGTCCGTGTTGA 62.954 66.667 0.00 0.00 34.38 3.18
2192 2712 4.657824 ACCGCCGTCCGTGTTGAG 62.658 66.667 0.00 0.00 34.38 3.02
2196 2716 4.308458 CCGTCCGTGTTGAGCCCA 62.308 66.667 0.00 0.00 0.00 5.36
2197 2717 2.047274 CGTCCGTGTTGAGCCCAT 60.047 61.111 0.00 0.00 0.00 4.00
2198 2718 2.100631 CGTCCGTGTTGAGCCCATC 61.101 63.158 0.00 0.00 0.00 3.51
2199 2719 1.745489 GTCCGTGTTGAGCCCATCC 60.745 63.158 0.00 0.00 0.00 3.51
2200 2720 2.220586 TCCGTGTTGAGCCCATCCA 61.221 57.895 0.00 0.00 0.00 3.41
2201 2721 1.077501 CCGTGTTGAGCCCATCCAT 60.078 57.895 0.00 0.00 0.00 3.41
2202 2722 1.097547 CCGTGTTGAGCCCATCCATC 61.098 60.000 0.00 0.00 0.00 3.51
2234 2754 2.269241 GCCGCTACAAGGGCTCTT 59.731 61.111 0.00 0.00 45.93 2.85
2269 2789 9.869757 TTCAACGATTTGACTATCAAGAATAGA 57.130 29.630 0.00 0.00 41.64 1.98
2280 2800 3.724478 TCAAGAATAGAGAGGAAGGCCA 58.276 45.455 5.01 0.00 36.29 5.36
2289 2809 0.905357 GAGGAAGGCCAGACAAGCTA 59.095 55.000 5.01 0.00 36.29 3.32
2295 2815 1.153549 GCCAGACAAGCTAGACCCG 60.154 63.158 0.00 0.00 0.00 5.28
2296 2816 1.517832 CCAGACAAGCTAGACCCGG 59.482 63.158 0.00 0.00 0.00 5.73
2308 2828 4.019591 AGCTAGACCCGGAACAATTAACTT 60.020 41.667 0.73 0.00 0.00 2.66
2344 2864 2.069273 AGCTCGTCTGAATTTTGTCCG 58.931 47.619 0.00 0.00 0.00 4.79
2348 2868 3.057019 TCGTCTGAATTTTGTCCGTCAG 58.943 45.455 0.00 0.00 39.09 3.51
2349 2869 2.800544 CGTCTGAATTTTGTCCGTCAGT 59.199 45.455 0.00 0.00 38.87 3.41
2350 2870 3.362986 CGTCTGAATTTTGTCCGTCAGTG 60.363 47.826 0.00 0.00 38.87 3.66
2356 2876 1.740332 TTTGTCCGTCAGTGGCTCGA 61.740 55.000 0.00 0.00 0.00 4.04
2361 2881 1.135731 CGTCAGTGGCTCGAGAGAC 59.864 63.158 18.75 11.39 36.85 3.36
2362 2882 1.578206 CGTCAGTGGCTCGAGAGACA 61.578 60.000 18.75 4.23 45.91 3.41
2369 2889 0.460987 GGCTCGAGAGACAACATGGG 60.461 60.000 18.75 0.00 36.17 4.00
2381 2901 5.079643 AGACAACATGGGCAAACTCTAAAT 58.920 37.500 0.00 0.00 0.00 1.40
2385 2905 6.493458 ACAACATGGGCAAACTCTAAATAAGT 59.507 34.615 0.00 0.00 0.00 2.24
2387 2907 7.539034 ACATGGGCAAACTCTAAATAAGTTT 57.461 32.000 0.00 0.00 45.41 2.66
2394 2914 5.977489 AACTCTAAATAAGTTTGGTGGCC 57.023 39.130 0.00 0.00 33.19 5.36
2395 2915 4.993028 ACTCTAAATAAGTTTGGTGGCCA 58.007 39.130 0.00 0.00 0.00 5.36
2397 2917 4.993028 TCTAAATAAGTTTGGTGGCCACT 58.007 39.130 33.91 16.68 30.78 4.00
2398 2918 6.129414 TCTAAATAAGTTTGGTGGCCACTA 57.871 37.500 33.91 27.34 30.78 2.74
2416 2936 6.038936 GGCCACTAACGGTGTATTAAATCAAT 59.961 38.462 0.00 0.00 43.94 2.57
2467 2987 4.785453 CCGACCTCAAGGCCCAGC 62.785 72.222 0.00 0.00 39.32 4.85
2474 2994 1.753073 CCTCAAGGCCCAGCAAAATAG 59.247 52.381 0.00 0.00 0.00 1.73
2506 3026 1.069358 GGCCCTTCGACCTATGAGAAG 59.931 57.143 0.00 0.00 40.58 2.85
2527 3047 1.903183 CCCTCCTTCCGAGAAGTTCTT 59.097 52.381 6.88 0.00 41.63 2.52
2528 3048 2.093921 CCCTCCTTCCGAGAAGTTCTTC 60.094 54.545 6.88 4.58 41.63 2.87
2535 3055 2.329379 CCGAGAAGTTCTTCGTCTTGG 58.671 52.381 6.88 3.50 45.06 3.61
2553 3073 3.202829 TGGTGTACAAGTCAAAGACCC 57.797 47.619 0.00 0.00 32.18 4.46
2554 3074 2.158726 TGGTGTACAAGTCAAAGACCCC 60.159 50.000 0.00 0.00 32.18 4.95
2555 3075 2.501261 GTGTACAAGTCAAAGACCCCC 58.499 52.381 0.00 0.00 32.18 5.40
2572 3092 3.639099 CCCCCATCCGATCTGATTG 57.361 57.895 0.00 0.00 0.00 2.67
2573 3093 0.767375 CCCCCATCCGATCTGATTGT 59.233 55.000 4.27 0.00 0.00 2.71
2574 3094 1.544093 CCCCCATCCGATCTGATTGTG 60.544 57.143 4.27 0.00 0.00 3.33
2575 3095 1.544093 CCCCATCCGATCTGATTGTGG 60.544 57.143 4.27 5.98 0.00 4.17
2576 3096 1.233019 CCATCCGATCTGATTGTGGC 58.767 55.000 4.27 0.00 0.00 5.01
2577 3097 1.202734 CCATCCGATCTGATTGTGGCT 60.203 52.381 4.27 0.00 0.00 4.75
2578 3098 2.141517 CATCCGATCTGATTGTGGCTC 58.858 52.381 4.27 0.00 0.00 4.70
2579 3099 1.489481 TCCGATCTGATTGTGGCTCT 58.511 50.000 4.27 0.00 0.00 4.09
2580 3100 2.666317 TCCGATCTGATTGTGGCTCTA 58.334 47.619 4.27 0.00 0.00 2.43
2581 3101 2.625314 TCCGATCTGATTGTGGCTCTAG 59.375 50.000 4.27 0.00 0.00 2.43
2582 3102 2.288702 CCGATCTGATTGTGGCTCTAGG 60.289 54.545 4.27 0.00 0.00 3.02
2583 3103 2.363680 CGATCTGATTGTGGCTCTAGGT 59.636 50.000 0.00 0.00 0.00 3.08
2584 3104 3.551863 CGATCTGATTGTGGCTCTAGGTC 60.552 52.174 0.00 0.00 0.00 3.85
2585 3105 1.751351 TCTGATTGTGGCTCTAGGTCG 59.249 52.381 0.00 0.00 0.00 4.79
2586 3106 0.824109 TGATTGTGGCTCTAGGTCGG 59.176 55.000 0.00 0.00 0.00 4.79
2587 3107 0.824759 GATTGTGGCTCTAGGTCGGT 59.175 55.000 0.00 0.00 0.00 4.69
2588 3108 1.207329 GATTGTGGCTCTAGGTCGGTT 59.793 52.381 0.00 0.00 0.00 4.44
2589 3109 0.606604 TTGTGGCTCTAGGTCGGTTC 59.393 55.000 0.00 0.00 0.00 3.62
