Multiple sequence alignment - TraesCS3D01G135300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G135300 chr3D 100.000 1958 0 0 1903 3860 94493464 94495421 0.000000e+00 3616.0
1 TraesCS3D01G135300 chr3D 100.000 1615 0 0 1 1615 94491562 94493176 0.000000e+00 2983.0
2 TraesCS3D01G135300 chr3D 80.952 252 28 15 150 388 421007976 421007732 8.520000e-42 182.0
3 TraesCS3D01G135300 chr3D 89.167 120 13 0 1996 2115 94493464 94493583 2.400000e-32 150.0
4 TraesCS3D01G135300 chr3D 89.167 120 13 0 1903 2022 94493557 94493676 2.400000e-32 150.0
5 TraesCS3D01G135300 chr3D 89.888 89 8 1 500 587 112691013 112690925 3.150000e-21 113.0
6 TraesCS3D01G135300 chr3D 77.451 204 34 8 1903 2097 94492975 94493175 1.130000e-20 111.0
7 TraesCS3D01G135300 chr3D 77.451 204 34 7 1414 1614 94493464 94493658 1.130000e-20 111.0
8 TraesCS3D01G135300 chr3D 78.689 183 25 7 3657 3838 338924160 338923991 4.080000e-20 110.0
9 TraesCS3D01G135300 chr3A 91.036 1941 112 29 1933 3860 547476522 547478413 0.000000e+00 2564.0
10 TraesCS3D01G135300 chr3A 88.723 1002 59 23 593 1560 547475041 547476022 0.000000e+00 1175.0
11 TraesCS3D01G135300 chr3A 79.602 201 24 10 1921 2114 547476420 547476610 1.130000e-25 128.0
12 TraesCS3D01G135300 chr3A 88.764 89 10 0 503 591 716778709 716778621 4.080000e-20 110.0
13 TraesCS3D01G135300 chr3A 87.234 94 12 0 500 593 588948363 588948270 1.470000e-19 108.0
14 TraesCS3D01G135300 chr3A 87.097 93 6 3 1417 1509 547475936 547476022 2.450000e-17 100.0
15 TraesCS3D01G135300 chr3A 92.063 63 5 0 3776 3838 465834055 465834117 5.310000e-14 89.8
16 TraesCS3D01G135300 chr3B 92.449 1629 85 17 1915 3527 144812669 144814275 0.000000e+00 2292.0
17 TraesCS3D01G135300 chr3B 90.900 1011 39 15 585 1570 144811678 144812660 0.000000e+00 1308.0
18 TraesCS3D01G135300 chr3B 92.814 334 16 2 3530 3860 144814594 144814922 9.700000e-131 477.0
19 TraesCS3D01G135300 chr3B 88.491 391 30 7 1 380 21174680 21175066 3.510000e-125 459.0
20 TraesCS3D01G135300 chr3B 86.768 393 34 9 1 378 70094306 70093917 4.610000e-114 422.0
21 TraesCS3D01G135300 chr3B 89.055 201 19 3 1417 1614 144812558 144812758 2.980000e-61 246.0
22 TraesCS3D01G135300 chr3B 93.269 104 7 0 1417 1520 144812609 144812712 1.860000e-33 154.0
23 TraesCS3D01G135300 chr3B 92.233 103 8 0 2011 2113 144812672 144812774 3.110000e-31 147.0
24 TraesCS3D01G135300 chr3B 88.889 90 6 2 378 463 144811425 144811514 1.470000e-19 108.0
25 TraesCS3D01G135300 chr3B 78.857 175 23 7 3657 3830 437499708 437499547 5.270000e-19 106.0
26 TraesCS3D01G135300 chr7D 88.520 392 32 7 1 382 462334895 462335283 2.720000e-126 462.0
27 TraesCS3D01G135300 chr7D 85.106 94 14 0 3661 3754 264930959 264931052 3.170000e-16 97.1
28 TraesCS3D01G135300 chr6A 87.500 376 36 7 15 382 89309285 89308913 1.280000e-114 424.0
29 TraesCS3D01G135300 chr6A 90.588 85 8 0 503 587 613688247 613688331 3.150000e-21 113.0
30 TraesCS3D01G135300 chr6A 85.455 110 12 4 499 607 547593781 547593887 1.130000e-20 111.0
31 TraesCS3D01G135300 chr2A 86.598 388 39 9 1 378 4762513 4762897 2.150000e-112 416.0
32 TraesCS3D01G135300 chr2A 90.769 65 6 0 3774 3838 174796600 174796664 1.910000e-13 87.9
33 TraesCS3D01G135300 chr1D 88.604 351 24 4 2 343 375354665 375355008 2.780000e-111 412.0
34 TraesCS3D01G135300 chr1D 92.537 67 5 0 3774 3840 110338964 110339030 3.170000e-16 97.1
35 TraesCS3D01G135300 chr1B 86.243 378 40 9 15 382 336270713 336271088 2.160000e-107 399.0
36 TraesCS3D01G135300 chr2D 91.000 300 19 6 1 299 198136832 198136540 7.770000e-107 398.0
37 TraesCS3D01G135300 chr7B 84.010 394 47 12 1 380 693834876 693835267 7.880000e-97 364.0
38 TraesCS3D01G135300 chr7A 80.952 189 22 6 3659 3846 560306159 560305984 1.870000e-28 137.0
39 TraesCS3D01G135300 chr5D 83.688 141 14 6 251 382 341559154 341559014 1.460000e-24 124.0
40 TraesCS3D01G135300 chr5D 89.130 92 8 2 500 590 410447223 410447313 3.150000e-21 113.0
41 TraesCS3D01G135300 chr5D 80.576 139 16 8 252 380 479095362 479095225 3.170000e-16 97.1
42 TraesCS3D01G135300 chr6B 88.542 96 10 1 495 590 134656810 134656904 8.760000e-22 115.0
43 TraesCS3D01G135300 chr6B 90.698 86 8 0 502 587 531739564 531739479 8.760000e-22 115.0
44 TraesCS3D01G135300 chr6D 87.129 101 12 1 491 591 25851107 25851206 3.150000e-21 113.0
45 TraesCS3D01G135300 chr4D 83.088 136 12 8 257 382 51991844 51991978 3.150000e-21 113.0
46 TraesCS3D01G135300 chr4D 88.298 94 9 2 290 382 477741973 477741881 1.130000e-20 111.0
47 TraesCS3D01G135300 chr2B 93.220 59 4 0 3692 3750 543554106 543554164 1.910000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G135300 chr3D 94491562 94495421 3859 False 1186.833333 3616 88.872667 1 3860 6 chr3D.!!$F1 3859
1 TraesCS3D01G135300 chr3A 547475041 547478413 3372 False 991.750000 2564 86.614500 593 3860 4 chr3A.!!$F2 3267
2 TraesCS3D01G135300 chr3B 144811425 144814922 3497 False 676.000000 2292 91.372714 378 3860 7 chr3B.!!$F2 3482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 449 0.035630 AGATGTGCTTGGGAGAGTGC 60.036 55.0 0.00 0.0 0.00 4.40 F
447 450 0.321919 GATGTGCTTGGGAGAGTGCA 60.322 55.0 0.00 0.0 0.00 4.57 F
448 451 0.322277 ATGTGCTTGGGAGAGTGCAG 60.322 55.0 0.00 0.0 36.03 4.41 F
2042 2676 0.454196 AACAACAACACCGTGGAAGC 59.546 50.0 3.03 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2963 0.178981 ATGTTGCTCTTGTGCTGGGT 60.179 50.000 0.0 0.0 0.0 4.51 R
2365 3003 1.299648 CAACGCCCCTGGATCAAGA 59.700 57.895 0.0 0.0 0.0 3.02 R
2448 3086 5.395657 CCAGCCTGTTATCTGTGATGAGTTA 60.396 44.000 0.0 0.0 0.0 2.24 R
2929 3573 0.522286 TGCGTGTTGAGTTTTGCGTG 60.522 50.000 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.012895 GGCAACCTCGTGCGTGTG 62.013 66.667 0.00 0.00 45.91 3.82
48 49 4.012895 GCAACCTCGTGCGTGTGG 62.013 66.667 0.00 0.00 34.21 4.17
49 50 4.012895 CAACCTCGTGCGTGTGGC 62.013 66.667 0.00 0.00 43.96 5.01
80 81 4.468689 GCTCCCGCCGGCTACTTT 62.469 66.667 26.68 0.00 0.00 2.66
81 82 2.202892 CTCCCGCCGGCTACTTTC 60.203 66.667 26.68 0.00 0.00 2.62
82 83 4.137872 TCCCGCCGGCTACTTTCG 62.138 66.667 26.68 6.56 0.00 3.46
90 91 3.897819 GGCTACTTTCGCCGAAATG 57.102 52.632 13.29 9.68 37.87 2.32
91 92 1.084289 GGCTACTTTCGCCGAAATGT 58.916 50.000 13.29 14.58 37.87 2.71
92 93 1.467342 GGCTACTTTCGCCGAAATGTT 59.533 47.619 13.29 3.45 37.87 2.71
93 94 2.505866 GCTACTTTCGCCGAAATGTTG 58.494 47.619 13.29 13.83 30.85 3.33
94 95 2.727916 GCTACTTTCGCCGAAATGTTGG 60.728 50.000 13.29 3.51 30.85 3.77
