Multiple sequence alignment - TraesCS3D01G136700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G136700 chr3D 100.000 3563 0 0 1 3563 95247578 95244016 0.000000e+00 6580
1 TraesCS3D01G136700 chr3D 81.647 692 123 4 1088 1777 409021998 409021309 3.990000e-159 571
2 TraesCS3D01G136700 chr3B 94.137 3070 103 38 1 3040 146184192 146181170 0.000000e+00 4601
3 TraesCS3D01G136700 chr3B 81.503 692 124 4 1088 1777 534965465 534964776 1.860000e-157 566
4 TraesCS3D01G136700 chr3B 89.286 308 27 4 3134 3436 191186855 191186549 7.220000e-102 381
5 TraesCS3D01G136700 chr3A 91.556 2404 109 50 638 2987 113342833 113340470 0.000000e+00 3229
6 TraesCS3D01G136700 chr3A 86.271 641 53 19 1 623 113343444 113342821 0.000000e+00 664
7 TraesCS3D01G136700 chr3A 81.936 692 121 4 1088 1777 542202774 542203463 1.840000e-162 582
8 TraesCS3D01G136700 chr1A 82.100 743 124 8 1084 1822 521629150 521629887 8.400000e-176 627
9 TraesCS3D01G136700 chr1D 83.410 651 100 7 1131 1777 426587031 426587677 6.580000e-167 597
10 TraesCS3D01G136700 chr1B 82.066 697 117 7 1084 1777 576205533 576206224 3.960000e-164 588
11 TraesCS3D01G136700 chr7D 90.132 304 25 3 3137 3436 82851435 82851133 1.200000e-104 390
12 TraesCS3D01G136700 chr2A 89.644 309 24 6 3137 3439 743327490 743327796 1.550000e-103 387
13 TraesCS3D01G136700 chr2A 89.508 305 26 4 3137 3436 434580263 434579960 7.220000e-102 381
14 TraesCS3D01G136700 chr5A 89.542 306 26 4 3137 3437 64980813 64980509 2.010000e-102 383
15 TraesCS3D01G136700 chr2D 89.320 309 27 4 3134 3438 618294473 618294779 2.010000e-102 383
16 TraesCS3D01G136700 chr5B 89.542 306 24 7 3137 3437 635258642 635258944 7.220000e-102 381
17 TraesCS3D01G136700 chr6B 89.286 308 24 7 3137 3437 675395933 675396238 9.340000e-101 377
18 TraesCS3D01G136700 chr2B 89.251 307 25 6 3137 3437 122264634 122264330 9.340000e-101 377
19 TraesCS3D01G136700 chr4B 75.190 657 142 17 1068 1711 132167658 132167010 1.250000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G136700 chr3D 95244016 95247578 3562 True 6580.0 6580 100.0000 1 3563 1 chr3D.!!$R1 3562
1 TraesCS3D01G136700 chr3D 409021309 409021998 689 True 571.0 571 81.6470 1088 1777 1 chr3D.!!$R2 689
2 TraesCS3D01G136700 chr3B 146181170 146184192 3022 True 4601.0 4601 94.1370 1 3040 1 chr3B.!!$R1 3039
3 TraesCS3D01G136700 chr3B 534964776 534965465 689 True 566.0 566 81.5030 1088 1777 1 chr3B.!!$R3 689
4 TraesCS3D01G136700 chr3A 113340470 113343444 2974 True 1946.5 3229 88.9135 1 2987 2 chr3A.!!$R1 2986
5 TraesCS3D01G136700 chr3A 542202774 542203463 689 False 582.0 582 81.9360 1088 1777 1 chr3A.!!$F1 689
6 TraesCS3D01G136700 chr1A 521629150 521629887 737 False 627.0 627 82.1000 1084 1822 1 chr1A.!!$F1 738
7 TraesCS3D01G136700 chr1D 426587031 426587677 646 False 597.0 597 83.4100 1131 1777 1 chr1D.!!$F1 646
8 TraesCS3D01G136700 chr1B 576205533 576206224 691 False 588.0 588 82.0660 1084 1777 1 chr1B.!!$F1 693
9 TraesCS3D01G136700 chr4B 132167010 132167658 648 True 291.0 291 75.1900 1068 1711 1 chr4B.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 856 0.111253 AAGCACCAGAGTCTTTGGGG 59.889 55.000 13.73 10.72 42.22 4.96 F
810 859 0.478507 CACCAGAGTCTTTGGGGGTT 59.521 55.000 13.73 0.00 40.11 4.11 F
879 928 1.488393 CTCCTCCCATTCACTTCTCCC 59.512 57.143 0.00 0.00 0.00 4.30 F
1779 1843 2.763902 CCCAAGTGGTTCTCCCCC 59.236 66.667 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1945 2.512515 ATGCGGAAGGAGAAGCGC 60.513 61.111 0.00 0.0 32.19 5.92 R
2037 2101 4.129737 CCGCACGACGTCATCCCT 62.130 66.667 17.16 0.0 41.42 4.20 R
2319 2383 4.755507 ACCGACCCGTCCTCCCTC 62.756 72.222 0.00 0.0 0.00 4.30 R
3243 3348 0.037326 TCCTCCCGAATATGCATCGC 60.037 55.000 0.19 0.0 38.93 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.119116 TGCAACGTGTGAGAAATATATGAACTT 59.881 33.333 0.00 0.00 0.00 2.66
98 102 8.920509 ATAATACTAACGCATTTTTGGTTTCC 57.079 30.769 0.00 0.00 0.00 3.13
102 106 5.694458 ACTAACGCATTTTTGGTTTCCATTC 59.306 36.000 0.00 0.00 31.53 2.67
155 159 0.599558 CAGGACAAACAGGTGGCATG 59.400 55.000 0.00 0.00 30.93 4.06
192 196 6.096695 GCCAAAGTTTCTTGACTAACACAAA 58.903 36.000 0.00 0.00 0.00 2.83
193 197 6.253512 GCCAAAGTTTCTTGACTAACACAAAG 59.746 38.462 0.00 0.00 0.00 2.77
196 200 9.405587 CAAAGTTTCTTGACTAACACAAAGAAA 57.594 29.630 5.56 5.56 0.00 2.52
197 201 8.965986 AAGTTTCTTGACTAACACAAAGAAAC 57.034 30.769 22.85 22.85 40.41 2.78
378 392 3.426787 TTTTCCGACTAAATGGGCAGA 57.573 42.857 0.00 0.00 0.00 4.26
400 414 3.672808 ACCATCACAGCAGAAAAGAGAG 58.327 45.455 0.00 0.00 0.00 3.20
403 417 3.482156 TCACAGCAGAAAAGAGAGCTT 57.518 42.857 0.00 0.00 34.61 3.74
442 459 5.510520 GCAGATCAAGATCCTTACTCGGAAT 60.511 44.000 6.45 0.00 38.58 3.01
444 461 5.835819 AGATCAAGATCCTTACTCGGAATCA 59.164 40.000 6.45 0.00 38.58 2.57
449 466 1.479323 TCCTTACTCGGAATCAACGGG 59.521 52.381 0.00 0.00 37.94 5.28
460 477 2.645838 ATCAACGGGCAAGATAGCAT 57.354 45.000 0.00 0.00 35.83 3.79
461 478 1.953559 TCAACGGGCAAGATAGCATC 58.046 50.000 0.00 0.00 35.83 3.91
462 479 1.209261 TCAACGGGCAAGATAGCATCA 59.791 47.619 0.00 0.00 35.83 3.07
463 480 2.158769 TCAACGGGCAAGATAGCATCAT 60.159 45.455 0.00 0.00 35.83 2.45
464 481 3.070878 TCAACGGGCAAGATAGCATCATA 59.929 43.478 0.00 0.00 35.83 2.15
465 482 3.769739 ACGGGCAAGATAGCATCATAA 57.230 42.857 0.00 0.00 35.83 1.90
466 483 4.085357 ACGGGCAAGATAGCATCATAAA 57.915 40.909 0.00 0.00 35.83 1.40
467 484 4.655963 ACGGGCAAGATAGCATCATAAAT 58.344 39.130 0.00 0.00 35.83 1.40
514 531 1.960689 TCGGCCGTCTCATCATCAATA 59.039 47.619 27.15 0.00 0.00 1.90
531 548 6.936900 TCATCAATACCCAAATTAGCTCTAGC 59.063 38.462 0.00 0.00 42.49 3.42
540 557 4.826274 AATTAGCTCTAGCCTGTCACAA 57.174 40.909 0.00 0.00 43.38 3.33
590 611 6.790285 AAGGCAAATTCTACAATGCAAAAG 57.210 33.333 0.00 0.00 40.51 2.27
610 632 7.436118 CAAAAGGGAAATCAATTGACTTGAGA 58.564 34.615 11.07 0.00 46.71 3.27
611 633 7.601705 AAAGGGAAATCAATTGACTTGAGAA 57.398 32.000 11.07 0.00 46.71 2.87
612 634 6.581171 AGGGAAATCAATTGACTTGAGAAC 57.419 37.500 11.07 0.00 46.71 3.01
613 635 6.070656 AGGGAAATCAATTGACTTGAGAACA 58.929 36.000 11.07 0.00 46.71 3.18
614 636 6.015940 AGGGAAATCAATTGACTTGAGAACAC 60.016 38.462 11.07 0.00 46.71 3.32
615 637 5.853282 GGAAATCAATTGACTTGAGAACACG 59.147 40.000 11.07 0.00 46.71 4.49
616 638 6.293407 GGAAATCAATTGACTTGAGAACACGA 60.293 38.462 11.07 0.00 46.71 4.35
617 639 6.618287 AATCAATTGACTTGAGAACACGAA 57.382 33.333 11.07 0.00 46.71 3.85
618 640 6.618287 ATCAATTGACTTGAGAACACGAAA 57.382 33.333 11.07 0.00 46.71 3.46
619 641 6.429791 TCAATTGACTTGAGAACACGAAAA 57.570 33.333 3.38 0.00 38.97 2.29
620 642 6.255215 TCAATTGACTTGAGAACACGAAAAC 58.745 36.000 3.38 0.00 38.97 2.43
621 643 6.093495 TCAATTGACTTGAGAACACGAAAACT 59.907 34.615 3.38 0.00 38.97 2.66
622 644 5.873179 TTGACTTGAGAACACGAAAACTT 57.127 34.783 0.00 0.00 0.00 2.66
623 645 5.464965 TGACTTGAGAACACGAAAACTTC 57.535 39.130 0.00 0.00 0.00 3.01
624 646 5.175859 TGACTTGAGAACACGAAAACTTCT 58.824 37.500 0.00 0.00 0.00 2.85
625 647 5.642063 TGACTTGAGAACACGAAAACTTCTT 59.358 36.000 0.00 0.00 0.00 2.52
626 648 6.148811 TGACTTGAGAACACGAAAACTTCTTT 59.851 34.615 0.00 0.00 0.00 2.52
627 649 6.909909 ACTTGAGAACACGAAAACTTCTTTT 58.090 32.000 0.00 0.00 31.91 2.27
628 650 7.368059 ACTTGAGAACACGAAAACTTCTTTTT 58.632 30.769 0.00 0.00 40.30 1.94
680 704 5.447279 GCGTTAATTCACCACAATGGAGTAG 60.447 44.000 0.84 0.00 40.96 2.57
682 706 6.538742 CGTTAATTCACCACAATGGAGTAGAT 59.461 38.462 0.84 0.00 40.96 1.98
787 819 6.863126 AGTTTTGTCTGTTTGAAACTCTTGTG 59.137 34.615 9.69 0.00 37.70 3.33
796 845 2.945008 TGAAACTCTTGTGAAGCACCAG 59.055 45.455 0.00 0.00 32.73 4.00
801 850 2.036992 CTCTTGTGAAGCACCAGAGTCT 59.963 50.000 16.27 0.00 44.22 3.24
803 852 3.118261 TCTTGTGAAGCACCAGAGTCTTT 60.118 43.478 0.00 0.00 32.44 2.52
804 853 2.564771 TGTGAAGCACCAGAGTCTTTG 58.435 47.619 0.00 0.00 32.73 2.77
805 854 1.876156 GTGAAGCACCAGAGTCTTTGG 59.124 52.381 7.88 7.88 41.60 3.28
806 855 1.202806 TGAAGCACCAGAGTCTTTGGG 60.203 52.381 13.73 4.34 40.11 4.12
807 856 0.111253 AAGCACCAGAGTCTTTGGGG 59.889 55.000 13.73 10.72 42.22 4.96
808 857 1.303643 GCACCAGAGTCTTTGGGGG 60.304 63.158 13.38 6.42 39.60 5.40
809 858 2.069165 GCACCAGAGTCTTTGGGGGT 62.069 60.000 13.38 0.00 39.60 4.95
810 859 0.478507 CACCAGAGTCTTTGGGGGTT 59.521 55.000 13.73 0.00 40.11 4.11
832 881 3.699038 TGGGGCATCTATTTAAACAGCAC 59.301 43.478 0.00 0.00 0.00 4.40
850 899 2.746472 GCACCCCATGTCTCCATTCTAC 60.746 54.545 0.00 0.00 0.00 2.59
872 921 2.038659 CTCTCCTCTCCTCCCATTCAC 58.961 57.143 0.00 0.00 0.00 3.18
879 928 1.488393 CTCCTCCCATTCACTTCTCCC 59.512 57.143 0.00 0.00 0.00 4.30
900 949 3.763897 CCCATTCTTTTGTCGAAGGGAAT 59.236 43.478 5.16 0.00 43.11 3.01
904 953 6.366061 CCATTCTTTTGTCGAAGGGAATTTTC 59.634 38.462 0.00 0.00 43.11 2.29
957 1009 4.333926 GTCCATTCTTTGCAGTTAGCTAGG 59.666 45.833 0.00 0.00 45.94 3.02