2590 3110 1.139095 GTGGCTCTAGGTCGGTTCG 59.861 63.158 0.00 0.00 0.00 3.95
2591 3111 1.303888 TGGCTCTAGGTCGGTTCGT 60.304 57.895 0.00 0.00 0.00 3.85
2592 3112 0.035152 TGGCTCTAGGTCGGTTCGTA 60.035 55.000 0.00 0.00 0.00 3.43
2593 3113 0.662085 GGCTCTAGGTCGGTTCGTAG 59.338 60.000 0.00 0.00 0.00 3.51
2594 3114 0.662085 GCTCTAGGTCGGTTCGTAGG 59.338 60.000 0.00 0.00 0.00 3.18
2595 3115 1.745141 GCTCTAGGTCGGTTCGTAGGA 60.745 57.143 0.00 0.00 0.00 2.94
2596 3116 1.939255 CTCTAGGTCGGTTCGTAGGAC 59.061 57.143 0.00 0.00 0.00 3.85
2597 3117 0.654683 CTAGGTCGGTTCGTAGGACG 59.345 60.000 0.00 0.00 44.19 4.79
2598 3118 0.036388 TAGGTCGGTTCGTAGGACGT 60.036 55.000 0.00 0.00 43.14 4.34
2599 3119 1.154150 GGTCGGTTCGTAGGACGTG 60.154 63.158 0.00 0.00 43.14 4.49
2600 3120 1.576421 GTCGGTTCGTAGGACGTGT 59.424 57.895 0.00 0.00 43.14 4.49
2601 3121 0.727122 GTCGGTTCGTAGGACGTGTG 60.727 60.000 0.00 0.00 43.14 3.82
2602 3122 0.884259 TCGGTTCGTAGGACGTGTGA 60.884 55.000 0.00 0.00 43.14 3.58
2603 3123 0.727122 CGGTTCGTAGGACGTGTGAC 60.727 60.000 0.00 0.00 43.14 3.67
2604 3124 0.387750 GGTTCGTAGGACGTGTGACC 60.388 60.000 0.00 0.00 43.14 4.02
2605 3125 0.387750 GTTCGTAGGACGTGTGACCC 60.388 60.000 0.00 0.00 43.14 4.46
2606 3126 0.538057 TTCGTAGGACGTGTGACCCT 60.538 55.000 0.00 0.00 43.14 4.34
2607 3127 0.324614 TCGTAGGACGTGTGACCCTA 59.675 55.000 0.00 0.00 43.14 3.53
2608 3128 0.731417 CGTAGGACGTGTGACCCTAG 59.269 60.000 0.00 0.00 36.74 3.02
2609 3129 1.101331 GTAGGACGTGTGACCCTAGG 58.899 60.000 0.06 0.06 33.59 3.02
2610 3130 0.682209 TAGGACGTGTGACCCTAGGC 60.682 60.000 2.05 0.00 0.00 3.93
2611 3131 2.577593 GACGTGTGACCCTAGGCC 59.422 66.667 2.05 0.00 0.00 5.19
2612 3132 1.982938 GACGTGTGACCCTAGGCCT 60.983 63.158 11.78 11.78 0.00 5.19
2613 3133 1.946475 GACGTGTGACCCTAGGCCTC 61.946 65.000 9.68 0.00 0.00 4.70
2614 3134 2.893398 GTGTGACCCTAGGCCTCG 59.107 66.667 9.68 1.43 0.00 4.63
2615 3135 1.982938 GTGTGACCCTAGGCCTCGT 60.983 63.158 9.68 3.60 0.00 4.18
2616 3136 1.681327 TGTGACCCTAGGCCTCGTC 60.681 63.158 9.68 14.61 0.00 4.20
2617 3137 2.043248 TGACCCTAGGCCTCGTCC 60.043 66.667 9.68 0.00 0.00 4.79
2618 3138 2.838693 GACCCTAGGCCTCGTCCC 60.839 72.222 9.68 0.00 0.00 4.46
2619 3139 4.477119 ACCCTAGGCCTCGTCCCC 62.477 72.222 9.68 0.00 0.00 4.81
2621 3141 4.159108 CCTAGGCCTCGTCCCCCT 62.159 72.222 9.68 0.00 0.00 4.79
2622 3142 2.041819 CTAGGCCTCGTCCCCCTT 60.042 66.667 9.68 0.00 0.00 3.95
2623 3143 1.689582 CTAGGCCTCGTCCCCCTTT 60.690 63.158 9.68 0.00 0.00 3.11
2624 3144 0.398098 CTAGGCCTCGTCCCCCTTTA 60.398 60.000 9.68 0.00 0.00 1.85
2625 3145 0.266753 TAGGCCTCGTCCCCCTTTAT 59.733 55.000 9.68 0.00 0.00 1.40
2626 3146 0.266753 AGGCCTCGTCCCCCTTTATA 59.733 55.000 0.00 0.00 0.00 0.98
2627 3147 1.132495 AGGCCTCGTCCCCCTTTATAT 60.132 52.381 0.00 0.00 0.00 0.86
2628 3148 1.003233 GGCCTCGTCCCCCTTTATATG 59.997 57.143 0.00 0.00 0.00 1.78
2629 3149 1.003233 GCCTCGTCCCCCTTTATATGG 59.997 57.143 0.00 0.00 0.00 2.74
2630 3150 1.003233 CCTCGTCCCCCTTTATATGGC 59.997 57.143 0.00 0.00 0.00 4.40
2631 3151 0.682852 TCGTCCCCCTTTATATGGCG 59.317 55.000 0.00 0.00 0.00 5.69
2632 3152 0.682852 CGTCCCCCTTTATATGGCGA 59.317 55.000 0.00 0.00 0.00 5.54
2633 3153 1.337823 CGTCCCCCTTTATATGGCGAG 60.338 57.143 0.00 0.00 0.00 5.03
2634 3154 1.003233 GTCCCCCTTTATATGGCGAGG 59.997 57.143 0.00 0.00 0.00 4.63
2635 3155 1.064825 CCCCCTTTATATGGCGAGGT 58.935 55.000 0.00 0.00 0.00 3.85
2636 3156 1.003233 CCCCCTTTATATGGCGAGGTC 59.997 57.143 0.00 0.00 0.00 3.85
2637 3157 1.697432 CCCCTTTATATGGCGAGGTCA 59.303 52.381 0.00 0.00 0.00 4.02
2638 3158 2.289694 CCCCTTTATATGGCGAGGTCAG 60.290 54.545 0.00 0.00 0.00 3.51
2639 3159 2.289694 CCCTTTATATGGCGAGGTCAGG 60.290 54.545 0.00 0.00 0.00 3.86
2640 3160 2.289694 CCTTTATATGGCGAGGTCAGGG 60.290 54.545 0.00 0.00 0.00 4.45
2641 3161 1.348064 TTATATGGCGAGGTCAGGGG 58.652 55.000 0.00 0.00 0.00 4.79
2642 3162 0.190069 TATATGGCGAGGTCAGGGGT 59.810 55.000 0.00 0.00 0.00 4.95
2643 3163 0.190069 ATATGGCGAGGTCAGGGGTA 59.810 55.000 0.00 0.00 0.00 3.69
2644 3164 0.469331 TATGGCGAGGTCAGGGGTAG 60.469 60.000 0.00 0.00 0.00 3.18
2645 3165 2.363925 GGCGAGGTCAGGGGTAGT 60.364 66.667 0.00 0.00 0.00 2.73
2646 3166 1.988406 GGCGAGGTCAGGGGTAGTT 60.988 63.158 0.00 0.00 0.00 2.24
2647 3167 1.551019 GGCGAGGTCAGGGGTAGTTT 61.551 60.000 0.00 0.00 0.00 2.66
2648 3168 0.391263 GCGAGGTCAGGGGTAGTTTG 60.391 60.000 0.00 0.00 0.00 2.93
2649 3169 0.249398 CGAGGTCAGGGGTAGTTTGG 59.751 60.000 0.00 0.00 0.00 3.28
