Multiple sequence alignment - TraesCS3D01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G136100 chr3D 100.000 3135 0 0 1 3135 94762916 94759782 0.000000e+00 5790
1 TraesCS3D01G136100 chr3D 87.500 544 57 4 1597 2129 94718091 94718634 4.440000e-173 617
2 TraesCS3D01G136100 chr3D 86.288 423 43 8 1164 1585 94717580 94717988 2.220000e-121 446
3 TraesCS3D01G136100 chr7D 97.216 862 22 2 2276 3135 414294389 414295250 0.000000e+00 1458
4 TraesCS3D01G136100 chr7D 97.823 827 16 2 2311 3135 611015359 611016185 0.000000e+00 1426
5 TraesCS3D01G136100 chr6D 97.206 859 22 2 2279 3135 383600437 383599579 0.000000e+00 1452
6 TraesCS3D01G136100 chr5D 97.206 859 22 2 2279 3135 352237245 352236387 0.000000e+00 1452
7 TraesCS3D01G136100 chr5D 96.857 859 24 3 2280 3135 167755529 167754671 0.000000e+00 1434
8 TraesCS3D01G136100 chr5D 96.145 856 29 2 2281 3135 212862650 212863502 0.000000e+00 1395
9 TraesCS3D01G136100 chr4D 96.853 858 23 4 2280 3135 348413060 348412205 0.000000e+00 1432
10 TraesCS3D01G136100 chr4D 96.037 858 31 3 2280 3135 381422447 381423303 0.000000e+00 1393
11 TraesCS3D01G136100 chr1D 96.163 860 27 6 2281 3135 134441146 134442004 0.000000e+00 1400
12 TraesCS3D01G136100 chr3B 87.744 1126 89 25 482 1581 145370389 145369287 0.000000e+00 1269
13 TraesCS3D01G136100 chr3B 92.836 670 40 5 1564 2231 145368430 145367767 0.000000e+00 965
14 TraesCS3D01G136100 chr3B 85.827 254 17 6 718 965 145502062 145501822 5.190000e-63 252
15 TraesCS3D01G136100 chr3A 90.945 508 46 0 1579 2086 549268460 549267953 0.000000e+00 684
16 TraesCS3D01G136100 chr3A 89.781 548 28 10 1044 1588 549269021 549268499 0.000000e+00 676
17 TraesCS3D01G136100 chr3A 88.641 449 25 12 640 1073 549269457 549269020 9.960000e-145 523
18 TraesCS3D01G136100 chr3A 86.842 114 8 3 520 633 549269635 549269529 1.530000e-23 121
19 TraesCS3D01G136100 chr2D 84.685 111 15 1 55 163 506945094 506944984 3.310000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G136100 chr3D 94759782 94762916 3134 True 5790.0 5790 100.00000 1 3135 1 chr3D.!!$R1 3134
1 TraesCS3D01G136100 chr3D 94717580 94718634 1054 False 531.5 617 86.89400 1164 2129 2 chr3D.!!$F1 965
2 TraesCS3D01G136100 chr7D 414294389 414295250 861 False 1458.0 1458 97.21600 2276 3135 1 chr7D.!!$F1 859
3 TraesCS3D01G136100 chr7D 611015359 611016185 826 False 1426.0 1426 97.82300 2311 3135 1 chr7D.!!$F2 824
4 TraesCS3D01G136100 chr6D 383599579 383600437 858 True 1452.0 1452 97.20600 2279 3135 1 chr6D.!!$R1 856
5 TraesCS3D01G136100 chr5D 352236387 352237245 858 True 1452.0 1452 97.20600 2279 3135 1 chr5D.!!$R2 856
6 TraesCS3D01G136100 chr5D 167754671 167755529 858 True 1434.0 1434 96.85700 2280 3135 1 chr5D.!!$R1 855
7 TraesCS3D01G136100 chr5D 212862650 212863502 852 False 1395.0 1395 96.14500 2281 3135 1 chr5D.!!$F1 854
8 TraesCS3D01G136100 chr4D 348412205 348413060 855 True 1432.0 1432 96.85300 2280 3135 1 chr4D.!!$R1 855
9 TraesCS3D01G136100 chr4D 381422447 381423303 856 False 1393.0 1393 96.03700 2280 3135 1 chr4D.!!$F1 855
10 TraesCS3D01G136100 chr1D 134441146 134442004 858 False 1400.0 1400 96.16300 2281 3135 1 chr1D.!!$F1 854
11 TraesCS3D01G136100 chr3B 145367767 145370389 2622 True 1117.0 1269 90.29000 482 2231 2 chr3B.!!$R2 1749
12 TraesCS3D01G136100 chr3A 549267953 549269635 1682 True 501.0 684 89.05225 520 2086 4 chr3A.!!$R1 1566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 973 0.028505 CGATGCCATCTTCTTTGCCG 59.971 55.0 2.75 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 3414 0.629596 TCCCTCTGATCGGGTACACT 59.37 55.0 0.62 0.0 42.56 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.577246 GCTAGGCAGCGGACGAGG 62.577 72.222 1.53 0.00 38.22 4.63
22 23 3.141488 CTAGGCAGCGGACGAGGT 61.141 66.667 0.00 0.00 0.00 3.85
23 24 2.678934 TAGGCAGCGGACGAGGTT 60.679 61.111 0.00 0.00 0.00 3.50
24 25 2.890847 CTAGGCAGCGGACGAGGTTG 62.891 65.000 0.00 0.00 0.00 3.77
25 26 4.373116 GGCAGCGGACGAGGTTGA 62.373 66.667 0.00 0.00 0.00 3.18
26 27 2.357034 GCAGCGGACGAGGTTGAA 60.357 61.111 0.00 0.00 0.00 2.69
27 28 2.383527 GCAGCGGACGAGGTTGAAG 61.384 63.158 0.00 0.00 0.00 3.02
28 29 1.738099 CAGCGGACGAGGTTGAAGG 60.738 63.158 0.00 0.00 0.00 3.46
29 30 2.434359 GCGGACGAGGTTGAAGGG 60.434 66.667 0.00 0.00 0.00 3.95
30 31 2.939261 GCGGACGAGGTTGAAGGGA 61.939 63.158 0.00 0.00 0.00 4.20
31 32 1.898154 CGGACGAGGTTGAAGGGAT 59.102 57.895 0.00 0.00 0.00 3.85
32 33 0.179108 CGGACGAGGTTGAAGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
33 34 0.179108 GGACGAGGTTGAAGGGATCG 60.179 60.000 0.00 0.00 39.22 3.69
34 35 0.815734 GACGAGGTTGAAGGGATCGA 59.184 55.000 0.00 0.00 37.16 3.59
35 36 1.409427 GACGAGGTTGAAGGGATCGAT 59.591 52.381 0.00 0.00 37.16 3.59
36 37 1.409427 ACGAGGTTGAAGGGATCGATC 59.591 52.381 17.36 17.36 37.16 3.69
37 38 1.269831 CGAGGTTGAAGGGATCGATCC 60.270 57.143 32.57 32.57 46.41 3.36
45 46 3.322466 GGATCGATCCCGGGCCAT 61.322 66.667 30.80 4.55 41.20 4.40
46 47 2.046892 GATCGATCCCGGGCCATG 60.047 66.667 18.49 5.46 36.24 3.66
47 48 4.335647 ATCGATCCCGGGCCATGC 62.336 66.667 18.49 1.37 36.24 4.06
49 50 4.996434 CGATCCCGGGCCATGCTC 62.996 72.222 18.49 4.32 0.00 4.26
50 51 3.564218 GATCCCGGGCCATGCTCT 61.564 66.667 18.49 0.00 0.00 4.09
51 52 3.839353 GATCCCGGGCCATGCTCTG 62.839 68.421 18.49 0.00 0.00 3.35
59 60 2.872557 CCATGCTCTGGCGTTGTG 59.127 61.111 0.00 0.00 42.25 3.33
60 61 2.177531 CATGCTCTGGCGTTGTGC 59.822 61.111 0.00 0.00 42.25 4.57
75 76 4.635769 TGCCTAAGCATGAACCGG 57.364 55.556 0.00 0.00 46.52 5.28
76 77 1.748879 TGCCTAAGCATGAACCGGC 60.749 57.895 0.00 3.06 46.52 6.13
77 78 1.748879 GCCTAAGCATGAACCGGCA 60.749 57.895 0.00 0.00 39.53 5.69
78 79 1.312371 GCCTAAGCATGAACCGGCAA 61.312 55.000 0.00 0.00 39.53 4.52
79 80 0.451783 CCTAAGCATGAACCGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
99 100 6.991485 CAACGTTTGCAGTTCATCTAAATT 57.009 33.333 0.00 0.00 0.00 1.82
100 101 7.026568 CAACGTTTGCAGTTCATCTAAATTC 57.973 36.000 0.00 0.00 0.00 2.17
101 102 6.312399 ACGTTTGCAGTTCATCTAAATTCA 57.688 33.333 0.00 0.00 0.00 2.57
102 103 6.913170 ACGTTTGCAGTTCATCTAAATTCAT 58.087 32.000 0.00 0.00 0.00 2.57
103 104 7.023575 ACGTTTGCAGTTCATCTAAATTCATC 58.976 34.615 0.00 0.00 0.00 2.92
104 105 7.022979 CGTTTGCAGTTCATCTAAATTCATCA 58.977 34.615 0.00 0.00 0.00 3.07
105 106 7.699391 CGTTTGCAGTTCATCTAAATTCATCAT 59.301 33.333 0.00 0.00 0.00 2.45