992 1044 3.584834 TCATTTGATTCTTGCTCGTCGA 58.415 40.909 0.00 0.00 0.00 4.20
1086 1144 3.775654 CGCGAGGGGAAGAAGGCT 61.776 66.667 0.00 0.00 0.00 4.58
1779 1843 2.763902 CCCAAGTGGTTCTCCCCC 59.236 66.667 0.00 0.00 0.00 5.40
2476 2540 1.280421 AGTACGAGGAGTTCTACCGGT 59.720 52.381 13.98 13.98 0.00 5.28
2867 2963 1.777878 AGGGGGTCATGTGTGTTAACA 59.222 47.619 3.59 3.59 0.00 2.41
2883 2979 6.018262 TGTGTTAACAGTTAAGTGTGAGATGC 60.018 38.462 16.56 6.89 0.00 3.91
2991 3096 5.008019 CACAGCCACATAATCTTCATGTACC 59.992 44.000 0.00 0.00 34.88 3.34
2997 3102 6.367149 CCACATAATCTTCATGTACCGATCAG 59.633 42.308 0.00 0.00 34.88 2.90
3007 3112 4.330944 TGTACCGATCAGTGTCAAACTT 57.669 40.909 0.00 0.00 36.83 2.66
3015 3120 5.405269 CGATCAGTGTCAAACTTATGTGTCA 59.595 40.000 0.00 0.00 36.83 3.58
3016 3121 6.091305 CGATCAGTGTCAAACTTATGTGTCAT 59.909 38.462 0.00 0.00 36.83 3.06
3047 3152 4.794248 TGAATACATGATGCGCAAGTAC 57.206 40.909 17.11 7.26 33.94 2.73
3048 3153 4.187694 TGAATACATGATGCGCAAGTACA 58.812 39.130 17.11 13.20 33.94 2.90
3049 3154 4.033932 TGAATACATGATGCGCAAGTACAC 59.966 41.667 17.11 12.47 33.94 2.90
3050 3155 1.086696 ACATGATGCGCAAGTACACC 58.913 50.000 17.11 0.00 41.68 4.16
3051 3156 1.085893 CATGATGCGCAAGTACACCA 58.914 50.000 17.11 4.40 41.68 4.17
3052 3157 1.468127 CATGATGCGCAAGTACACCAA 59.532 47.619 17.11 0.00 41.68 3.67
3053 3158 1.819928 TGATGCGCAAGTACACCAAT 58.180 45.000 17.11 0.00 41.68 3.16
3054 3159 2.158559 TGATGCGCAAGTACACCAATT 58.841 42.857 17.11 0.00 41.68 2.32
3055 3160 2.095314 TGATGCGCAAGTACACCAATTG 60.095 45.455 17.11 0.00 41.68 2.32
3056 3161 1.313772 TGCGCAAGTACACCAATTGT 58.686 45.000 8.16 0.00 39.32 2.71
3057 3162 1.678627 TGCGCAAGTACACCAATTGTT 59.321 42.857 8.16 0.00 37.48 2.83
3058 3163 2.050691 GCGCAAGTACACCAATTGTTG 58.949 47.619 0.30 2.60 37.48 3.33
3059 3164 2.542824 GCGCAAGTACACCAATTGTTGT 60.543 45.455 13.50 13.50 37.48 3.32
3060 3165 3.701241 CGCAAGTACACCAATTGTTGTT 58.299 40.909 14.22 0.00 39.91 2.83
3061 3166 4.790123 GCGCAAGTACACCAATTGTTGTTA 60.790 41.667 14.22 0.00 37.48 2.41
3062 3167 5.457140 CGCAAGTACACCAATTGTTGTTAT 58.543 37.500 14.22 0.67 39.91 1.89
3063 3168 6.604012 CGCAAGTACACCAATTGTTGTTATA 58.396 36.000 14.22 0.00 39.91 0.98
3064 3169 6.521821 CGCAAGTACACCAATTGTTGTTATAC 59.478 38.462 14.22 6.67 39.91 1.47
3065 3170 6.804783 GCAAGTACACCAATTGTTGTTATACC 59.195 38.462 14.22 0.00 39.91 2.73
3066 3171 7.308951 GCAAGTACACCAATTGTTGTTATACCT 60.309 37.037 14.22 0.97 39.91 3.08
3067 3172 9.221933 CAAGTACACCAATTGTTGTTATACCTA 57.778 33.333 14.22 0.00 39.91 3.08
3068 3173 9.969001 AAGTACACCAATTGTTGTTATACCTAT 57.031 29.630 14.22 0.00 39.91 2.57
3079 3184 8.405418 TGTTGTTATACCTATACTAGAGCTGG 57.595 38.462 0.00 0.00 0.00 4.85
3080 3185 7.039923 TGTTGTTATACCTATACTAGAGCTGGC 60.040 40.741 0.00 0.00 0.00 4.85
3081 3186 5.646793 TGTTATACCTATACTAGAGCTGGCG 59.353 44.000 0.00 0.00 0.00 5.69
3082 3187 1.912417 ACCTATACTAGAGCTGGCGG 58.088 55.000 0.00 0.00 0.00 6.13
3083 3188 1.424302 ACCTATACTAGAGCTGGCGGA 59.576 52.381 0.00 0.00 0.00 5.54
3084 3189 2.041891 ACCTATACTAGAGCTGGCGGAT 59.958 50.000 0.00 0.00 0.00 4.18
3085 3190 2.685897 CCTATACTAGAGCTGGCGGATC 59.314 54.545 2.68 2.68 0.00 3.36
3086 3191 2.294449 ATACTAGAGCTGGCGGATCA 57.706 50.000 14.86 0.00 31.91 2.92
3087 3192 2.067365 TACTAGAGCTGGCGGATCAA 57.933 50.000 14.86 0.00 31.91 2.57
3088 3193 1.418334 ACTAGAGCTGGCGGATCAAT 58.582 50.000 14.86 0.00 31.91 2.57
3089 3194 1.069823 ACTAGAGCTGGCGGATCAATG 59.930 52.381 14.86 5.72 31.91 2.82
3090 3195 0.394192 TAGAGCTGGCGGATCAATGG 59.606 55.000 14.86 0.00 31.91 3.16
3091 3196 2.517875 AGCTGGCGGATCAATGGC 60.518 61.111 0.00 0.00 0.00 4.40
3092 3197 2.517875 GCTGGCGGATCAATGGCT 60.518 61.111 0.00 0.00 0.00 4.75
3093 3198 2.550101 GCTGGCGGATCAATGGCTC 61.550 63.158 0.00 0.00 0.00 4.70
3094 3199 1.153107 CTGGCGGATCAATGGCTCA 60.153 57.895 0.00 0.00 0.00 4.26
3095 3200 0.749091 CTGGCGGATCAATGGCTCAA 60.749 55.000 0.00 0.00 0.00 3.02
3096 3201 0.106569 TGGCGGATCAATGGCTCAAT 60.107 50.000 0.00 0.00 0.00 2.57
3097 3202 0.313043 GGCGGATCAATGGCTCAATG 59.687 55.000 0.00 0.00 0.00 2.82
3098 3203 0.313043 GCGGATCAATGGCTCAATGG 59.687 55.000 0.00 0.00 0.00 3.16
3099 3204 0.313043 CGGATCAATGGCTCAATGGC 59.687 55.000 0.00 0.00 42.18 4.40
3109 3214 1.668419 GCTCAATGGCCACGTAATCT 58.332 50.000 8.16 0.00 0.00 2.40
3110 3215 1.331756 GCTCAATGGCCACGTAATCTG 59.668 52.381 8.16 0.00 0.00 2.90
3111 3216 2.905075 CTCAATGGCCACGTAATCTGA 58.095 47.619 8.16 1.49 0.00 3.27
3112 3217 3.270027 CTCAATGGCCACGTAATCTGAA 58.730 45.455 8.16 0.00 0.00 3.02
3113 3218 3.270027 TCAATGGCCACGTAATCTGAAG 58.730 45.455 8.16 0.00 0.00 3.02
3114 3219 3.009723 CAATGGCCACGTAATCTGAAGT 58.990 45.455 8.16 0.00 0.00 3.01
3115 3220 2.851263 TGGCCACGTAATCTGAAGTT 57.149 45.000 0.00 0.00 0.00 2.66
3116 3221 2.695359 TGGCCACGTAATCTGAAGTTC 58.305 47.619 0.00 0.00 0.00 3.01
3117 3222 2.007608 GGCCACGTAATCTGAAGTTCC 58.992 52.381 0.00 0.00 0.00 3.62
3118 3223 1.659098 GCCACGTAATCTGAAGTTCCG 59.341 52.381 0.00 0.00 0.00 4.30
3119 3224 2.673043 GCCACGTAATCTGAAGTTCCGA 60.673 50.000 0.00 0.00 0.00 4.55
3120 3225 3.581755 CCACGTAATCTGAAGTTCCGAA 58.418 45.455 0.81 0.00 0.00 4.30
3121 3226 3.612860 CCACGTAATCTGAAGTTCCGAAG 59.387 47.826 0.81 0.00 0.00 3.79
3122 3227 3.060895 CACGTAATCTGAAGTTCCGAAGC 59.939 47.826 0.81 0.00 0.00 3.86
3123 3228 3.250744 CGTAATCTGAAGTTCCGAAGCA 58.749 45.455 0.81 0.00 0.00 3.91
3124 3229 3.678072 CGTAATCTGAAGTTCCGAAGCAA 59.322 43.478 0.81 0.00 0.00 3.91
3125 3230 4.330074 CGTAATCTGAAGTTCCGAAGCAAT 59.670 41.667 0.81 0.00 0.00 3.56
3126 3231 4.954092 AATCTGAAGTTCCGAAGCAATC 57.046 40.909 0.81 0.00 0.00 2.67
3127 3232 3.685139 TCTGAAGTTCCGAAGCAATCT 57.315 42.857 0.00 0.00 0.00 2.40
3128 3233 4.801330 TCTGAAGTTCCGAAGCAATCTA 57.199 40.909 0.00 0.00 0.00 1.98
3129 3234 4.748892 TCTGAAGTTCCGAAGCAATCTAG 58.251 43.478 0.00 0.00 0.00 2.43
3130 3235 3.262420 TGAAGTTCCGAAGCAATCTAGC 58.738 45.455 0.00 0.00 0.00 3.42
3131 3236 3.262420 GAAGTTCCGAAGCAATCTAGCA 58.738 45.455 0.00 0.00 36.85 3.49
3132 3237 3.550437 AGTTCCGAAGCAATCTAGCAT 57.450 42.857 0.00 0.00 36.85 3.79
3133 3238 4.672587 AGTTCCGAAGCAATCTAGCATA 57.327 40.909 0.00 0.00 36.85 3.14
3134 3239 5.023533 AGTTCCGAAGCAATCTAGCATAA 57.976 39.130 0.00 0.00 36.85 1.90
3135 3240 5.428253 AGTTCCGAAGCAATCTAGCATAAA 58.572 37.500 0.00 0.00 36.85 1.40
3136 3241 5.294552 AGTTCCGAAGCAATCTAGCATAAAC 59.705 40.000 0.00 0.00 36.85 2.01
3137 3242 3.802139 TCCGAAGCAATCTAGCATAAACG 59.198 43.478 0.00 0.00 36.85 3.60
3138 3243 3.802139 CCGAAGCAATCTAGCATAAACGA 59.198 43.478 0.00 0.00 36.85 3.85
3139 3244 4.270084 CCGAAGCAATCTAGCATAAACGAA 59.730 41.667 0.00 0.00 36.85 3.85
3140 3245 5.191059 CGAAGCAATCTAGCATAAACGAAC 58.809 41.667 0.00 0.00 36.85 3.95
3141 3246 5.485662 AAGCAATCTAGCATAAACGAACC 57.514 39.130 0.00 0.00 36.85 3.62
3142 3247 4.513442 AGCAATCTAGCATAAACGAACCA 58.487 39.130 0.00 0.00 36.85 3.67
3143 3248 4.941263 AGCAATCTAGCATAAACGAACCAA 59.059 37.500 0.00 0.00 36.85 3.67
3144 3249 5.028375 GCAATCTAGCATAAACGAACCAAC 58.972 41.667 0.00 0.00 0.00 3.77
3145 3250 5.569413 CAATCTAGCATAAACGAACCAACC 58.431 41.667 0.00 0.00 0.00 3.77
3146 3251 4.546829 TCTAGCATAAACGAACCAACCT 57.453 40.909 0.00 0.00 0.00 3.50
3147 3252 4.250464 TCTAGCATAAACGAACCAACCTG 58.750 43.478 0.00 0.00 0.00 4.00
3148 3253 2.858745 AGCATAAACGAACCAACCTGT 58.141 42.857 0.00 0.00 0.00 4.00
3149 3254 2.552315 AGCATAAACGAACCAACCTGTG 59.448 45.455 0.00 0.00 0.00 3.66
3150 3255 2.550606 GCATAAACGAACCAACCTGTGA 59.449 45.455 0.00 0.00 0.00 3.58
3151 3256 3.190535 GCATAAACGAACCAACCTGTGAT 59.809 43.478 0.00 0.00 0.00 3.06
3152 3257 4.320935 GCATAAACGAACCAACCTGTGATT 60.321 41.667 0.00 0.00 0.00 2.57
3153 3258 3.708563 AAACGAACCAACCTGTGATTG 57.291 42.857 0.00 0.00 0.00 2.67
3162 3267 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
3163 3268 4.588899 CAACCTGTGATTGGATGGTTAGA 58.411 43.478 0.00 0.00 38.76 2.10
3164 3269 4.494091 ACCTGTGATTGGATGGTTAGAG 57.506 45.455 0.00 0.00 0.00 2.43
3165 3270 3.200825 ACCTGTGATTGGATGGTTAGAGG 59.799 47.826 0.00 0.00 0.00 3.69
3166 3271 3.434167 CCTGTGATTGGATGGTTAGAGGG 60.434 52.174 0.00 0.00 0.00 4.30
3167 3272 3.455910 CTGTGATTGGATGGTTAGAGGGA 59.544 47.826 0.00 0.00 0.00 4.20
3168 3273 4.047166 TGTGATTGGATGGTTAGAGGGAT 58.953 43.478 0.00 0.00 0.00 3.85
3169 3274 5.223655 TGTGATTGGATGGTTAGAGGGATA 58.776 41.667 0.00 0.00 0.00 2.59
3170 3275 5.307976 TGTGATTGGATGGTTAGAGGGATAG 59.692 44.000 0.00 0.00 0.00 2.08
3171 3276 5.308237 GTGATTGGATGGTTAGAGGGATAGT 59.692 44.000 0.00 0.00 0.00 2.12
3172 3277 5.307976 TGATTGGATGGTTAGAGGGATAGTG 59.692 44.000 0.00 0.00 0.00 2.74
3173 3278 3.587498 TGGATGGTTAGAGGGATAGTGG 58.413 50.000 0.00 0.00 0.00 4.00
3174 3279 3.051341 TGGATGGTTAGAGGGATAGTGGT 60.051 47.826 0.00 0.00 0.00 4.16