2650 3170 1.652947 GAGGTCAGGGGTAGTTTGGA 58.347 55.000 0.00 0.00 0.00 3.53
2651 3171 1.982958 GAGGTCAGGGGTAGTTTGGAA 59.017 52.381 0.00 0.00 0.00 3.53
2652 3172 2.576648 GAGGTCAGGGGTAGTTTGGAAT 59.423 50.000 0.00 0.00 0.00 3.01
2653 3173 2.576648 AGGTCAGGGGTAGTTTGGAATC 59.423 50.000 0.00 0.00 0.00 2.52
2654 3174 2.356844 GGTCAGGGGTAGTTTGGAATCC 60.357 54.545 0.00 0.00 0.00 3.01
2655 3175 1.920351 TCAGGGGTAGTTTGGAATCCC 59.080 52.381 0.00 0.00 37.59 3.85
2658 3178 2.437085 GGGTAGTTTGGAATCCCCTG 57.563 55.000 0.00 0.00 35.38 4.45
2659 3179 1.920351 GGGTAGTTTGGAATCCCCTGA 59.080 52.381 0.00 0.00 35.38 3.86
2660 3180 2.356844 GGGTAGTTTGGAATCCCCTGAC 60.357 54.545 0.00 0.00 35.38 3.51
2661 3181 2.307686 GGTAGTTTGGAATCCCCTGACA 59.692 50.000 0.00 0.00 35.38 3.58
2662 3182 3.053619 GGTAGTTTGGAATCCCCTGACAT 60.054 47.826 0.00 0.00 35.38 3.06
2663 3183 3.372440 AGTTTGGAATCCCCTGACATC 57.628 47.619 0.00 0.00 35.38 3.06
2664 3184 2.922283 AGTTTGGAATCCCCTGACATCT 59.078 45.455 0.00 0.00 35.38 2.90
2665 3185 4.111577 AGTTTGGAATCCCCTGACATCTA 58.888 43.478 0.00 0.00 35.38 1.98
2666 3186 4.080299 AGTTTGGAATCCCCTGACATCTAC 60.080 45.833 0.00 0.00 35.38 2.59
2667 3187 3.421394 TGGAATCCCCTGACATCTACT 57.579 47.619 0.00 0.00 35.38 2.57
2668 3188 3.309296 TGGAATCCCCTGACATCTACTC 58.691 50.000 0.00 0.00 35.38 2.59
2669 3189 3.309296 GGAATCCCCTGACATCTACTCA 58.691 50.000 0.00 0.00 0.00 3.41
2670 3190 3.906846 GGAATCCCCTGACATCTACTCAT 59.093 47.826 0.00 0.00 0.00 2.90
2671 3191 4.020662 GGAATCCCCTGACATCTACTCATC 60.021 50.000 0.00 0.00 0.00 2.92
2672 3192 2.587522 TCCCCTGACATCTACTCATCG 58.412 52.381 0.00 0.00 0.00 3.84
2673 3193 2.091830 TCCCCTGACATCTACTCATCGT 60.092 50.000 0.00 0.00 0.00 3.73
2674 3194 2.294791 CCCCTGACATCTACTCATCGTC 59.705 54.545 0.00 0.00 0.00 4.20
2675 3195 3.218453 CCCTGACATCTACTCATCGTCT 58.782 50.000 0.00 0.00 0.00 4.18
2676 3196 3.252215 CCCTGACATCTACTCATCGTCTC 59.748 52.174 0.00 0.00 0.00 3.36
2677 3197 3.059257 CCTGACATCTACTCATCGTCTCG 60.059 52.174 0.00 0.00 0.00 4.04
2678 3198 2.872858 TGACATCTACTCATCGTCTCGG 59.127 50.000 0.00 0.00 0.00 4.63
2679 3199 2.873472 GACATCTACTCATCGTCTCGGT 59.127 50.000 0.00 0.00 0.00 4.69
2680 3200 4.056740 GACATCTACTCATCGTCTCGGTA 58.943 47.826 0.00 0.00 0.00 4.02
2681 3201 4.059511 ACATCTACTCATCGTCTCGGTAG 58.940 47.826 0.00 0.00 33.37 3.18
2682 3202 2.481854 TCTACTCATCGTCTCGGTAGC 58.518 52.381 0.00 0.00 32.49 3.58
2683 3203 2.102757 TCTACTCATCGTCTCGGTAGCT 59.897 50.000 0.00 0.00 32.49 3.32
2684 3204 1.301423 ACTCATCGTCTCGGTAGCTC 58.699 55.000 0.00 0.00 0.00 4.09
2685 3205 0.589223 CTCATCGTCTCGGTAGCTCC 59.411 60.000 0.00 0.00 0.00 4.70
2686 3206 0.818445 TCATCGTCTCGGTAGCTCCC 60.818 60.000 0.00 0.00 0.00 4.30
2687 3207 1.101635 CATCGTCTCGGTAGCTCCCA 61.102 60.000 0.00 0.00 0.00 4.37
2688 3208 1.102222 ATCGTCTCGGTAGCTCCCAC 61.102 60.000 0.00 0.00 0.00 4.61
2689 3209 2.044555 CGTCTCGGTAGCTCCCACA 61.045 63.158 0.00 0.00 0.00 4.17
2690 3210 1.511768 GTCTCGGTAGCTCCCACAC 59.488 63.158 0.00 0.00 0.00 3.82
2691 3211 1.076014 TCTCGGTAGCTCCCACACA 59.924 57.895 0.00 0.00 0.00 3.72
2692 3212 0.324368 TCTCGGTAGCTCCCACACAT 60.324 55.000 0.00 0.00 0.00 3.21
2693 3213 1.064240 TCTCGGTAGCTCCCACACATA 60.064 52.381 0.00 0.00 0.00 2.29
2694 3214 1.964223 CTCGGTAGCTCCCACACATAT 59.036 52.381 0.00 0.00 0.00 1.78
2695 3215 2.365617 CTCGGTAGCTCCCACACATATT 59.634 50.000 0.00 0.00 0.00 1.28
2696 3216 2.102420 TCGGTAGCTCCCACACATATTG 59.898 50.000 0.00 0.00 0.00 1.90
2697 3217 2.158957 CGGTAGCTCCCACACATATTGT 60.159 50.000 0.00 0.00 39.97 2.71
2698 3218 3.069016 CGGTAGCTCCCACACATATTGTA 59.931 47.826 0.00 0.00 35.67 2.41
2699 3219 4.377897 GGTAGCTCCCACACATATTGTAC 58.622 47.826 0.00 0.00 35.67 2.90
2700 3220 3.560636 AGCTCCCACACATATTGTACC 57.439 47.619 0.00 0.00 35.67 3.34
2701 3221 2.172717 AGCTCCCACACATATTGTACCC 59.827 50.000 0.00 0.00 35.67 3.69
2702 3222 2.092646 GCTCCCACACATATTGTACCCA 60.093 50.000 0.00 0.00 35.67 4.51
2703 3223 3.435026 GCTCCCACACATATTGTACCCAT 60.435 47.826 0.00 0.00 35.67 4.00
2704 3224 4.136796 CTCCCACACATATTGTACCCATG 58.863 47.826 0.00 0.00 35.67 3.66
2705 3225 3.783082 TCCCACACATATTGTACCCATGA 59.217 43.478 0.00 0.00 35.67 3.07
2706 3226 4.136796 CCCACACATATTGTACCCATGAG 58.863 47.826 0.00 0.00 35.67 2.90
2707 3227 4.136796 CCACACATATTGTACCCATGAGG 58.863 47.826 0.00 0.00 35.67 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.025480 CAGGCAAAACTGACAAAGCATTTC 60.025 41.667 0.00 0.00 40.97 2.17