95 96 0.596082 ACTTTCGCCGAAATGTTGGG 59.404 50.000 13.29 2.77 30.85 4.12
100 101 4.474846 CCGAAATGTTGGGCGGCG 62.475 66.667 0.51 0.51 37.08 6.46
101 102 4.474846 CGAAATGTTGGGCGGCGG 62.475 66.667 9.78 0.00 0.00 6.13
102 103 4.794439 GAAATGTTGGGCGGCGGC 62.794 66.667 26.59 26.59 38.90 6.53
132 133 4.548513 CGAGGGGGAGAGGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
133 134 3.369388 GAGGGGGAGAGGGGAGGT 61.369 72.222 0.00 0.00 0.00 3.85
134 135 3.700350 AGGGGGAGAGGGGAGGTG 61.700 72.222 0.00 0.00 0.00 4.00
135 136 4.825679 GGGGGAGAGGGGAGGTGG 62.826 77.778 0.00 0.00 0.00 4.61
136 137 4.026357 GGGGAGAGGGGAGGTGGT 62.026 72.222 0.00 0.00 0.00 4.16
137 138 2.125225 GGGAGAGGGGAGGTGGTT 59.875 66.667 0.00 0.00 0.00 3.67
138 139 2.301738 GGGAGAGGGGAGGTGGTTG 61.302 68.421 0.00 0.00 0.00 3.77
139 140 2.301738 GGAGAGGGGAGGTGGTTGG 61.302 68.421 0.00 0.00 0.00 3.77
140 141 1.539124 GAGAGGGGAGGTGGTTGGT 60.539 63.158 0.00 0.00 0.00 3.67
141 142 1.842381 GAGAGGGGAGGTGGTTGGTG 61.842 65.000 0.00 0.00 0.00 4.17
142 143 2.858974 AGGGGAGGTGGTTGGTGG 60.859 66.667 0.00 0.00 0.00 4.61
143 144 2.856988 GGGGAGGTGGTTGGTGGA 60.857 66.667 0.00 0.00 0.00 4.02
144 145 2.757077 GGGAGGTGGTTGGTGGAG 59.243 66.667 0.00 0.00 0.00 3.86
145 146 1.846124 GGGAGGTGGTTGGTGGAGA 60.846 63.158 0.00 0.00 0.00 3.71
146 147 1.423794 GGGAGGTGGTTGGTGGAGAA 61.424 60.000 0.00 0.00 0.00 2.87
147 148 0.476771 GGAGGTGGTTGGTGGAGAAA 59.523 55.000 0.00 0.00 0.00 2.52
148 149 1.133606 GGAGGTGGTTGGTGGAGAAAA 60.134 52.381 0.00 0.00 0.00 2.29
149 150 2.230660 GAGGTGGTTGGTGGAGAAAAG 58.769 52.381 0.00 0.00 0.00 2.27
150 151 0.673985 GGTGGTTGGTGGAGAAAAGC 59.326 55.000 0.00 0.00 0.00 3.51
151 152 0.310854 GTGGTTGGTGGAGAAAAGCG 59.689 55.000 0.00 0.00 0.00 4.68
152 153 0.106918 TGGTTGGTGGAGAAAAGCGT 60.107 50.000 0.00 0.00 0.00 5.07
153 154 0.310854 GGTTGGTGGAGAAAAGCGTG 59.689 55.000 0.00 0.00 0.00 5.34
154 155 0.310854 GTTGGTGGAGAAAAGCGTGG 59.689 55.000 0.00 0.00 0.00 4.94
155 156 0.821711 TTGGTGGAGAAAAGCGTGGG 60.822 55.000 0.00 0.00 0.00 4.61
156 157 2.626780 GGTGGAGAAAAGCGTGGGC 61.627 63.158 0.00 0.00 40.37 5.36
166 167 2.877691 GCGTGGGCTGAAATGTCC 59.122 61.111 0.00 0.00 35.83 4.02
167 168 1.675641 GCGTGGGCTGAAATGTCCT 60.676 57.895 0.00 0.00 35.83 3.85
168 169 1.648467 GCGTGGGCTGAAATGTCCTC 61.648 60.000 0.00 0.00 35.83 3.71
169 170 1.026718 CGTGGGCTGAAATGTCCTCC 61.027 60.000 0.00 0.00 31.91 4.30
170 171 0.681243 GTGGGCTGAAATGTCCTCCC 60.681 60.000 3.20 3.20 35.75 4.30
171 172 1.139498 TGGGCTGAAATGTCCTCCCA 61.139 55.000 7.90 7.90 40.21 4.37
172 173 0.681243 GGGCTGAAATGTCCTCCCAC 60.681 60.000 5.00 0.00 35.45 4.61
173 174 0.681243 GGCTGAAATGTCCTCCCACC 60.681 60.000 0.00 0.00 0.00 4.61
174 175 0.038166 GCTGAAATGTCCTCCCACCA 59.962 55.000 0.00 0.00 0.00 4.17
175 176 1.547675 GCTGAAATGTCCTCCCACCAA 60.548 52.381 0.00 0.00 0.00 3.67
176 177 2.162681 CTGAAATGTCCTCCCACCAAC 58.837 52.381 0.00 0.00 0.00 3.77
177 178 1.203001 TGAAATGTCCTCCCACCAACC 60.203 52.381 0.00 0.00 0.00 3.77
178 179 0.251165 AAATGTCCTCCCACCAACCG 60.251 55.000 0.00 0.00 0.00 4.44
179 180 2.764637 AATGTCCTCCCACCAACCGC 62.765 60.000 0.00 0.00 0.00 5.68
180 181 3.637273 GTCCTCCCACCAACCGCT 61.637 66.667 0.00 0.00 0.00 5.52
181 182 3.319198 TCCTCCCACCAACCGCTC 61.319 66.667 0.00 0.00 0.00 5.03
182 183 4.410400 CCTCCCACCAACCGCTCC 62.410 72.222 0.00 0.00 0.00 4.70
183 184 4.410400 CTCCCACCAACCGCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
187 188 4.077184 CACCAACCGCTCCCGCTA 62.077 66.667 0.00 0.00 0.00 4.26
188 189 3.081409 ACCAACCGCTCCCGCTAT 61.081 61.111 0.00 0.00 0.00 2.97
189 190 1.759299 ACCAACCGCTCCCGCTATA 60.759 57.895 0.00 0.00 0.00 1.31
190 191 1.119574 ACCAACCGCTCCCGCTATAT 61.120 55.000 0.00 0.00 0.00 0.86
191 192 0.670546 CCAACCGCTCCCGCTATATG 60.671 60.000 0.00 0.00 0.00 1.78
192 193 1.004918 AACCGCTCCCGCTATATGC 60.005 57.895 0.00 0.00 38.57 3.14
193 194 1.754380 AACCGCTCCCGCTATATGCA 61.754 55.000 0.00 0.00 43.06 3.96
194 195 1.219124 CCGCTCCCGCTATATGCAT 59.781 57.895 3.79 3.79 43.06 3.96
195 196 1.086067 CCGCTCCCGCTATATGCATG 61.086 60.000 10.16 0.00 43.06 4.06
196 197 1.086067 CGCTCCCGCTATATGCATGG 61.086 60.000 10.16 0.58 43.06 3.66
197 198 1.372087 GCTCCCGCTATATGCATGGC 61.372 60.000 10.16 10.01 43.06 4.40
198 199 0.036105 CTCCCGCTATATGCATGGCA 60.036 55.000 10.16 0.00 44.86 4.92
199 200 0.321564 TCCCGCTATATGCATGGCAC 60.322 55.000 10.16 0.00 43.04 5.01
200 201 1.308069 CCCGCTATATGCATGGCACC 61.308 60.000 10.16 0.00 43.04 5.01
201 202 1.638388 CCGCTATATGCATGGCACCG 61.638 60.000 10.16 5.60 43.04 4.94
202 203 0.670239 CGCTATATGCATGGCACCGA 60.670 55.000 10.16 0.00 43.04 4.69
203 204 0.798776 GCTATATGCATGGCACCGAC 59.201 55.000 10.16 0.00 43.04 4.79
204 205 1.070821 CTATATGCATGGCACCGACG 58.929 55.000 10.16 0.00 43.04 5.12
205 206 0.320334 TATATGCATGGCACCGACGG 60.320 55.000 13.61 13.61 43.04 4.79
206 207 3.638704 TATATGCATGGCACCGACGGG 62.639 57.143 20.00 8.43 43.04 5.28
233 234 2.401990 GGCAAACCCGCGTATTCG 59.598 61.111 4.92 0.00 40.37 3.34
243 244 2.893404 CGTATTCGCGGGTTGGGG 60.893 66.667 6.13 0.00 0.00 4.96
244 245 2.269883 GTATTCGCGGGTTGGGGT 59.730 61.111 6.13 0.00 0.00 4.95
245 246 1.816679 GTATTCGCGGGTTGGGGTC 60.817 63.158 6.13 0.00 0.00 4.46
246 247 2.291801 TATTCGCGGGTTGGGGTCA 61.292 57.895 6.13 0.00 0.00 4.02
247 248 1.839148 TATTCGCGGGTTGGGGTCAA 61.839 55.000 6.13 0.00 0.00 3.18
248 249 3.717695 TATTCGCGGGTTGGGGTCAAG 62.718 57.143 6.13 0.00 32.92 3.02
249 250 4.636435 CGCGGGTTGGGGTCAAGT 62.636 66.667 0.00 0.00 32.92 3.16
250 251 2.203437 GCGGGTTGGGGTCAAGTT 60.203 61.111 0.00 0.00 32.92 2.66
251 252 1.830847 GCGGGTTGGGGTCAAGTTT 60.831 57.895 0.00 0.00 32.92 2.66
252 253 1.396607 GCGGGTTGGGGTCAAGTTTT 61.397 55.000 0.00 0.00 32.92 2.43
253 254 1.116308 CGGGTTGGGGTCAAGTTTTT 58.884 50.000 0.00 0.00 32.92 1.94
254 255 2.308690 CGGGTTGGGGTCAAGTTTTTA 58.691 47.619 0.00 0.00 32.92 1.52
255 256 2.034939 CGGGTTGGGGTCAAGTTTTTAC 59.965 50.000 0.00 0.00 32.92 2.01
256 257 2.366266 GGGTTGGGGTCAAGTTTTTACC 59.634 50.000 0.00 0.00 32.92 2.85
257 258 2.034939 GGTTGGGGTCAAGTTTTTACCG 59.965 50.000 0.00 0.00 33.89 4.02
258 259 1.320507 TGGGGTCAAGTTTTTACCGC 58.679 50.000 0.00 0.00 44.23 5.68
259 260 0.239082 GGGGTCAAGTTTTTACCGCG 59.761 55.000 0.00 0.00 36.63 6.46
260 261 0.386352 GGGTCAAGTTTTTACCGCGC 60.386 55.000 0.00 0.00 33.89 6.86