3175 3280 4.171243 TGGATGGTTAGAGGGATAGTGGTA 59.829 45.833 0.00 0.00 0.00 3.25
3176 3281 5.162760 TGGATGGTTAGAGGGATAGTGGTAT 60.163 44.000 0.00 0.00 0.00 2.73
3177 3282 5.422650 GGATGGTTAGAGGGATAGTGGTATC 59.577 48.000 0.00 0.00 35.19 2.24
3188 3293 5.153950 GATAGTGGTATCCTCAACCCATC 57.846 47.826 0.00 0.00 36.06 3.51
3189 3294 2.845659 AGTGGTATCCTCAACCCATCA 58.154 47.619 0.00 0.00 36.06 3.07
3190 3295 2.774234 AGTGGTATCCTCAACCCATCAG 59.226 50.000 0.00 0.00 36.06 2.90
3191 3296 2.126882 TGGTATCCTCAACCCATCAGG 58.873 52.381 0.00 0.00 43.78 3.86
3206 3311 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
3207 3312 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
3208 3313 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
3209 3314 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
3210 3315 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
3211 3316 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
3212 3317 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
3213 3318 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
3214 3319 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
3215 3320 0.613260 AAGTCCTGGTGCTCGCATTA 59.387 50.000 0.00 0.00 0.00 1.90
3216 3321 0.833287 AGTCCTGGTGCTCGCATTAT 59.167 50.000 0.00 0.00 0.00 1.28
3217 3322 1.210478 AGTCCTGGTGCTCGCATTATT 59.790 47.619 0.00 0.00 0.00 1.40
3218 3323 1.599542 GTCCTGGTGCTCGCATTATTC 59.400 52.381 0.00 0.00 0.00 1.75
3219 3324 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
3220 3325 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
3221 3326 2.224281 CCTGGTGCTCGCATTATTCCTA 60.224 50.000 0.00 0.00 0.00 2.94
3222 3327 3.062763 CTGGTGCTCGCATTATTCCTAG 58.937 50.000 0.00 0.00 0.00 3.02
3223 3328 2.698274 TGGTGCTCGCATTATTCCTAGA 59.302 45.455 0.00 0.00 0.00 2.43
3224 3329 3.324846 TGGTGCTCGCATTATTCCTAGAT 59.675 43.478 0.00 0.00 0.00 1.98
3225 3330 4.202357 TGGTGCTCGCATTATTCCTAGATT 60.202 41.667 0.00 0.00 0.00 2.40
3226 3331 4.757149 GGTGCTCGCATTATTCCTAGATTT 59.243 41.667 0.00 0.00 0.00 2.17
3227 3332 5.932303 GGTGCTCGCATTATTCCTAGATTTA 59.068 40.000 0.00 0.00 0.00 1.40
3228 3333 6.595716 GGTGCTCGCATTATTCCTAGATTTAT 59.404 38.462 0.00 0.00 0.00 1.40
3229 3334 7.119846 GGTGCTCGCATTATTCCTAGATTTATT 59.880 37.037 0.00 0.00 0.00 1.40
3230 3335 8.507249 GTGCTCGCATTATTCCTAGATTTATTT 58.493 33.333 0.00 0.00 0.00 1.40
3231 3336 8.721478 TGCTCGCATTATTCCTAGATTTATTTC 58.279 33.333 0.00 0.00 0.00 2.17
3232 3337 8.721478 GCTCGCATTATTCCTAGATTTATTTCA 58.279 33.333 0.00 0.00 0.00 2.69
3234 3339 9.219603 TCGCATTATTCCTAGATTTATTTCAGG 57.780 33.333 0.00 0.00 0.00 3.86
3235 3340 9.219603 CGCATTATTCCTAGATTTATTTCAGGA 57.780 33.333 0.00 0.00 33.59 3.86
3244 3349 9.305925 CCTAGATTTATTTCAGGATTTTTGTGC 57.694 33.333 0.00 0.00 0.00 4.57
3245 3350 7.816945 AGATTTATTTCAGGATTTTTGTGCG 57.183 32.000 0.00 0.00 0.00 5.34
3246 3351 7.601856 AGATTTATTTCAGGATTTTTGTGCGA 58.398 30.769 0.00 0.00 0.00 5.10
3247 3352 8.253113 AGATTTATTTCAGGATTTTTGTGCGAT 58.747 29.630 0.00 0.00 0.00 4.58
3248 3353 7.579589 TTTATTTCAGGATTTTTGTGCGATG 57.420 32.000 0.00 0.00 0.00 3.84
3249 3354 2.634982 TCAGGATTTTTGTGCGATGC 57.365 45.000 0.00 0.00 0.00 3.91
3250 3355 1.885233 TCAGGATTTTTGTGCGATGCA 59.115 42.857 0.00 0.00 35.60 3.96
3251 3356 2.492881 TCAGGATTTTTGTGCGATGCAT 59.507 40.909 0.00 0.00 41.91 3.96
3252 3357 3.693578 TCAGGATTTTTGTGCGATGCATA 59.306 39.130 0.00 0.00 41.91 3.14
3253 3358 4.338964 TCAGGATTTTTGTGCGATGCATAT 59.661 37.500 0.00 0.00 41.91 1.78
3254 3359 5.045215 CAGGATTTTTGTGCGATGCATATT 58.955 37.500 0.00 0.00 41.91 1.28
3255 3360 5.174398 CAGGATTTTTGTGCGATGCATATTC 59.826 40.000 0.00 0.00 41.91 1.75
3256 3361 4.146961 GGATTTTTGTGCGATGCATATTCG 59.853 41.667 0.00 0.40 41.91 3.34
3257 3362 2.753989 TTTGTGCGATGCATATTCGG 57.246 45.000 9.99 0.00 41.91 4.30
3258 3363 0.943673 TTGTGCGATGCATATTCGGG 59.056 50.000 9.99 0.00 41.91 5.14
3259 3364 0.105778 TGTGCGATGCATATTCGGGA 59.894 50.000 9.99 0.00 41.91 5.14
3260 3365 0.792640 GTGCGATGCATATTCGGGAG 59.207 55.000 9.99 0.00 41.91 4.30
3261 3366 0.320683 TGCGATGCATATTCGGGAGG 60.321 55.000 9.99 0.00 37.10 4.30
3262 3367 0.037326 GCGATGCATATTCGGGAGGA 60.037 55.000 9.99 0.00 37.10 3.71
3263 3368 2.001812 CGATGCATATTCGGGAGGAG 57.998 55.000 0.00 0.00 33.05 3.69
3264 3369 1.546029 CGATGCATATTCGGGAGGAGA 59.454 52.381 0.00 0.00 33.05 3.71
3265 3370 2.672478 CGATGCATATTCGGGAGGAGAC 60.672 54.545 0.00 0.00 33.05 3.36
3266 3371 0.673985 TGCATATTCGGGAGGAGACG 59.326 55.000 0.00 0.00 0.00 4.18
3267 3372 0.674534 GCATATTCGGGAGGAGACGT 59.325 55.000 0.00 0.00 0.00 4.34
3268 3373 1.068741 GCATATTCGGGAGGAGACGTT 59.931 52.381 0.00 0.00 0.00 3.99
3269 3374 2.862921 GCATATTCGGGAGGAGACGTTC 60.863 54.545 0.00 0.00 0.00 3.95
3290 3395 4.994744 TCGACGACGAGGTGTCTA 57.005 55.556 5.75 0.00 45.87 2.59
3291 3396 2.449548 TCGACGACGAGGTGTCTAC 58.550 57.895 5.75 0.00 45.87 2.59
3292 3397 1.058438 CGACGACGAGGTGTCTACG 59.942 63.158 0.00 0.00 45.87 3.51
3293 3398 1.423056 GACGACGAGGTGTCTACGG 59.577 63.158 0.00 0.00 45.87 4.02
3294 3399 1.294659 GACGACGAGGTGTCTACGGT 61.295 60.000 0.00 0.00 45.87 4.83
3295 3400 1.134075 CGACGAGGTGTCTACGGTG 59.866 63.158 0.00 0.00 45.87 4.94
3296 3401 1.293963 CGACGAGGTGTCTACGGTGA 61.294 60.000 0.00 0.00 45.87 4.02
3297 3402 0.167689 GACGAGGTGTCTACGGTGAC 59.832 60.000 0.00 3.56 44.58 3.67
3298 3403 0.250640 ACGAGGTGTCTACGGTGACT 60.251 55.000 10.55 0.00 37.79 3.41
3299 3404 0.879765 CGAGGTGTCTACGGTGACTT 59.120 55.000 10.55 0.00 37.79 3.01
3300 3405 1.268899 CGAGGTGTCTACGGTGACTTT 59.731 52.381 10.55 0.00 37.79 2.66
3301 3406 2.673833 GAGGTGTCTACGGTGACTTTG 58.326 52.381 10.55 0.00 37.79 2.77
3302 3407 2.035576 GAGGTGTCTACGGTGACTTTGT 59.964 50.000 10.55 0.00 37.79 2.83
3303 3408 3.225104 AGGTGTCTACGGTGACTTTGTA 58.775 45.455 10.55 0.00 37.79 2.41
3304 3409 3.638160 AGGTGTCTACGGTGACTTTGTAA 59.362 43.478 10.55 0.00 37.79 2.41
3305 3410 4.099881 AGGTGTCTACGGTGACTTTGTAAA 59.900 41.667 10.55 0.00 37.79 2.01
3306 3411 4.992951 GGTGTCTACGGTGACTTTGTAAAT 59.007 41.667 10.55 0.00 37.79 1.40
3307 3412 5.467735 GGTGTCTACGGTGACTTTGTAAATT 59.532 40.000 10.55 0.00 37.79 1.82
3308 3413 6.017687 GGTGTCTACGGTGACTTTGTAAATTT 60.018 38.462 10.55 0.00 37.79 1.82
3309 3414 7.067728 GTGTCTACGGTGACTTTGTAAATTTC 58.932 38.462 10.55 0.00 37.79 2.17
3310 3415 6.762187 TGTCTACGGTGACTTTGTAAATTTCA 59.238 34.615 10.55 0.00 37.79 2.69
3311 3416 7.280428 TGTCTACGGTGACTTTGTAAATTTCAA 59.720 33.333 10.55 0.00 37.79 2.69
3312 3417 7.797123 GTCTACGGTGACTTTGTAAATTTCAAG 59.203 37.037 0.00 0.00 34.39 3.02
3313 3418 6.687081 ACGGTGACTTTGTAAATTTCAAGA 57.313 33.333 10.26 0.00 0.00 3.02
3314 3419 7.272037 ACGGTGACTTTGTAAATTTCAAGAT 57.728 32.000 10.26 2.01 0.00 2.40
3315 3420 7.138736 ACGGTGACTTTGTAAATTTCAAGATG 58.861 34.615 10.26 5.69 0.00 2.90
3316 3421 7.012894 ACGGTGACTTTGTAAATTTCAAGATGA 59.987 33.333 10.26 0.00 0.00 2.92
3317 3422 8.023128 CGGTGACTTTGTAAATTTCAAGATGAT 58.977 33.333 10.26 0.00 0.00 2.45
3324 3429 9.806203 TTTGTAAATTTCAAGATGATATGCTGG 57.194 29.630 0.00 0.00 0.00 4.85
3325 3430 7.428020 TGTAAATTTCAAGATGATATGCTGGC 58.572 34.615 0.00 0.00 0.00 4.85
3326 3431 6.726490 AAATTTCAAGATGATATGCTGGCT 57.274 33.333 0.00 0.00 0.00 4.75
3327 3432 5.961396 ATTTCAAGATGATATGCTGGCTC 57.039 39.130 0.00 0.00 0.00 4.70
3328 3433 4.426736 TTCAAGATGATATGCTGGCTCA 57.573 40.909 0.00 0.00 0.00 4.26
3329 3434 4.004196 TCAAGATGATATGCTGGCTCAG 57.996 45.455 0.00 0.00 34.12 3.35
3330 3435 3.390311 TCAAGATGATATGCTGGCTCAGT 59.610 43.478 4.45 0.00 33.43 3.41
3331 3436 3.681593 AGATGATATGCTGGCTCAGTC 57.318 47.619 4.45 0.00 33.43 3.51
3332 3437 3.241156 AGATGATATGCTGGCTCAGTCT 58.759 45.455 4.45 0.00 33.43 3.24
3333 3438 3.647113 AGATGATATGCTGGCTCAGTCTT 59.353 43.478 4.45 0.00 33.43 3.01
3334 3439 3.920231 TGATATGCTGGCTCAGTCTTT 57.080 42.857 4.45 0.00 33.43 2.52
3335 3440 3.801698 TGATATGCTGGCTCAGTCTTTC 58.198 45.455 4.45 0.00 33.43 2.62
3336 3441 2.299993 TATGCTGGCTCAGTCTTTCG 57.700 50.000 4.45 0.00 33.43 3.46
3337 3442 0.610174 ATGCTGGCTCAGTCTTTCGA 59.390 50.000 4.45 0.00 33.43 3.71
3338 3443 0.392706 TGCTGGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 33.43 3.71
3339 3444 1.074752 GCTGGCTCAGTCTTTCGAAG 58.925 55.000 0.00 0.00 33.43 3.79
3340 3445 1.719600 CTGGCTCAGTCTTTCGAAGG 58.280 55.000 0.00 0.00 0.00 3.46
3341 3446 1.001406 CTGGCTCAGTCTTTCGAAGGT 59.999 52.381 7.20 0.00 0.00 3.50
3342 3447 1.270305 TGGCTCAGTCTTTCGAAGGTG 60.270 52.381 7.20 0.00 0.00 4.00
3343 3448 0.793250 GCTCAGTCTTTCGAAGGTGC 59.207 55.000 7.20 2.27 0.00 5.01
3344 3449 1.606737 GCTCAGTCTTTCGAAGGTGCT 60.607 52.381 7.20 4.49 0.00 4.40
3345 3450 2.333014 CTCAGTCTTTCGAAGGTGCTC 58.667 52.381 7.20 0.00 0.00 4.26
3346 3451 1.686587 TCAGTCTTTCGAAGGTGCTCA 59.313 47.619 7.20 0.00 0.00 4.26