106 107 8.804743 GTTTGCAGTTCATCTAAATTCATCATG 58.195 33.333 0.00 0.00 0.00 3.07
107 108 7.868906 TGCAGTTCATCTAAATTCATCATGA 57.131 32.000 0.00 0.00 0.00 3.07
108 109 8.283699 TGCAGTTCATCTAAATTCATCATGAA 57.716 30.769 1.59 1.59 41.09 2.57
109 110 8.741841 TGCAGTTCATCTAAATTCATCATGAAA 58.258 29.630 3.63 0.00 40.12 2.69
110 111 9.745880 GCAGTTCATCTAAATTCATCATGAAAT 57.254 29.630 3.63 0.00 40.12 2.17
112 113 9.745880 AGTTCATCTAAATTCATCATGAAATGC 57.254 29.630 3.63 0.00 46.21 3.56
113 114 8.688184 GTTCATCTAAATTCATCATGAAATGCG 58.312 33.333 3.63 0.00 46.21 4.73
114 115 7.933396 TCATCTAAATTCATCATGAAATGCGT 58.067 30.769 3.63 0.00 46.21 5.24
115 116 7.858879 TCATCTAAATTCATCATGAAATGCGTG 59.141 33.333 3.63 0.57 46.21 5.34
116 117 7.319142 TCTAAATTCATCATGAAATGCGTGA 57.681 32.000 3.63 0.00 46.21 4.35
121 122 2.177001 TCATGAAATGCGTGATTGCG 57.823 45.000 0.00 0.00 46.21 4.85
129 130 4.422506 CGTGATTGCGCAACTCAC 57.577 55.556 32.75 32.75 36.72 3.51
130 131 1.569003 CGTGATTGCGCAACTCACA 59.431 52.632 36.34 27.20 39.36 3.58
131 132 0.166597 CGTGATTGCGCAACTCACAT 59.833 50.000 36.34 22.26 39.36 3.21
132 133 1.609932 GTGATTGCGCAACTCACATG 58.390 50.000 34.93 0.00 39.24 3.21
133 134 0.109643 TGATTGCGCAACTCACATGC 60.110 50.000 27.64 7.92 40.41 4.06
134 135 0.109643 GATTGCGCAACTCACATGCA 60.110 50.000 27.64 0.00 44.01 3.96
135 136 1.732308 TTGCGCAACTCACATGCAA 59.268 47.368 21.02 0.00 44.01 4.08
136 137 0.594540 TTGCGCAACTCACATGCAAC 60.595 50.000 21.02 0.00 44.01 4.17
137 138 1.283793 GCGCAACTCACATGCAACT 59.716 52.632 0.30 0.00 44.01 3.16
138 139 0.727122 GCGCAACTCACATGCAACTC 60.727 55.000 0.30 0.00 44.01 3.01
139 140 0.110056 CGCAACTCACATGCAACTCC 60.110 55.000 0.00 0.00 44.01 3.85
140 141 0.953727 GCAACTCACATGCAACTCCA 59.046 50.000 0.00 0.00 43.29 3.86
141 142 1.337703 GCAACTCACATGCAACTCCAA 59.662 47.619 0.00 0.00 43.29 3.53
142 143 2.223782 GCAACTCACATGCAACTCCAAA 60.224 45.455 0.00 0.00 43.29 3.28
143 144 3.737663 GCAACTCACATGCAACTCCAAAA 60.738 43.478 0.00 0.00 43.29 2.44
144 145 4.624015 CAACTCACATGCAACTCCAAAAT 58.376 39.130 0.00 0.00 0.00 1.82
145 146 4.510038 ACTCACATGCAACTCCAAAATC 57.490 40.909 0.00 0.00 0.00 2.17
146 147 3.890756 ACTCACATGCAACTCCAAAATCA 59.109 39.130 0.00 0.00 0.00 2.57
147 148 4.525487 ACTCACATGCAACTCCAAAATCAT 59.475 37.500 0.00 0.00 0.00 2.45
148 149 5.011329 ACTCACATGCAACTCCAAAATCATT 59.989 36.000 0.00 0.00 0.00 2.57
149 150 5.856156 TCACATGCAACTCCAAAATCATTT 58.144 33.333 0.00 0.00 0.00 2.32
150 151 5.697178 TCACATGCAACTCCAAAATCATTTG 59.303 36.000 0.00 0.00 44.50 2.32
163 164 6.711579 CAAAATCATTTGGTTGAGCATATGC 58.288 36.000 20.36 20.36 41.81 3.14
164 165 5.601583 AATCATTTGGTTGAGCATATGCA 57.398 34.783 28.62 7.07 45.16 3.96
165 166 5.601583 ATCATTTGGTTGAGCATATGCAA 57.398 34.783 28.62 14.26 45.16 4.08
166 167 5.402997 TCATTTGGTTGAGCATATGCAAA 57.597 34.783 28.62 19.11 45.16 3.68
167 168 5.412640 TCATTTGGTTGAGCATATGCAAAG 58.587 37.500 28.62 10.00 45.16 2.77
168 169 4.870123 TTTGGTTGAGCATATGCAAAGT 57.130 36.364 28.62 8.75 45.16 2.66
169 170 4.439305 TTGGTTGAGCATATGCAAAGTC 57.561 40.909 28.62 17.52 45.16 3.01
170 171 3.419943 TGGTTGAGCATATGCAAAGTCA 58.580 40.909 28.62 19.82 45.16 3.41
171 172 4.018490 TGGTTGAGCATATGCAAAGTCAT 58.982 39.130 28.62 6.77 45.16 3.06
172 173 5.192176 TGGTTGAGCATATGCAAAGTCATA 58.808 37.500 28.62 11.47 45.16 2.15
173 174 5.829391 TGGTTGAGCATATGCAAAGTCATAT 59.171 36.000 28.62 5.21 45.16 1.78
174 175 6.997476 TGGTTGAGCATATGCAAAGTCATATA 59.003 34.615 28.62 6.91 45.16 0.86
175 176 7.666804 TGGTTGAGCATATGCAAAGTCATATAT 59.333 33.333 28.62 3.88 45.16 0.86
176 177 8.517878 GGTTGAGCATATGCAAAGTCATATATT 58.482 33.333 28.62 3.66 45.16 1.28
177 178 9.338291 GTTGAGCATATGCAAAGTCATATATTG 57.662 33.333 28.62 0.00 45.16 1.90
178 179 8.851541 TGAGCATATGCAAAGTCATATATTGA 57.148 30.769 28.62 0.00 45.16 2.57
197 198 8.818141 ATATTGACAACTAATAGATGTGTCGG 57.182 34.615 7.93 0.00 31.03 4.79
198 199 4.430007 TGACAACTAATAGATGTGTCGGC 58.570 43.478 7.93 0.00 31.03 5.54
199 200 4.159693 TGACAACTAATAGATGTGTCGGCT 59.840 41.667 7.93 0.00 31.03 5.52
200 201 5.358725 TGACAACTAATAGATGTGTCGGCTA 59.641 40.000 7.93 0.00 31.03 3.93
201 202 6.040504 TGACAACTAATAGATGTGTCGGCTAT 59.959 38.462 7.93 0.00 31.03 2.97
202 203 6.817184 ACAACTAATAGATGTGTCGGCTATT 58.183 36.000 2.28 0.00 38.16 1.73
203 204 7.272978 ACAACTAATAGATGTGTCGGCTATTT 58.727 34.615 2.28 0.00 36.52 1.40
204 205 7.769044 ACAACTAATAGATGTGTCGGCTATTTT 59.231 33.333 2.28 0.00 36.52 1.82
205 206 8.612619 CAACTAATAGATGTGTCGGCTATTTTT 58.387 33.333 0.00 0.00 36.52 1.94
206 207 8.366671 ACTAATAGATGTGTCGGCTATTTTTC 57.633 34.615 0.00 0.00 36.52 2.29
207 208 8.204836 ACTAATAGATGTGTCGGCTATTTTTCT 58.795 33.333 0.00 0.00 36.52 2.52
208 209 7.865706 AATAGATGTGTCGGCTATTTTTCTT 57.134 32.000 0.00 0.00 32.50 2.52
209 210 7.865706 ATAGATGTGTCGGCTATTTTTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
210 211 6.183309 AGATGTGTCGGCTATTTTTCTTTC 57.817 37.500 0.00 0.00 0.00 2.62
211 212 5.705441 AGATGTGTCGGCTATTTTTCTTTCA 59.295 36.000 0.00 0.00 0.00 2.69
212 213 5.759506 TGTGTCGGCTATTTTTCTTTCAA 57.240 34.783 0.00 0.00 0.00 2.69
213 214 6.325919 TGTGTCGGCTATTTTTCTTTCAAT 57.674 33.333 0.00 0.00 0.00 2.57
214 215 7.441890 TGTGTCGGCTATTTTTCTTTCAATA 57.558 32.000 0.00 0.00 0.00 1.90
215 216 8.050778 TGTGTCGGCTATTTTTCTTTCAATAT 57.949 30.769 0.00 0.00 0.00 1.28
216 217 9.168451 TGTGTCGGCTATTTTTCTTTCAATATA 57.832 29.630 0.00 0.00 0.00 0.86
308 309 7.977789 ACATTGTGATGTAATAACTGTGTGA 57.022 32.000 0.00 0.00 44.51 3.58
309 310 8.565896 ACATTGTGATGTAATAACTGTGTGAT 57.434 30.769 0.00 0.00 44.51 3.06
310 311 9.013229 ACATTGTGATGTAATAACTGTGTGATT 57.987 29.630 0.00 0.00 44.51 2.57
311 312 9.844790 CATTGTGATGTAATAACTGTGTGATTT 57.155 29.630 0.00 0.00 0.00 2.17
322 323 9.908152 AATAACTGTGTGATTTAAACTTTAGGC 57.092 29.630 0.00 0.00 0.00 3.93
323 324 6.952773 ACTGTGTGATTTAAACTTTAGGCA 57.047 33.333 0.00 0.00 0.00 4.75
324 325 7.341445 ACTGTGTGATTTAAACTTTAGGCAA 57.659 32.000 0.00 0.00 0.00 4.52
325 326 7.951591 ACTGTGTGATTTAAACTTTAGGCAAT 58.048 30.769 0.00 0.00 0.00 3.56
326 327 7.867403 ACTGTGTGATTTAAACTTTAGGCAATG 59.133 33.333 0.00 0.00 0.00 2.82
327 328 6.644592 TGTGTGATTTAAACTTTAGGCAATGC 59.355 34.615 0.00 0.00 0.00 3.56
328 329 6.868339 GTGTGATTTAAACTTTAGGCAATGCT 59.132 34.615 4.82 0.00 0.00 3.79
329 330 7.384932 GTGTGATTTAAACTTTAGGCAATGCTT 59.615 33.333 4.82 0.00 0.00 3.91