261 262 0.386352 GGTCAAGTTTTTACCGCGCC 60.386 55.000 0.00 0.00 0.00 6.53
262 263 0.386352 GTCAAGTTTTTACCGCGCCC 60.386 55.000 0.00 0.00 0.00 6.13
263 264 1.081041 CAAGTTTTTACCGCGCCCC 60.081 57.895 0.00 0.00 0.00 5.80
264 265 1.228337 AAGTTTTTACCGCGCCCCT 60.228 52.632 0.00 0.00 0.00 4.79
265 266 1.239296 AAGTTTTTACCGCGCCCCTC 61.239 55.000 0.00 0.00 0.00 4.30
266 267 1.967494 GTTTTTACCGCGCCCCTCA 60.967 57.895 0.00 0.00 0.00 3.86
267 268 1.228184 TTTTTACCGCGCCCCTCAA 60.228 52.632 0.00 0.00 0.00 3.02
268 269 0.822532 TTTTTACCGCGCCCCTCAAA 60.823 50.000 0.00 0.00 0.00 2.69
269 270 0.822532 TTTTACCGCGCCCCTCAAAA 60.823 50.000 0.00 0.00 0.00 2.44
270 271 0.609681 TTTACCGCGCCCCTCAAAAT 60.610 50.000 0.00 0.00 0.00 1.82
271 272 0.609681 TTACCGCGCCCCTCAAAATT 60.610 50.000 0.00 0.00 0.00 1.82
272 273 0.609681 TACCGCGCCCCTCAAAATTT 60.610 50.000 0.00 0.00 0.00 1.82
273 274 1.291906 CCGCGCCCCTCAAAATTTT 59.708 52.632 0.00 0.00 0.00 1.82
274 275 0.320334 CCGCGCCCCTCAAAATTTTT 60.320 50.000 0.00 0.00 0.00 1.94
300 301 3.977244 GGCCACGTTTGCTGGGTG 61.977 66.667 0.00 0.00 0.00 4.61
301 302 4.645921 GCCACGTTTGCTGGGTGC 62.646 66.667 0.00 0.00 43.25 5.01
302 303 4.326766 CCACGTTTGCTGGGTGCG 62.327 66.667 0.00 0.00 46.63 5.34
303 304 4.326766 CACGTTTGCTGGGTGCGG 62.327 66.667 0.00 0.00 46.63 5.69
306 307 2.676471 GTTTGCTGGGTGCGGGAT 60.676 61.111 0.00 0.00 46.63 3.85
307 308 2.117206 TTTGCTGGGTGCGGGATT 59.883 55.556 0.00 0.00 46.63 3.01
308 309 1.532794 TTTGCTGGGTGCGGGATTT 60.533 52.632 0.00 0.00 46.63 2.17
309 310 1.118356 TTTGCTGGGTGCGGGATTTT 61.118 50.000 0.00 0.00 46.63 1.82
310 311 1.531739 TTGCTGGGTGCGGGATTTTC 61.532 55.000 0.00 0.00 46.63 2.29
311 312 2.710902 GCTGGGTGCGGGATTTTCC 61.711 63.158 0.00 0.00 35.23 3.13
312 313 1.304052 CTGGGTGCGGGATTTTCCA 60.304 57.895 0.00 0.00 38.64 3.53
313 314 1.595093 CTGGGTGCGGGATTTTCCAC 61.595 60.000 0.00 0.00 38.64 4.02
314 315 1.605165 GGGTGCGGGATTTTCCACA 60.605 57.895 0.00 0.00 38.64 4.17
315 316 1.584495 GGTGCGGGATTTTCCACAC 59.416 57.895 9.33 9.33 41.60 3.82
316 317 1.584495 GTGCGGGATTTTCCACACC 59.416 57.895 7.39 0.00 38.47 4.16
317 318 1.969064 TGCGGGATTTTCCACACCG 60.969 57.895 0.00 0.00 46.78 4.94
320 321 2.563297 GGGATTTTCCACACCGACC 58.437 57.895 0.00 0.00 38.64 4.79
321 322 0.963856 GGGATTTTCCACACCGACCC 60.964 60.000 0.00 0.00 38.64 4.46
322 323 1.303091 GGATTTTCCACACCGACCCG 61.303 60.000 0.00 0.00 36.28 5.28
323 324 1.918868 GATTTTCCACACCGACCCGC 61.919 60.000 0.00 0.00 0.00 6.13
324 325 2.684192 ATTTTCCACACCGACCCGCA 62.684 55.000 0.00 0.00 0.00 5.69
325 326 2.684192 TTTTCCACACCGACCCGCAT 62.684 55.000 0.00 0.00 0.00 4.73
326 327 2.684192 TTTCCACACCGACCCGCATT 62.684 55.000 0.00 0.00 0.00 3.56
327 328 2.671619 CCACACCGACCCGCATTT 60.672 61.111 0.00 0.00 0.00 2.32
328 329 2.265182 CCACACCGACCCGCATTTT 61.265 57.895 0.00 0.00 0.00 1.82
329 330 1.081509 CACACCGACCCGCATTTTG 60.082 57.895 0.00 0.00 0.00 2.44
330 331 1.228003 ACACCGACCCGCATTTTGA 60.228 52.632 0.00 0.00 0.00 2.69
331 332 1.209127 CACCGACCCGCATTTTGAC 59.791 57.895 0.00 0.00 0.00 3.18
332 333 1.228003 ACCGACCCGCATTTTGACA 60.228 52.632 0.00 0.00 0.00 3.58
333 334 1.234615 ACCGACCCGCATTTTGACAG 61.235 55.000 0.00 0.00 0.00 3.51
334 335 1.234615 CCGACCCGCATTTTGACAGT 61.235 55.000 0.00 0.00 0.00 3.55
335 336 0.591170 CGACCCGCATTTTGACAGTT 59.409 50.000 0.00 0.00 0.00 3.16
336 337 1.801771 CGACCCGCATTTTGACAGTTA 59.198 47.619 0.00 0.00 0.00 2.24
337 338 2.418628 CGACCCGCATTTTGACAGTTAT 59.581 45.455 0.00 0.00 0.00 1.89
338 339 3.119990 CGACCCGCATTTTGACAGTTATT 60.120 43.478 0.00 0.00 0.00 1.40
339 340 4.614993 CGACCCGCATTTTGACAGTTATTT 60.615 41.667 0.00 0.00 0.00 1.40
340 341 5.208463 ACCCGCATTTTGACAGTTATTTT 57.792 34.783 0.00 0.00 0.00 1.82
341 342 4.987912 ACCCGCATTTTGACAGTTATTTTG 59.012 37.500 0.00 0.00 0.00 2.44
342 343 4.143137 CCCGCATTTTGACAGTTATTTTGC 60.143 41.667 0.00 0.00 0.00 3.68
343 344 4.447054 CCGCATTTTGACAGTTATTTTGCA 59.553 37.500 0.00 0.00 0.00 4.08
344 345 5.388682 CCGCATTTTGACAGTTATTTTGCAG 60.389 40.000 0.00 0.00 0.00 4.41
345 346 5.388682 CGCATTTTGACAGTTATTTTGCAGG 60.389 40.000 0.00 0.00 0.00 4.85
346 347 5.466393 GCATTTTGACAGTTATTTTGCAGGT 59.534 36.000 0.00 0.00 0.00 4.00
347 348 6.346838 GCATTTTGACAGTTATTTTGCAGGTC 60.347 38.462 0.00 0.00 0.00 3.85
348 349 4.481930 TTGACAGTTATTTTGCAGGTCG 57.518 40.909 0.00 0.00 0.00 4.79
349 350 2.811431 TGACAGTTATTTTGCAGGTCGG 59.189 45.455 0.00 0.00 0.00 4.79
350 351 3.071479 GACAGTTATTTTGCAGGTCGGA 58.929 45.455 0.00 0.00 0.00 4.55
351 352 2.812011 ACAGTTATTTTGCAGGTCGGAC 59.188 45.455 0.00 0.00 0.00 4.79
352 353 2.073816 AGTTATTTTGCAGGTCGGACG 58.926 47.619 1.43 0.00 0.00 4.79
353 354 1.802365 GTTATTTTGCAGGTCGGACGT 59.198 47.619 1.43 0.00 0.00 4.34
354 355 2.172851 TATTTTGCAGGTCGGACGTT 57.827 45.000 0.00 0.00 0.00 3.99
355 356 1.314730 ATTTTGCAGGTCGGACGTTT 58.685 45.000 0.00 0.00 0.00 3.60
356 357 1.096416 TTTTGCAGGTCGGACGTTTT 58.904 45.000 0.00 0.00 0.00 2.43
357 358 0.378962 TTTGCAGGTCGGACGTTTTG 59.621 50.000 0.00 0.00 0.00 2.44
358 359 2.054140 TTGCAGGTCGGACGTTTTGC 62.054 55.000 14.50 14.50 0.00 3.68
360 361 2.663852 AGGTCGGACGTTTTGCGG 60.664 61.111 1.43 0.00 46.52 5.69
361 362 3.719144 GGTCGGACGTTTTGCGGG 61.719 66.667 1.43 0.00 46.52 6.13
362 363 3.719144 GTCGGACGTTTTGCGGGG 61.719 66.667 0.00 0.00 46.52 5.73
363 364 4.238654 TCGGACGTTTTGCGGGGT 62.239 61.111 0.00 0.00 46.52 4.95
364 365 3.719144 CGGACGTTTTGCGGGGTC 61.719 66.667 0.00 0.00 46.52 4.46
365 366 2.281276 GGACGTTTTGCGGGGTCT 60.281 61.111 0.00 0.00 46.52 3.85
366 367 2.613506 GGACGTTTTGCGGGGTCTG 61.614 63.158 0.00 0.00 46.52 3.51
367 368 3.249973 GACGTTTTGCGGGGTCTGC 62.250 63.158 0.00 0.00 46.52 4.26
368 369 2.978010 CGTTTTGCGGGGTCTGCT 60.978 61.111 0.30 0.00 36.85 4.24
369 370 1.669760 CGTTTTGCGGGGTCTGCTA 60.670 57.895 0.30 0.00 36.85 3.49
370 371 1.635663 CGTTTTGCGGGGTCTGCTAG 61.636 60.000 0.30 0.00 36.85 3.42
371 372 0.321298 GTTTTGCGGGGTCTGCTAGA 60.321 55.000 0.00 0.00 0.00 2.43
372 373 0.036388 TTTTGCGGGGTCTGCTAGAG 60.036 55.000 0.00 0.00 0.00 2.43
373 374 1.192146 TTTGCGGGGTCTGCTAGAGT 61.192 55.000 0.00 0.00 0.00 3.24
374 375 1.192146 TTGCGGGGTCTGCTAGAGTT 61.192 55.000 0.00 0.00 0.00 3.01
375 376 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
376 377 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
379 380 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