3347 3452 2.300152 TCAGTCTTTCGAAGGTGCTCAT 59.700 45.455 7.20 0.00 0.00 2.90
3348 3453 3.509967 TCAGTCTTTCGAAGGTGCTCATA 59.490 43.478 7.20 0.00 0.00 2.15
3349 3454 3.862267 CAGTCTTTCGAAGGTGCTCATAG 59.138 47.826 7.20 0.00 0.00 2.23
3350 3455 3.118956 AGTCTTTCGAAGGTGCTCATAGG 60.119 47.826 7.20 0.00 0.00 2.57
3351 3456 2.168521 TCTTTCGAAGGTGCTCATAGGG 59.831 50.000 7.20 0.00 0.00 3.53
3352 3457 1.860641 TTCGAAGGTGCTCATAGGGA 58.139 50.000 0.00 0.00 0.00 4.20
3353 3458 2.088104 TCGAAGGTGCTCATAGGGAT 57.912 50.000 0.00 0.00 0.00 3.85
3354 3459 3.238788 TCGAAGGTGCTCATAGGGATA 57.761 47.619 0.00 0.00 0.00 2.59
3355 3460 3.157881 TCGAAGGTGCTCATAGGGATAG 58.842 50.000 0.00 0.00 0.00 2.08
3356 3461 2.232452 CGAAGGTGCTCATAGGGATAGG 59.768 54.545 0.00 0.00 0.00 2.57
3357 3462 2.334006 AGGTGCTCATAGGGATAGGG 57.666 55.000 0.00 0.00 0.00 3.53
3358 3463 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
3359 3464 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
3360 3465 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
3361 3466 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
3362 3467 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
3363 3468 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
3364 3469 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
3365 3470 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
3366 3471 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
3367 3472 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
3368 3473 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
3369 3474 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
3370 3475 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
3373 3478 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
3374 3479 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
3375 3480 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
3376 3481 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
3377 3482 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
3378 3483 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
3379 3484 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
3380 3485 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
3381 3486 0.992072 CGTGTGTGCGTTCATAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
3382 3487 0.721718 GTGTGTGCGTTCATAGAGGC 59.278 55.000 0.00 0.00 0.00 4.70
3383 3488 0.735978 TGTGTGCGTTCATAGAGGCG 60.736 55.000 0.00 0.00 33.34 5.52
3384 3489 0.457853 GTGTGCGTTCATAGAGGCGA 60.458 55.000 0.00 0.00 33.34 5.54
3385 3490 0.179137 TGTGCGTTCATAGAGGCGAG 60.179 55.000 0.00 0.00 33.34 5.03
3386 3491 0.179134 GTGCGTTCATAGAGGCGAGT 60.179 55.000 0.00 0.00 33.34 4.18
3387 3492 0.179137 TGCGTTCATAGAGGCGAGTG 60.179 55.000 0.00 0.00 33.34 3.51
3388 3493 1.483424 GCGTTCATAGAGGCGAGTGC 61.483 60.000 0.00 0.00 41.71 4.40
3389 3494 0.179137 CGTTCATAGAGGCGAGTGCA 60.179 55.000 0.00 0.00 45.35 4.57
3390 3495 1.536922 CGTTCATAGAGGCGAGTGCAT 60.537 52.381 0.00 0.00 45.35 3.96
3391 3496 1.863454 GTTCATAGAGGCGAGTGCATG 59.137 52.381 0.00 0.00 45.35 4.06
3392 3497 0.249615 TCATAGAGGCGAGTGCATGC 60.250 55.000 11.82 11.82 45.35 4.06
3393 3498 1.300465 ATAGAGGCGAGTGCATGCG 60.300 57.895 14.09 6.78 45.35 4.73
3399 3504 3.178592 CGAGTGCATGCGCGTGTA 61.179 61.111 29.00 23.41 42.97 2.90
3400 3505 2.516589 CGAGTGCATGCGCGTGTAT 61.517 57.895 29.00 16.06 42.97 2.29
3401 3506 1.206115 CGAGTGCATGCGCGTGTATA 61.206 55.000 29.00 14.29 42.97 1.47
3402 3507 0.229753 GAGTGCATGCGCGTGTATAC 59.770 55.000 29.00 23.40 42.97 1.47
3414 3519 2.190325 GTGTATACGAGCGCTTCTGT 57.810 50.000 13.26 13.77 0.00 3.41
3415 3520 2.527100 GTGTATACGAGCGCTTCTGTT 58.473 47.619 13.26 5.07 0.00 3.16
3416 3521 2.921754 GTGTATACGAGCGCTTCTGTTT 59.078 45.455 13.26 8.86 0.00 2.83
3417 3522 2.921121 TGTATACGAGCGCTTCTGTTTG 59.079 45.455 13.26 0.00 0.00 2.93
3418 3523 2.080286 ATACGAGCGCTTCTGTTTGT 57.920 45.000 13.26 0.00 0.00 2.83
3419 3524 2.710220 TACGAGCGCTTCTGTTTGTA 57.290 45.000 13.26 0.00 0.00 2.41
3420 3525 1.137513 ACGAGCGCTTCTGTTTGTAC 58.862 50.000 13.26 0.00 0.00 2.90
3421 3526 1.269621 ACGAGCGCTTCTGTTTGTACT 60.270 47.619 13.26 0.00 0.00 2.73
3422 3527 1.125021 CGAGCGCTTCTGTTTGTACTG 59.875 52.381 13.26 0.00 0.00 2.74
3423 3528 2.404215 GAGCGCTTCTGTTTGTACTGA 58.596 47.619 13.26 0.00 0.00 3.41
3424 3529 2.996621 GAGCGCTTCTGTTTGTACTGAT 59.003 45.455 13.26 0.00 33.04 2.90
3425 3530 2.738846 AGCGCTTCTGTTTGTACTGATG 59.261 45.455 2.64 0.00 33.04 3.07
3426 3531 2.480419 GCGCTTCTGTTTGTACTGATGT 59.520 45.455 0.00 0.00 33.04 3.06
3427 3532 3.058914 GCGCTTCTGTTTGTACTGATGTT 60.059 43.478 0.00 0.00 33.04 2.71
3428 3533 4.151689 GCGCTTCTGTTTGTACTGATGTTA 59.848 41.667 0.00 0.00 33.04 2.41
3429 3534 5.333798 GCGCTTCTGTTTGTACTGATGTTAA 60.334 40.000 0.00 0.00 33.04 2.01
3430 3535 6.655062 CGCTTCTGTTTGTACTGATGTTAAA 58.345 36.000 0.00 0.00 33.04 1.52
3431 3536 7.129622 CGCTTCTGTTTGTACTGATGTTAAAA 58.870 34.615 0.00 0.00 33.04 1.52
3432 3537 7.642194 CGCTTCTGTTTGTACTGATGTTAAAAA 59.358 33.333 0.00 0.00 33.04 1.94
3450 3555 1.884235 AAAAAGCAGTCTAGCGCAGT 58.116 45.000 11.47 0.00 40.15 4.40
3451 3556 2.743636 AAAAGCAGTCTAGCGCAGTA 57.256 45.000 11.47 0.00 40.15 2.74
3452 3557 1.997669 AAAGCAGTCTAGCGCAGTAC 58.002 50.000 11.47 3.75 40.15 2.73
3453 3558 1.178276 AAGCAGTCTAGCGCAGTACT 58.822 50.000 11.47 6.43 40.15 2.73
3454 3559 1.178276 AGCAGTCTAGCGCAGTACTT 58.822 50.000 11.47 0.00 40.15 2.24
3455 3560 1.546476 AGCAGTCTAGCGCAGTACTTT 59.454 47.619 11.47 0.00 40.15 2.66
3456 3561 1.921230 GCAGTCTAGCGCAGTACTTTC 59.079 52.381 11.47 0.11 0.00 2.62
3457 3562 2.531206 CAGTCTAGCGCAGTACTTTCC 58.469 52.381 11.47 0.00 0.00 3.13
3458 3563 2.094700 CAGTCTAGCGCAGTACTTTCCA 60.095 50.000 11.47 0.00 0.00 3.53
3459 3564 2.561419 AGTCTAGCGCAGTACTTTCCAA 59.439 45.455 11.47 0.00 0.00 3.53
3460 3565 3.006537 AGTCTAGCGCAGTACTTTCCAAA 59.993 43.478 11.47 0.00 0.00 3.28
3461 3566 3.744426 GTCTAGCGCAGTACTTTCCAAAA 59.256 43.478 11.47 0.00 0.00 2.44
3462 3567 4.212636 GTCTAGCGCAGTACTTTCCAAAAA 59.787 41.667 11.47 0.00 0.00 1.94
3463 3568 3.349488 AGCGCAGTACTTTCCAAAAAC 57.651 42.857 11.47 0.00 0.00 2.43
3464 3569 2.685897 AGCGCAGTACTTTCCAAAAACA 59.314 40.909 11.47 0.00 0.00 2.83
3465 3570 3.317993 AGCGCAGTACTTTCCAAAAACAT 59.682 39.130 11.47 0.00 0.00 2.71
3466 3571 4.048504 GCGCAGTACTTTCCAAAAACATT 58.951 39.130 0.30 0.00 0.00 2.71
3467 3572 4.085107 GCGCAGTACTTTCCAAAAACATTG 60.085 41.667 0.30 0.00 0.00 2.82
3468 3573 5.277825 CGCAGTACTTTCCAAAAACATTGA 58.722 37.500 0.00 0.00 0.00 2.57
3469 3574 5.399301 CGCAGTACTTTCCAAAAACATTGAG 59.601 40.000 0.00 0.00 0.00 3.02
3470 3575 5.175673 GCAGTACTTTCCAAAAACATTGAGC 59.824 40.000 0.00 0.00 0.00 4.26
3471 3576 6.507023 CAGTACTTTCCAAAAACATTGAGCT 58.493 36.000 0.00 0.00 0.00 4.09
3472 3577 6.418819 CAGTACTTTCCAAAAACATTGAGCTG 59.581 38.462 0.00 0.00 0.00 4.24
3473 3578 5.343307 ACTTTCCAAAAACATTGAGCTGT 57.657 34.783 0.00 0.00 0.00 4.40
3474 3579 5.733676 ACTTTCCAAAAACATTGAGCTGTT 58.266 33.333 0.00 0.00 41.01 3.16
3483 3588 6.463995 AAACATTGAGCTGTTTTAACTCCA 57.536 33.333 0.00 0.00 44.76 3.86
3484 3589 5.695851 ACATTGAGCTGTTTTAACTCCAG 57.304 39.130 0.00 0.00 0.00 3.86
3485 3590 5.376625 ACATTGAGCTGTTTTAACTCCAGA 58.623 37.500 0.00 0.00 0.00 3.86
3486 3591 5.827797 ACATTGAGCTGTTTTAACTCCAGAA 59.172 36.000 0.00 0.00 0.00 3.02
3487 3592 6.321181 ACATTGAGCTGTTTTAACTCCAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
3488 3593 6.377327 TTGAGCTGTTTTAACTCCAGAAAG 57.623 37.500 0.00 0.00 0.00 2.62
3489 3594 4.275936 TGAGCTGTTTTAACTCCAGAAAGC 59.724 41.667 0.00 0.00 0.00 3.51
3490 3595 3.570125 AGCTGTTTTAACTCCAGAAAGCC 59.430 43.478 0.00 0.00 0.00 4.35
3491 3596 3.317993 GCTGTTTTAACTCCAGAAAGCCA 59.682 43.478 0.00 0.00 0.00 4.75
3492 3597 4.021981 GCTGTTTTAACTCCAGAAAGCCAT 60.022 41.667 0.00 0.00 0.00 4.40
3493 3598 5.509670 GCTGTTTTAACTCCAGAAAGCCATT 60.510 40.000 0.00 0.00 0.00 3.16
3494 3599 6.084326 TGTTTTAACTCCAGAAAGCCATTC 57.916 37.500 0.00 0.00 38.39 2.67
3495 3600 5.010617 TGTTTTAACTCCAGAAAGCCATTCC 59.989 40.000 0.00 0.00 38.94 3.01
3496 3601 2.978156 AACTCCAGAAAGCCATTCCA 57.022 45.000 0.00 0.00 38.94 3.53
3497 3602 2.978156 ACTCCAGAAAGCCATTCCAA 57.022 45.000 0.00 0.00 38.94 3.53
3498 3603 3.463048 ACTCCAGAAAGCCATTCCAAT 57.537 42.857 0.00 0.00 38.94 3.16
3499 3604 3.782992 ACTCCAGAAAGCCATTCCAATT 58.217 40.909 0.00 0.00 38.94 2.32
3500 3605 3.512724 ACTCCAGAAAGCCATTCCAATTG 59.487 43.478 0.00 0.00 38.94 2.32
3501 3606 3.509442 TCCAGAAAGCCATTCCAATTGT 58.491 40.909 4.43 0.00 38.94 2.71
3502 3607 3.511146 TCCAGAAAGCCATTCCAATTGTC 59.489 43.478 4.43 0.00 38.94 3.18
3503 3608 3.512724 CCAGAAAGCCATTCCAATTGTCT 59.487 43.478 4.43 0.00 38.94 3.41
3504 3609 4.706476 CCAGAAAGCCATTCCAATTGTCTA 59.294 41.667 4.43 0.00 38.94 2.59
3505 3610 5.163581 CCAGAAAGCCATTCCAATTGTCTAG 60.164 44.000 4.43 0.00 38.94 2.43