150 152 9.935241 ATAAGCCAGACATATACTCTATTGTTG 57.065 33.333 0.00 0.00 0.00 3.33
168 170 1.945394 GCAGGTCATCACATAAGCCAG 59.055 52.381 0.00 0.00 0.00 4.85
239 241 1.347221 GTAGGGCGCACGAAATTCG 59.653 57.895 14.35 14.35 46.93 3.34
246 248 3.254654 CATCACGTAGGGCGCACG 61.255 66.667 16.11 16.11 46.11 5.34
259 262 6.065976 ACTTGGAAGATACAATGGTCATCA 57.934 37.500 0.00 0.00 0.00 3.07
277 280 1.986882 AGGAAGAGGTTGCAACTTGG 58.013 50.000 27.64 0.00 0.00 3.61
286 289 9.997172 AAATGGAGAAAATATAAGGAAGAGGTT 57.003 29.630 0.00 0.00 0.00 3.50
302 395 2.083774 CCAGCTGCGTAAATGGAGAAA 58.916 47.619 8.66 0.00 34.60 2.52
305 398 1.667724 CTTCCAGCTGCGTAAATGGAG 59.332 52.381 8.66 0.00 42.54 3.86
326 419 8.721478 TCAGAAAAGAGTAACAGTAATGAATGC 58.279 33.333 0.00 0.00 0.00 3.56
341 667 8.787852 GTTGGTTTCATATCTTCAGAAAAGAGT 58.212 33.333 0.00 0.00 33.54 3.24
367 693 9.667107 TGTGGAGAAAATATTTACAGTTCTAGG 57.333 33.333 0.01 0.00 0.00 3.02
369 695 9.146984 CGTGTGGAGAAAATATTTACAGTTCTA 57.853 33.333 0.01 0.00 0.00 2.10
370 696 7.876068 TCGTGTGGAGAAAATATTTACAGTTCT 59.124 33.333 0.01 0.01 0.00 3.01
371 697 8.025243 TCGTGTGGAGAAAATATTTACAGTTC 57.975 34.615 0.01 0.00 0.00 3.01
372 698 7.972832 TCGTGTGGAGAAAATATTTACAGTT 57.027 32.000 0.01 0.00 0.00 3.16
373 699 7.414098 GCATCGTGTGGAGAAAATATTTACAGT 60.414 37.037 0.01 0.00 0.00 3.55
374 700 6.907212 GCATCGTGTGGAGAAAATATTTACAG 59.093 38.462 0.01 0.00 0.00 2.74
375 701 6.183360 GGCATCGTGTGGAGAAAATATTTACA 60.183 38.462 0.01 0.00 0.00 2.41
376 702 6.199393 GGCATCGTGTGGAGAAAATATTTAC 58.801 40.000 0.01 0.00 0.00 2.01
377 703 5.007234 CGGCATCGTGTGGAGAAAATATTTA 59.993 40.000 0.01 0.00 0.00 1.40
378 704 4.201910 CGGCATCGTGTGGAGAAAATATTT 60.202 41.667 0.00 0.00 0.00 1.40
379 705 3.312421 CGGCATCGTGTGGAGAAAATATT 59.688 43.478 0.00 0.00 0.00 1.28
380 706 2.872245 CGGCATCGTGTGGAGAAAATAT 59.128 45.455 0.00 0.00 0.00 1.28
381 707 2.276201 CGGCATCGTGTGGAGAAAATA 58.724 47.619 0.00 0.00 0.00 1.40
382 708 1.086696 CGGCATCGTGTGGAGAAAAT 58.913 50.000 0.00 0.00 0.00 1.82
383 709 1.573829 GCGGCATCGTGTGGAGAAAA 61.574 55.000 0.00 0.00 38.89 2.29
384 710 2.032634 GCGGCATCGTGTGGAGAAA 61.033 57.895 0.00 0.00 38.89 2.52
385 711 2.434185 GCGGCATCGTGTGGAGAA 60.434 61.111 0.00 0.00 38.89 2.87
386 712 1.671901 TATGCGGCATCGTGTGGAGA 61.672 55.000 20.34 0.00 38.89 3.71
387 713 0.601046 ATATGCGGCATCGTGTGGAG 60.601 55.000 20.34 0.00 38.89 3.86
388 714 0.879839 CATATGCGGCATCGTGTGGA 60.880 55.000 20.34 0.00 38.89 4.02
389 715 1.159713 ACATATGCGGCATCGTGTGG 61.160 55.000 24.30 11.46 38.89 4.17
390 716 1.496934 TACATATGCGGCATCGTGTG 58.503 50.000 29.13 21.38 38.89 3.82
391 717 2.232756 TTACATATGCGGCATCGTGT 57.767 45.000 26.48 26.48 38.89 4.49
392 718 3.811722 ATTTACATATGCGGCATCGTG 57.188 42.857 20.34 20.28 38.89 4.35
393 719 6.494893 AAATATTTACATATGCGGCATCGT 57.505 33.333 20.34 19.13 38.89 3.73
394 720 7.243487 AGAAAATATTTACATATGCGGCATCG 58.757 34.615 20.34 14.25 39.81 3.84
395 721 9.490663 GTAGAAAATATTTACATATGCGGCATC 57.509 33.333 20.34 0.21 0.00 3.91
396 722 9.008965 TGTAGAAAATATTTACATATGCGGCAT 57.991 29.630 20.57 20.57 0.00 4.40
397 723 8.286800 GTGTAGAAAATATTTACATATGCGGCA 58.713 33.333 4.58 4.58 30.79 5.69
398 724 7.749126 GGTGTAGAAAATATTTACATATGCGGC 59.251 37.037 1.58 0.00 30.79 6.53
399 725 8.234546 GGGTGTAGAAAATATTTACATATGCGG 58.765 37.037 1.58 0.00 30.79 5.69
400 726 7.955324 CGGGTGTAGAAAATATTTACATATGCG 59.045 37.037 1.58 0.00 30.79 4.73
401 727 8.780249 ACGGGTGTAGAAAATATTTACATATGC 58.220 33.333 1.58 0.00 30.79 3.14
407 733 9.476761 CGTAAAACGGGTGTAGAAAATATTTAC 57.523 33.333 0.01 0.00 38.08 2.01
438 764 1.670791 TTCGGCAGAAACCTTCGTTT 58.329 45.000 0.00 0.00 44.99 3.60
439 765 1.670791 TTTCGGCAGAAACCTTCGTT 58.329 45.000 8.00 0.00 41.06 3.85
440 766 1.670791 TTTTCGGCAGAAACCTTCGT 58.329 45.000 11.74 0.00 45.11 3.85
441 767 2.989422 ATTTTCGGCAGAAACCTTCG 57.011 45.000 11.74 0.00 45.11 3.79
442 768 4.759516 TGTATTTTCGGCAGAAACCTTC 57.240 40.909 11.74 4.26 45.11 3.46
443 769 5.722021 AATGTATTTTCGGCAGAAACCTT 57.278 34.783 11.74 3.14 45.11 3.50
444 770 5.242838 TGAAATGTATTTTCGGCAGAAACCT 59.757 36.000 11.74 5.33 45.63 3.50
445 771 5.344933 GTGAAATGTATTTTCGGCAGAAACC 59.655 40.000 11.74 4.06 45.63 3.27
446 772 5.918011 TGTGAAATGTATTTTCGGCAGAAAC 59.082 36.000 11.74 2.35 45.63 2.78
489 815 5.572896 GGTGTCATTCCGTCATGAAATTTTC 59.427 40.000 0.00 2.05 34.89 2.29
490 816 5.243730 AGGTGTCATTCCGTCATGAAATTTT 59.756 36.000 0.00 0.00 34.89 1.82
513 866 9.130312 GTTCAGACTGTATTTTCTACACTACAG 57.870 37.037 1.59 6.95 44.18 2.74