390 391 5.812642 GCTAGAGTTGCTCTAATAAACTGCA 59.187 40.000 7.22 0.00 41.74 4.41
437 440 1.199327 CAGAACTGCCAGATGTGCTTG 59.801 52.381 0.00 0.00 0.00 4.01
438 441 0.524862 GAACTGCCAGATGTGCTTGG 59.475 55.000 0.00 0.00 0.00 3.61
443 446 0.747283 GCCAGATGTGCTTGGGAGAG 60.747 60.000 0.00 0.00 0.00 3.20
444 447 0.617413 CCAGATGTGCTTGGGAGAGT 59.383 55.000 0.00 0.00 0.00 3.24
446 449 0.035630 AGATGTGCTTGGGAGAGTGC 60.036 55.000 0.00 0.00 0.00 4.40
447 450 0.321919 GATGTGCTTGGGAGAGTGCA 60.322 55.000 0.00 0.00 0.00 4.57
448 451 0.322277 ATGTGCTTGGGAGAGTGCAG 60.322 55.000 0.00 0.00 36.03 4.41
466 496 2.089201 CAGCAGATGGCACATTTCTGA 58.911 47.619 17.64 0.00 45.38 3.27
467 497 2.490509 CAGCAGATGGCACATTTCTGAA 59.509 45.455 17.64 0.00 45.38 3.02
497 631 4.034975 GCTTCTCAATCTGATGCAAGTACC 59.965 45.833 0.00 0.00 35.52 3.34
498 632 4.824479 TCTCAATCTGATGCAAGTACCA 57.176 40.909 0.00 0.00 0.00 3.25
518 652 8.207521 GTACCATAGTACTCTCTTCGTAAACT 57.792 38.462 0.00 0.00 44.65 2.66
519 653 9.319143 GTACCATAGTACTCTCTTCGTAAACTA 57.681 37.037 0.00 0.00 44.65 2.24
520 654 8.798859 ACCATAGTACTCTCTTCGTAAACTAA 57.201 34.615 0.00 0.00 0.00 2.24
521 655 9.406113 ACCATAGTACTCTCTTCGTAAACTAAT 57.594 33.333 0.00 0.00 0.00 1.73
619 753 9.638239 ATTGTTCTTTCGTTGCAATATATTGTT 57.362 25.926 23.14 0.00 39.88 2.83
827 969 0.459489 GCAGTTGGCAAGTCAACCAA 59.541 50.000 13.40 0.00 45.81 3.67
862 1004 6.183361 CGAATTCCTCCTCTCCCCTTTATAAA 60.183 42.308 0.00 0.00 0.00 1.40
954 1096 2.732412 TGAAGAAGTTCAGGCGAGAG 57.268 50.000 5.50 0.00 37.79 3.20
955 1097 1.964223 TGAAGAAGTTCAGGCGAGAGT 59.036 47.619 5.50 0.00 37.79 3.24
956 1098 3.154710 TGAAGAAGTTCAGGCGAGAGTA 58.845 45.455 5.50 0.00 37.79 2.59
957 1099 3.191581 TGAAGAAGTTCAGGCGAGAGTAG 59.808 47.826 5.50 0.00 37.79 2.57
958 1100 1.474879 AGAAGTTCAGGCGAGAGTAGC 59.525 52.381 5.50 0.00 0.00 3.58
1011 1161 2.873525 GCTAGGGATGGACTCCGCC 61.874 68.421 0.00 0.00 46.01 6.13
1188 1362 2.357836 CCTGCTGCCCCTGACATT 59.642 61.111 0.00 0.00 0.00 2.71
1212 1386 1.807165 CCTGCTGATCGTCACCGTG 60.807 63.158 0.00 0.00 35.01 4.94
1394 1568 1.450848 ATCTCACCTACGCCGTCGA 60.451 57.895 0.00 0.00 39.41 4.20
1396 1570 3.713615 CTCACCTACGCCGTCGACG 62.714 68.421 30.33 30.33 39.41 5.12
1486 1660 2.590575 CCACCGCCGTGAACAACT 60.591 61.111 6.77 0.00 43.14 3.16
1487 1661 2.184167 CCACCGCCGTGAACAACTT 61.184 57.895 6.77 0.00 43.14 2.66
1550 2145 0.603569 AACAACGCCACCAACAACAA 59.396 45.000 0.00 0.00 0.00 2.83
1591 2186 3.770040 CCACCACCATCGCCGAGA 61.770 66.667 0.00 0.00 0.00 4.04
1592 2187 2.264480 CACCACCATCGCCGAGAA 59.736 61.111 0.00 0.00 0.00 2.87
1593 2188 1.811266 CACCACCATCGCCGAGAAG 60.811 63.158 0.00 0.00 0.00 2.85
1594 2189 1.982395 ACCACCATCGCCGAGAAGA 60.982 57.895 0.00 0.00 0.00 2.87
1595 2190 1.218047 CCACCATCGCCGAGAAGAA 59.782 57.895 0.00 0.00 0.00 2.52
1596 2191 1.084370 CCACCATCGCCGAGAAGAAC 61.084 60.000 0.00 0.00 0.00 3.01
1597 2192 1.153823 ACCATCGCCGAGAAGAACG 60.154 57.895 0.00 0.00 0.00 3.95
1605 2200 1.706443 CCGAGAAGAACGGTACCAAC 58.294 55.000 13.54 2.22 44.57 3.77
1606 2201 1.000060 CCGAGAAGAACGGTACCAACA 60.000 52.381 13.54 0.00 44.57 3.33
1607 2202 2.546373 CCGAGAAGAACGGTACCAACAA 60.546 50.000 13.54 0.00 44.57 2.83
1608 2203 2.473984 CGAGAAGAACGGTACCAACAAC 59.526 50.000 13.54 0.00 0.00 3.32
1609 2204 3.460103 GAGAAGAACGGTACCAACAACA 58.540 45.455 13.54 0.00 0.00 3.33
1610 2205 3.200483 AGAAGAACGGTACCAACAACAC 58.800 45.455 13.54 0.00 0.00 3.32
1611 2206 1.957668 AGAACGGTACCAACAACACC 58.042 50.000 13.54 0.00 0.00 4.16
1612 2207 1.209990 AGAACGGTACCAACAACACCA 59.790 47.619 13.54 0.00 32.32 4.17
1613 2208 2.158726 AGAACGGTACCAACAACACCAT 60.159 45.455 13.54 0.00 32.32 3.55
1614 2209 2.351706 ACGGTACCAACAACACCATT 57.648 45.000 13.54 0.00 32.32 3.16
1929 2524 2.388310 TTGTCGAGAACAACACCACA 57.612 45.000 0.00 0.00 42.95 4.17
1931 2526 2.701107 TGTCGAGAACAACACCACAAA 58.299 42.857 0.00 0.00 34.03 2.83
1970 2604 4.920112 CGCCACCAACACCACCGA 62.920 66.667 0.00 0.00 0.00 4.69
1972 2606 2.190843 CCACCAACACCACCGACA 59.809 61.111 0.00 0.00 0.00 4.35
2000 2634 0.738389 AAGAACGGCACCAACAACAG 59.262 50.000 0.00 0.00 0.00 3.16
2008 2642 1.202394 GCACCAACAACAGCATTGTCA 60.202 47.619 6.81 0.00 36.23 3.58
2013 2647 4.099881 ACCAACAACAGCATTGTCAAGAAT 59.900 37.500 6.81 0.00 36.23 2.40
2015 2649 6.183360 ACCAACAACAGCATTGTCAAGAATAA 60.183 34.615 6.81 0.00 36.23 1.40
2016 2650 6.144402 CCAACAACAGCATTGTCAAGAATAAC 59.856 38.462 6.81 0.00 36.23 1.89
2017 2651 5.451908 ACAACAGCATTGTCAAGAATAACG 58.548 37.500 0.76 0.00 36.23 3.18
2018 2652 4.083581 ACAGCATTGTCAAGAATAACGC 57.916 40.909 0.00 0.00 29.46 4.84
2019 2653 3.119849 ACAGCATTGTCAAGAATAACGCC 60.120 43.478 0.00 0.00 29.46 5.68
2020 2654 3.081061 AGCATTGTCAAGAATAACGCCA 58.919 40.909 0.00 0.00 0.00 5.69
2021 2655 3.119849 AGCATTGTCAAGAATAACGCCAC 60.120 43.478 0.00 0.00 0.00 5.01
2022 2656 3.758300 CATTGTCAAGAATAACGCCACC 58.242 45.455 0.00 0.00 0.00 4.61
2023 2657 2.552599 TGTCAAGAATAACGCCACCA 57.447 45.000 0.00 0.00 0.00 4.17
2024 2658 2.852449 TGTCAAGAATAACGCCACCAA 58.148 42.857 0.00 0.00 0.00 3.67
2025 2659 2.550606 TGTCAAGAATAACGCCACCAAC 59.449 45.455 0.00 0.00 0.00 3.77
2026 2660 2.550606 GTCAAGAATAACGCCACCAACA 59.449 45.455 0.00 0.00 0.00 3.33
2027 2661 3.003897 GTCAAGAATAACGCCACCAACAA 59.996 43.478 0.00 0.00 0.00 2.83
2028 2662 3.003897 TCAAGAATAACGCCACCAACAAC 59.996 43.478 0.00 0.00 0.00 3.32
2029 2663 2.577700 AGAATAACGCCACCAACAACA 58.422 42.857 0.00 0.00 0.00 3.33
2030 2664 2.952978 AGAATAACGCCACCAACAACAA 59.047 40.909 0.00 0.00 0.00 2.83
2042 2676 0.454196 AACAACAACACCGTGGAAGC 59.546 50.000 3.03 0.00 0.00 3.86
2113 2750 1.604438 CCATCGTCGAGAACAACACCA 60.604 52.381 0.00 0.00 0.00 4.17
2114 2751 1.455786 CATCGTCGAGAACAACACCAC 59.544 52.381 0.00 0.00 0.00 4.16
2115 2752 0.742505 TCGTCGAGAACAACACCACT 59.257 50.000 0.00 0.00 0.00 4.00
2125 2762 1.603455 AACACCACTGGGAATGCCG 60.603 57.895 0.00 0.00 38.05 5.69
2147 2784 2.094957 GTGACGAAGGAGACCTGAAGAG 60.095 54.545 0.00 0.00 32.13 2.85
2223 2860 0.615331 CCGCCACCTCTGCCATATAT 59.385 55.000 0.00 0.00 0.00 0.86
2230 2867 3.055530 CACCTCTGCCATATATGACCTCC 60.056 52.174 14.54 0.00 0.00 4.30
2231 2868 2.167281 CCTCTGCCATATATGACCTCCG 59.833 54.545 14.54 0.00 0.00 4.63
2272 2909 2.357517 CTCGGTGCGTCCTGCTTT 60.358 61.111 0.00 0.00 46.63 3.51
2273 2910 2.357034 TCGGTGCGTCCTGCTTTC 60.357 61.111 0.00 0.00 46.63 2.62