3506 3611 5.649395 CAGAAAGCCATTCCAATTGTCTAGA 59.351 40.000 4.43 0.00 38.94 2.43
3507 3612 6.151648 CAGAAAGCCATTCCAATTGTCTAGAA 59.848 38.462 4.43 1.07 38.94 2.10
3508 3613 6.894103 AGAAAGCCATTCCAATTGTCTAGAAT 59.106 34.615 4.43 3.48 38.94 2.40
3509 3614 7.398332 AGAAAGCCATTCCAATTGTCTAGAATT 59.602 33.333 4.43 0.00 38.94 2.17
3510 3615 8.593945 AAAGCCATTCCAATTGTCTAGAATTA 57.406 30.769 4.43 0.00 0.00 1.40
3511 3616 7.814264 AGCCATTCCAATTGTCTAGAATTAG 57.186 36.000 4.43 2.19 0.00 1.73
3512 3617 6.774656 AGCCATTCCAATTGTCTAGAATTAGG 59.225 38.462 4.43 6.07 0.00 2.69
3513 3618 6.547510 GCCATTCCAATTGTCTAGAATTAGGT 59.452 38.462 4.43 0.00 0.00 3.08
3514 3619 7.068716 GCCATTCCAATTGTCTAGAATTAGGTT 59.931 37.037 4.43 0.00 0.00 3.50
3515 3620 8.408601 CCATTCCAATTGTCTAGAATTAGGTTG 58.591 37.037 4.43 0.00 0.00 3.77
3516 3621 9.177608 CATTCCAATTGTCTAGAATTAGGTTGA 57.822 33.333 4.43 0.00 0.00 3.18
3517 3622 8.792830 TTCCAATTGTCTAGAATTAGGTTGAG 57.207 34.615 4.43 0.00 0.00 3.02
3518 3623 7.918076 TCCAATTGTCTAGAATTAGGTTGAGT 58.082 34.615 4.43 0.00 0.00 3.41
3519 3624 8.383175 TCCAATTGTCTAGAATTAGGTTGAGTT 58.617 33.333 4.43 0.00 0.00 3.01
3520 3625 9.014297 CCAATTGTCTAGAATTAGGTTGAGTTT 57.986 33.333 4.43 0.00 0.00 2.66
3529 3634 8.045176 AGAATTAGGTTGAGTTTTATGACAGC 57.955 34.615 0.00 0.00 0.00 4.40
3530 3635 7.885399 AGAATTAGGTTGAGTTTTATGACAGCT 59.115 33.333 0.00 0.00 0.00 4.24
3531 3636 9.162764 GAATTAGGTTGAGTTTTATGACAGCTA 57.837 33.333 0.00 0.00 0.00 3.32
3532 3637 8.723942 ATTAGGTTGAGTTTTATGACAGCTAG 57.276 34.615 0.00 0.00 0.00 3.42
3533 3638 6.115448 AGGTTGAGTTTTATGACAGCTAGT 57.885 37.500 0.00 0.00 0.00 2.57
3534 3639 6.534634 AGGTTGAGTTTTATGACAGCTAGTT 58.465 36.000 0.00 0.00 0.00 2.24
3535 3640 7.676947 AGGTTGAGTTTTATGACAGCTAGTTA 58.323 34.615 0.00 0.00 0.00 2.24
3536 3641 8.154856 AGGTTGAGTTTTATGACAGCTAGTTAA 58.845 33.333 0.00 0.00 0.00 2.01
3537 3642 8.780249 GGTTGAGTTTTATGACAGCTAGTTAAA 58.220 33.333 0.00 0.00 0.00 1.52
3542 3647 9.110502 AGTTTTATGACAGCTAGTTAAATAGGC 57.889 33.333 11.62 4.56 0.00 3.93
3543 3648 8.889717 GTTTTATGACAGCTAGTTAAATAGGCA 58.110 33.333 11.62 0.00 0.00 4.75
3544 3649 8.433421 TTTATGACAGCTAGTTAAATAGGCAC 57.567 34.615 11.62 0.00 0.00 5.01
3545 3650 5.414789 TGACAGCTAGTTAAATAGGCACA 57.585 39.130 11.62 4.38 0.00 4.57
3546 3651 5.175859 TGACAGCTAGTTAAATAGGCACAC 58.824 41.667 11.62 0.00 0.00 3.82
3547 3652 4.514401 ACAGCTAGTTAAATAGGCACACC 58.486 43.478 11.62 0.00 0.00 4.16
3561 3666 4.388378 GGCACACCTAGACTTACCTAAG 57.612 50.000 0.00 0.00 39.18 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 102 8.906867 ACTCTTCTGAGATCTAGAAAGAGAATG 58.093 37.037 29.29 15.42 42.73 2.67
155 159 0.517316 CTTTGGCACAGCGTCCTTAC 59.483 55.000 0.00 0.00 42.39 2.34
192 196 4.204799 GGGTCACCACTTAAACAGTTTCT 58.795 43.478 0.48 0.00 36.50 2.52
193 197 3.949113 TGGGTCACCACTTAAACAGTTTC 59.051 43.478 0.48 0.00 43.37 2.78
302 311 6.953520 TGGATGGAAACTAATGAGTCCAATTT 59.046 34.615 0.00 0.00 34.24 1.82
373 387 0.321919 TCTGCTGTGATGGTTCTGCC 60.322 55.000 0.00 0.00 37.90 4.85
374 388 1.527034 TTCTGCTGTGATGGTTCTGC 58.473 50.000 0.00 0.00 0.00 4.26
378 392 4.070716 CTCTCTTTTCTGCTGTGATGGTT 58.929 43.478 0.00 0.00 0.00 3.67
400 414 3.688185 TCTGCAGATGATCAGTTCAAAGC 59.312 43.478 13.74 2.03 38.03 3.51
403 417 5.093849 TGATCTGCAGATGATCAGTTCAA 57.906 39.130 33.33 5.94 43.47 2.69
442 459 1.209261 TGATGCTATCTTGCCCGTTGA 59.791 47.619 0.00 0.00 0.00 3.18
444 461 2.645838 ATGATGCTATCTTGCCCGTT 57.354 45.000 0.00 0.00 0.00 4.44
462 479 9.748708 CCGTTCATTTGTGGATTATGAATTTAT 57.251 29.630 0.00 0.00 39.61 1.40
463 480 8.744652 ACCGTTCATTTGTGGATTATGAATTTA 58.255 29.630 0.00 0.00 39.61 1.40
464 481 7.610865 ACCGTTCATTTGTGGATTATGAATTT 58.389 30.769 0.00 0.00 39.61 1.82
465 482 7.169158 ACCGTTCATTTGTGGATTATGAATT 57.831 32.000 0.00 0.00 39.61 2.17
466 483 6.458206 CGACCGTTCATTTGTGGATTATGAAT 60.458 38.462 0.00 0.00 39.61 2.57
467 484 5.163804 CGACCGTTCATTTGTGGATTATGAA 60.164 40.000 0.00 0.00 36.29 2.57
514 531 2.846827 ACAGGCTAGAGCTAATTTGGGT 59.153 45.455 0.81 0.00 41.70 4.51
590 611 6.152379 GTGTTCTCAAGTCAATTGATTTCCC 58.848 40.000 12.12 0.00 46.71 3.97
626 648 6.830114 AAGTTTTCGTGTTGTGTTCAAAAA 57.170 29.167 0.00 0.00 35.20 1.94
627 649 8.522178 AATAAGTTTTCGTGTTGTGTTCAAAA 57.478 26.923 0.00 0.00 35.20 2.44
628 650 8.428536 CAAATAAGTTTTCGTGTTGTGTTCAAA 58.571 29.630 0.00 0.00 35.20 2.69
629 651 7.410942 GCAAATAAGTTTTCGTGTTGTGTTCAA 60.411 33.333 0.00 0.00 0.00 2.69
630 652 6.034044 GCAAATAAGTTTTCGTGTTGTGTTCA 59.966 34.615 0.00 0.00 0.00 3.18
631 653 6.399626 GCAAATAAGTTTTCGTGTTGTGTTC 58.600 36.000 0.00 0.00 0.00 3.18
632 654 5.003967 CGCAAATAAGTTTTCGTGTTGTGTT 59.996 36.000 0.00 0.00 30.94 3.32
633 655 4.497608 CGCAAATAAGTTTTCGTGTTGTGT 59.502 37.500 0.00 0.00 30.94 3.72
634 656 4.602957 GCGCAAATAAGTTTTCGTGTTGTG 60.603 41.667 0.30 0.00 36.54 3.33
635 657 3.484285 GCGCAAATAAGTTTTCGTGTTGT 59.516 39.130 0.30 0.00 36.54 3.32
636 658 3.418646 CGCGCAAATAAGTTTTCGTGTTG 60.419 43.478 8.75 0.00 38.84 3.33
687 711 9.696917 GAACAATTCTTATTGGTGAGATTTTGT 57.303 29.630 0.00 0.00 41.70 2.83
768 800 5.030936 GCTTCACAAGAGTTTCAAACAGAC 58.969 41.667 2.41 0.00 0.00 3.51
772 804 4.105486 GGTGCTTCACAAGAGTTTCAAAC 58.895 43.478 0.00 0.00 35.86 2.93
785 817 1.876156 CCAAAGACTCTGGTGCTTCAC 59.124 52.381 0.00 0.00 0.00 3.18
787 819 1.528129 CCCAAAGACTCTGGTGCTTC 58.472 55.000 0.00 0.00 31.45 3.86
796 845 1.076727 CCCCAACCCCCAAAGACTC 59.923 63.158 0.00 0.00 0.00 3.36
801 850 1.149782 TAGATGCCCCAACCCCCAAA 61.150 55.000 0.00 0.00 0.00 3.28
803 852 0.928726 AATAGATGCCCCAACCCCCA 60.929 55.000 0.00 0.00 0.00 4.96
804 853 0.264657 AAATAGATGCCCCAACCCCC 59.735 55.000 0.00 0.00 0.00 5.40
805 854 3.322191 TTAAATAGATGCCCCAACCCC 57.678 47.619 0.00 0.00 0.00 4.95
806 855 4.027437 TGTTTAAATAGATGCCCCAACCC 58.973 43.478 0.00 0.00 0.00 4.11
807 856 4.441495 GCTGTTTAAATAGATGCCCCAACC 60.441 45.833 15.41 0.00 0.00 3.77
808 857 4.159506 TGCTGTTTAAATAGATGCCCCAAC 59.840 41.667 15.41 0.00 0.00 3.77
809 858 4.159506 GTGCTGTTTAAATAGATGCCCCAA 59.840 41.667 15.41 0.00 0.00 4.12
810 859 3.699038 GTGCTGTTTAAATAGATGCCCCA 59.301 43.478 15.41 0.64 0.00 4.96
850 899 2.091389 TGAATGGGAGGAGAGGAGAGAG 60.091 54.545 0.00 0.00 0.00 3.20
872 921 3.674997 TCGACAAAAGAATGGGGAGAAG 58.325 45.455 0.00 0.00 0.00 2.85
879 928 5.391312 AATTCCCTTCGACAAAAGAATGG 57.609 39.130 0.00 0.00 35.56 3.16
992 1044 1.004560 ATCCGCGCCATTGATCGAT 60.005 52.632 0.00 0.00 0.00 3.59
1359 1420 2.033448 TTGGCGACCTTGGCGAAT 59.967 55.556 0.00 0.00 35.20 3.34
1779 1843 3.222855 ATGAGGCGGAGGAGCTCG 61.223 66.667 7.83 0.00 37.29 5.03
1881 1945 2.512515 ATGCGGAAGGAGAAGCGC 60.513 61.111 0.00 0.00 32.19 5.92
2037 2101 4.129737 CCGCACGACGTCATCCCT 62.130 66.667 17.16 0.00 41.42 4.20
2319 2383 4.755507 ACCGACCCGTCCTCCCTC 62.756 72.222 0.00 0.00 0.00 4.30
2867 2963 5.555017 ACATCAAGCATCTCACACTTAACT 58.445 37.500 0.00 0.00 0.00 2.24
2883 2979 9.069078 GTGAATTCATACATCAACAACATCAAG 57.931 33.333 12.12 0.00 0.00 3.02
2991 3096 5.405269 TGACACATAAGTTTGACACTGATCG 59.595 40.000 0.00 0.00 35.12 3.69
3040 3145 6.804783 GGTATAACAACAATTGGTGTACTTGC 59.195 38.462 28.57 18.11 46.84 4.01
3041 3146 8.106247 AGGTATAACAACAATTGGTGTACTTG 57.894 34.615 28.57 14.94 46.84 3.16
3042 3147 9.969001 ATAGGTATAACAACAATTGGTGTACTT 57.031 29.630 28.57 20.63 46.84 2.24
3053 3158 8.857098 CCAGCTCTAGTATAGGTATAACAACAA 58.143 37.037 0.00 0.00 39.78 2.83
3054 3159 7.039923 GCCAGCTCTAGTATAGGTATAACAACA 60.040 40.741 0.00 0.00 39.78 3.33
3055 3160 7.314393 GCCAGCTCTAGTATAGGTATAACAAC 58.686 42.308 0.00 0.00 39.78 3.32
3056 3161 6.150641 CGCCAGCTCTAGTATAGGTATAACAA 59.849 42.308 0.00 0.00 39.78 2.83
3057 3162 5.646793 CGCCAGCTCTAGTATAGGTATAACA 59.353 44.000 0.00 0.00 39.78 2.41
3058 3163 5.066246 CCGCCAGCTCTAGTATAGGTATAAC 59.934 48.000 0.00 0.00 39.78 1.89
3059 3164 5.045359 TCCGCCAGCTCTAGTATAGGTATAA 60.045 44.000 0.00 0.00 39.78 0.98
3060 3165 4.472470 TCCGCCAGCTCTAGTATAGGTATA 59.528 45.833 0.00 0.00 39.78 1.47
3061 3166 3.266254 TCCGCCAGCTCTAGTATAGGTAT 59.734 47.826 0.00 0.00 39.78 2.73
3062 3167 2.641321 TCCGCCAGCTCTAGTATAGGTA 59.359 50.000 0.00 0.00 39.78 3.08
3063 3168 1.424302 TCCGCCAGCTCTAGTATAGGT 59.576 52.381 0.00 0.00 39.78 3.08
3064 3169 2.201921 TCCGCCAGCTCTAGTATAGG 57.798 55.000 0.00 0.00 39.78 2.57
3065 3170 3.348119 TGATCCGCCAGCTCTAGTATAG 58.652 50.000 0.00 0.00 41.04 1.31
3066 3171 3.434940 TGATCCGCCAGCTCTAGTATA 57.565 47.619 0.00 0.00 0.00 1.47
3067 3172 2.294449 TGATCCGCCAGCTCTAGTAT 57.706 50.000 0.00 0.00 0.00 2.12
3068 3173 2.067365 TTGATCCGCCAGCTCTAGTA 57.933 50.000 0.00 0.00 0.00 1.82
3069 3174 1.069823 CATTGATCCGCCAGCTCTAGT 59.930 52.381 0.00 0.00 0.00 2.57
3070 3175 1.607509 CCATTGATCCGCCAGCTCTAG 60.608 57.143 0.00 0.00 0.00 2.43