514 867 8.857098 AGTTCAGACTGTATTTTCTACACTACA 58.143 33.333 1.59 0.00 33.99 2.74
538 891 9.543783 GACCAAAATCTCTACGGAATAATAAGT 57.456 33.333 0.00 0.00 0.00 2.24
545 898 7.703058 AAAATGACCAAAATCTCTACGGAAT 57.297 32.000 0.00 0.00 0.00 3.01
546 899 7.367285 CAAAAATGACCAAAATCTCTACGGAA 58.633 34.615 0.00 0.00 0.00 4.30
547 900 6.569610 GCAAAAATGACCAAAATCTCTACGGA 60.570 38.462 0.00 0.00 0.00 4.69
548 901 5.572896 GCAAAAATGACCAAAATCTCTACGG 59.427 40.000 0.00 0.00 0.00 4.02
549 902 5.572896 GGCAAAAATGACCAAAATCTCTACG 59.427 40.000 0.00 0.00 0.00 3.51
552 905 5.813513 AGGCAAAAATGACCAAAATCTCT 57.186 34.783 0.00 0.00 0.00 3.10
553 906 6.924111 TCTAGGCAAAAATGACCAAAATCTC 58.076 36.000 0.00 0.00 0.00 2.75
554 907 6.916360 TCTAGGCAAAAATGACCAAAATCT 57.084 33.333 0.00 0.00 0.00 2.40
561 959 3.785486 GGCATTCTAGGCAAAAATGACC 58.215 45.455 5.52 3.31 33.20 4.02
584 982 3.690460 AGAAATGAGTCAATGACACCCC 58.310 45.455 16.38 2.55 34.60 4.95
602 1000 5.405571 GCTCTGTATGAAGTTTCACGAAGAA 59.594 40.000 0.00 0.00 40.49 2.52
603 1001 4.923871 GCTCTGTATGAAGTTTCACGAAGA 59.076 41.667 0.00 0.55 40.49 2.87
607 1005 4.237724 TCTGCTCTGTATGAAGTTTCACG 58.762 43.478 0.00 0.00 40.49 4.35
608 1006 6.402983 CCATTCTGCTCTGTATGAAGTTTCAC 60.403 42.308 0.00 0.00 40.49 3.18
610 1008 5.645497 ACCATTCTGCTCTGTATGAAGTTTC 59.355 40.000 0.00 0.00 0.00 2.78
657 1071 9.786105 GGCAAAATTCAGAAAAATTGAAAAAGA 57.214 25.926 9.11 0.00 38.01 2.52
658 1072 9.022915 GGGCAAAATTCAGAAAAATTGAAAAAG 57.977 29.630 9.11 0.00 38.01 2.27
676 1090 3.006752 TCTGAGAAAAATGCGGGCAAAAT 59.993 39.130 0.00 0.00 0.00 1.82
770 1255 5.505780 TGATATTGGTTTCGACCCTTGAAT 58.494 37.500 2.25 0.00 0.00 2.57
841 1326 3.564235 TCACGTATGTATCGGCATACC 57.436 47.619 15.01 0.00 44.93 2.73
850 1335 5.465051 GCTCATGAGTCATCACGTATGTAT 58.535 41.667 23.38 0.00 38.57 2.29
853 1338 3.055591 GGCTCATGAGTCATCACGTATG 58.944 50.000 22.39 0.00 38.57 2.39
854 1339 2.695147 TGGCTCATGAGTCATCACGTAT 59.305 45.455 25.86 0.00 38.26 3.06
855 1340 2.099405 TGGCTCATGAGTCATCACGTA 58.901 47.619 25.86 1.15 38.26 3.57
856 1341 0.897621 TGGCTCATGAGTCATCACGT 59.102 50.000 25.86 0.00 38.26 4.49
857 1342 1.662629 GTTGGCTCATGAGTCATCACG 59.337 52.381 29.51 0.04 43.30 4.35
858 1343 2.983229 AGTTGGCTCATGAGTCATCAC 58.017 47.619 30.36 25.41 43.30 3.06
859 1344 3.431346 GCTAGTTGGCTCATGAGTCATCA 60.431 47.826 30.36 17.14 43.30 3.07
860 1345 3.129871 GCTAGTTGGCTCATGAGTCATC 58.870 50.000 29.51 26.80 43.30 2.92
861 1346 2.158842 GGCTAGTTGGCTCATGAGTCAT 60.159 50.000 29.51 18.56 43.30 3.06
862 1347 1.208052 GGCTAGTTGGCTCATGAGTCA 59.792 52.381 25.86 25.86 41.97 3.41
863 1348 1.208052 TGGCTAGTTGGCTCATGAGTC 59.792 52.381 20.65 20.65 42.34 3.36
979 1472 4.891037 GGGGGATCAGCAGCAGGC 62.891 72.222 0.00 0.00 45.30 4.85
1800 2305 1.766143 GCCGGATCGCAGTTCATCAC 61.766 60.000 5.05 0.00 0.00 3.06
1816 2324 1.503818 AAACTACCAGCACAACGCCG 61.504 55.000 0.00 0.00 44.04 6.46
1848 2356 5.487433 TGAAACCAGAAGCGAGATCAATAA 58.513 37.500 0.00 0.00 0.00 1.40
1921 2441 1.200716 GTGTGAGTGCCCATGTTCATG 59.799 52.381 5.88 5.88 0.00 3.07
1940 2460 6.093633 GTCACAAGTAAGAAAGAACTGGTTGT 59.906 38.462 0.00 0.00 26.89 3.32
1941 2461 6.316390 AGTCACAAGTAAGAAAGAACTGGTTG 59.684 38.462 0.00 0.00 26.89 3.77
1942 2462 6.415573 AGTCACAAGTAAGAAAGAACTGGTT 58.584 36.000 0.00 0.00 26.89 3.67
1944 2464 7.872993 TGATAGTCACAAGTAAGAAAGAACTGG 59.127 37.037 0.00 0.00 0.00 4.00
1945 2465 8.818141 TGATAGTCACAAGTAAGAAAGAACTG 57.182 34.615 0.00 0.00 0.00 3.16
1948 2468 9.219603 CCATTGATAGTCACAAGTAAGAAAGAA 57.780 33.333 0.00 0.00 0.00 2.52
1949 2469 8.375506 ACCATTGATAGTCACAAGTAAGAAAGA 58.624 33.333 0.00 0.00 0.00 2.52
1950 2470 8.553459 ACCATTGATAGTCACAAGTAAGAAAG 57.447 34.615 0.00 0.00 0.00 2.62
1951 2471 8.918202 AACCATTGATAGTCACAAGTAAGAAA 57.082 30.769 0.00 0.00 0.00 2.52
1952 2472 8.918202 AAACCATTGATAGTCACAAGTAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
1957 2477 7.936847 TGTTCTAAACCATTGATAGTCACAAGT 59.063 33.333 0.00 0.00 0.00 3.16
1971 2491 6.659242 AGACCAAATCGAATGTTCTAAACCAT 59.341 34.615 0.66 0.00 0.00 3.55
1983 2503 2.552315 ACGTTTGCAGACCAAATCGAAT 59.448 40.909 1.16 0.00 44.61 3.34
2034 2554 3.054655 AGGTGGGTATTGAGCAAACGTAT 60.055 43.478 0.00 0.00 0.00 3.06
2097 2617 5.465390 CGACTTTGACTATTGTTGAAGGACA 59.535 40.000 7.90 0.00 0.00 4.02
2098 2618 5.465724 ACGACTTTGACTATTGTTGAAGGAC 59.534 40.000 0.00 3.02 0.00 3.85
2099 2619 5.607477 ACGACTTTGACTATTGTTGAAGGA 58.393 37.500 0.00 0.00 0.00 3.36