330 331 8.580720 TGTGATTTAAACTTTAGGCAATGCTTA 58.419 29.630 4.82 0.00 0.00 3.09
331 332 9.076596 GTGATTTAAACTTTAGGCAATGCTTAG 57.923 33.333 4.82 0.00 0.00 2.18
332 333 9.019656 TGATTTAAACTTTAGGCAATGCTTAGA 57.980 29.630 4.82 0.00 0.00 2.10
336 337 9.638239 TTAAACTTTAGGCAATGCTTAGATTTG 57.362 29.630 4.82 0.00 0.00 2.32
337 338 6.840780 ACTTTAGGCAATGCTTAGATTTGT 57.159 33.333 4.82 0.00 0.00 2.83
338 339 7.938140 ACTTTAGGCAATGCTTAGATTTGTA 57.062 32.000 4.82 0.00 0.00 2.41
339 340 8.525290 ACTTTAGGCAATGCTTAGATTTGTAT 57.475 30.769 4.82 0.00 0.00 2.29
340 341 8.408601 ACTTTAGGCAATGCTTAGATTTGTATG 58.591 33.333 4.82 0.00 0.00 2.39
341 342 8.518430 TTTAGGCAATGCTTAGATTTGTATGA 57.482 30.769 4.82 0.00 0.00 2.15
342 343 8.518430 TTAGGCAATGCTTAGATTTGTATGAA 57.482 30.769 4.82 0.00 0.00 2.57
343 344 7.408756 AGGCAATGCTTAGATTTGTATGAAA 57.591 32.000 4.82 0.00 0.00 2.69
344 345 7.839907 AGGCAATGCTTAGATTTGTATGAAAA 58.160 30.769 4.82 0.00 0.00 2.29
345 346 8.313292 AGGCAATGCTTAGATTTGTATGAAAAA 58.687 29.630 4.82 0.00 0.00 1.94
368 369 8.896320 AAAACTATGTAATATGACCGCATACA 57.104 30.769 0.00 0.00 39.65 2.29
369 370 8.896320 AAACTATGTAATATGACCGCATACAA 57.104 30.769 0.00 0.00 39.65 2.41
370 371 8.534333 AACTATGTAATATGACCGCATACAAG 57.466 34.615 0.00 0.00 39.65 3.16
371 372 5.862924 ATGTAATATGACCGCATACAAGC 57.137 39.130 0.00 0.00 39.65 4.01
372 373 4.062293 TGTAATATGACCGCATACAAGCC 58.938 43.478 0.00 0.00 39.65 4.35
373 374 1.795768 ATATGACCGCATACAAGCCG 58.204 50.000 0.00 0.00 39.65 5.52
374 375 0.878523 TATGACCGCATACAAGCCGC 60.879 55.000 0.00 0.00 35.94 6.53
375 376 2.817834 GACCGCATACAAGCCGCA 60.818 61.111 0.00 0.00 0.00 5.69
376 377 3.095898 GACCGCATACAAGCCGCAC 62.096 63.158 0.00 0.00 0.00 5.34
377 378 4.222589 CCGCATACAAGCCGCACG 62.223 66.667 0.00 0.00 0.00 5.34
378 379 3.185365 CGCATACAAGCCGCACGA 61.185 61.111 0.00 0.00 0.00 4.35
379 380 2.735677 CGCATACAAGCCGCACGAA 61.736 57.895 0.00 0.00 0.00 3.85
380 381 1.721487 GCATACAAGCCGCACGAAT 59.279 52.632 0.00 0.00 0.00 3.34
381 382 0.589729 GCATACAAGCCGCACGAATG 60.590 55.000 0.00 0.00 0.00 2.67
382 383 1.006086 CATACAAGCCGCACGAATGA 58.994 50.000 0.00 0.00 0.00 2.57
383 384 1.396648 CATACAAGCCGCACGAATGAA 59.603 47.619 0.00 0.00 0.00 2.57
384 385 1.514003 TACAAGCCGCACGAATGAAA 58.486 45.000 0.00 0.00 0.00 2.69
385 386 0.881118 ACAAGCCGCACGAATGAAAT 59.119 45.000 0.00 0.00 0.00 2.17
386 387 1.261989 CAAGCCGCACGAATGAAATG 58.738 50.000 0.00 0.00 0.00 2.32
387 388 0.881118 AAGCCGCACGAATGAAATGT 59.119 45.000 0.00 0.00 0.00 2.71
388 389 0.168788 AGCCGCACGAATGAAATGTG 59.831 50.000 0.00 0.00 36.70 3.21
389 390 0.109781 GCCGCACGAATGAAATGTGT 60.110 50.000 0.00 0.00 36.04 3.72
390 391 1.665735 GCCGCACGAATGAAATGTGTT 60.666 47.619 0.00 0.00 36.04 3.32
391 392 2.413502 GCCGCACGAATGAAATGTGTTA 60.414 45.455 0.00 0.00 36.04 2.41
392 393 3.416277 CCGCACGAATGAAATGTGTTAG 58.584 45.455 0.00 0.00 36.04 2.34
393 394 3.120338 CCGCACGAATGAAATGTGTTAGT 60.120 43.478 0.00 0.00 36.04 2.24
394 395 4.463209 CGCACGAATGAAATGTGTTAGTT 58.537 39.130 0.00 0.00 36.04 2.24
395 396 4.318071 CGCACGAATGAAATGTGTTAGTTG 59.682 41.667 0.00 0.00 36.04 3.16
396 397 4.616802 GCACGAATGAAATGTGTTAGTTGG 59.383 41.667 0.00 0.00 36.04 3.77
397 398 5.757886 CACGAATGAAATGTGTTAGTTGGT 58.242 37.500 0.00 0.00 0.00 3.67
398 399 6.205784 CACGAATGAAATGTGTTAGTTGGTT 58.794 36.000 0.00 0.00 0.00 3.67
399 400 6.142161 CACGAATGAAATGTGTTAGTTGGTTG 59.858 38.462 0.00 0.00 0.00 3.77
400 401 5.629020 CGAATGAAATGTGTTAGTTGGTTGG 59.371 40.000 0.00 0.00 0.00 3.77
401 402 6.514212 CGAATGAAATGTGTTAGTTGGTTGGA 60.514 38.462 0.00 0.00 0.00 3.53
402 403 5.508200 TGAAATGTGTTAGTTGGTTGGAC 57.492 39.130 0.00 0.00 0.00 4.02
403 404 4.035792 TGAAATGTGTTAGTTGGTTGGACG 59.964 41.667 0.00 0.00 0.00 4.79
404 405 1.301423 TGTGTTAGTTGGTTGGACGC 58.699 50.000 0.00 0.00 0.00 5.19
405 406 1.134340 TGTGTTAGTTGGTTGGACGCT 60.134 47.619 0.00 0.00 0.00 5.07
406 407 1.263217 GTGTTAGTTGGTTGGACGCTG 59.737 52.381 0.00 0.00 0.00 5.18
407 408 0.872388 GTTAGTTGGTTGGACGCTGG 59.128 55.000 0.00 0.00 0.00 4.85
408 409 0.887387 TTAGTTGGTTGGACGCTGGC 60.887 55.000 0.00 0.00 0.00 4.85
409 410 2.741486 TAGTTGGTTGGACGCTGGCC 62.741 60.000 0.00 0.00 0.00 5.36
410 411 4.196778 TTGGTTGGACGCTGGCCA 62.197 61.111 4.71 4.71 0.00 5.36
411 412 3.723097 TTGGTTGGACGCTGGCCAA 62.723 57.895 7.01 11.20 42.81 4.52
412 413 2.676471 GGTTGGACGCTGGCCAAT 60.676 61.111 17.03 0.00 46.21 3.16
413 414 1.377987 GGTTGGACGCTGGCCAATA 60.378 57.895 17.03 0.00 46.21 1.90
414 415 0.963355 GGTTGGACGCTGGCCAATAA 60.963 55.000 17.03 0.00 46.21 1.40
415 416 0.885196 GTTGGACGCTGGCCAATAAA 59.115 50.000 17.03 0.00 46.21 1.40
416 417 1.271102 GTTGGACGCTGGCCAATAAAA 59.729 47.619 17.03 0.00 46.21 1.52
417 418 1.846007 TGGACGCTGGCCAATAAAAT 58.154 45.000 7.01 0.00 31.13 1.82
418 419 3.006112 TGGACGCTGGCCAATAAAATA 57.994 42.857 7.01 0.00 31.13 1.40
419 420 3.357203 TGGACGCTGGCCAATAAAATAA 58.643 40.909 7.01 0.00 31.13 1.40
420 421 3.764434 TGGACGCTGGCCAATAAAATAAA 59.236 39.130 7.01 0.00 31.13 1.40
421 422 4.220821 TGGACGCTGGCCAATAAAATAAAA 59.779 37.500 7.01 0.00 31.13 1.52
422 423 5.172205 GGACGCTGGCCAATAAAATAAAAA 58.828 37.500 7.01 0.00 0.00 1.94
438 439 3.763671 AAAAAGGGCCAGACGCAG 58.236 55.556 6.18 0.00 40.31 5.18
450 451 3.760035 ACGCAGTCCCTACGGCTG 61.760 66.667 0.00 0.00 43.69 4.85
451 452 3.449227 CGCAGTCCCTACGGCTGA 61.449 66.667 0.00 0.00 43.69 4.26
452 453 2.184579 GCAGTCCCTACGGCTGAC 59.815 66.667 0.00 0.00 42.71 3.51
453 454 2.893398 CAGTCCCTACGGCTGACC 59.107 66.667 0.00 0.00 36.14 4.02
454 455 2.363925 AGTCCCTACGGCTGACCC 60.364 66.667 0.00 0.00 0.00 4.46
455 456 2.682494 GTCCCTACGGCTGACCCA 60.682 66.667 0.00 0.00 0.00 4.51
456 457 2.120940 TCCCTACGGCTGACCCAA 59.879 61.111 0.00 0.00 0.00 4.12
457 458 1.536907 TCCCTACGGCTGACCCAAA 60.537 57.895 0.00 0.00 0.00 3.28
458 459 1.376812 CCCTACGGCTGACCCAAAC 60.377 63.158 0.00 0.00 0.00 2.93
459 460 1.740296 CCTACGGCTGACCCAAACG 60.740 63.158 0.00 0.00 0.00 3.60
460 461 1.290955 CTACGGCTGACCCAAACGA 59.709 57.895 0.00 0.00 0.00 3.85
461 462 0.320073 CTACGGCTGACCCAAACGAA 60.320 55.000 0.00 0.00 0.00 3.85
462 463 0.322322 TACGGCTGACCCAAACGAAT 59.678 50.000 0.00 0.00 0.00 3.34
463 464 0.322322 ACGGCTGACCCAAACGAATA 59.678 50.000 0.00 0.00 0.00 1.75
464 465 1.270947 ACGGCTGACCCAAACGAATAA 60.271 47.619 0.00 0.00 0.00 1.40