3071 3176 0.394192 CCATTGATCCGCCAGCTCTA 59.606 55.000 0.00 0.00 0.00 2.43
3072 3177 1.147824 CCATTGATCCGCCAGCTCT 59.852 57.895 0.00 0.00 0.00 4.09
3073 3178 2.550101 GCCATTGATCCGCCAGCTC 61.550 63.158 0.00 0.00 0.00 4.09
3074 3179 2.517875 GCCATTGATCCGCCAGCT 60.518 61.111 0.00 0.00 0.00 4.24
3075 3180 2.517875 AGCCATTGATCCGCCAGC 60.518 61.111 0.00 0.00 0.00 4.85
3076 3181 0.749091 TTGAGCCATTGATCCGCCAG 60.749 55.000 0.00 0.00 0.00 4.85
3077 3182 0.106569 ATTGAGCCATTGATCCGCCA 60.107 50.000 0.00 0.00 0.00 5.69
3078 3183 0.313043 CATTGAGCCATTGATCCGCC 59.687 55.000 0.00 0.00 0.00 6.13
3079 3184 0.313043 CCATTGAGCCATTGATCCGC 59.687 55.000 0.00 0.00 0.00 5.54
3080 3185 0.313043 GCCATTGAGCCATTGATCCG 59.687 55.000 0.00 0.00 0.00 4.18
3090 3195 1.331756 CAGATTACGTGGCCATTGAGC 59.668 52.381 9.72 0.00 0.00 4.26
3091 3196 2.905075 TCAGATTACGTGGCCATTGAG 58.095 47.619 9.72 3.56 0.00 3.02
3092 3197 3.270027 CTTCAGATTACGTGGCCATTGA 58.730 45.455 9.72 1.93 0.00 2.57
3093 3198 3.009723 ACTTCAGATTACGTGGCCATTG 58.990 45.455 9.72 7.70 0.00 2.82
3094 3199 3.350219 ACTTCAGATTACGTGGCCATT 57.650 42.857 9.72 0.85 0.00 3.16
3095 3200 3.270877 GAACTTCAGATTACGTGGCCAT 58.729 45.455 9.72 0.00 0.00 4.40
3096 3201 2.614481 GGAACTTCAGATTACGTGGCCA 60.614 50.000 0.00 0.00 0.00 5.36
3097 3202 2.007608 GGAACTTCAGATTACGTGGCC 58.992 52.381 0.00 0.00 0.00 5.36
3098 3203 1.659098 CGGAACTTCAGATTACGTGGC 59.341 52.381 0.00 0.00 0.00 5.01
3099 3204 3.226346 TCGGAACTTCAGATTACGTGG 57.774 47.619 0.00 0.00 0.00 4.94
3100 3205 3.060895 GCTTCGGAACTTCAGATTACGTG 59.939 47.826 0.00 0.00 0.00 4.49
3101 3206 3.251571 GCTTCGGAACTTCAGATTACGT 58.748 45.455 0.00 0.00 0.00 3.57
3102 3207 3.250744 TGCTTCGGAACTTCAGATTACG 58.749 45.455 0.00 0.00 0.00 3.18
3103 3208 5.582665 AGATTGCTTCGGAACTTCAGATTAC 59.417 40.000 0.00 0.00 0.00 1.89
3104 3209 5.734720 AGATTGCTTCGGAACTTCAGATTA 58.265 37.500 0.00 0.00 0.00 1.75
3105 3210 4.583871 AGATTGCTTCGGAACTTCAGATT 58.416 39.130 0.00 0.00 0.00 2.40
3106 3211 4.213564 AGATTGCTTCGGAACTTCAGAT 57.786 40.909 0.00 0.00 0.00 2.90
3107 3212 3.685139 AGATTGCTTCGGAACTTCAGA 57.315 42.857 0.00 0.00 0.00 3.27
3108 3213 3.308323 GCTAGATTGCTTCGGAACTTCAG 59.692 47.826 0.00 0.00 0.00 3.02
3109 3214 3.262420 GCTAGATTGCTTCGGAACTTCA 58.738 45.455 0.00 0.00 0.00 3.02
3110 3215 3.262420 TGCTAGATTGCTTCGGAACTTC 58.738 45.455 0.00 0.00 0.00 3.01
3111 3216 3.334583 TGCTAGATTGCTTCGGAACTT 57.665 42.857 0.00 0.00 0.00 2.66
3112 3217 3.550437 ATGCTAGATTGCTTCGGAACT 57.450 42.857 0.00 0.00 0.00 3.01
3113 3218 5.502606 GTTTATGCTAGATTGCTTCGGAAC 58.497 41.667 0.00 0.00 0.00 3.62
3114 3219 4.270084 CGTTTATGCTAGATTGCTTCGGAA 59.730 41.667 0.00 0.00 0.00 4.30
3115 3220 3.802139 CGTTTATGCTAGATTGCTTCGGA 59.198 43.478 0.00 0.00 0.00 4.55
3116 3221 3.802139 TCGTTTATGCTAGATTGCTTCGG 59.198 43.478 0.00 0.00 0.00 4.30
3117 3222 5.191059 GTTCGTTTATGCTAGATTGCTTCG 58.809 41.667 0.00 0.00 0.00 3.79
3118 3223 5.064707 TGGTTCGTTTATGCTAGATTGCTTC 59.935 40.000 0.00 0.00 0.00 3.86
3119 3224 4.941263 TGGTTCGTTTATGCTAGATTGCTT 59.059 37.500 0.00 0.00 0.00 3.91
3120 3225 4.513442 TGGTTCGTTTATGCTAGATTGCT 58.487 39.130 0.00 0.00 0.00 3.91
3121 3226 4.875544 TGGTTCGTTTATGCTAGATTGC 57.124 40.909 0.00 0.00 0.00 3.56
3122 3227 5.354234 AGGTTGGTTCGTTTATGCTAGATTG 59.646 40.000 0.00 0.00 0.00 2.67
3123 3228 5.354234 CAGGTTGGTTCGTTTATGCTAGATT 59.646 40.000 0.00 0.00 0.00 2.40
3124 3229 4.876107 CAGGTTGGTTCGTTTATGCTAGAT 59.124 41.667 0.00 0.00 0.00 1.98
3125 3230 4.250464 CAGGTTGGTTCGTTTATGCTAGA 58.750 43.478 0.00 0.00 0.00 2.43
3126 3231 4.000988 ACAGGTTGGTTCGTTTATGCTAG 58.999 43.478 0.00 0.00 0.00 3.42
3127 3232 3.749088 CACAGGTTGGTTCGTTTATGCTA 59.251 43.478 0.00 0.00 0.00 3.49
3128 3233 2.552315 CACAGGTTGGTTCGTTTATGCT 59.448 45.455 0.00 0.00 0.00 3.79
3129 3234 2.550606 TCACAGGTTGGTTCGTTTATGC 59.449 45.455 0.00 0.00 0.00 3.14
3130 3235 5.153513 CAATCACAGGTTGGTTCGTTTATG 58.846 41.667 0.00 0.00 0.00 1.90
3131 3236 4.217550 CCAATCACAGGTTGGTTCGTTTAT 59.782 41.667 0.85 0.00 40.94 1.40
3132 3237 3.566322 CCAATCACAGGTTGGTTCGTTTA 59.434 43.478 0.85 0.00 40.94 2.01
3133 3238 2.360801 CCAATCACAGGTTGGTTCGTTT 59.639 45.455 0.85 0.00 40.94 3.60
3134 3239 1.953686 CCAATCACAGGTTGGTTCGTT 59.046 47.619 0.85 0.00 40.94 3.85
3135 3240 1.142060 TCCAATCACAGGTTGGTTCGT 59.858 47.619 8.75 0.00 45.05 3.85
3136 3241 1.890876 TCCAATCACAGGTTGGTTCG 58.109 50.000 8.75 0.00 45.05 3.95
3137 3242 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
3138 3243 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
3139 3244 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
3140 3245 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
3141 3246 4.588899 TCTAACCATCCAATCACAGGTTG 58.411 43.478 0.00 0.00 42.19 3.77
3142 3247 4.324563 CCTCTAACCATCCAATCACAGGTT 60.325 45.833 0.00 0.00 44.23 3.50
3143 3248 3.200825 CCTCTAACCATCCAATCACAGGT 59.799 47.826 0.00 0.00 0.00 4.00
3144 3249 3.434167 CCCTCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
3145 3250 3.455910 TCCCTCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
3146 3251 3.459828 TCCCTCTAACCATCCAATCACA 58.540 45.455 0.00 0.00 0.00 3.58
3147 3252 4.713792 ATCCCTCTAACCATCCAATCAC 57.286 45.455 0.00 0.00 0.00 3.06
3148 3253 5.307976 CACTATCCCTCTAACCATCCAATCA 59.692 44.000 0.00 0.00 0.00 2.57
3149 3254 5.280215 CCACTATCCCTCTAACCATCCAATC 60.280 48.000 0.00 0.00 0.00 2.67
3150 3255 4.599241 CCACTATCCCTCTAACCATCCAAT 59.401 45.833 0.00 0.00 0.00 3.16
3151 3256 3.973973 CCACTATCCCTCTAACCATCCAA 59.026 47.826 0.00 0.00 0.00 3.53
3152 3257 3.051341 ACCACTATCCCTCTAACCATCCA 60.051 47.826 0.00 0.00 0.00 3.41
3153 3258 3.588569 ACCACTATCCCTCTAACCATCC 58.411 50.000 0.00 0.00 0.00 3.51
3154 3259 5.422650 GGATACCACTATCCCTCTAACCATC 59.577 48.000 0.00 0.00 42.06 3.51
3155 3260 5.342866 GGATACCACTATCCCTCTAACCAT 58.657 45.833 0.00 0.00 42.06 3.55
3156 3261 4.748701 GGATACCACTATCCCTCTAACCA 58.251 47.826 0.00 0.00 42.06 3.67
3165 3270 3.314693 TGGGTTGAGGATACCACTATCC 58.685 50.000 0.00 0.00 46.62 2.59
3166 3271 4.593206 TGATGGGTTGAGGATACCACTATC 59.407 45.833 0.00 0.00 37.40 2.08
3167 3272 4.566837 TGATGGGTTGAGGATACCACTAT 58.433 43.478 0.00 0.00 37.40 2.12
3168 3273 3.967326 CTGATGGGTTGAGGATACCACTA 59.033 47.826 0.00 0.00 37.40 2.74
3169 3274 2.774234 CTGATGGGTTGAGGATACCACT 59.226 50.000 0.00 0.00 37.40 4.00
3170 3275 2.158755 CCTGATGGGTTGAGGATACCAC 60.159 54.545 0.00 0.00 37.40 4.16
3171 3276 2.126882 CCTGATGGGTTGAGGATACCA 58.873 52.381 0.00 0.00 37.40 3.25
3172 3277 2.938956 CCTGATGGGTTGAGGATACC 57.061 55.000 0.00 0.00 34.82 2.73
3189 3294 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
3190 3295 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
3191 3296 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
3192 3297 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
3193 3298 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
3194 3299 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
3195 3300 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
3196 3301 0.613260 TAATGCGAGCACCAGGACTT 59.387 50.000 0.00 0.00 0.00 3.01
3197 3302 0.833287 ATAATGCGAGCACCAGGACT 59.167 50.000 0.00 0.00 0.00 3.85
3198 3303 1.599542 GAATAATGCGAGCACCAGGAC 59.400 52.381 0.00 0.00 0.00 3.85
3199 3304 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
3200 3305 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
3201 3306 1.959042 AGGAATAATGCGAGCACCAG 58.041 50.000 0.00 0.00 0.00 4.00
3202 3307 2.698274 TCTAGGAATAATGCGAGCACCA 59.302 45.455 0.00 0.00 0.00 4.17
3203 3308 3.386768 TCTAGGAATAATGCGAGCACC 57.613 47.619 0.00 0.00 0.00 5.01
3204 3309 5.931441 AAATCTAGGAATAATGCGAGCAC 57.069 39.130 0.00 0.00 0.00 4.40
3205 3310 8.621532 AAATAAATCTAGGAATAATGCGAGCA 57.378 30.769 0.00 0.00 0.00 4.26
3206 3311 8.721478 TGAAATAAATCTAGGAATAATGCGAGC 58.279 33.333 0.00 0.00 0.00 5.03
3208 3313 9.219603 CCTGAAATAAATCTAGGAATAATGCGA 57.780 33.333 0.00 0.00 0.00 5.10
3209 3314 9.219603 TCCTGAAATAAATCTAGGAATAATGCG 57.780 33.333 0.00 0.00 34.77 4.73
3218 3323 9.305925 GCACAAAAATCCTGAAATAAATCTAGG 57.694 33.333 0.00 0.00 0.00 3.02
3219 3324 9.013490 CGCACAAAAATCCTGAAATAAATCTAG 57.987 33.333 0.00 0.00 0.00 2.43
3220 3325 8.735315 TCGCACAAAAATCCTGAAATAAATCTA 58.265 29.630 0.00 0.00 0.00 1.98
3221 3326 7.601856 TCGCACAAAAATCCTGAAATAAATCT 58.398 30.769 0.00 0.00 0.00 2.40
3222 3327 7.810766 TCGCACAAAAATCCTGAAATAAATC 57.189 32.000 0.00 0.00 0.00 2.17
3223 3328 7.201548 GCATCGCACAAAAATCCTGAAATAAAT 60.202 33.333 0.00 0.00 0.00 1.40
3224 3329 6.090628 GCATCGCACAAAAATCCTGAAATAAA 59.909 34.615 0.00 0.00 0.00 1.40
3225 3330 5.576384 GCATCGCACAAAAATCCTGAAATAA 59.424 36.000 0.00 0.00 0.00 1.40
3226 3331 5.101628 GCATCGCACAAAAATCCTGAAATA 58.898 37.500 0.00 0.00 0.00 1.40
3227 3332 3.928375 GCATCGCACAAAAATCCTGAAAT 59.072 39.130 0.00 0.00 0.00 2.17