2308 2946 3.870419 GCTTTGCAACATGTTTCTTTCCA 59.130 39.130 8.77 0.00 0.00 3.53
2312 2950 6.998968 TTGCAACATGTTTCTTTCCATTTT 57.001 29.167 8.77 0.00 0.00 1.82
2313 2951 6.360844 TGCAACATGTTTCTTTCCATTTTG 57.639 33.333 8.77 0.00 33.81 2.44
2315 2953 5.433855 CAACATGTTTCTTTCCATTTTGCG 58.566 37.500 8.77 0.00 0.00 4.85
2322 2960 7.185453 TGTTTCTTTCCATTTTGCGAATTTTG 58.815 30.769 0.00 0.00 0.00 2.44
2324 2962 6.523676 TCTTTCCATTTTGCGAATTTTGTC 57.476 33.333 0.00 0.00 0.00 3.18
2325 2963 6.045318 TCTTTCCATTTTGCGAATTTTGTCA 58.955 32.000 0.00 0.00 0.00 3.58
2326 2964 5.649602 TTCCATTTTGCGAATTTTGTCAC 57.350 34.783 0.00 0.00 0.00 3.67
2330 2968 2.791383 TTGCGAATTTTGTCACCCAG 57.209 45.000 0.00 0.00 0.00 4.45
2365 3003 9.142515 CAACATAATAACATCACTTGTGCAATT 57.857 29.630 0.00 0.00 38.99 2.32
2479 3117 2.032620 AGATAACAGGCTGGTACTCCG 58.967 52.381 15.75 0.00 36.30 4.63
2487 3125 0.680280 GCTGGTACTCCGAGGACTCA 60.680 60.000 10.70 6.29 36.30 3.41
2490 3128 0.255318 GGTACTCCGAGGACTCAGGA 59.745 60.000 10.70 10.78 33.57 3.86
2492 3130 2.657143 GTACTCCGAGGACTCAGGAAT 58.343 52.381 3.22 6.80 34.00 3.01
2505 3143 1.469703 TCAGGAATCAATGCAACAGCG 59.530 47.619 0.00 0.00 0.00 5.18
2515 3153 1.587547 TGCAACAGCGACACATACAA 58.412 45.000 0.00 0.00 0.00 2.41
2563 3201 2.042831 GCAATCCGCAACAGCTCCT 61.043 57.895 0.00 0.00 41.79 3.69
2581 3219 5.250774 AGCTCCTGTTTACCTCCTGAAATAA 59.749 40.000 0.00 0.00 0.00 1.40
2616 3254 2.501723 TGGGTTCAGGAGCTCAATACTC 59.498 50.000 17.19 8.13 0.00 2.59
2629 3273 4.626287 GCTCAATACTCTGGGAATGGTTCA 60.626 45.833 0.00 0.00 0.00 3.18
2642 3286 4.322198 GGAATGGTTCATCAACAGCAACAT 60.322 41.667 0.00 0.00 33.70 2.71
2656 3300 1.339438 GCAACATCTCTTCAGGAGGCA 60.339 52.381 0.00 0.00 42.10 4.75
2694 3338 1.535028 CAGCTTGTACGACAAATGGCA 59.465 47.619 0.00 0.00 37.69 4.92
2769 3413 3.953612 GGATAATGATGTGGCACCTTGAA 59.046 43.478 16.26 0.00 0.00 2.69
2814 3458 1.887198 GAAGAACAGGAGACTCCACGA 59.113 52.381 23.60 0.00 39.61 4.35
2855 3499 6.366340 AGGAAGACGAAGAGGACTATATGAA 58.634 40.000 0.00 0.00 0.00 2.57
2903 3547 7.244886 ACCATATTGCAGTACAGCTATATCA 57.755 36.000 19.17 2.19 39.67 2.15
2946 3590 1.201976 TGTCACGCAAAACTCAACACG 60.202 47.619 0.00 0.00 0.00 4.49
2975 3628 9.841295 TGTAGTACATCATTTATTCCTTAACCC 57.159 33.333 0.00 0.00 0.00 4.11
3139 3792 9.899226 GGTGCAAAAATAATAGTATCTTCATCC 57.101 33.333 0.00 0.00 0.00 3.51
3327 3980 1.117142 AGGACGGACGTTTTCCCTGA 61.117 55.000 0.00 0.00 42.27 3.86
3541 4510 5.282129 TGTTGGTCATATAAGTACAGGGGA 58.718 41.667 0.00 0.00 0.00 4.81
3548 4517 7.093858 GGTCATATAAGTACAGGGGACACTATC 60.094 44.444 0.00 0.00 0.00 2.08
3643 4612 6.043411 ACTGAGTAAATATCTTTCTGGCGAC 58.957 40.000 0.00 0.00 0.00 5.19
3691 4663 2.171840 GAGGCAGAGGTGAAGTACTCA 58.828 52.381 0.00 0.00 36.20 3.41
3692 4664 2.165437 GAGGCAGAGGTGAAGTACTCAG 59.835 54.545 0.00 0.00 36.20 3.35
3710 4682 0.106519 AGCACTTGTGCCAAGAGGTT 60.107 50.000 20.39 7.86 37.19 3.50
3766 4738 2.361085 AGGAGTATGGTCCTGGGTTT 57.639 50.000 0.00 0.00 45.91 3.27
3809 4781 3.703804 CCAGACCCTACCTGGTGTA 57.296 57.895 10.23 0.00 44.66 2.90
3831 4803 2.092699 GGAGCTTCTAGCAATGGGTCTT 60.093 50.000 1.09 0.00 45.56 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.988598 CACGCACGAGGTTGCCCT 62.989 66.667 0.00 0.00 46.66 5.19
30 31 4.012895 CACACGCACGAGGTTGCC 62.013 66.667 0.00 0.00 39.53 4.52
31 32 4.012895 CCACACGCACGAGGTTGC 62.013 66.667 0.00 0.00 39.28 4.17
32 33 4.012895 GCCACACGCACGAGGTTG 62.013 66.667 0.00 0.00 37.47 3.77
64 65 2.202892 GAAAGTAGCCGGCGGGAG 60.203 66.667 29.48 1.96 34.06 4.30
65 66 4.137872 CGAAAGTAGCCGGCGGGA 62.138 66.667 29.48 7.86 34.06 5.14
73 74 2.505866 CAACATTTCGGCGAAAGTAGC 58.494 47.619 34.33 0.00 34.92 3.58
74 75 2.159572 CCCAACATTTCGGCGAAAGTAG 60.160 50.000 34.33 27.68 34.92 2.57
75 76 1.807742 CCCAACATTTCGGCGAAAGTA 59.192 47.619 34.33 17.21 34.92 2.24
76 77 0.596082 CCCAACATTTCGGCGAAAGT 59.404 50.000 34.33 27.84 34.92 2.66
77 78 0.732538 GCCCAACATTTCGGCGAAAG 60.733 55.000 34.33 27.29 34.92 2.62
78 79 1.287503 GCCCAACATTTCGGCGAAA 59.712 52.632 33.79 33.79 35.94 3.46
79 80 2.958576 GCCCAACATTTCGGCGAA 59.041 55.556 19.83 19.83 31.92 4.70
83 84 4.474846 CGCCGCCCAACATTTCGG 62.475 66.667 0.00 0.00 44.29 4.30
84 85 4.474846 CCGCCGCCCAACATTTCG 62.475 66.667 0.00 0.00 0.00 3.46
85 86 4.794439 GCCGCCGCCCAACATTTC 62.794 66.667 0.00 0.00 0.00 2.17
115 116 4.548513 CCTCCCCTCTCCCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
116 117 3.369388 ACCTCCCCTCTCCCCCTC 61.369 72.222 0.00 0.00 0.00 4.30
117 118 3.700350 CACCTCCCCTCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
118 119 4.825679 CCACCTCCCCTCTCCCCC 62.826 77.778 0.00 0.00 0.00 5.40
119 120 3.581141 AACCACCTCCCCTCTCCCC 62.581 68.421 0.00 0.00 0.00 4.81
120 121 2.125225 AACCACCTCCCCTCTCCC 59.875 66.667 0.00 0.00 0.00 4.30
121 122 2.301738 CCAACCACCTCCCCTCTCC 61.302 68.421 0.00 0.00 0.00 3.71
122 123 1.539124 ACCAACCACCTCCCCTCTC 60.539 63.158 0.00 0.00 0.00 3.20
123 124 1.847968 CACCAACCACCTCCCCTCT 60.848 63.158 0.00 0.00 0.00 3.69
124 125 2.757077 CACCAACCACCTCCCCTC 59.243 66.667 0.00 0.00 0.00 4.30
125 126 2.858974 CCACCAACCACCTCCCCT 60.859 66.667 0.00 0.00 0.00 4.79
126 127 2.856988 TCCACCAACCACCTCCCC 60.857 66.667 0.00 0.00 0.00 4.81
127 128 1.423794 TTCTCCACCAACCACCTCCC 61.424 60.000 0.00 0.00 0.00 4.30
128 129 0.476771 TTTCTCCACCAACCACCTCC 59.523 55.000 0.00 0.00 0.00 4.30
129 130 2.230660 CTTTTCTCCACCAACCACCTC 58.769 52.381 0.00 0.00 0.00 3.85
130 131 1.754201 GCTTTTCTCCACCAACCACCT 60.754 52.381 0.00 0.00 0.00 4.00
131 132 0.673985 GCTTTTCTCCACCAACCACC 59.326 55.000 0.00 0.00 0.00 4.61
132 133 0.310854 CGCTTTTCTCCACCAACCAC 59.689 55.000 0.00 0.00 0.00 4.16
133 134 0.106918 ACGCTTTTCTCCACCAACCA 60.107 50.000 0.00 0.00 0.00 3.67
134 135 0.310854 CACGCTTTTCTCCACCAACC 59.689 55.000 0.00 0.00 0.00 3.77
135 136 0.310854 CCACGCTTTTCTCCACCAAC 59.689 55.000 0.00 0.00 0.00 3.77
136 137 0.821711 CCCACGCTTTTCTCCACCAA 60.822 55.000 0.00 0.00 0.00 3.67
137 138 1.228124 CCCACGCTTTTCTCCACCA 60.228 57.895 0.00 0.00 0.00 4.17
138 139 2.626780 GCCCACGCTTTTCTCCACC 61.627 63.158 0.00 0.00 0.00 4.61
139 140 1.600916 AGCCCACGCTTTTCTCCAC 60.601 57.895 0.00 0.00 45.55 4.02
140 141 1.600636 CAGCCCACGCTTTTCTCCA 60.601 57.895 0.00 0.00 45.55 3.86
141 142 0.889186 TTCAGCCCACGCTTTTCTCC 60.889 55.000 0.00 0.00 45.55 3.71