465 466 1.807742 CGGCTGACCCAAACGAATAAA 59.192 47.619 0.00 0.00 0.00 1.40
466 467 2.226912 CGGCTGACCCAAACGAATAAAA 59.773 45.455 0.00 0.00 0.00 1.52
467 468 3.304794 CGGCTGACCCAAACGAATAAAAA 60.305 43.478 0.00 0.00 0.00 1.94
468 469 3.985279 GGCTGACCCAAACGAATAAAAAC 59.015 43.478 0.00 0.00 0.00 2.43
469 470 4.500035 GGCTGACCCAAACGAATAAAAACA 60.500 41.667 0.00 0.00 0.00 2.83
470 471 4.679654 GCTGACCCAAACGAATAAAAACAG 59.320 41.667 0.00 0.00 0.00 3.16
471 472 5.506649 GCTGACCCAAACGAATAAAAACAGA 60.507 40.000 0.00 0.00 0.00 3.41
472 473 5.823353 TGACCCAAACGAATAAAAACAGAC 58.177 37.500 0.00 0.00 0.00 3.51
473 474 5.591067 TGACCCAAACGAATAAAAACAGACT 59.409 36.000 0.00 0.00 0.00 3.24
474 475 6.766944 TGACCCAAACGAATAAAAACAGACTA 59.233 34.615 0.00 0.00 0.00 2.59
475 476 7.282675 TGACCCAAACGAATAAAAACAGACTAA 59.717 33.333 0.00 0.00 0.00 2.24
476 477 7.998580 ACCCAAACGAATAAAAACAGACTAAA 58.001 30.769 0.00 0.00 0.00 1.85
477 478 8.468399 ACCCAAACGAATAAAAACAGACTAAAA 58.532 29.630 0.00 0.00 0.00 1.52
478 479 8.964150 CCCAAACGAATAAAAACAGACTAAAAG 58.036 33.333 0.00 0.00 0.00 2.27
479 480 8.476925 CCAAACGAATAAAAACAGACTAAAAGC 58.523 33.333 0.00 0.00 0.00 3.51
480 481 8.476925 CAAACGAATAAAAACAGACTAAAAGCC 58.523 33.333 0.00 0.00 0.00 4.35
493 494 0.887933 AAAAGCCGGTTCATCGCAAT 59.112 45.000 1.90 0.00 0.00 3.56
495 496 1.967319 AAGCCGGTTCATCGCAATAT 58.033 45.000 1.90 0.00 0.00 1.28
497 498 1.070758 AGCCGGTTCATCGCAATATCT 59.929 47.619 1.90 0.00 0.00 1.98
500 501 3.307242 GCCGGTTCATCGCAATATCTATC 59.693 47.826 1.90 0.00 0.00 2.08
502 503 5.678871 GCCGGTTCATCGCAATATCTATCTA 60.679 44.000 1.90 0.00 0.00 1.98
512 513 5.521735 CGCAATATCTATCTAGCACCCATTC 59.478 44.000 0.00 0.00 0.00 2.67
515 516 7.389232 CAATATCTATCTAGCACCCATTCACA 58.611 38.462 0.00 0.00 0.00 3.58
556 557 1.148310 CGCATCCGTGAAGTTTCTGT 58.852 50.000 0.00 0.00 0.00 3.41
557 558 1.136252 CGCATCCGTGAAGTTTCTGTG 60.136 52.381 0.00 0.00 0.00 3.66
587 588 5.826737 TGAAAACGAAATGGGTACAGGTTTA 59.173 36.000 0.00 0.00 0.00 2.01
594 595 2.328319 TGGGTACAGGTTTACGTCCTT 58.672 47.619 0.00 0.00 32.37 3.36
649 748 6.412214 ACATAGTTGGTTCTACACAATACCC 58.588 40.000 0.00 0.00 0.00 3.69
710 810 2.148768 CTTACCCGCGAAAAAGAAGGT 58.851 47.619 8.23 6.11 0.00 3.50
844 946 0.869730 TTTTCTCGGCCGCTGTTAAC 59.130 50.000 23.51 0.00 0.00 2.01
871 973 0.028505 CGATGCCATCTTCTTTGCCG 59.971 55.000 2.75 0.00 0.00 5.69
951 1062 4.848357 AGGTCATCAAATTCCGTCTTCAT 58.152 39.130 0.00 0.00 0.00 2.57
972 1083 1.017701 CCTTTACCACGACGAAGCCC 61.018 60.000 0.00 0.00 0.00 5.19
974 1085 0.320073 TTTACCACGACGAAGCCCTG 60.320 55.000 0.00 0.00 0.00 4.45
1011 1122 2.187958 AGCCATCCCGCAGCTATATAA 58.812 47.619 0.00 0.00 34.38 0.98
1018 1129 2.679837 CCCGCAGCTATATAAATGCCAG 59.320 50.000 11.36 5.44 35.22 4.85
1030 1141 0.323178 AATGCCAGGACCTGCTTGAG 60.323 55.000 16.72 3.08 0.00 3.02
1073 1189 3.983741 AGTTCAGACTTCAGAGAAACCG 58.016 45.455 0.00 0.00 29.87 4.44
1075 1191 3.924918 TCAGACTTCAGAGAAACCGAG 57.075 47.619 0.00 0.00 0.00 4.63
1076 1192 2.029828 TCAGACTTCAGAGAAACCGAGC 60.030 50.000 0.00 0.00 0.00 5.03
1090 1233 2.283821 GAGCAAACCATGGGGGCA 60.284 61.111 18.09 0.00 42.05 5.36
1149 1292 4.429212 CGGTGATGGCCGTGTCGA 62.429 66.667 0.00 0.00 46.11 4.20
1265 1408 2.577059 GGGAGAATGTCGCCGACA 59.423 61.111 23.51 23.51 46.90 4.35
1337 1480 8.722394 GGAAAACAAAGGTATACTTCTTCTGAG 58.278 37.037 2.25 0.00 38.85 3.35
1352 1497 9.107177 ACTTCTTCTGAGCATTGAACTAATATG 57.893 33.333 0.00 0.00 0.00 1.78
1406 1551 4.523943 TCAACATGGCTTATGCTTCAAACT 59.476 37.500 0.00 0.00 40.59 2.66
1407 1552 5.010922 TCAACATGGCTTATGCTTCAAACTT 59.989 36.000 0.00 0.00 40.59 2.66
1408 1553 5.473066 ACATGGCTTATGCTTCAAACTTT 57.527 34.783 0.00 0.00 40.59 2.66
1409 1554 5.857268 ACATGGCTTATGCTTCAAACTTTT 58.143 33.333 0.00 0.00 40.59 2.27
1410 1555 6.290605 ACATGGCTTATGCTTCAAACTTTTT 58.709 32.000 0.00 0.00 40.59 1.94
1654 2812 2.577059 GGAATCGAGACGGTGGCA 59.423 61.111 0.00 0.00 0.00 4.92
1666 2824 2.186826 GGTGGCACTGCAGAACGTT 61.187 57.895 23.35 0.00 0.00 3.99
1669 2827 1.029408 TGGCACTGCAGAACGTTTGT 61.029 50.000 23.35 0.00 0.00 2.83
1711 2869 1.142748 GGAGCTGTCCCATCTCACG 59.857 63.158 0.00 0.00 36.76 4.35
1748 2906 6.591750 ACGAGGTCTTCTTTGAGATAAAGA 57.408 37.500 0.00 0.00 34.73 2.52
1764 2922 2.029666 GATCGATGACCCGGCCTG 59.970 66.667 0.54 0.00 0.00 4.85
1939 3097 6.700960 CAGAGATCTCCATGTTTGAGTATGAC 59.299 42.308 19.30 0.00 0.00 3.06
1986 3144 3.548770 TCATCAAGGGCATCAAGATCAC 58.451 45.455 0.00 0.00 0.00 3.06
1990 3148 1.152673 GGGCATCAAGATCACCCCC 60.153 63.158 0.00 0.00 34.23 5.40
2037 3195 1.609555 TGTTACCAACCATCGTTTGCC 59.390 47.619 0.00 0.00 0.00 4.52
2094 3263 7.275888 TGCATGGGAATAATATTTCACTGTC 57.724 36.000 0.00 0.00 30.08 3.51
2158 3327 9.521503 GAAGAAAAAGTTGCACTAGAAAGATTT 57.478 29.630 0.00 0.00 0.00 2.17
2160 3329 9.305925 AGAAAAAGTTGCACTAGAAAGATTTTG 57.694 29.630 0.00 0.00 0.00 2.44
2179 3348 8.526147 AGATTTTGATATCACTTTCCTTGGTTG 58.474 33.333 4.48 0.00 0.00 3.77
2180 3349 5.643379 TTGATATCACTTTCCTTGGTTGC 57.357 39.130 4.48 0.00 0.00 4.17
2181 3350 4.016444 TGATATCACTTTCCTTGGTTGCC 58.984 43.478 0.00 0.00 0.00 4.52
2202 3371 5.127194 TGCCACTATAAACCTCTGAGTACTG 59.873 44.000 0.00 0.00 0.00 2.74
2213 3382 3.556999 TCTGAGTACTGGCTATCTGACC 58.443 50.000 0.00 0.00 0.00 4.02
2214 3383 3.203263 TCTGAGTACTGGCTATCTGACCT 59.797 47.826 0.00 0.00 0.00 3.85
2218 3387 5.955959 TGAGTACTGGCTATCTGACCTAAAA 59.044 40.000 0.00 0.00 0.00 1.52
2238 3407 4.957684 AAAATACCACTCCCTCCTATCG 57.042 45.455 0.00 0.00 0.00 2.92
2239 3408 2.606751 ATACCACTCCCTCCTATCGG 57.393 55.000 0.00 0.00 0.00 4.18
2240 3409 1.526315 TACCACTCCCTCCTATCGGA 58.474 55.000 0.00 0.00 37.82 4.55
2241 3410 0.635009 ACCACTCCCTCCTATCGGAA 59.365 55.000 0.00 0.00 39.29 4.30
2242 3411 1.007963 ACCACTCCCTCCTATCGGAAA 59.992 52.381 0.00 0.00 39.29 3.13
2243 3412 2.116238 CCACTCCCTCCTATCGGAAAA 58.884 52.381 0.00 0.00 39.29 2.29
2244 3413 2.504175 CCACTCCCTCCTATCGGAAAAA 59.496 50.000 0.00 0.00 39.29 1.94
2262 3431 3.611766 AAAAGTGTACCCGATCAGAGG 57.388 47.619 0.00 0.00 0.00 3.69
2273 3442 4.881019 CCGATCAGAGGGAGTATCATTT 57.119 45.455 0.00 0.00 36.25 2.32
2274 3443 5.984695 CCGATCAGAGGGAGTATCATTTA 57.015 43.478 0.00 0.00 36.25 1.40
2275 3444 6.537453 CCGATCAGAGGGAGTATCATTTAT 57.463 41.667 0.00 0.00 36.25 1.40