3228 3333 3.243670 TGCATCGCACAAAAATCCTGAAA 60.244 39.130 0.00 0.00 31.71 2.69
3229 3334 2.295629 TGCATCGCACAAAAATCCTGAA 59.704 40.909 0.00 0.00 31.71 3.02
3230 3335 1.885233 TGCATCGCACAAAAATCCTGA 59.115 42.857 0.00 0.00 31.71 3.86
3231 3336 2.350899 TGCATCGCACAAAAATCCTG 57.649 45.000 0.00 0.00 31.71 3.86
3232 3337 4.924305 ATATGCATCGCACAAAAATCCT 57.076 36.364 0.19 0.00 43.04 3.24
3233 3338 4.146961 CGAATATGCATCGCACAAAAATCC 59.853 41.667 0.19 0.00 43.04 3.01
3234 3339 4.146961 CCGAATATGCATCGCACAAAAATC 59.853 41.667 0.19 0.00 43.04 2.17
3235 3340 4.043750 CCGAATATGCATCGCACAAAAAT 58.956 39.130 0.19 0.00 43.04 1.82
3236 3341 3.433709 CCGAATATGCATCGCACAAAAA 58.566 40.909 0.19 0.00 43.04 1.94
3237 3342 2.223456 CCCGAATATGCATCGCACAAAA 60.223 45.455 0.19 0.00 43.04 2.44
3238 3343 1.333308 CCCGAATATGCATCGCACAAA 59.667 47.619 0.19 0.00 43.04 2.83
3239 3344 0.943673 CCCGAATATGCATCGCACAA 59.056 50.000 0.19 0.00 43.04 3.33
3240 3345 0.105778 TCCCGAATATGCATCGCACA 59.894 50.000 0.19 0.00 43.04 4.57
3241 3346 0.792640 CTCCCGAATATGCATCGCAC 59.207 55.000 0.19 0.00 43.04 5.34
3242 3347 0.320683 CCTCCCGAATATGCATCGCA 60.321 55.000 0.19 0.00 44.86 5.10
3243 3348 0.037326 TCCTCCCGAATATGCATCGC 60.037 55.000 0.19 0.00 38.93 4.58
3244 3349 1.546029 TCTCCTCCCGAATATGCATCG 59.454 52.381 0.19 0.78 39.92 3.84
3245 3350 2.672478 CGTCTCCTCCCGAATATGCATC 60.672 54.545 0.19 0.00 0.00 3.91
3246 3351 1.273606 CGTCTCCTCCCGAATATGCAT 59.726 52.381 3.79 3.79 0.00 3.96
3247 3352 0.673985 CGTCTCCTCCCGAATATGCA 59.326 55.000 0.00 0.00 0.00 3.96
3248 3353 0.674534 ACGTCTCCTCCCGAATATGC 59.325 55.000 0.00 0.00 0.00 3.14
3249 3354 2.288273 GGAACGTCTCCTCCCGAATATG 60.288 54.545 8.87 0.00 41.61 1.78
3250 3355 1.962100 GGAACGTCTCCTCCCGAATAT 59.038 52.381 8.87 0.00 41.61 1.28
3251 3356 1.396653 GGAACGTCTCCTCCCGAATA 58.603 55.000 8.87 0.00 41.61 1.75
3252 3357 1.328430 GGGAACGTCTCCTCCCGAAT 61.328 60.000 7.28 0.00 44.68 3.34
3253 3358 1.980772 GGGAACGTCTCCTCCCGAA 60.981 63.158 7.28 0.00 44.68 4.30
3254 3359 2.362120 GGGAACGTCTCCTCCCGA 60.362 66.667 7.28 0.00 44.68 5.14
3278 3383 0.167689 GTCACCGTAGACACCTCGTC 59.832 60.000 0.16 0.00 45.77 4.20
3279 3384 0.250640 AGTCACCGTAGACACCTCGT 60.251 55.000 7.16 0.00 40.98 4.18
3280 3385 0.879765 AAGTCACCGTAGACACCTCG 59.120 55.000 7.16 0.00 40.98 4.63
3281 3386 2.035576 ACAAAGTCACCGTAGACACCTC 59.964 50.000 7.16 0.00 40.98 3.85
3282 3387 2.037144 ACAAAGTCACCGTAGACACCT 58.963 47.619 7.16 0.00 40.98 4.00
3283 3388 2.521105 ACAAAGTCACCGTAGACACC 57.479 50.000 7.16 0.00 40.98 4.16
3284 3389 6.535274 AATTTACAAAGTCACCGTAGACAC 57.465 37.500 7.16 0.00 40.98 3.67
3285 3390 6.762187 TGAAATTTACAAAGTCACCGTAGACA 59.238 34.615 7.16 0.00 40.98 3.41
3286 3391 7.181143 TGAAATTTACAAAGTCACCGTAGAC 57.819 36.000 0.00 0.00 38.81 2.59
3287 3392 7.711772 TCTTGAAATTTACAAAGTCACCGTAGA 59.288 33.333 0.00 0.00 0.00 2.59
3288 3393 7.857569 TCTTGAAATTTACAAAGTCACCGTAG 58.142 34.615 0.00 0.00 0.00 3.51
3289 3394 7.789273 TCTTGAAATTTACAAAGTCACCGTA 57.211 32.000 0.00 0.00 0.00 4.02
3290 3395 6.687081 TCTTGAAATTTACAAAGTCACCGT 57.313 33.333 0.00 0.00 0.00 4.83
3291 3396 7.359595 TCATCTTGAAATTTACAAAGTCACCG 58.640 34.615 0.00 0.00 0.00 4.94
3298 3403 9.806203 CCAGCATATCATCTTGAAATTTACAAA 57.194 29.630 0.00 0.00 0.00 2.83
3299 3404 7.922278 GCCAGCATATCATCTTGAAATTTACAA 59.078 33.333 0.00 0.00 0.00 2.41
3300 3405 7.286087 AGCCAGCATATCATCTTGAAATTTACA 59.714 33.333 0.00 0.00 0.00 2.41
3301 3406 7.655490 AGCCAGCATATCATCTTGAAATTTAC 58.345 34.615 0.00 0.00 0.00 2.01
3302 3407 7.503230 TGAGCCAGCATATCATCTTGAAATTTA 59.497 33.333 0.00 0.00 0.00 1.40
3303 3408 6.322969 TGAGCCAGCATATCATCTTGAAATTT 59.677 34.615 0.00 0.00 0.00 1.82
3304 3409 5.831525 TGAGCCAGCATATCATCTTGAAATT 59.168 36.000 0.00 0.00 0.00 1.82
3305 3410 5.382616 TGAGCCAGCATATCATCTTGAAAT 58.617 37.500 0.00 0.00 0.00 2.17
3306 3411 4.784177 TGAGCCAGCATATCATCTTGAAA 58.216 39.130 0.00 0.00 0.00 2.69
3307 3412 4.141551 ACTGAGCCAGCATATCATCTTGAA 60.142 41.667 2.50 0.00 34.37 2.69
3308 3413 3.390311 ACTGAGCCAGCATATCATCTTGA 59.610 43.478 2.50 0.00 34.37 3.02
3309 3414 3.741249 ACTGAGCCAGCATATCATCTTG 58.259 45.455 2.50 0.00 34.37 3.02
3310 3415 3.647113 AGACTGAGCCAGCATATCATCTT 59.353 43.478 2.50 0.00 34.37 2.40
3311 3416 3.241156 AGACTGAGCCAGCATATCATCT 58.759 45.455 2.50 0.00 34.37 2.90
3312 3417 3.681593 AGACTGAGCCAGCATATCATC 57.318 47.619 2.50 0.00 34.37 2.92
3313 3418 4.387598 GAAAGACTGAGCCAGCATATCAT 58.612 43.478 2.50 0.00 34.37 2.45
3314 3419 3.739209 CGAAAGACTGAGCCAGCATATCA 60.739 47.826 2.50 0.00 34.37 2.15
3315 3420 2.799412 CGAAAGACTGAGCCAGCATATC 59.201 50.000 2.50 0.00 34.37 1.63
3316 3421 2.432146 TCGAAAGACTGAGCCAGCATAT 59.568 45.455 2.50 0.00 34.37 1.78
3317 3422 1.824852 TCGAAAGACTGAGCCAGCATA 59.175 47.619 2.50 0.00 34.37 3.14
3318 3423 0.610174 TCGAAAGACTGAGCCAGCAT 59.390 50.000 2.50 0.00 34.37 3.79
3319 3424 0.392706 TTCGAAAGACTGAGCCAGCA 59.607 50.000 0.00 0.00 41.84 4.41
3320 3425 1.074752 CTTCGAAAGACTGAGCCAGC 58.925 55.000 0.00 0.00 41.84 4.85
3321 3426 1.001406 ACCTTCGAAAGACTGAGCCAG 59.999 52.381 0.00 1.16 41.84 4.85
3322 3427 1.048601 ACCTTCGAAAGACTGAGCCA 58.951 50.000 0.00 0.00 41.84 4.75
3323 3428 1.433534 CACCTTCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 41.84 4.70
3324 3429 0.793250 GCACCTTCGAAAGACTGAGC 59.207 55.000 0.00 0.00 41.84 4.26
3325 3430 2.288457 TGAGCACCTTCGAAAGACTGAG 60.288 50.000 0.00 0.00 41.84 3.35
3326 3431 1.686587 TGAGCACCTTCGAAAGACTGA 59.313 47.619 0.00 0.00 41.84 3.41
3327 3432 2.154854 TGAGCACCTTCGAAAGACTG 57.845 50.000 0.00 0.00 41.84 3.51
3328 3433 3.118956 CCTATGAGCACCTTCGAAAGACT 60.119 47.826 0.00 0.00 41.84 3.24
3329 3434 3.190874 CCTATGAGCACCTTCGAAAGAC 58.809 50.000 0.00 0.00 41.84 3.01
3330 3435 2.168521 CCCTATGAGCACCTTCGAAAGA 59.831 50.000 0.00 0.00 39.20 2.52
3331 3436 2.168521 TCCCTATGAGCACCTTCGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
3332 3437 2.184533 TCCCTATGAGCACCTTCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
3333 3438 1.860641 TCCCTATGAGCACCTTCGAA 58.139 50.000 0.00 0.00 0.00 3.71
3334 3439 2.088104 ATCCCTATGAGCACCTTCGA 57.912 50.000 0.00 0.00 0.00 3.71
3335 3440 2.232452 CCTATCCCTATGAGCACCTTCG 59.768 54.545 0.00 0.00 0.00 3.79
3336 3441 2.569404 CCCTATCCCTATGAGCACCTTC 59.431 54.545 0.00 0.00 0.00 3.46
3337 3442 2.089925 ACCCTATCCCTATGAGCACCTT 60.090 50.000 0.00 0.00 0.00 3.50
3338 3443 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
3339 3444 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
3340 3445 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
3341 3446 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
3342 3447 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
3343 3448 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
3344 3449 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
3345 3450 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
3346 3451 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
3347 3452 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
3348 3453 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
3349 3454 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3350 3455 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
3351 3456 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
3352 3457 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
3353 3458 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3356 3461 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
3357 3462 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
3358 3463 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
3359 3464 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
3360 3465 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
3361 3466 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
3362 3467 0.992072 CCTCTATGAACGCACACACG 59.008 55.000 0.00 0.00 39.50 4.49
3363 3468 0.721718 GCCTCTATGAACGCACACAC 59.278 55.000 0.00 0.00 0.00 3.82
3364 3469 0.735978 CGCCTCTATGAACGCACACA 60.736 55.000 0.00 0.00 0.00 3.72
3365 3470 0.457853 TCGCCTCTATGAACGCACAC 60.458 55.000 0.00 0.00 0.00 3.82
3366 3471 0.179137 CTCGCCTCTATGAACGCACA 60.179 55.000 0.00 0.00 0.00 4.57
3367 3472 0.179134 ACTCGCCTCTATGAACGCAC 60.179 55.000 0.00 0.00 0.00 5.34
3368 3473 0.179137 CACTCGCCTCTATGAACGCA 60.179 55.000 0.00 0.00 0.00 5.24
3369 3474 1.483424 GCACTCGCCTCTATGAACGC 61.483 60.000 0.00 0.00 0.00 4.84
3370 3475 0.179137 TGCACTCGCCTCTATGAACG 60.179 55.000 0.00 0.00 37.32 3.95
3371 3476 1.863454 CATGCACTCGCCTCTATGAAC 59.137 52.381 0.00 0.00 37.32 3.18
3372 3477 1.807755 GCATGCACTCGCCTCTATGAA 60.808 52.381 14.21 0.00 37.32 2.57
3373 3478 0.249615 GCATGCACTCGCCTCTATGA 60.250 55.000 14.21 0.00 37.32 2.15