2140 2660 2.398252 CCTAACGAGAGGGGGAAAAC 57.602 55.000 0.00 0.00 32.39 2.43
2153 2673 3.006537 TGAGAGGAGTCAAAACCCTAACG 59.993 47.826 0.00 0.00 0.00 3.18
2182 2702 1.561769 ATGGATGGGCTCAACACGGA 61.562 55.000 0.00 0.00 0.00 4.69
2183 2703 1.077501 ATGGATGGGCTCAACACGG 60.078 57.895 0.00 0.00 0.00 4.94
2184 2704 1.097547 GGATGGATGGGCTCAACACG 61.098 60.000 0.00 0.00 0.00 4.49
2185 2705 0.753111 GGGATGGATGGGCTCAACAC 60.753 60.000 0.00 0.00 0.00 3.32
2186 2706 1.614711 GGGATGGATGGGCTCAACA 59.385 57.895 0.00 0.00 0.00 3.33
2187 2707 1.152673 GGGGATGGATGGGCTCAAC 60.153 63.158 0.00 0.00 0.00 3.18
2188 2708 1.309013 AGGGGATGGATGGGCTCAA 60.309 57.895 0.00 0.00 0.00 3.02
2189 2709 1.771746 GAGGGGATGGATGGGCTCA 60.772 63.158 0.00 0.00 0.00 4.26
2190 2710 2.533463 GGAGGGGATGGATGGGCTC 61.533 68.421 0.00 0.00 0.00 4.70
2191 2711 2.451294 GGAGGGGATGGATGGGCT 60.451 66.667 0.00 0.00 0.00 5.19
2192 2712 3.584403 GGGAGGGGATGGATGGGC 61.584 72.222 0.00 0.00 0.00 5.36
2193 2713 1.849823 GAGGGAGGGGATGGATGGG 60.850 68.421 0.00 0.00 0.00 4.00
2194 2714 1.849823 GGAGGGAGGGGATGGATGG 60.850 68.421 0.00 0.00 0.00 3.51
2195 2715 1.073474 TGGAGGGAGGGGATGGATG 60.073 63.158 0.00 0.00 0.00 3.51
2196 2716 1.241327 CTGGAGGGAGGGGATGGAT 59.759 63.158 0.00 0.00 0.00 3.41
2197 2717 2.705410 CTGGAGGGAGGGGATGGA 59.295 66.667 0.00 0.00 0.00 3.41
2198 2718 3.174265 GCTGGAGGGAGGGGATGG 61.174 72.222 0.00 0.00 0.00 3.51
2199 2719 3.174265 GGCTGGAGGGAGGGGATG 61.174 72.222 0.00 0.00 0.00 3.51
2200 2720 4.888325 CGGCTGGAGGGAGGGGAT 62.888 72.222 0.00 0.00 0.00 3.85
2225 2745 4.689612 TGAAAGCGATATAAGAGCCCTT 57.310 40.909 0.00 0.00 36.43 3.95
2231 2751 7.491372 AGTCAAATCGTTGAAAGCGATATAAGA 59.509 33.333 0.00 0.00 46.68 2.10
2232 2752 7.621991 AGTCAAATCGTTGAAAGCGATATAAG 58.378 34.615 0.00 0.00 46.68 1.73
2234 2754 8.812147 ATAGTCAAATCGTTGAAAGCGATATA 57.188 30.769 0.00 0.00 46.68 0.86
2269 2789 0.839853 AGCTTGTCTGGCCTTCCTCT 60.840 55.000 3.32 0.00 0.00 3.69
2280 2800 0.896226 GTTCCGGGTCTAGCTTGTCT 59.104 55.000 0.00 0.00 0.00 3.41
2289 2809 6.943718 TGAAATAAGTTAATTGTTCCGGGTCT 59.056 34.615 0.00 0.00 0.00 3.85
2308 2828 4.139786 ACGAGCTCCTACCGTATGAAATA 58.860 43.478 8.47 0.00 34.52 1.40
2321 2841 3.330267 GACAAAATTCAGACGAGCTCCT 58.670 45.455 8.47 0.00 0.00 3.69
2344 2864 0.598562 TTGTCTCTCGAGCCACTGAC 59.401 55.000 7.81 10.70 0.00 3.51
2348 2868 1.354040 CATGTTGTCTCTCGAGCCAC 58.646 55.000 7.81 7.10 0.00 5.01
2349 2869 0.247460 CCATGTTGTCTCTCGAGCCA 59.753 55.000 7.81 1.09 0.00 4.75
2350 2870 0.460987 CCCATGTTGTCTCTCGAGCC 60.461 60.000 7.81 0.00 0.00 4.70
2356 2876 2.107204 AGAGTTTGCCCATGTTGTCTCT 59.893 45.455 0.00 0.00 0.00 3.10
2361 2881 6.924111 ACTTATTTAGAGTTTGCCCATGTTG 58.076 36.000 0.00 0.00 0.00 3.33
2362 2882 7.539034 AACTTATTTAGAGTTTGCCCATGTT 57.461 32.000 0.00 0.00 33.76 2.71
2381 2901 2.496111 CGTTAGTGGCCACCAAACTTA 58.504 47.619 32.62 18.89 34.18 2.24
2385 2905 0.820074 CACCGTTAGTGGCCACCAAA 60.820 55.000 32.29 23.14 43.26 3.28
2387 2907 2.428187 CACCGTTAGTGGCCACCA 59.572 61.111 32.29 17.54 43.26 4.17
2395 2915 7.066525 CCACCATTGATTTAATACACCGTTAGT 59.933 37.037 0.00 0.00 0.00 2.24
2397 2917 6.183360 GCCACCATTGATTTAATACACCGTTA 60.183 38.462 0.00 0.00 0.00 3.18
2398 2918 5.393678 GCCACCATTGATTTAATACACCGTT 60.394 40.000 0.00 0.00 0.00 4.44
2453 2973 0.178924 ATTTTGCTGGGCCTTGAGGT 60.179 50.000 4.53 0.00 37.57 3.85
2479 2999 3.081409 GTCGAAGGGCCCTGGCTA 61.081 66.667 29.50 10.31 41.60 3.93
2506 3026 0.108089 GAACTTCTCGGAAGGAGGGC 60.108 60.000 15.24 0.00 43.34 5.19
2535 3055 2.501261 GGGGGTCTTTGACTTGTACAC 58.499 52.381 0.00 0.00 32.47 2.90
2554 3074 0.767375 ACAATCAGATCGGATGGGGG 59.233 55.000 13.92 5.63 0.00 5.40
2555 3075 1.544093 CCACAATCAGATCGGATGGGG 60.544 57.143 13.92 9.99 0.00 4.96
2556 3076 1.888215 CCACAATCAGATCGGATGGG 58.112 55.000 13.92 10.13 0.00 4.00
2557 3077 1.202734 AGCCACAATCAGATCGGATGG 60.203 52.381 9.22 8.86 0.00 3.51
2558 3078 2.141517 GAGCCACAATCAGATCGGATG 58.858 52.381 9.22 6.46 0.00 3.51
2559 3079 2.045524 AGAGCCACAATCAGATCGGAT 58.954 47.619 2.13 2.13 0.00 4.18
2560 3080 1.489481 AGAGCCACAATCAGATCGGA 58.511 50.000 0.00 0.00 0.00 4.55
2561 3081 2.288702 CCTAGAGCCACAATCAGATCGG 60.289 54.545 0.00 0.00 0.00 4.18
2562 3082 2.363680 ACCTAGAGCCACAATCAGATCG 59.636 50.000 0.00 0.00 0.00 3.69
2563 3083 3.551863 CGACCTAGAGCCACAATCAGATC 60.552 52.174 0.00 0.00 0.00 2.75
2564 3084 2.363680 CGACCTAGAGCCACAATCAGAT 59.636 50.000 0.00 0.00 0.00 2.90
2565 3085 1.751351 CGACCTAGAGCCACAATCAGA 59.249 52.381 0.00 0.00 0.00 3.27