142 143 0.951558 TTTCAGCCCACGCTTTTCTC 59.048 50.000 0.00 0.00 45.55 2.87
143 144 1.270550 CATTTCAGCCCACGCTTTTCT 59.729 47.619 0.00 0.00 45.55 2.52
144 145 1.000274 ACATTTCAGCCCACGCTTTTC 60.000 47.619 0.00 0.00 45.55 2.29
145 146 1.000274 GACATTTCAGCCCACGCTTTT 60.000 47.619 0.00 0.00 45.55 2.27
146 147 0.598065 GACATTTCAGCCCACGCTTT 59.402 50.000 0.00 0.00 45.55 3.51
147 148 1.244019 GGACATTTCAGCCCACGCTT 61.244 55.000 0.00 0.00 45.55 4.68
149 150 1.648467 GAGGACATTTCAGCCCACGC 61.648 60.000 0.00 0.00 0.00 5.34
150 151 1.026718 GGAGGACATTTCAGCCCACG 61.027 60.000 0.00 0.00 0.00 4.94
151 152 0.681243 GGGAGGACATTTCAGCCCAC 60.681 60.000 0.00 0.00 36.87 4.61
152 153 1.139498 TGGGAGGACATTTCAGCCCA 61.139 55.000 6.82 6.82 41.78 5.36
153 154 0.681243 GTGGGAGGACATTTCAGCCC 60.681 60.000 0.00 0.00 37.22 5.19
154 155 0.681243 GGTGGGAGGACATTTCAGCC 60.681 60.000 0.00 0.00 0.00 4.85
155 156 0.038166 TGGTGGGAGGACATTTCAGC 59.962 55.000 0.00 0.00 0.00 4.26
156 157 2.162681 GTTGGTGGGAGGACATTTCAG 58.837 52.381 0.00 0.00 0.00 3.02
157 158 1.203001 GGTTGGTGGGAGGACATTTCA 60.203 52.381 0.00 0.00 0.00 2.69
158 159 1.545841 GGTTGGTGGGAGGACATTTC 58.454 55.000 0.00 0.00 0.00 2.17
159 160 0.251165 CGGTTGGTGGGAGGACATTT 60.251 55.000 0.00 0.00 0.00 2.32
160 161 1.378762 CGGTTGGTGGGAGGACATT 59.621 57.895 0.00 0.00 0.00 2.71
161 162 3.077907 CGGTTGGTGGGAGGACAT 58.922 61.111 0.00 0.00 0.00 3.06
162 163 3.948719 GCGGTTGGTGGGAGGACA 61.949 66.667 0.00 0.00 0.00 4.02
163 164 3.607370 GAGCGGTTGGTGGGAGGAC 62.607 68.421 0.00 0.00 0.00 3.85
164 165 3.319198 GAGCGGTTGGTGGGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
165 166 4.410400 GGAGCGGTTGGTGGGAGG 62.410 72.222 0.00 0.00 0.00 4.30
166 167 4.410400 GGGAGCGGTTGGTGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
184 185 0.798776 GTCGGTGCCATGCATATAGC 59.201 55.000 0.00 3.52 41.91 2.97
185 186 1.070821 CGTCGGTGCCATGCATATAG 58.929 55.000 0.00 0.00 41.91 1.31
186 187 0.320334 CCGTCGGTGCCATGCATATA 60.320 55.000 2.08 0.00 41.91 0.86
187 188 1.597854 CCGTCGGTGCCATGCATAT 60.598 57.895 2.08 0.00 41.91 1.78
188 189 2.203001 CCGTCGGTGCCATGCATA 60.203 61.111 2.08 0.00 41.91 3.14
216 217 2.401990 CGAATACGCGGGTTTGCC 59.598 61.111 11.50 0.00 0.00 4.52
226 227 2.893404 CCCCAACCCGCGAATACG 60.893 66.667 8.23 0.00 42.93 3.06
227 228 1.816679 GACCCCAACCCGCGAATAC 60.817 63.158 8.23 0.00 0.00 1.89
228 229 1.839148 TTGACCCCAACCCGCGAATA 61.839 55.000 8.23 0.00 0.00 1.75
229 230 3.198953 TTGACCCCAACCCGCGAAT 62.199 57.895 8.23 0.00 0.00 3.34
230 231 3.835790 CTTGACCCCAACCCGCGAA 62.836 63.158 8.23 0.00 0.00 4.70
231 232 4.323477 CTTGACCCCAACCCGCGA 62.323 66.667 8.23 0.00 0.00 5.87
232 233 4.636435 ACTTGACCCCAACCCGCG 62.636 66.667 0.00 0.00 0.00 6.46
233 234 1.396607 AAAACTTGACCCCAACCCGC 61.397 55.000 0.00 0.00 0.00 6.13
234 235 1.116308 AAAAACTTGACCCCAACCCG 58.884 50.000 0.00 0.00 0.00 5.28
235 236 2.366266 GGTAAAAACTTGACCCCAACCC 59.634 50.000 0.00 0.00 0.00 4.11
236 237 2.034939 CGGTAAAAACTTGACCCCAACC 59.965 50.000 0.00 0.00 0.00 3.77
237 238 2.544277 GCGGTAAAAACTTGACCCCAAC 60.544 50.000 0.00 0.00 0.00 3.77
238 239 1.682323 GCGGTAAAAACTTGACCCCAA 59.318 47.619 0.00 0.00 0.00 4.12
239 240 1.320507 GCGGTAAAAACTTGACCCCA 58.679 50.000 0.00 0.00 0.00 4.96
240 241 0.239082 CGCGGTAAAAACTTGACCCC 59.761 55.000 0.00 0.00 0.00 4.95
241 242 0.386352 GCGCGGTAAAAACTTGACCC 60.386 55.000 8.83 0.00 0.00 4.46
242 243 0.386352 GGCGCGGTAAAAACTTGACC 60.386 55.000 8.83 0.00 0.00 4.02
243 244 0.386352 GGGCGCGGTAAAAACTTGAC 60.386 55.000 8.83 0.00 0.00 3.18
244 245 1.517210 GGGGCGCGGTAAAAACTTGA 61.517 55.000 8.83 0.00 0.00 3.02
245 246 1.081041 GGGGCGCGGTAAAAACTTG 60.081 57.895 8.83 0.00 0.00 3.16
246 247 1.228337 AGGGGCGCGGTAAAAACTT 60.228 52.632 8.83 0.00 0.00 2.66
247 248 1.673337 GAGGGGCGCGGTAAAAACT 60.673 57.895 8.83 0.00 0.00 2.66
248 249 1.517210 TTGAGGGGCGCGGTAAAAAC 61.517 55.000 8.83 0.00 0.00 2.43
249 250 0.822532 TTTGAGGGGCGCGGTAAAAA 60.823 50.000 8.83 0.00 0.00 1.94
250 251 0.822532 TTTTGAGGGGCGCGGTAAAA 60.823 50.000 8.83 2.04 0.00 1.52
251 252 0.609681 ATTTTGAGGGGCGCGGTAAA 60.610 50.000 8.83 0.00 0.00 2.01
252 253 0.609681 AATTTTGAGGGGCGCGGTAA 60.610 50.000 8.83 0.00 0.00 2.85
253 254 0.609681 AAATTTTGAGGGGCGCGGTA 60.610 50.000 8.83 0.00 0.00 4.02
254 255 1.468506 AAAATTTTGAGGGGCGCGGT 61.469 50.000 8.83 0.00 0.00 5.68
255 256 0.320334 AAAAATTTTGAGGGGCGCGG 60.320 50.000 8.83 0.00 0.00 6.46
256 257 3.209266 AAAAATTTTGAGGGGCGCG 57.791 47.368 0.00 0.00 0.00 6.86
283 284 3.977244 CACCCAGCAAACGTGGCC 61.977 66.667 8.68 0.00 33.24 5.36
284 285 4.645921 GCACCCAGCAAACGTGGC 62.646 66.667 4.40 4.40 44.79 5.01
285 286 4.326766 CGCACCCAGCAAACGTGG 62.327 66.667 0.00 0.00 46.13 4.94
286 287 4.326766 CCGCACCCAGCAAACGTG 62.327 66.667 0.00 0.00 46.13 4.49
289 290 1.815817 AAATCCCGCACCCAGCAAAC 61.816 55.000 0.00 0.00 46.13 2.93
290 291 1.118356 AAAATCCCGCACCCAGCAAA 61.118 50.000 0.00 0.00 46.13 3.68
291 292 1.531739 GAAAATCCCGCACCCAGCAA 61.532 55.000 0.00 0.00 46.13 3.91
292 293 1.976474 GAAAATCCCGCACCCAGCA 60.976 57.895 0.00 0.00 46.13 4.41
293 294 2.710902 GGAAAATCCCGCACCCAGC 61.711 63.158 0.00 0.00 40.87 4.85
294 295 1.304052 TGGAAAATCCCGCACCCAG 60.304 57.895 0.00 0.00 35.03 4.45
295 296 1.605165 GTGGAAAATCCCGCACCCA 60.605 57.895 0.00 0.00 35.03 4.51
296 297 1.605165 TGTGGAAAATCCCGCACCC 60.605 57.895 0.00 0.00 41.38 4.61
297 298 4.089105 TGTGGAAAATCCCGCACC 57.911 55.556 0.00 0.00 41.38 5.01
299 300 1.969064 CGGTGTGGAAAATCCCGCA 60.969 57.895 0.00 0.00 43.76 5.69
300 301 1.673009 TCGGTGTGGAAAATCCCGC 60.673 57.895 0.00 0.00 38.54 6.13
301 302 1.303091 GGTCGGTGTGGAAAATCCCG 61.303 60.000 0.00 0.00 35.03 5.14
302 303 0.963856 GGGTCGGTGTGGAAAATCCC 60.964 60.000 0.00 0.00 35.03 3.85
303 304 1.303091 CGGGTCGGTGTGGAAAATCC 61.303 60.000 0.00 0.00 36.96 3.01
304 305 1.918868 GCGGGTCGGTGTGGAAAATC 61.919 60.000 0.00 0.00 0.00 2.17
305 306 1.969589 GCGGGTCGGTGTGGAAAAT 60.970 57.895 0.00 0.00 0.00 1.82
306 307 2.592287 GCGGGTCGGTGTGGAAAA 60.592 61.111 0.00 0.00 0.00 2.29
307 308 2.684192 AATGCGGGTCGGTGTGGAAA 62.684 55.000 0.00 0.00 0.00 3.13
308 309 2.684192 AAATGCGGGTCGGTGTGGAA 62.684 55.000 0.00 0.00 0.00 3.53
309 310 2.684192 AAAATGCGGGTCGGTGTGGA 62.684 55.000 0.00 0.00 0.00 4.02
310 311 2.265182 AAAATGCGGGTCGGTGTGG 61.265 57.895 0.00 0.00 0.00 4.17