3374 3479 1.554891 CGCATGCACTCGCCTCTATG 61.555 60.000 19.57 0.00 37.32 2.23
3375 3480 1.300465 CGCATGCACTCGCCTCTAT 60.300 57.895 19.57 0.00 37.32 1.98
3376 3481 2.104928 CGCATGCACTCGCCTCTA 59.895 61.111 19.57 0.00 37.32 2.43
3382 3487 1.206115 TATACACGCGCATGCACTCG 61.206 55.000 19.57 18.88 42.97 4.18
3383 3488 0.229753 GTATACACGCGCATGCACTC 59.770 55.000 19.57 5.00 42.97 3.51
3384 3489 1.479420 CGTATACACGCGCATGCACT 61.479 55.000 19.57 0.00 42.05 4.40
3385 3490 1.084290 CGTATACACGCGCATGCAC 60.084 57.895 19.57 7.15 42.05 4.57
3386 3491 3.304613 CGTATACACGCGCATGCA 58.695 55.556 19.57 0.00 42.05 3.96
3395 3500 2.190325 ACAGAAGCGCTCGTATACAC 57.810 50.000 12.06 0.00 0.00 2.90
3396 3501 2.921121 CAAACAGAAGCGCTCGTATACA 59.079 45.455 12.06 0.00 0.00 2.29
3397 3502 2.921754 ACAAACAGAAGCGCTCGTATAC 59.078 45.455 12.06 0.00 0.00 1.47
3398 3503 3.226346 ACAAACAGAAGCGCTCGTATA 57.774 42.857 12.06 0.00 0.00 1.47
3399 3504 2.080286 ACAAACAGAAGCGCTCGTAT 57.920 45.000 12.06 0.00 0.00 3.06
3400 3505 2.030540 AGTACAAACAGAAGCGCTCGTA 60.031 45.455 12.06 1.12 0.00 3.43
3401 3506 1.137513 GTACAAACAGAAGCGCTCGT 58.862 50.000 12.06 5.71 0.00 4.18
3402 3507 1.125021 CAGTACAAACAGAAGCGCTCG 59.875 52.381 12.06 4.93 0.00 5.03
3403 3508 2.404215 TCAGTACAAACAGAAGCGCTC 58.596 47.619 12.06 4.30 0.00 5.03
3404 3509 2.526304 TCAGTACAAACAGAAGCGCT 57.474 45.000 2.64 2.64 0.00 5.92
3405 3510 2.480419 ACATCAGTACAAACAGAAGCGC 59.520 45.455 0.00 0.00 0.00 5.92
3406 3511 4.732285 AACATCAGTACAAACAGAAGCG 57.268 40.909 0.00 0.00 0.00 4.68
3407 3512 8.850454 TTTTTAACATCAGTACAAACAGAAGC 57.150 30.769 0.00 0.00 0.00 3.86
3431 3536 1.884235 ACTGCGCTAGACTGCTTTTT 58.116 45.000 9.73 0.00 0.00 1.94
3432 3537 2.028930 AGTACTGCGCTAGACTGCTTTT 60.029 45.455 9.73 0.00 0.00 2.27
3433 3538 1.546476 AGTACTGCGCTAGACTGCTTT 59.454 47.619 9.73 0.00 0.00 3.51
3434 3539 1.178276 AGTACTGCGCTAGACTGCTT 58.822 50.000 9.73 0.00 0.00 3.91
3435 3540 1.178276 AAGTACTGCGCTAGACTGCT 58.822 50.000 9.73 0.00 0.00 4.24
3436 3541 1.921230 GAAAGTACTGCGCTAGACTGC 59.079 52.381 9.73 1.71 0.00 4.40
3437 3542 2.094700 TGGAAAGTACTGCGCTAGACTG 60.095 50.000 9.73 0.00 0.00 3.51
3438 3543 2.168496 TGGAAAGTACTGCGCTAGACT 58.832 47.619 9.73 5.85 0.00 3.24
3439 3544 2.649331 TGGAAAGTACTGCGCTAGAC 57.351 50.000 9.73 3.24 0.00 2.59
3440 3545 3.671008 TTTGGAAAGTACTGCGCTAGA 57.329 42.857 9.73 0.00 0.00 2.43
3441 3546 4.024387 TGTTTTTGGAAAGTACTGCGCTAG 60.024 41.667 9.73 7.16 0.00 3.42
3442 3547 3.878103 TGTTTTTGGAAAGTACTGCGCTA 59.122 39.130 9.73 0.00 0.00 4.26
3443 3548 2.685897 TGTTTTTGGAAAGTACTGCGCT 59.314 40.909 9.73 0.00 0.00 5.92
3444 3549 3.073144 TGTTTTTGGAAAGTACTGCGC 57.927 42.857 0.00 0.00 0.00 6.09
3445 3550 5.277825 TCAATGTTTTTGGAAAGTACTGCG 58.722 37.500 0.00 0.00 0.00 5.18
3446 3551 5.175673 GCTCAATGTTTTTGGAAAGTACTGC 59.824 40.000 0.00 0.00 0.00 4.40
3447 3552 6.418819 CAGCTCAATGTTTTTGGAAAGTACTG 59.581 38.462 0.00 0.00 0.00 2.74
3448 3553 6.096846 ACAGCTCAATGTTTTTGGAAAGTACT 59.903 34.615 0.00 0.00 0.00 2.73
3449 3554 6.273071 ACAGCTCAATGTTTTTGGAAAGTAC 58.727 36.000 0.00 0.00 0.00 2.73
3450 3555 6.463995 ACAGCTCAATGTTTTTGGAAAGTA 57.536 33.333 0.00 0.00 0.00 2.24
3451 3556 5.343307 ACAGCTCAATGTTTTTGGAAAGT 57.657 34.783 0.00 0.00 0.00 2.66
3461 3566 5.827797 TCTGGAGTTAAAACAGCTCAATGTT 59.172 36.000 0.00 0.00 45.18 2.71
3462 3567 5.376625 TCTGGAGTTAAAACAGCTCAATGT 58.623 37.500 0.00 0.00 36.26 2.71
3463 3568 5.947228 TCTGGAGTTAAAACAGCTCAATG 57.053 39.130 0.00 0.00 36.26 2.82
3464 3569 6.515696 GCTTTCTGGAGTTAAAACAGCTCAAT 60.516 38.462 0.00 0.00 36.26 2.57
3465 3570 5.221048 GCTTTCTGGAGTTAAAACAGCTCAA 60.221 40.000 0.00 0.00 36.26 3.02
3466 3571 4.275936 GCTTTCTGGAGTTAAAACAGCTCA 59.724 41.667 0.00 0.00 36.26 4.26
3467 3572 4.320567 GGCTTTCTGGAGTTAAAACAGCTC 60.321 45.833 0.00 0.00 33.91 4.09
3468 3573 3.570125 GGCTTTCTGGAGTTAAAACAGCT 59.430 43.478 0.00 0.00 32.42 4.24
3469 3574 3.317993 TGGCTTTCTGGAGTTAAAACAGC 59.682 43.478 0.00 0.00 32.42 4.40
3470 3575 5.712152 ATGGCTTTCTGGAGTTAAAACAG 57.288 39.130 0.00 0.00 0.00 3.16
3471 3576 5.010617 GGAATGGCTTTCTGGAGTTAAAACA 59.989 40.000 12.23 0.00 34.56 2.83
3472 3577 5.010617 TGGAATGGCTTTCTGGAGTTAAAAC 59.989 40.000 12.23 0.00 34.56 2.43
3473 3578 5.144100 TGGAATGGCTTTCTGGAGTTAAAA 58.856 37.500 12.23 0.00 34.56 1.52
3474 3579 4.735369 TGGAATGGCTTTCTGGAGTTAAA 58.265 39.130 12.23 0.00 34.56 1.52
3475 3580 4.380843 TGGAATGGCTTTCTGGAGTTAA 57.619 40.909 12.23 0.00 34.56 2.01
3476 3581 4.380843 TTGGAATGGCTTTCTGGAGTTA 57.619 40.909 12.23 0.00 34.56 2.24
3477 3582 2.978156 TGGAATGGCTTTCTGGAGTT 57.022 45.000 12.23 0.00 34.56 3.01
3478 3583 2.978156 TTGGAATGGCTTTCTGGAGT 57.022 45.000 12.23 0.00 34.56 3.85
3479 3584 3.512724 ACAATTGGAATGGCTTTCTGGAG 59.487 43.478 10.83 3.35 34.56 3.86
3480 3585 3.509442 ACAATTGGAATGGCTTTCTGGA 58.491 40.909 10.83 0.88 34.56 3.86
3481 3586 3.512724 AGACAATTGGAATGGCTTTCTGG 59.487 43.478 10.83 2.17 29.77 3.86
3482 3587 4.796038 AGACAATTGGAATGGCTTTCTG 57.204 40.909 10.83 5.96 29.77 3.02
3483 3588 5.819991 TCTAGACAATTGGAATGGCTTTCT 58.180 37.500 10.83 2.73 37.36 2.52
3484 3589 6.515272 TTCTAGACAATTGGAATGGCTTTC 57.485 37.500 10.83 4.63 37.36 2.62
3485 3590 7.486407 AATTCTAGACAATTGGAATGGCTTT 57.514 32.000 10.83 0.00 37.36 3.51
3486 3591 7.286316 CCTAATTCTAGACAATTGGAATGGCTT 59.714 37.037 10.83 0.00 37.36 4.35
3487 3592 6.774656 CCTAATTCTAGACAATTGGAATGGCT 59.225 38.462 10.83 0.00 40.03 4.75
3488 3593 6.547510 ACCTAATTCTAGACAATTGGAATGGC 59.452 38.462 10.83 0.00 0.00 4.40
3489 3594 8.408601 CAACCTAATTCTAGACAATTGGAATGG 58.591 37.037 10.83 9.40 0.00 3.16
3490 3595 9.177608 TCAACCTAATTCTAGACAATTGGAATG 57.822 33.333 10.83 1.01 0.00 2.67
3491 3596 9.401058 CTCAACCTAATTCTAGACAATTGGAAT 57.599 33.333 10.83 6.15 0.00 3.01
3492 3597 8.383175 ACTCAACCTAATTCTAGACAATTGGAA 58.617 33.333 10.83 3.92 0.00 3.53
3493 3598 7.918076 ACTCAACCTAATTCTAGACAATTGGA 58.082 34.615 10.83 0.00 0.00 3.53
3494 3599 8.567285 AACTCAACCTAATTCTAGACAATTGG 57.433 34.615 10.83 0.00 0.00 3.16
3503 3608 9.162764 GCTGTCATAAAACTCAACCTAATTCTA 57.837 33.333 0.00 0.00 0.00 2.10
3504 3609 7.885399 AGCTGTCATAAAACTCAACCTAATTCT 59.115 33.333 0.00 0.00 0.00 2.40
3505 3610 8.045176 AGCTGTCATAAAACTCAACCTAATTC 57.955 34.615 0.00 0.00 0.00 2.17
3506 3611 9.167311 CTAGCTGTCATAAAACTCAACCTAATT 57.833 33.333 0.00 0.00 0.00 1.40
3507 3612 8.322091 ACTAGCTGTCATAAAACTCAACCTAAT 58.678 33.333 0.00 0.00 0.00 1.73
3508 3613 7.676947 ACTAGCTGTCATAAAACTCAACCTAA 58.323 34.615 0.00 0.00 0.00 2.69
3509 3614 7.241042 ACTAGCTGTCATAAAACTCAACCTA 57.759 36.000 0.00 0.00 0.00 3.08
3510 3615 6.115448 ACTAGCTGTCATAAAACTCAACCT 57.885 37.500 0.00 0.00 0.00 3.50
3511 3616 6.803154 AACTAGCTGTCATAAAACTCAACC 57.197 37.500 0.00 0.00 0.00 3.77
3516 3621 9.110502 GCCTATTTAACTAGCTGTCATAAAACT 57.889 33.333 0.00 0.00 0.00 2.66
3517 3622 8.889717 TGCCTATTTAACTAGCTGTCATAAAAC 58.110 33.333 0.00 0.00 0.00 2.43
3518 3623 8.889717 GTGCCTATTTAACTAGCTGTCATAAAA 58.110 33.333 0.00 0.00 0.00 1.52
3519 3624 8.044309 TGTGCCTATTTAACTAGCTGTCATAAA 58.956 33.333 0.00 0.00 0.00 1.40
3520 3625 7.494625 GTGTGCCTATTTAACTAGCTGTCATAA 59.505 37.037 0.00 0.00 0.00 1.90
3521 3626 6.984474 GTGTGCCTATTTAACTAGCTGTCATA 59.016 38.462 0.00 0.00 0.00 2.15
3522 3627 5.817816 GTGTGCCTATTTAACTAGCTGTCAT 59.182 40.000 0.00 0.00 0.00 3.06
3523 3628 5.175859 GTGTGCCTATTTAACTAGCTGTCA 58.824 41.667 0.00 0.00 0.00 3.58
3524 3629 4.571176 GGTGTGCCTATTTAACTAGCTGTC 59.429 45.833 0.00 0.00 0.00 3.51
3525 3630 4.225267 AGGTGTGCCTATTTAACTAGCTGT 59.775 41.667 0.00 0.00 44.90 4.40
3526 3631 4.770795 AGGTGTGCCTATTTAACTAGCTG 58.229 43.478 0.00 0.00 44.90 4.24
3527 3632 5.897824 TCTAGGTGTGCCTATTTAACTAGCT 59.102 40.000 0.00 0.00 45.61 3.32
3528 3633 5.984323 GTCTAGGTGTGCCTATTTAACTAGC 59.016 44.000 0.00 0.00 45.61 3.42
3529 3634 7.349412 AGTCTAGGTGTGCCTATTTAACTAG 57.651 40.000 0.00 0.00 45.61 2.57
3530 3635 7.729124 AAGTCTAGGTGTGCCTATTTAACTA 57.271 36.000 0.00 0.00 45.61 2.24
3531 3636 6.622427 AAGTCTAGGTGTGCCTATTTAACT 57.378 37.500 0.00 0.00 45.61 2.24
3532 3637 6.760298 GGTAAGTCTAGGTGTGCCTATTTAAC 59.240 42.308 0.00 0.00 45.61 2.01
3533 3638 6.670902 AGGTAAGTCTAGGTGTGCCTATTTAA 59.329 38.462 0.00 0.00 45.61 1.52
3534 3639 6.200114 AGGTAAGTCTAGGTGTGCCTATTTA 58.800 40.000 0.00 0.00 45.61 1.40
3535 3640 5.030820 AGGTAAGTCTAGGTGTGCCTATTT 58.969 41.667 0.00 0.00 45.61 1.40
3536 3641 4.621769 AGGTAAGTCTAGGTGTGCCTATT 58.378 43.478 0.00 0.00 45.61 1.73
3537 3642 4.267341 AGGTAAGTCTAGGTGTGCCTAT 57.733 45.455 0.00 0.00 45.61 2.57
3538 3643 3.752359 AGGTAAGTCTAGGTGTGCCTA 57.248 47.619 0.00 0.00 44.90 3.93
3539 3644 4.510567 ACTTAGGTAAGTCTAGGTGTGCCT 60.511 45.833 0.00 0.00 42.52 4.75
3540 3645 3.768215 ACTTAGGTAAGTCTAGGTGTGCC 59.232 47.826 0.00 0.00 42.52 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.