2276 3445 6.940739 CCGATCAGAGGGAGTATCATTTATT 58.059 40.000 0.00 0.00 36.25 1.40
2277 3446 7.038659 CCGATCAGAGGGAGTATCATTTATTC 58.961 42.308 0.00 0.00 36.25 1.75
2294 3463 8.767085 TCATTTATTCAACGAAAAGTCTAACGT 58.233 29.630 0.00 0.00 40.64 3.99
2350 3519 1.956629 ATCCGTTGCCGTCCAGTAGG 61.957 60.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.577246 CCTCGTCCGCTGCCTAGC 62.577 72.222 0.00 0.00 46.62 3.42
5 6 2.711922 AACCTCGTCCGCTGCCTAG 61.712 63.158 0.00 0.00 0.00 3.02
6 7 2.678934 AACCTCGTCCGCTGCCTA 60.679 61.111 0.00 0.00 0.00 3.93
7 8 4.379243 CAACCTCGTCCGCTGCCT 62.379 66.667 0.00 0.00 0.00 4.75
8 9 3.876589 TTCAACCTCGTCCGCTGCC 62.877 63.158 0.00 0.00 0.00 4.85
9 10 2.357034 TTCAACCTCGTCCGCTGC 60.357 61.111 0.00 0.00 0.00 5.25
10 11 1.738099 CCTTCAACCTCGTCCGCTG 60.738 63.158 0.00 0.00 0.00 5.18
11 12 2.657237 CCTTCAACCTCGTCCGCT 59.343 61.111 0.00 0.00 0.00 5.52
12 13 2.240162 ATCCCTTCAACCTCGTCCGC 62.240 60.000 0.00 0.00 0.00 5.54
13 14 0.179108 GATCCCTTCAACCTCGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
14 15 0.179108 CGATCCCTTCAACCTCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
15 16 0.815734 TCGATCCCTTCAACCTCGTC 59.184 55.000 0.00 0.00 0.00 4.20
16 17 1.409427 GATCGATCCCTTCAACCTCGT 59.591 52.381 14.76 0.00 0.00 4.18
17 18 1.269831 GGATCGATCCCTTCAACCTCG 60.270 57.143 30.80 0.00 41.20 4.63
18 19 2.535012 GGATCGATCCCTTCAACCTC 57.465 55.000 30.80 4.30 41.20 3.85
28 29 3.322466 ATGGCCCGGGATCGATCC 61.322 66.667 32.57 32.57 46.41 3.36
29 30 2.046892 CATGGCCCGGGATCGATC 60.047 66.667 29.31 17.36 39.00 3.69
30 31 4.335647 GCATGGCCCGGGATCGAT 62.336 66.667 29.31 7.32 39.00 3.59
32 33 4.996434 GAGCATGGCCCGGGATCG 62.996 72.222 29.31 10.26 0.00 3.69
33 34 3.564218 AGAGCATGGCCCGGGATC 61.564 66.667 29.31 16.56 0.00 3.36
34 35 3.882326 CAGAGCATGGCCCGGGAT 61.882 66.667 29.31 6.81 0.00 3.85
43 44 2.177531 GCACAACGCCAGAGCATG 59.822 61.111 0.00 0.00 39.83 4.06
59 60 1.312371 TTGCCGGTTCATGCTTAGGC 61.312 55.000 1.90 12.93 44.38 3.93
60 61 0.451783 GTTGCCGGTTCATGCTTAGG 59.548 55.000 1.90 0.00 0.00 2.69
61 62 0.096976 CGTTGCCGGTTCATGCTTAG 59.903 55.000 1.90 0.00 0.00 2.18
62 63 0.604243 ACGTTGCCGGTTCATGCTTA 60.604 50.000 1.90 0.00 38.78 3.09
63 64 1.452145 AACGTTGCCGGTTCATGCTT 61.452 50.000 1.90 0.00 38.78 3.91
64 65 1.452145 AAACGTTGCCGGTTCATGCT 61.452 50.000 0.00 0.00 40.81 3.79
65 66 1.007849 AAACGTTGCCGGTTCATGC 60.008 52.632 0.00 0.00 40.81 4.06
66 67 2.794941 CAAACGTTGCCGGTTCATG 58.205 52.632 0.00 0.00 40.81 3.07
76 77 6.636447 TGAATTTAGATGAACTGCAAACGTTG 59.364 34.615 0.00 0.00 0.00 4.10
77 78 6.734137 TGAATTTAGATGAACTGCAAACGTT 58.266 32.000 0.00 0.00 0.00 3.99
78 79 6.312399 TGAATTTAGATGAACTGCAAACGT 57.688 33.333 0.00 0.00 0.00 3.99
79 80 7.022979 TGATGAATTTAGATGAACTGCAAACG 58.977 34.615 0.00 0.00 0.00 3.60
80 81 8.804743 CATGATGAATTTAGATGAACTGCAAAC 58.195 33.333 0.00 0.00 0.00 2.93
81 82 8.741841 TCATGATGAATTTAGATGAACTGCAAA 58.258 29.630 0.00 0.00 0.00 3.68
82 83 8.283699 TCATGATGAATTTAGATGAACTGCAA 57.716 30.769 0.00 0.00 0.00 4.08
83 84 7.868906 TCATGATGAATTTAGATGAACTGCA 57.131 32.000 0.00 0.00 0.00 4.41
84 85 9.745880 ATTTCATGATGAATTTAGATGAACTGC 57.254 29.630 8.90 0.00 36.11 4.40
86 87 9.745880 GCATTTCATGATGAATTTAGATGAACT 57.254 29.630 16.72 1.58 36.11 3.01
87 88 8.688184 CGCATTTCATGATGAATTTAGATGAAC 58.312 33.333 16.72 3.86 36.11 3.18
88 89 8.407832 ACGCATTTCATGATGAATTTAGATGAA 58.592 29.630 16.72 0.00 36.11 2.57
89 90 7.858879 CACGCATTTCATGATGAATTTAGATGA 59.141 33.333 16.72 0.00 36.11 2.92
90 91 7.858879 TCACGCATTTCATGATGAATTTAGATG 59.141 33.333 8.90 10.05 36.11 2.90
91 92 7.933396 TCACGCATTTCATGATGAATTTAGAT 58.067 30.769 8.90 0.00 36.11 1.98
92 93 7.319142 TCACGCATTTCATGATGAATTTAGA 57.681 32.000 8.90 0.83 36.11 2.10
93 94 8.476925 CAATCACGCATTTCATGATGAATTTAG 58.523 33.333 8.90 4.50 36.11 1.85
94 95 7.043258 GCAATCACGCATTTCATGATGAATTTA 60.043 33.333 8.90 0.00 36.11 1.40
95 96 6.237996 GCAATCACGCATTTCATGATGAATTT 60.238 34.615 8.90 0.00 36.11 1.82
96 97 5.233476 GCAATCACGCATTTCATGATGAATT 59.767 36.000 8.90 2.63 36.11 2.17
97 98 4.743151 GCAATCACGCATTTCATGATGAAT 59.257 37.500 8.90 0.00 36.11 2.57
98 99 4.106909 GCAATCACGCATTTCATGATGAA 58.893 39.130 3.29 3.29 33.37 2.57
99 100 3.697982 GCAATCACGCATTTCATGATGA 58.302 40.909 0.00 0.00 33.37 2.92
100 101 2.466205 CGCAATCACGCATTTCATGATG 59.534 45.455 0.00 0.00 33.37 3.07
101 102 2.723209 CGCAATCACGCATTTCATGAT 58.277 42.857 0.00 0.00 34.52 2.45
102 103 2.177001 CGCAATCACGCATTTCATGA 57.823 45.000 0.00 0.00 0.00 3.07
112 113 0.166597 ATGTGAGTTGCGCAATCACG 59.833 50.000 34.20 0.00 45.00 4.35
113 114 1.609932 CATGTGAGTTGCGCAATCAC 58.390 50.000 34.18 34.18 42.90 3.06
114 115 0.109643 GCATGTGAGTTGCGCAATCA 60.110 50.000 27.79 24.65 40.98 2.57
115 116 0.109643 TGCATGTGAGTTGCGCAATC 60.110 50.000 27.79 22.53 43.10 2.67
116 117 0.314618 TTGCATGTGAGTTGCGCAAT 59.685 45.000 27.79 15.17 43.10 3.56
117 118 0.594540 GTTGCATGTGAGTTGCGCAA 60.595 50.000 21.02 21.02 43.10 4.85
118 119 1.008652 GTTGCATGTGAGTTGCGCA 60.009 52.632 5.66 5.66 43.10 6.09
119 120 0.727122 GAGTTGCATGTGAGTTGCGC 60.727 55.000 0.00 0.00 43.10 6.09
120 121 0.110056 GGAGTTGCATGTGAGTTGCG 60.110 55.000 0.00 0.00 43.10 4.85
121 122 0.953727 TGGAGTTGCATGTGAGTTGC 59.046 50.000 0.00 0.00 40.55 4.17
122 123 3.713858 TTTGGAGTTGCATGTGAGTTG 57.286 42.857 0.00 0.00 0.00 3.16
123 124 4.341806 TGATTTTGGAGTTGCATGTGAGTT 59.658 37.500 0.00 0.00 0.00 3.01
124 125 3.890756 TGATTTTGGAGTTGCATGTGAGT 59.109 39.130 0.00 0.00 0.00 3.41
125 126 4.508461 TGATTTTGGAGTTGCATGTGAG 57.492 40.909 0.00 0.00 0.00 3.51
126 127 5.471556 AATGATTTTGGAGTTGCATGTGA 57.528 34.783 0.00 0.00 0.00 3.58
127 128 5.922546 CAAATGATTTTGGAGTTGCATGTG 58.077 37.500 0.00 0.00 38.85 3.21
139 140 6.314152 TGCATATGCTCAACCAAATGATTTTG 59.686 34.615 27.13 0.00 40.79 2.44
140 141 6.408035 TGCATATGCTCAACCAAATGATTTT 58.592 32.000 27.13 0.00 42.66 1.82
141 142 5.979993 TGCATATGCTCAACCAAATGATTT 58.020 33.333 27.13 0.00 42.66 2.17
142 143 5.601583 TGCATATGCTCAACCAAATGATT 57.398 34.783 27.13 0.00 42.66 2.57
143 144 5.601583 TTGCATATGCTCAACCAAATGAT 57.398 34.783 27.13 0.00 42.66 2.45
144 145 5.047164 ACTTTGCATATGCTCAACCAAATGA 60.047 36.000 27.13 0.47 42.66 2.57
145 146 5.172934 ACTTTGCATATGCTCAACCAAATG 58.827 37.500 27.13 15.15 42.66 2.32
146 147 5.047164 TGACTTTGCATATGCTCAACCAAAT 60.047 36.000 27.13 9.12 42.66 2.32