2566 3086 1.202463 CCGACCTAGAGCCACAATCAG 60.202 57.143 0.00 0.00 0.00 2.90
2567 3087 0.824109 CCGACCTAGAGCCACAATCA 59.176 55.000 0.00 0.00 0.00 2.57
2568 3088 0.824759 ACCGACCTAGAGCCACAATC 59.175 55.000 0.00 0.00 0.00 2.67
2569 3089 1.207329 GAACCGACCTAGAGCCACAAT 59.793 52.381 0.00 0.00 0.00 2.71
2570 3090 0.606604 GAACCGACCTAGAGCCACAA 59.393 55.000 0.00 0.00 0.00 3.33
2571 3091 1.592400 CGAACCGACCTAGAGCCACA 61.592 60.000 0.00 0.00 0.00 4.17
2572 3092 1.139095 CGAACCGACCTAGAGCCAC 59.861 63.158 0.00 0.00 0.00 5.01
2573 3093 0.035152 TACGAACCGACCTAGAGCCA 60.035 55.000 0.00 0.00 0.00 4.75
2574 3094 0.662085 CTACGAACCGACCTAGAGCC 59.338 60.000 0.00 0.00 0.00 4.70
2575 3095 0.662085 CCTACGAACCGACCTAGAGC 59.338 60.000 0.00 0.00 0.00 4.09
2576 3096 1.939255 GTCCTACGAACCGACCTAGAG 59.061 57.143 0.00 0.00 0.00 2.43
2577 3097 1.740380 CGTCCTACGAACCGACCTAGA 60.740 57.143 0.00 0.00 46.05 2.43
2578 3098 0.654683 CGTCCTACGAACCGACCTAG 59.345 60.000 0.00 0.00 46.05 3.02
2579 3099 0.036388 ACGTCCTACGAACCGACCTA 60.036 55.000 6.44 0.00 46.05 3.08
2580 3100 1.302832 ACGTCCTACGAACCGACCT 60.303 57.895 6.44 0.00 46.05 3.85
2581 3101 1.154150 CACGTCCTACGAACCGACC 60.154 63.158 6.44 0.00 46.05 4.79
2582 3102 0.727122 CACACGTCCTACGAACCGAC 60.727 60.000 6.44 0.00 46.05 4.79
2583 3103 0.884259 TCACACGTCCTACGAACCGA 60.884 55.000 6.44 0.00 46.05 4.69
2584 3104 0.727122 GTCACACGTCCTACGAACCG 60.727 60.000 6.44 0.00 46.05 4.44
2585 3105 0.387750 GGTCACACGTCCTACGAACC 60.388 60.000 6.44 4.75 46.05 3.62
2586 3106 0.387750 GGGTCACACGTCCTACGAAC 60.388 60.000 6.44 0.00 46.05 3.95
2587 3107 0.538057 AGGGTCACACGTCCTACGAA 60.538 55.000 6.44 0.00 46.05 3.85
2588 3108 0.324614 TAGGGTCACACGTCCTACGA 59.675 55.000 6.44 0.00 46.05 3.43
2590 3110 1.101331 CCTAGGGTCACACGTCCTAC 58.899 60.000 0.00 0.00 32.46 3.18
2591 3111 0.682209 GCCTAGGGTCACACGTCCTA 60.682 60.000 11.72 0.54 32.46 2.94
2592 3112 1.982938 GCCTAGGGTCACACGTCCT 60.983 63.158 11.72 0.00 34.85 3.85
2593 3113 2.577593 GCCTAGGGTCACACGTCC 59.422 66.667 11.72 0.00 0.00 4.79
2594 3114 1.946475 GAGGCCTAGGGTCACACGTC 61.946 65.000 4.42 0.00 0.00 4.34
2595 3115 1.982938 GAGGCCTAGGGTCACACGT 60.983 63.158 4.42 0.00 0.00 4.49
2596 3116 2.893398 GAGGCCTAGGGTCACACG 59.107 66.667 4.42 0.00 0.00 4.49
2597 3117 1.946475 GACGAGGCCTAGGGTCACAC 61.946 65.000 17.90 0.00 0.00 3.82
2598 3118 1.681327 GACGAGGCCTAGGGTCACA 60.681 63.158 17.90 0.00 0.00 3.58
2599 3119 2.424733 GGACGAGGCCTAGGGTCAC 61.425 68.421 24.44 14.46 0.00 3.67
2600 3120 2.043248 GGACGAGGCCTAGGGTCA 60.043 66.667 24.44 0.00 0.00 4.02
2601 3121 2.838693 GGGACGAGGCCTAGGGTC 60.839 72.222 17.90 18.13 0.00 4.46
2602 3122 4.477119 GGGGACGAGGCCTAGGGT 62.477 72.222 17.90 10.51 0.00 4.34
2604 3124 3.698263 AAGGGGGACGAGGCCTAGG 62.698 68.421 17.90 3.67 0.00 3.02
2605 3125 0.398098 TAAAGGGGGACGAGGCCTAG 60.398 60.000 4.42 8.81 0.00 3.02
2606 3126 0.266753 ATAAAGGGGGACGAGGCCTA 59.733 55.000 4.42 0.00 0.00 3.93
2607 3127 0.266753 TATAAAGGGGGACGAGGCCT 59.733 55.000 3.86 3.86 0.00 5.19
2608 3128 1.003233 CATATAAAGGGGGACGAGGCC 59.997 57.143 0.00 0.00 0.00 5.19
2609 3129 1.003233 CCATATAAAGGGGGACGAGGC 59.997 57.143 0.00 0.00 0.00 4.70
2610 3130 1.003233 GCCATATAAAGGGGGACGAGG 59.997 57.143 0.00 0.00 0.00 4.63
2611 3131 1.337823 CGCCATATAAAGGGGGACGAG 60.338 57.143 0.00 0.00 41.73 4.18
2612 3132 0.682852 CGCCATATAAAGGGGGACGA 59.317 55.000 0.00 0.00 41.73 4.20
2613 3133 0.682852 TCGCCATATAAAGGGGGACG 59.317 55.000 10.48 0.00 42.84 4.79
2614 3134 1.003233 CCTCGCCATATAAAGGGGGAC 59.997 57.143 10.48 0.00 42.84 4.46
2615 3135 1.358152 CCTCGCCATATAAAGGGGGA 58.642 55.000 10.48 9.02 45.16 4.81
2616 3136 1.003233 GACCTCGCCATATAAAGGGGG 59.997 57.143 10.48 5.75 40.63 5.40
2617 3137 1.697432 TGACCTCGCCATATAAAGGGG 59.303 52.381 5.56 5.56 40.19 4.79
2618 3138 2.289694 CCTGACCTCGCCATATAAAGGG 60.290 54.545 0.00 0.00 32.97 3.95
2619 3139 2.289694 CCCTGACCTCGCCATATAAAGG 60.290 54.545 0.00 0.00 34.94 3.11
2620 3140 2.289694 CCCCTGACCTCGCCATATAAAG 60.290 54.545 0.00 0.00 0.00 1.85
2621 3141 1.697432 CCCCTGACCTCGCCATATAAA 59.303 52.381 0.00 0.00 0.00 1.40
2622 3142 1.348064 CCCCTGACCTCGCCATATAA 58.652 55.000 0.00 0.00 0.00 0.98
2623 3143 0.190069 ACCCCTGACCTCGCCATATA 59.810 55.000 0.00 0.00 0.00 0.86
2624 3144 0.190069 TACCCCTGACCTCGCCATAT 59.810 55.000 0.00 0.00 0.00 1.78
2625 3145 0.469331 CTACCCCTGACCTCGCCATA 60.469 60.000 0.00 0.00 0.00 2.74
2626 3146 1.762460 CTACCCCTGACCTCGCCAT 60.762 63.158 0.00 0.00 0.00 4.40