311 312 1.081509 CAAAATGCGGGTCGGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
312 313 1.228003 TCAAAATGCGGGTCGGTGT 60.228 52.632 0.00 0.00 0.00 4.16
313 314 1.209127 GTCAAAATGCGGGTCGGTG 59.791 57.895 0.00 0.00 0.00 4.94
314 315 1.228003 TGTCAAAATGCGGGTCGGT 60.228 52.632 0.00 0.00 0.00 4.69
315 316 1.234615 ACTGTCAAAATGCGGGTCGG 61.235 55.000 0.00 0.00 0.00 4.79
316 317 0.591170 AACTGTCAAAATGCGGGTCG 59.409 50.000 0.00 0.00 0.00 4.79
317 318 4.434713 AATAACTGTCAAAATGCGGGTC 57.565 40.909 0.00 0.00 0.00 4.46
318 319 4.864704 AAATAACTGTCAAAATGCGGGT 57.135 36.364 0.00 0.00 0.00 5.28
319 320 4.143137 GCAAAATAACTGTCAAAATGCGGG 60.143 41.667 0.00 0.00 0.00 6.13
320 321 4.447054 TGCAAAATAACTGTCAAAATGCGG 59.553 37.500 0.00 0.00 34.16 5.69
321 322 5.388682 CCTGCAAAATAACTGTCAAAATGCG 60.389 40.000 0.00 0.00 34.16 4.73
322 323 5.466393 ACCTGCAAAATAACTGTCAAAATGC 59.534 36.000 0.00 0.00 0.00 3.56
323 324 6.129115 CGACCTGCAAAATAACTGTCAAAATG 60.129 38.462 0.00 0.00 0.00 2.32
324 325 5.920273 CGACCTGCAAAATAACTGTCAAAAT 59.080 36.000 0.00 0.00 0.00 1.82
325 326 5.277825 CGACCTGCAAAATAACTGTCAAAA 58.722 37.500 0.00 0.00 0.00 2.44
326 327 4.261405 CCGACCTGCAAAATAACTGTCAAA 60.261 41.667 0.00 0.00 0.00 2.69
327 328 3.252215 CCGACCTGCAAAATAACTGTCAA 59.748 43.478 0.00 0.00 0.00 3.18
328 329 2.811431 CCGACCTGCAAAATAACTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
329 330 3.071479 TCCGACCTGCAAAATAACTGTC 58.929 45.455 0.00 0.00 0.00 3.51
330 331 2.812011 GTCCGACCTGCAAAATAACTGT 59.188 45.455 0.00 0.00 0.00 3.55
331 332 2.159707 CGTCCGACCTGCAAAATAACTG 60.160 50.000 0.00 0.00 0.00 3.16
332 333 2.073816 CGTCCGACCTGCAAAATAACT 58.926 47.619 0.00 0.00 0.00 2.24
333 334 1.802365 ACGTCCGACCTGCAAAATAAC 59.198 47.619 0.00 0.00 0.00 1.89
334 335 2.172851 ACGTCCGACCTGCAAAATAA 57.827 45.000 0.00 0.00 0.00 1.40
335 336 2.172851 AACGTCCGACCTGCAAAATA 57.827 45.000 0.00 0.00 0.00 1.40
336 337 1.314730 AAACGTCCGACCTGCAAAAT 58.685 45.000 0.00 0.00 0.00 1.82
337 338 1.096416 AAAACGTCCGACCTGCAAAA 58.904 45.000 0.00 0.00 0.00 2.44
338 339 0.378962 CAAAACGTCCGACCTGCAAA 59.621 50.000 0.00 0.00 0.00 3.68
339 340 2.018544 CAAAACGTCCGACCTGCAA 58.981 52.632 0.00 0.00 0.00 4.08
340 341 2.539338 GCAAAACGTCCGACCTGCA 61.539 57.895 0.00 0.00 0.00 4.41
341 342 2.251371 GCAAAACGTCCGACCTGC 59.749 61.111 0.00 0.00 0.00 4.85
342 343 2.549282 CGCAAAACGTCCGACCTG 59.451 61.111 0.00 0.00 36.87 4.00
343 344 2.663852 CCGCAAAACGTCCGACCT 60.664 61.111 0.00 0.00 41.42 3.85
344 345 3.719144 CCCGCAAAACGTCCGACC 61.719 66.667 0.00 0.00 41.42 4.79
345 346 3.719144 CCCCGCAAAACGTCCGAC 61.719 66.667 0.00 0.00 41.42 4.79
346 347 4.238654 ACCCCGCAAAACGTCCGA 62.239 61.111 0.00 0.00 41.42 4.55
347 348 3.719144 GACCCCGCAAAACGTCCG 61.719 66.667 0.00 0.00 41.42 4.79
348 349 2.281276 AGACCCCGCAAAACGTCC 60.281 61.111 0.00 0.00 41.42 4.79
349 350 2.943653 CAGACCCCGCAAAACGTC 59.056 61.111 0.00 0.00 41.42 4.34
350 351 2.386064 TAGCAGACCCCGCAAAACGT 62.386 55.000 0.00 0.00 41.42 3.99
351 352 1.635663 CTAGCAGACCCCGCAAAACG 61.636 60.000 0.00 0.00 43.15 3.60
352 353 0.321298 TCTAGCAGACCCCGCAAAAC 60.321 55.000 0.00 0.00 0.00 2.43
353 354 0.036388 CTCTAGCAGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
354 355 1.192146 ACTCTAGCAGACCCCGCAAA 61.192 55.000 0.00 0.00 0.00 3.68
355 356 1.192146 AACTCTAGCAGACCCCGCAA 61.192 55.000 0.00 0.00 0.00 4.85
356 357 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
357 358 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
358 359 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
359 360 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
360 361 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
361 362 4.664150 ATTAGAGCAACTCTAGCAGACC 57.336 45.455 4.64 0.00 42.92 3.85
362 363 7.221838 CAGTTTATTAGAGCAACTCTAGCAGAC 59.778 40.741 4.64 3.40 42.92 3.51
363 364 7.261325 CAGTTTATTAGAGCAACTCTAGCAGA 58.739 38.462 4.64 0.00 42.92 4.26
364 365 6.019156 GCAGTTTATTAGAGCAACTCTAGCAG 60.019 42.308 4.64 0.00 42.92 4.24
365 366 5.812642 GCAGTTTATTAGAGCAACTCTAGCA 59.187 40.000 4.64 0.00 42.92 3.49
366 367 5.812642 TGCAGTTTATTAGAGCAACTCTAGC 59.187 40.000 4.64 4.25 42.92 3.42
367 368 8.333908 CAATGCAGTTTATTAGAGCAACTCTAG 58.666 37.037 4.64 0.00 42.92 2.43
368 369 7.201644 GCAATGCAGTTTATTAGAGCAACTCTA 60.202 37.037 0.00 0.16 41.50 2.43
369 370 6.404074 GCAATGCAGTTTATTAGAGCAACTCT 60.404 38.462 0.00 2.23 43.83 3.24
370 371 5.741040 GCAATGCAGTTTATTAGAGCAACTC 59.259 40.000 0.00 0.00 38.85 3.01
371 372 5.644644 GCAATGCAGTTTATTAGAGCAACT 58.355 37.500 0.00 0.00 38.85 3.16
372 373 4.496895 CGCAATGCAGTTTATTAGAGCAAC 59.503 41.667 5.91 0.00 38.85 4.17
373 374 4.394610 TCGCAATGCAGTTTATTAGAGCAA 59.605 37.500 5.91 0.00 38.85 3.91
374 375 3.938334 TCGCAATGCAGTTTATTAGAGCA 59.062 39.130 5.91 0.00 39.79 4.26
375 376 4.536364 TCGCAATGCAGTTTATTAGAGC 57.464 40.909 5.91 0.00 0.00 4.09
376 377 6.111768 AGTTCGCAATGCAGTTTATTAGAG 57.888 37.500 5.91 0.00 0.00 2.43
379 380 4.856487 GCAAGTTCGCAATGCAGTTTATTA 59.144 37.500 5.91 0.00 39.81 0.98
437 440 1.153208 CCATCTGCTGCACTCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
438 441 1.818785 GCCATCTGCTGCACTCTCC 60.819 63.158 0.00 0.00 36.87 3.71
444 447 0.528924 GAAATGTGCCATCTGCTGCA 59.471 50.000 0.88 0.88 42.00 4.41
446 449 2.089201 TCAGAAATGTGCCATCTGCTG 58.911 47.619 0.00 0.00 40.26 4.41
447 450 2.502142 TCAGAAATGTGCCATCTGCT 57.498 45.000 0.00 0.00 40.26 4.24
448 451 3.444916 CATTCAGAAATGTGCCATCTGC 58.555 45.455 0.00 0.00 40.26 4.26
466 496 5.163642 GCATCAGATTGAGAAGCAGAACATT 60.164 40.000 0.00 0.00 0.00 2.71
467 497 4.335874 GCATCAGATTGAGAAGCAGAACAT 59.664 41.667 0.00 0.00 0.00 2.71
578 712 9.843334 CGAAAGAACAATATATACTACTCCCTC 57.157 37.037 0.00 0.00 0.00 4.30
579 713 9.364653 ACGAAAGAACAATATATACTACTCCCT 57.635 33.333 0.00 0.00 0.00 4.20
580 714 9.978044 AACGAAAGAACAATATATACTACTCCC 57.022 33.333 0.00 0.00 0.00 4.30
583 717 9.811995 TGCAACGAAAGAACAATATATACTACT 57.188 29.630 0.00 0.00 0.00 2.57
615 749 3.862267 CAGTCAACGGAAATTGCAAACAA 59.138 39.130 1.71 0.00 40.87 2.83
617 751 2.218530 GCAGTCAACGGAAATTGCAAAC 59.781 45.455 1.71 0.00 31.31 2.93
619 753 1.269517 GGCAGTCAACGGAAATTGCAA 60.270 47.619 0.00 0.00 32.09 4.08
764 906 7.494625 ACGACTGTATTTGACAATTCCGATATT 59.505 33.333 0.00 0.00 37.70 1.28
827 969 0.749454 GAGGAATTCGGTGCTGGCAT 60.749 55.000 0.00 0.00 0.00 4.40
862 1004 1.882989 GAGGAGACGCTGAGCTTGGT 61.883 60.000 1.78 0.00 0.00 3.67