147 148 4.280425 TGACTTTGCATATGCTCAACCAAA 59.720 37.500 27.13 16.63 42.66 3.28
148 149 3.825585 TGACTTTGCATATGCTCAACCAA 59.174 39.130 27.13 10.26 42.66 3.67
149 150 3.419943 TGACTTTGCATATGCTCAACCA 58.580 40.909 27.13 16.44 42.66 3.67
150 151 4.644103 ATGACTTTGCATATGCTCAACC 57.356 40.909 27.13 14.30 42.66 3.77
151 152 9.338291 CAATATATGACTTTGCATATGCTCAAC 57.662 33.333 27.13 15.03 40.62 3.18
152 153 9.287373 TCAATATATGACTTTGCATATGCTCAA 57.713 29.630 27.13 18.29 40.62 3.02
153 154 8.851541 TCAATATATGACTTTGCATATGCTCA 57.148 30.769 27.13 21.58 40.62 4.26
171 172 9.908152 CCGACACATCTATTAGTTGTCAATATA 57.092 33.333 16.17 0.00 0.00 0.86
172 173 7.385205 GCCGACACATCTATTAGTTGTCAATAT 59.615 37.037 16.17 0.00 0.00 1.28
173 174 6.700081 GCCGACACATCTATTAGTTGTCAATA 59.300 38.462 16.17 0.00 0.00 1.90
174 175 5.523916 GCCGACACATCTATTAGTTGTCAAT 59.476 40.000 16.17 4.35 0.00 2.57
175 176 4.868171 GCCGACACATCTATTAGTTGTCAA 59.132 41.667 16.17 0.00 0.00 3.18
176 177 4.159693 AGCCGACACATCTATTAGTTGTCA 59.840 41.667 16.17 0.00 0.00 3.58
177 178 4.683832 AGCCGACACATCTATTAGTTGTC 58.316 43.478 4.73 8.04 0.00 3.18
178 179 4.737855 AGCCGACACATCTATTAGTTGT 57.262 40.909 2.22 2.22 0.00 3.32
179 180 7.715265 AAATAGCCGACACATCTATTAGTTG 57.285 36.000 1.06 1.06 33.35 3.16
180 181 8.732746 AAAAATAGCCGACACATCTATTAGTT 57.267 30.769 0.00 0.00 33.35 2.24
181 182 8.204836 AGAAAAATAGCCGACACATCTATTAGT 58.795 33.333 0.00 0.00 33.35 2.24
182 183 8.594881 AGAAAAATAGCCGACACATCTATTAG 57.405 34.615 0.00 0.00 33.35 1.73
183 184 8.958119 AAGAAAAATAGCCGACACATCTATTA 57.042 30.769 0.00 0.00 33.35 0.98
184 185 7.865706 AAGAAAAATAGCCGACACATCTATT 57.134 32.000 0.00 0.00 35.28 1.73
185 186 7.552687 TGAAAGAAAAATAGCCGACACATCTAT 59.447 33.333 0.00 0.00 0.00 1.98
186 187 6.876789 TGAAAGAAAAATAGCCGACACATCTA 59.123 34.615 0.00 0.00 0.00 1.98
187 188 5.705441 TGAAAGAAAAATAGCCGACACATCT 59.295 36.000 0.00 0.00 0.00 2.90
188 189 5.938322 TGAAAGAAAAATAGCCGACACATC 58.062 37.500 0.00 0.00 0.00 3.06
189 190 5.957842 TGAAAGAAAAATAGCCGACACAT 57.042 34.783 0.00 0.00 0.00 3.21
190 191 5.759506 TTGAAAGAAAAATAGCCGACACA 57.240 34.783 0.00 0.00 0.00 3.72
282 283 9.495572 TCACACAGTTATTACATCACAATGTTA 57.504 29.630 0.00 0.00 43.74 2.41
283 284 8.389779 TCACACAGTTATTACATCACAATGTT 57.610 30.769 0.00 0.00 43.74 2.71
285 286 9.844790 AAATCACACAGTTATTACATCACAATG 57.155 29.630 0.00 0.00 38.93 2.82
296 297 9.908152 GCCTAAAGTTTAAATCACACAGTTATT 57.092 29.630 0.00 0.00 0.00 1.40
297 298 9.073475 TGCCTAAAGTTTAAATCACACAGTTAT 57.927 29.630 0.00 0.00 0.00 1.89
298 299 8.453238 TGCCTAAAGTTTAAATCACACAGTTA 57.547 30.769 0.00 0.00 0.00 2.24
299 300 7.341445 TGCCTAAAGTTTAAATCACACAGTT 57.659 32.000 0.00 0.00 0.00 3.16
300 301 6.952773 TGCCTAAAGTTTAAATCACACAGT 57.047 33.333 0.00 0.00 0.00 3.55
301 302 7.148755 GCATTGCCTAAAGTTTAAATCACACAG 60.149 37.037 0.00 0.00 0.00 3.66
302 303 6.644592 GCATTGCCTAAAGTTTAAATCACACA 59.355 34.615 0.00 0.00 0.00 3.72
303 304 6.868339 AGCATTGCCTAAAGTTTAAATCACAC 59.132 34.615 4.70 0.00 0.00 3.82
304 305 6.991938 AGCATTGCCTAAAGTTTAAATCACA 58.008 32.000 4.70 0.00 0.00 3.58
305 306 7.889589 AAGCATTGCCTAAAGTTTAAATCAC 57.110 32.000 4.70 0.00 0.00 3.06
306 307 9.019656 TCTAAGCATTGCCTAAAGTTTAAATCA 57.980 29.630 4.70 0.00 0.00 2.57
310 311 9.638239 CAAATCTAAGCATTGCCTAAAGTTTAA 57.362 29.630 4.70 0.00 0.00 1.52
311 312 8.802267 ACAAATCTAAGCATTGCCTAAAGTTTA 58.198 29.630 4.70 0.00 0.00 2.01
312 313 7.670364 ACAAATCTAAGCATTGCCTAAAGTTT 58.330 30.769 4.70 0.00 0.00 2.66
313 314 7.232118 ACAAATCTAAGCATTGCCTAAAGTT 57.768 32.000 4.70 0.00 0.00 2.66
314 315 6.840780 ACAAATCTAAGCATTGCCTAAAGT 57.159 33.333 4.70 0.00 0.00 2.66
315 316 8.623903 TCATACAAATCTAAGCATTGCCTAAAG 58.376 33.333 4.70 0.00 0.00 1.85
316 317 8.518430 TCATACAAATCTAAGCATTGCCTAAA 57.482 30.769 4.70 0.00 0.00 1.85
317 318 8.518430 TTCATACAAATCTAAGCATTGCCTAA 57.482 30.769 4.70 0.00 0.00 2.69
318 319 8.518430 TTTCATACAAATCTAAGCATTGCCTA 57.482 30.769 4.70 0.00 0.00 3.93
319 320 7.408756 TTTCATACAAATCTAAGCATTGCCT 57.591 32.000 4.70 0.00 0.00 4.75
320 321 8.477984 TTTTTCATACAAATCTAAGCATTGCC 57.522 30.769 4.70 0.00 0.00 4.52
342 343 9.332502 TGTATGCGGTCATATTACATAGTTTTT 57.667 29.630 0.00 0.00 37.49 1.94
343 344 8.896320 TGTATGCGGTCATATTACATAGTTTT 57.104 30.769 0.00 0.00 37.49 2.43
344 345 8.896320 TTGTATGCGGTCATATTACATAGTTT 57.104 30.769 0.00 0.00 37.49 2.66
345 346 7.117812 GCTTGTATGCGGTCATATTACATAGTT 59.882 37.037 0.00 0.00 37.49 2.24
346 347 6.590292 GCTTGTATGCGGTCATATTACATAGT 59.410 38.462 0.00 0.00 37.49 2.12
347 348 6.036083 GGCTTGTATGCGGTCATATTACATAG 59.964 42.308 0.00 0.00 37.49 2.23
348 349 5.872617 GGCTTGTATGCGGTCATATTACATA 59.127 40.000 0.00 0.00 37.49 2.29
349 350 4.695455 GGCTTGTATGCGGTCATATTACAT 59.305 41.667 0.00 0.00 37.49 2.29
350 351 4.062293 GGCTTGTATGCGGTCATATTACA 58.938 43.478 0.00 0.00 37.49 2.41
351 352 3.122948 CGGCTTGTATGCGGTCATATTAC 59.877 47.826 0.00 0.00 37.49 1.89
352 353 3.322369 CGGCTTGTATGCGGTCATATTA 58.678 45.455 0.00 0.00 37.49 0.98
353 354 2.143122 CGGCTTGTATGCGGTCATATT 58.857 47.619 0.00 0.00 37.49 1.28
354 355 1.795768 CGGCTTGTATGCGGTCATAT 58.204 50.000 0.00 0.00 37.49 1.78
355 356 0.878523 GCGGCTTGTATGCGGTCATA 60.879 55.000 0.00 0.00 35.98 2.15
356 357 2.180204 GCGGCTTGTATGCGGTCAT 61.180 57.895 0.00 0.00 35.98 3.06
357 358 2.817834 GCGGCTTGTATGCGGTCA 60.818 61.111 0.00 0.00 35.98 4.02
358 359 2.817834 TGCGGCTTGTATGCGGTC 60.818 61.111 0.00 0.00 35.98 4.79
359 360 3.124921 GTGCGGCTTGTATGCGGT 61.125 61.111 0.00 0.00 35.98 5.68
360 361 4.222589 CGTGCGGCTTGTATGCGG 62.223 66.667 0.00 0.00 36.54 5.69
361 362 2.035617 ATTCGTGCGGCTTGTATGCG 62.036 55.000 0.00 0.00 0.00 4.73
362 363 0.589729 CATTCGTGCGGCTTGTATGC 60.590 55.000 0.00 0.00 0.00 3.14
363 364 1.006086 TCATTCGTGCGGCTTGTATG 58.994 50.000 0.00 3.67 0.00 2.39
364 365 1.732941 TTCATTCGTGCGGCTTGTAT 58.267 45.000 0.00 0.00 0.00 2.29
365 366 1.514003 TTTCATTCGTGCGGCTTGTA 58.486 45.000 0.00 0.00 0.00 2.41
366 367 0.881118 ATTTCATTCGTGCGGCTTGT 59.119 45.000 0.00 0.00 0.00 3.16
367 368 1.261989 CATTTCATTCGTGCGGCTTG 58.738 50.000 0.00 0.00 0.00 4.01
368 369 0.881118 ACATTTCATTCGTGCGGCTT 59.119 45.000 0.00 0.00 0.00 4.35
369 370 0.168788 CACATTTCATTCGTGCGGCT 59.831 50.000 0.00 0.00 0.00 5.52
370 371 0.109781 ACACATTTCATTCGTGCGGC 60.110 50.000 0.00 0.00 33.89 6.53