2627 3147 2.363795 CTACCCCTGACCTCGCCA 60.364 66.667 0.00 0.00 0.00 5.69
2628 3148 1.551019 AAACTACCCCTGACCTCGCC 61.551 60.000 0.00 0.00 0.00 5.54
2629 3149 0.391263 CAAACTACCCCTGACCTCGC 60.391 60.000 0.00 0.00 0.00 5.03
2630 3150 0.249398 CCAAACTACCCCTGACCTCG 59.751 60.000 0.00 0.00 0.00 4.63
2631 3151 1.652947 TCCAAACTACCCCTGACCTC 58.347 55.000 0.00 0.00 0.00 3.85
2632 3152 2.127651 TTCCAAACTACCCCTGACCT 57.872 50.000 0.00 0.00 0.00 3.85
2633 3153 2.356844 GGATTCCAAACTACCCCTGACC 60.357 54.545 0.00 0.00 0.00 4.02
2634 3154 2.356844 GGGATTCCAAACTACCCCTGAC 60.357 54.545 4.80 0.00 35.00 3.51
2635 3155 1.920351 GGGATTCCAAACTACCCCTGA 59.080 52.381 4.80 0.00 35.00 3.86
2636 3156 2.437085 GGGATTCCAAACTACCCCTG 57.563 55.000 4.80 0.00 35.00 4.45
2639 3159 1.920351 TCAGGGGATTCCAAACTACCC 59.080 52.381 4.80 0.00 39.79 3.69
2640 3160 2.307686 TGTCAGGGGATTCCAAACTACC 59.692 50.000 4.80 0.00 38.24 3.18
2641 3161 3.713826 TGTCAGGGGATTCCAAACTAC 57.286 47.619 4.80 0.00 38.24 2.73
2642 3162 4.111577 AGATGTCAGGGGATTCCAAACTA 58.888 43.478 4.80 0.00 38.24 2.24
2643 3163 2.922283 AGATGTCAGGGGATTCCAAACT 59.078 45.455 4.80 0.00 38.24 2.66
2644 3164 3.372440 AGATGTCAGGGGATTCCAAAC 57.628 47.619 4.80 0.00 38.24 2.93
2645 3165 4.111577 AGTAGATGTCAGGGGATTCCAAA 58.888 43.478 4.80 0.00 38.24 3.28
2646 3166 3.711704 GAGTAGATGTCAGGGGATTCCAA 59.288 47.826 4.80 0.00 38.24 3.53
2647 3167 3.309296 GAGTAGATGTCAGGGGATTCCA 58.691 50.000 4.80 0.00 38.24 3.53
2648 3168 3.309296 TGAGTAGATGTCAGGGGATTCC 58.691 50.000 0.00 0.00 0.00 3.01
2649 3169 4.321601 CGATGAGTAGATGTCAGGGGATTC 60.322 50.000 0.00 0.00 0.00 2.52
2650 3170 3.576118 CGATGAGTAGATGTCAGGGGATT 59.424 47.826 0.00 0.00 0.00 3.01
2651 3171 3.161067 CGATGAGTAGATGTCAGGGGAT 58.839 50.000 0.00 0.00 0.00 3.85
2652 3172 2.091830 ACGATGAGTAGATGTCAGGGGA 60.092 50.000 0.00 0.00 0.00 4.81
2653 3173 2.294791 GACGATGAGTAGATGTCAGGGG 59.705 54.545 0.00 0.00 0.00 4.79
2654 3174 3.218453 AGACGATGAGTAGATGTCAGGG 58.782 50.000 0.00 0.00 32.08 4.45
2655 3175 3.059257 CGAGACGATGAGTAGATGTCAGG 60.059 52.174 0.00 0.00 32.08 3.86
2656 3176 3.059257 CCGAGACGATGAGTAGATGTCAG 60.059 52.174 0.00 0.00 32.08 3.51
2657 3177 2.872858 CCGAGACGATGAGTAGATGTCA 59.127 50.000 0.00 0.00 32.08 3.58
2658 3178 2.873472 ACCGAGACGATGAGTAGATGTC 59.127 50.000 0.00 0.00 0.00 3.06
2659 3179 2.920524 ACCGAGACGATGAGTAGATGT 58.079 47.619 0.00 0.00 0.00 3.06
2660 3180 3.120477 GCTACCGAGACGATGAGTAGATG 60.120 52.174 0.00 0.00 33.75 2.90
2661 3181 3.068560 GCTACCGAGACGATGAGTAGAT 58.931 50.000 0.00 0.00 33.75 1.98
2662 3182 2.102757 AGCTACCGAGACGATGAGTAGA 59.897 50.000 0.00 0.00 33.75 2.59
2663 3183 2.477375 GAGCTACCGAGACGATGAGTAG 59.523 54.545 0.00 0.00 34.78 2.57
2664 3184 2.481854 GAGCTACCGAGACGATGAGTA 58.518 52.381 0.00 0.00 0.00 2.59
2665 3185 1.301423 GAGCTACCGAGACGATGAGT 58.699 55.000 0.00 0.00 0.00 3.41
2666 3186 0.589223 GGAGCTACCGAGACGATGAG 59.411 60.000 0.00 0.00 0.00 2.90
2667 3187 0.818445 GGGAGCTACCGAGACGATGA 60.818 60.000 0.00 0.00 40.11 2.92
2668 3188 1.101635 TGGGAGCTACCGAGACGATG 61.102 60.000 11.35 0.00 40.11 3.84
2669 3189 1.102222 GTGGGAGCTACCGAGACGAT 61.102 60.000 11.35 0.00 40.11 3.73
2670 3190 1.748122 GTGGGAGCTACCGAGACGA 60.748 63.158 11.35 0.00 40.11 4.20
2671 3191 2.044555 TGTGGGAGCTACCGAGACG 61.045 63.158 11.35 0.00 40.11 4.18
2672 3192 1.248785 TGTGTGGGAGCTACCGAGAC 61.249 60.000 11.35 8.99 40.16 3.36
2673 3193 0.324368 ATGTGTGGGAGCTACCGAGA 60.324 55.000 11.35 0.00 40.11 4.04
2674 3194 1.399714 TATGTGTGGGAGCTACCGAG 58.600 55.000 11.35 0.00 40.11 4.63
2675 3195 2.082140 ATATGTGTGGGAGCTACCGA 57.918 50.000 11.35 0.00 40.11 4.69
2676 3196 2.158957 ACAATATGTGTGGGAGCTACCG 60.159 50.000 11.35 0.00 39.72 4.02
2677 3197 3.560636 ACAATATGTGTGGGAGCTACC 57.439 47.619 8.55 8.55 39.72 3.18
2678 3198 4.377897 GGTACAATATGTGTGGGAGCTAC 58.622 47.826 0.00 0.00 41.89 3.58
2679 3199 3.389983 GGGTACAATATGTGTGGGAGCTA 59.610 47.826 0.00 0.00 41.89 3.32
2680 3200 2.172717 GGGTACAATATGTGTGGGAGCT 59.827 50.000 0.00 0.00 41.89 4.09
2681 3201 2.092646 TGGGTACAATATGTGTGGGAGC 60.093 50.000 0.00 0.00 41.89 4.70
2682 3202 3.924114 TGGGTACAATATGTGTGGGAG 57.076 47.619 0.00 0.00 41.89 4.30
2683 3203 3.783082 TCATGGGTACAATATGTGTGGGA 59.217 43.478 0.00 0.00 41.89 4.37
2684 3204 4.136796 CTCATGGGTACAATATGTGTGGG 58.863 47.826 0.00 0.00 41.89 4.61
2685 3205 4.136796 CCTCATGGGTACAATATGTGTGG 58.863 47.826 0.00 0.00 41.89 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.