371 372 2.330231 AACACATTTCATTCGTGCGG 57.670 45.000 0.00 0.00 33.89 5.69
372 373 4.065423 ACTAACACATTTCATTCGTGCG 57.935 40.909 0.00 0.00 33.89 5.34
373 374 4.616802 CCAACTAACACATTTCATTCGTGC 59.383 41.667 0.00 0.00 33.89 5.34
374 375 5.757886 ACCAACTAACACATTTCATTCGTG 58.242 37.500 0.00 0.00 36.70 4.35
375 376 6.205784 CAACCAACTAACACATTTCATTCGT 58.794 36.000 0.00 0.00 0.00 3.85
376 377 5.629020 CCAACCAACTAACACATTTCATTCG 59.371 40.000 0.00 0.00 0.00 3.34
377 378 6.640907 GTCCAACCAACTAACACATTTCATTC 59.359 38.462 0.00 0.00 0.00 2.67
378 379 6.512297 GTCCAACCAACTAACACATTTCATT 58.488 36.000 0.00 0.00 0.00 2.57
379 380 5.278266 CGTCCAACCAACTAACACATTTCAT 60.278 40.000 0.00 0.00 0.00 2.57
380 381 4.035792 CGTCCAACCAACTAACACATTTCA 59.964 41.667 0.00 0.00 0.00 2.69
381 382 4.533222 CGTCCAACCAACTAACACATTTC 58.467 43.478 0.00 0.00 0.00 2.17
382 383 3.243267 GCGTCCAACCAACTAACACATTT 60.243 43.478 0.00 0.00 0.00 2.32
383 384 2.292292 GCGTCCAACCAACTAACACATT 59.708 45.455 0.00 0.00 0.00 2.71
384 385 1.877443 GCGTCCAACCAACTAACACAT 59.123 47.619 0.00 0.00 0.00 3.21
385 386 1.134340 AGCGTCCAACCAACTAACACA 60.134 47.619 0.00 0.00 0.00 3.72
386 387 1.263217 CAGCGTCCAACCAACTAACAC 59.737 52.381 0.00 0.00 0.00 3.32
387 388 1.588674 CAGCGTCCAACCAACTAACA 58.411 50.000 0.00 0.00 0.00 2.41
388 389 0.872388 CCAGCGTCCAACCAACTAAC 59.128 55.000 0.00 0.00 0.00 2.34
389 390 0.887387 GCCAGCGTCCAACCAACTAA 60.887 55.000 0.00 0.00 0.00 2.24
390 391 1.302192 GCCAGCGTCCAACCAACTA 60.302 57.895 0.00 0.00 0.00 2.24
391 392 2.594592 GCCAGCGTCCAACCAACT 60.595 61.111 0.00 0.00 0.00 3.16
392 393 3.670377 GGCCAGCGTCCAACCAAC 61.670 66.667 0.00 0.00 0.00 3.77
393 394 2.992817 ATTGGCCAGCGTCCAACCAA 62.993 55.000 5.11 0.00 45.35 3.67
394 395 2.130821 TATTGGCCAGCGTCCAACCA 62.131 55.000 5.11 0.00 45.35 3.67
395 396 0.963355 TTATTGGCCAGCGTCCAACC 60.963 55.000 5.11 0.00 45.35 3.77
396 397 0.885196 TTTATTGGCCAGCGTCCAAC 59.115 50.000 5.11 0.00 45.35 3.77
397 398 1.621992 TTTTATTGGCCAGCGTCCAA 58.378 45.000 5.11 9.23 46.44 3.53
398 399 1.846007 ATTTTATTGGCCAGCGTCCA 58.154 45.000 5.11 0.00 0.00 4.02
399 400 4.379339 TTTATTTTATTGGCCAGCGTCC 57.621 40.909 5.11 0.00 0.00 4.79
421 422 1.152756 ACTGCGTCTGGCCCTTTTT 60.153 52.632 0.00 0.00 42.61 1.94
422 423 1.600916 GACTGCGTCTGGCCCTTTT 60.601 57.895 0.00 0.00 42.61 2.27
423 424 2.032681 GACTGCGTCTGGCCCTTT 59.967 61.111 0.00 0.00 42.61 3.11
424 425 4.021925 GGACTGCGTCTGGCCCTT 62.022 66.667 0.00 0.00 42.61 3.95
427 428 3.075005 TAGGGACTGCGTCTGGCC 61.075 66.667 0.00 0.00 41.52 5.36
428 429 2.184579 GTAGGGACTGCGTCTGGC 59.815 66.667 8.26 0.00 41.52 4.85
442 443 0.320073 TTCGTTTGGGTCAGCCGTAG 60.320 55.000 0.00 0.00 34.97 3.51
443 444 0.322322 ATTCGTTTGGGTCAGCCGTA 59.678 50.000 0.00 0.00 34.97 4.02
444 445 0.322322 TATTCGTTTGGGTCAGCCGT 59.678 50.000 0.00 0.00 34.97 5.68
445 446 1.444836 TTATTCGTTTGGGTCAGCCG 58.555 50.000 0.00 0.00 34.97 5.52
446 447 3.926821 TTTTATTCGTTTGGGTCAGCC 57.073 42.857 0.00 0.00 0.00 4.85
447 448 4.612943 TGTTTTTATTCGTTTGGGTCAGC 58.387 39.130 0.00 0.00 0.00 4.26
448 449 5.912955 GTCTGTTTTTATTCGTTTGGGTCAG 59.087 40.000 0.00 0.00 0.00 3.51
449 450 5.591067 AGTCTGTTTTTATTCGTTTGGGTCA 59.409 36.000 0.00 0.00 0.00 4.02
450 451 6.068473 AGTCTGTTTTTATTCGTTTGGGTC 57.932 37.500 0.00 0.00 0.00 4.46
451 452 7.571080 TTAGTCTGTTTTTATTCGTTTGGGT 57.429 32.000 0.00 0.00 0.00 4.51
452 453 8.859517 TTTTAGTCTGTTTTTATTCGTTTGGG 57.140 30.769 0.00 0.00 0.00 4.12
453 454 8.476925 GCTTTTAGTCTGTTTTTATTCGTTTGG 58.523 33.333 0.00 0.00 0.00 3.28
454 455 8.476925 GGCTTTTAGTCTGTTTTTATTCGTTTG 58.523 33.333 0.00 0.00 0.00 2.93
455 456 7.377662 CGGCTTTTAGTCTGTTTTTATTCGTTT 59.622 33.333 0.00 0.00 0.00 3.60
456 457 6.854381 CGGCTTTTAGTCTGTTTTTATTCGTT 59.146 34.615 0.00 0.00 0.00 3.85
457 458 6.368213 CGGCTTTTAGTCTGTTTTTATTCGT 58.632 36.000 0.00 0.00 0.00 3.85
458 459 5.793457 CCGGCTTTTAGTCTGTTTTTATTCG 59.207 40.000 0.00 0.00 0.00 3.34
459 460 6.675026 ACCGGCTTTTAGTCTGTTTTTATTC 58.325 36.000 0.00 0.00 0.00 1.75
460 461 6.644248 ACCGGCTTTTAGTCTGTTTTTATT 57.356 33.333 0.00 0.00 0.00 1.40
461 462 6.263617 TGAACCGGCTTTTAGTCTGTTTTTAT 59.736 34.615 0.00 0.00 27.44 1.40
462 463 5.589452 TGAACCGGCTTTTAGTCTGTTTTTA 59.411 36.000 0.00 0.00 27.44 1.52
463 464 4.399934 TGAACCGGCTTTTAGTCTGTTTTT 59.600 37.500 0.00 0.00 27.44 1.94
464 465 3.949113 TGAACCGGCTTTTAGTCTGTTTT 59.051 39.130 0.00 0.00 27.44 2.43
465 466 3.547746 TGAACCGGCTTTTAGTCTGTTT 58.452 40.909 0.00 0.00 27.44 2.83
466 467 3.202829 TGAACCGGCTTTTAGTCTGTT 57.797 42.857 0.00 0.00 29.95 3.16
467 468 2.922740 TGAACCGGCTTTTAGTCTGT 57.077 45.000 0.00 0.00 0.00 3.41
468 469 2.348666 CGATGAACCGGCTTTTAGTCTG 59.651 50.000 0.00 0.00 0.00 3.51
469 470 2.618053 CGATGAACCGGCTTTTAGTCT 58.382 47.619 0.00 0.00 0.00 3.24
470 471 1.062148 GCGATGAACCGGCTTTTAGTC 59.938 52.381 0.00 0.00 0.00 2.59
471 472 1.084289 GCGATGAACCGGCTTTTAGT 58.916 50.000 0.00 0.00 0.00 2.24
472 473 1.083489 TGCGATGAACCGGCTTTTAG 58.917 50.000 0.00 0.00 0.00 1.85
473 474 1.524848 TTGCGATGAACCGGCTTTTA 58.475 45.000 0.00 0.00 0.00 1.52
474 475 0.887933 ATTGCGATGAACCGGCTTTT 59.112 45.000 0.00 0.00 0.00 2.27
475 476 1.745232 TATTGCGATGAACCGGCTTT 58.255 45.000 0.00 0.00 0.00 3.51
476 477 1.873591 GATATTGCGATGAACCGGCTT 59.126 47.619 0.00 0.00 0.00 4.35
477 478 1.070758 AGATATTGCGATGAACCGGCT 59.929 47.619 0.00 0.00 0.00 5.52
478 479 1.512926 AGATATTGCGATGAACCGGC 58.487 50.000 0.00 0.00 0.00 6.13
479 480 4.748892 AGATAGATATTGCGATGAACCGG 58.251 43.478 0.00 0.00 0.00 5.28
480 481 5.457148 GCTAGATAGATATTGCGATGAACCG 59.543 44.000 0.00 0.00 0.00 4.44
493 494 6.326323 TGTTGTGAATGGGTGCTAGATAGATA 59.674 38.462 0.00 0.00 0.00 1.98
495 496 4.469586 TGTTGTGAATGGGTGCTAGATAGA 59.530 41.667 0.00 0.00 0.00 1.98
497 498 4.835284 TGTTGTGAATGGGTGCTAGATA 57.165 40.909 0.00 0.00 0.00 1.98
500 501 4.582701 TTTTGTTGTGAATGGGTGCTAG 57.417 40.909 0.00 0.00 0.00 3.42
502 503 5.543507 TTATTTTGTTGTGAATGGGTGCT 57.456 34.783 0.00 0.00 0.00 4.40
512 513 7.515998 CGCTTGGTACCTTTTTATTTTGTTGTG 60.516 37.037 14.36 0.00 0.00 3.33
515 516 5.464057 GCGCTTGGTACCTTTTTATTTTGTT 59.536 36.000 14.36 0.00 0.00 2.83
556 557 4.200874 ACCCATTTCGTTTTCAGTGTACA 58.799 39.130 0.00 0.00 0.00 2.90
557 558 4.823790 ACCCATTTCGTTTTCAGTGTAC 57.176 40.909 0.00 0.00 0.00 2.90
611 612 6.957631 ACCAACTATGTCCTGATTGAATACA 58.042 36.000 0.00 0.00 0.00 2.29
612 613 7.770897 AGAACCAACTATGTCCTGATTGAATAC 59.229 37.037 0.00 0.00 0.00 1.89
613 614 7.861629 AGAACCAACTATGTCCTGATTGAATA 58.138 34.615 0.00 0.00 0.00 1.75
614 615 6.725364 AGAACCAACTATGTCCTGATTGAAT 58.275 36.000 0.00 0.00 0.00 2.57
710 810 1.375396 CCACGCACGGAAGAATCCA 60.375 57.895 0.00 0.00 46.97 3.41
782 883 2.288458 CCGTAAACTTTGCCTTTCGTCA 59.712 45.455 0.00 0.00 0.00 4.35
785 886 3.612472 TTCCGTAAACTTTGCCTTTCG 57.388 42.857 0.00 0.00 0.00 3.46
844 946 2.069273 GAAGATGGCATCGGGATAACG 58.931 52.381 21.01 0.00 0.00 3.18
871 973 5.212532 AGAGCTGTCCAGATGATAATGTC 57.787 43.478 0.00 0.00 0.00 3.06
951 1062 1.606224 GGCTTCGTCGTGGTAAAGGAA 60.606 52.381 0.00 0.00 0.00 3.36
972 1083 3.652274 GCTAGAAGCCTAGAAGCATCAG 58.348 50.000 0.00 0.00 44.00 2.90
999 1110 3.372206 GTCCTGGCATTTATATAGCTGCG 59.628 47.826 0.00 0.00 35.47 5.18
1011 1122 0.323178 CTCAAGCAGGTCCTGGCATT 60.323 55.000 20.72 6.60 31.21 3.56
1018 1129 2.039405 CAGCAGCTCAAGCAGGTCC 61.039 63.158 4.59 0.00 45.16 4.46
1073 1189 2.283821 TGCCCCCATGGTTTGCTC 60.284 61.111 11.73 0.00 36.04 4.26
1075 1191 4.086547 GCTGCCCCCATGGTTTGC 62.087 66.667 11.73 10.55 36.04 3.68
1076 1192 3.762247 CGCTGCCCCCATGGTTTG 61.762 66.667 11.73 0.00 36.04 2.93
1135 1278 4.451150 GGCTCGACACGGCCATCA 62.451 66.667 2.24 0.00 46.84 3.07
1175 1318 3.047877 GTTGGCGGTGTCGGAAGG 61.048 66.667 0.00 0.00 36.79 3.46
1226 1369 1.226603 CGACGATCTCCCGGAACAC 60.227 63.158 0.73 0.00 0.00 3.32
1265 1408 1.005630 GATCTTCCAGCGCGGCTAT 60.006 57.895 8.83 6.51 36.40 2.97
1337 1480 8.909708 TTTTACAGCACATATTAGTTCAATGC 57.090 30.769 0.00 0.00 0.00 3.56
1384 1529 4.813027 AGTTTGAAGCATAAGCCATGTTG 58.187 39.130 0.00 0.00 43.56 3.33
1422 1567 2.559668 CGTCCACCCAGTACTTCTGTAA 59.440 50.000 0.00 0.00 42.19 2.41
1424 1569 0.966920 CGTCCACCCAGTACTTCTGT 59.033 55.000 0.00 0.00 42.19 3.41
1442 1587 0.535102 AGTTGTGCCTGGTCCTTTCG 60.535 55.000 0.00 0.00 0.00 3.46
1595 2753 5.756195 TGAACATTTCAGGTTCAGAACAG 57.244 39.130 15.36 7.09 46.95 3.16
1654 2812 0.100503 GCCAACAAACGTTCTGCAGT 59.899 50.000 14.67 0.00 0.00 4.40
1666 2824 3.667476 TGGACCTCCAGCCAACAA 58.333 55.556 0.00 0.00 42.01 2.83
1738 2896 3.255888 CCGGGTCATCGATCTTTATCTCA 59.744 47.826 0.00 0.00 0.00 3.27
1742 2900 1.002087 GGCCGGGTCATCGATCTTTAT 59.998 52.381 2.18 0.00 0.00 1.40
1744 2902 1.146263 GGCCGGGTCATCGATCTTT 59.854 57.895 2.18 0.00 0.00 2.52
1748 2906 4.241555 GCAGGCCGGGTCATCGAT 62.242 66.667 2.18 0.00 0.00 3.59
1939 3097 2.046892 CTCTTCCACTGCCCACCG 60.047 66.667 0.00 0.00 0.00 4.94
1986 3144 3.640029 CCAGATCATTCATTCTTTGGGGG 59.360 47.826 0.00 0.00 0.00 5.40
1990 3148 8.597662 AACAAAACCAGATCATTCATTCTTTG 57.402 30.769 0.00 0.00 0.00 2.77
2037 3195 5.034797 TCTTATCATAGTCGACAAACAGCG 58.965 41.667 19.50 0.00 0.00 5.18
2158 3327 4.462483 GGCAACCAAGGAAAGTGATATCAA 59.538 41.667 7.07 0.00 0.00 2.57
2160 3329 4.016444 TGGCAACCAAGGAAAGTGATATC 58.984 43.478 0.00 0.00 0.00 1.63
2179 3348 5.452077 CCAGTACTCAGAGGTTTATAGTGGC 60.452 48.000 1.53 0.00 0.00 5.01
2180 3349 5.452077 GCCAGTACTCAGAGGTTTATAGTGG 60.452 48.000 11.97 11.97 36.57 4.00
2181 3350 5.361285 AGCCAGTACTCAGAGGTTTATAGTG 59.639 44.000 1.53 0.00 0.00 2.74
2241 3410 3.307480 CCCTCTGATCGGGTACACTTTTT 60.307 47.826 0.62 0.00 36.91 1.94
2242 3411 2.236395 CCCTCTGATCGGGTACACTTTT 59.764 50.000 0.62 0.00 36.91 2.27
2243 3412 1.831736 CCCTCTGATCGGGTACACTTT 59.168 52.381 0.62 0.00 36.91 2.66
2244 3413 1.006758 TCCCTCTGATCGGGTACACTT 59.993 52.381 0.62 0.00 42.56 3.16
2245 3414 0.629596 TCCCTCTGATCGGGTACACT 59.370 55.000 0.62 0.00 42.56 3.55
2246 3415 1.033574 CTCCCTCTGATCGGGTACAC 58.966 60.000 0.62 0.00 42.56 2.90
2247 3416 0.629596 ACTCCCTCTGATCGGGTACA 59.370 55.000 0.62 0.00 42.56 2.90
2248 3417 2.653234 TACTCCCTCTGATCGGGTAC 57.347 55.000 0.62 0.00 42.56 3.34
2249 3418 2.714793 TGATACTCCCTCTGATCGGGTA 59.285 50.000 0.62 0.00 42.56 3.69
2250 3419 1.499438 TGATACTCCCTCTGATCGGGT 59.501 52.381 0.62 0.00 42.56 5.28
2251 3420 2.294449 TGATACTCCCTCTGATCGGG 57.706 55.000 0.62 0.00 43.38 5.14
2252 3421 4.881019 AAATGATACTCCCTCTGATCGG 57.119 45.455 0.00 0.00 0.00 4.18
2253 3422 7.606349 TGAATAAATGATACTCCCTCTGATCG 58.394 38.462 0.00 0.00 0.00 3.69
2254 3423 9.213799 GTTGAATAAATGATACTCCCTCTGATC 57.786 37.037 0.00 0.00 0.00 2.92
2255 3424 7.875041 CGTTGAATAAATGATACTCCCTCTGAT 59.125 37.037 0.00 0.00 0.00 2.90
2256 3425 7.069455 TCGTTGAATAAATGATACTCCCTCTGA 59.931 37.037 0.00 0.00 0.00 3.27
2257 3426 7.210174 TCGTTGAATAAATGATACTCCCTCTG 58.790 38.462 0.00 0.00 0.00 3.35
2258 3427 7.361457 TCGTTGAATAAATGATACTCCCTCT 57.639 36.000 0.00 0.00 0.00 3.69
2259 3428 8.433421 TTTCGTTGAATAAATGATACTCCCTC 57.567 34.615 0.00 0.00 33.75 4.30
2260 3429 8.801882 TTTTCGTTGAATAAATGATACTCCCT 57.198 30.769 0.00 0.00 33.75 4.20
2261 3430 8.674607 ACTTTTCGTTGAATAAATGATACTCCC 58.325 33.333 0.00 0.00 33.75 4.30
2262 3431 9.704098 GACTTTTCGTTGAATAAATGATACTCC 57.296 33.333 0.00 0.00 33.75 3.85
2267 3436 9.755064 CGTTAGACTTTTCGTTGAATAAATGAT 57.245 29.630 0.00 0.00 33.75 2.45
2268 3437 8.767085 ACGTTAGACTTTTCGTTGAATAAATGA 58.233 29.630 0.00 0.00 32.62 2.57
2269 3438 8.928844 ACGTTAGACTTTTCGTTGAATAAATG 57.071 30.769 0.00 0.00 32.62 2.32
2270 3439 8.225777 GGACGTTAGACTTTTCGTTGAATAAAT 58.774 33.333 0.00 0.00 36.67 1.40
2271 3440 7.224362 TGGACGTTAGACTTTTCGTTGAATAAA 59.776 33.333 0.00 0.00 36.67 1.40
2272 3441 6.700960 TGGACGTTAGACTTTTCGTTGAATAA 59.299 34.615 0.00 0.00 36.67 1.40
2273 3442 6.144402 GTGGACGTTAGACTTTTCGTTGAATA 59.856 38.462 0.00 0.00 36.67 1.75
2274 3443 5.050567 GTGGACGTTAGACTTTTCGTTGAAT 60.051 40.000 0.00 0.00 36.67 2.57
2275 3444 4.268405 GTGGACGTTAGACTTTTCGTTGAA 59.732 41.667 0.00 0.00 36.67 2.69
2276 3445 3.798337 GTGGACGTTAGACTTTTCGTTGA 59.202 43.478 0.00 0.00 36.67 3.18
2277 3446 3.552699 TGTGGACGTTAGACTTTTCGTTG 59.447 43.478 0.00 0.00 36.67 4.10
2350 3519 2.090658 CGTGTCAAGATTCGTGCAGTAC 59.909 50.000 0.00 0.00 0.00 2.73
2484 3655 4.988598 CGCAACCGCAGTCCCACT 62.989 66.667 0.00 0.00 38.40 4.00
2530 3701 2.100197 TGAAGTATGCCGTGCTAGACT 58.900 47.619 0.00 0.00 0.00 3.24
2571 3742 3.803340 AGAGAAGTGGGGGAGTAAATGA 58.197 45.455 0.00 0.00 0.00 2.57
2927 4104 2.048222 CGGCATCACTGACACCGT 60.048 61.111 11.73 0.00 39.05 4.83
2933 4110 2.347114 CCACACCGGCATCACTGA 59.653 61.111 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.