951 1093 1.691196 CCTAGCTGCTCTGCTACTCT 58.309 55.000 4.91 0.00 43.74 3.24
952 1094 0.673437 CCCTAGCTGCTCTGCTACTC 59.327 60.000 4.91 0.00 43.74 2.59
953 1095 0.260230 TCCCTAGCTGCTCTGCTACT 59.740 55.000 4.91 0.00 43.74 2.57
954 1096 0.673437 CTCCCTAGCTGCTCTGCTAC 59.327 60.000 4.91 0.00 43.74 3.58
955 1097 0.553333 TCTCCCTAGCTGCTCTGCTA 59.447 55.000 4.91 7.96 43.74 3.49
956 1098 0.756442 CTCTCCCTAGCTGCTCTGCT 60.756 60.000 4.91 6.51 46.11 4.24
957 1099 1.741525 CTCTCCCTAGCTGCTCTGC 59.258 63.158 4.91 0.00 0.00 4.26
958 1100 0.106268 TCCTCTCCCTAGCTGCTCTG 60.106 60.000 4.91 0.00 0.00 3.35
996 1146 4.458829 TCGGCGGAGTCCATCCCT 62.459 66.667 10.49 0.00 46.50 4.20
1011 1161 1.040339 CCCTCTTCCTGGACCTCTCG 61.040 65.000 0.00 0.00 0.00 4.04
1132 1282 3.027170 GCTGAACACCGCCATCACG 62.027 63.158 0.00 0.00 0.00 4.35
1133 1283 2.870372 GCTGAACACCGCCATCAC 59.130 61.111 0.00 0.00 0.00 3.06
1134 1284 2.741985 CGCTGAACACCGCCATCA 60.742 61.111 0.00 0.00 0.00 3.07
1136 1286 2.434884 CTCGCTGAACACCGCCAT 60.435 61.111 0.00 0.00 0.00 4.40
1188 1362 2.685017 ACGATCAGCAGGAGGCCA 60.685 61.111 5.01 0.00 46.50 5.36
1212 1386 3.379445 TCCTCGTCCGGCCTTGTC 61.379 66.667 0.00 0.00 0.00 3.18
1394 1568 1.153329 TTGGTGGCGTTGTTCTCGT 60.153 52.632 0.00 0.00 0.00 4.18
1396 1570 0.951558 ATGTTGGTGGCGTTGTTCTC 59.048 50.000 0.00 0.00 0.00 2.87
1486 1660 1.408340 CATGGTGCTGTTGTTGGTGAA 59.592 47.619 0.00 0.00 0.00 3.18
1487 1661 1.031235 CATGGTGCTGTTGTTGGTGA 58.969 50.000 0.00 0.00 0.00 4.02
1550 2145 4.988598 CGCTGGCTTCCACGGTGT 62.989 66.667 7.45 0.00 0.00 4.16
1574 2169 3.309436 TTCTCGGCGATGGTGGTGG 62.309 63.158 11.27 0.00 0.00 4.61
1575 2170 1.811266 CTTCTCGGCGATGGTGGTG 60.811 63.158 11.27 0.00 0.00 4.17
1576 2171 1.541310 TTCTTCTCGGCGATGGTGGT 61.541 55.000 11.27 0.00 0.00 4.16
1577 2172 1.084370 GTTCTTCTCGGCGATGGTGG 61.084 60.000 11.27 0.00 0.00 4.61
1578 2173 1.413767 CGTTCTTCTCGGCGATGGTG 61.414 60.000 11.27 0.00 0.00 4.17
1579 2174 1.153823 CGTTCTTCTCGGCGATGGT 60.154 57.895 11.27 0.00 0.00 3.55
1580 2175 1.878522 CCGTTCTTCTCGGCGATGG 60.879 63.158 11.27 0.00 41.48 3.51
1581 2176 3.693245 CCGTTCTTCTCGGCGATG 58.307 61.111 11.27 4.92 41.48 3.84
1587 2182 2.427232 TGTTGGTACCGTTCTTCTCG 57.573 50.000 7.57 0.00 0.00 4.04
1588 2183 3.246936 GTGTTGTTGGTACCGTTCTTCTC 59.753 47.826 7.57 0.00 0.00 2.87
1589 2184 3.200483 GTGTTGTTGGTACCGTTCTTCT 58.800 45.455 7.57 0.00 0.00 2.85
1590 2185 2.288729 GGTGTTGTTGGTACCGTTCTTC 59.711 50.000 7.57 0.00 0.00 2.87
1591 2186 2.291365 GGTGTTGTTGGTACCGTTCTT 58.709 47.619 7.57 0.00 0.00 2.52
1592 2187 1.209990 TGGTGTTGTTGGTACCGTTCT 59.790 47.619 7.57 0.00 37.29 3.01
1593 2188 1.666054 TGGTGTTGTTGGTACCGTTC 58.334 50.000 7.57 0.57 37.29 3.95
1594 2189 2.351706 ATGGTGTTGTTGGTACCGTT 57.648 45.000 7.57 0.00 37.29 4.44
1595 2190 2.351706 AATGGTGTTGTTGGTACCGT 57.648 45.000 7.57 0.00 37.29 4.83
1902 2497 3.961477 TTGTTCTCGACAATGGTGTTG 57.039 42.857 0.00 0.00 43.13 3.33
1910 2505 2.388310 TGTGGTGTTGTTCTCGACAA 57.612 45.000 0.00 0.00 45.70 3.18
1911 2506 2.388310 TTGTGGTGTTGTTCTCGACA 57.612 45.000 0.00 0.00 35.80 4.35
1913 2508 2.701107 TGTTTGTGGTGTTGTTCTCGA 58.299 42.857 0.00 0.00 0.00 4.04
1916 2511 4.202161 TGTTGTTGTTTGTGGTGTTGTTCT 60.202 37.500 0.00 0.00 0.00 3.01
1929 2524 1.135228 GCTTCCACGGTGTTGTTGTTT 60.135 47.619 7.45 0.00 0.00 2.83
1931 2526 1.381165 GGCTTCCACGGTGTTGTTGT 61.381 55.000 7.45 0.00 0.00 3.32
1958 2592 2.970324 CGGTGTCGGTGGTGTTGG 60.970 66.667 0.00 0.00 0.00 3.77
1965 2599 4.351938 TTCTCGGCGGTGTCGGTG 62.352 66.667 7.21 0.00 36.79 4.94
1969 2603 2.087009 CGTTCTTCTCGGCGGTGTC 61.087 63.158 7.21 0.00 0.00 3.67
1970 2604 2.049433 CGTTCTTCTCGGCGGTGT 60.049 61.111 7.21 0.00 0.00 4.16
2000 2634 3.171277 GTGGCGTTATTCTTGACAATGC 58.829 45.455 0.00 0.00 34.21 3.56
2008 2642 2.952978 TGTTGTTGGTGGCGTTATTCTT 59.047 40.909 0.00 0.00 0.00 2.52
2013 2647 1.132643 GTGTTGTTGTTGGTGGCGTTA 59.867 47.619 0.00 0.00 0.00 3.18
2015 2649 1.509004 GTGTTGTTGTTGGTGGCGT 59.491 52.632 0.00 0.00 0.00 5.68
2016 2650 1.226831 GGTGTTGTTGTTGGTGGCG 60.227 57.895 0.00 0.00 0.00 5.69
2017 2651 1.226831 CGGTGTTGTTGTTGGTGGC 60.227 57.895 0.00 0.00 0.00 5.01
2018 2652 0.179150 CACGGTGTTGTTGTTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
2019 2653 0.179150 CCACGGTGTTGTTGTTGGTG 60.179 55.000 7.45 0.00 0.00 4.17
2020 2654 0.322636 TCCACGGTGTTGTTGTTGGT 60.323 50.000 7.45 0.00 0.00 3.67
2021 2655 0.811915 TTCCACGGTGTTGTTGTTGG 59.188 50.000 7.45 0.00 0.00 3.77
2022 2656 1.797348 GCTTCCACGGTGTTGTTGTTG 60.797 52.381 7.45 0.00 0.00 3.33
2023 2657 0.454196 GCTTCCACGGTGTTGTTGTT 59.546 50.000 7.45 0.00 0.00 2.83
2024 2658 1.381165 GGCTTCCACGGTGTTGTTGT 61.381 55.000 7.45 0.00 0.00 3.32
2025 2659 1.358759 GGCTTCCACGGTGTTGTTG 59.641 57.895 7.45 0.00 0.00 3.33
2026 2660 1.077357 TGGCTTCCACGGTGTTGTT 60.077 52.632 7.45 0.00 0.00 2.83
2027 2661 1.525995 CTGGCTTCCACGGTGTTGT 60.526 57.895 7.45 0.00 0.00 3.32
2028 2662 2.908073 GCTGGCTTCCACGGTGTTG 61.908 63.158 7.45 0.00 0.00 3.33
2029 2663 2.594592 GCTGGCTTCCACGGTGTT 60.595 61.111 7.45 0.00 0.00 3.32
2030 2664 4.988598 CGCTGGCTTCCACGGTGT 62.989 66.667 7.45 0.00 0.00 4.16
2113 2750 2.351276 GTCACCGGCATTCCCAGT 59.649 61.111 0.00 0.00 0.00 4.00
2114 2751 2.796483 TTCGTCACCGGCATTCCCAG 62.796 60.000 0.00 0.00 33.95 4.45
2115 2752 2.796483 CTTCGTCACCGGCATTCCCA 62.796 60.000 0.00 0.00 33.95 4.37
2125 2762 0.966920 TTCAGGTCTCCTTCGTCACC 59.033 55.000 0.00 0.00 0.00 4.02
2135 2772 1.067495 CCACGTTCCTCTTCAGGTCTC 60.067 57.143 0.00 0.00 41.28 3.36
2136 2773 0.969894 CCACGTTCCTCTTCAGGTCT 59.030 55.000 0.00 0.00 41.28 3.85
2209 2846 3.177228 GGAGGTCATATATGGCAGAGGT 58.823 50.000 18.65 0.00 33.08 3.85
2230 2867 2.072298 CCTGAGCTCTTCAAAGAACCG 58.928 52.381 16.19 0.00 34.81 4.44
2231 2868 1.809547 GCCTGAGCTCTTCAAAGAACC 59.190 52.381 16.19 0.00 34.81 3.62
2272 2909 1.901591 CAAAGCTGCAAGAGAAGGGA 58.098 50.000 1.02 0.00 34.07 4.20
2298 2936 7.186128 ACAAAATTCGCAAAATGGAAAGAAAC 58.814 30.769 0.00 0.00 0.00 2.78
2308 2946 4.057432 CTGGGTGACAAAATTCGCAAAAT 58.943 39.130 0.00 0.00 0.00 1.82
2312 2950 0.313672 GCTGGGTGACAAAATTCGCA 59.686 50.000 0.00 0.00 0.00 5.10
2313 2951 0.313672 TGCTGGGTGACAAAATTCGC 59.686 50.000 0.00 0.00 0.00 4.70
2315 2953 3.068024 TCTTGTGCTGGGTGACAAAATTC 59.932 43.478 0.00 0.00 31.83 2.17
2322 2960 0.819259 TTGCTCTTGTGCTGGGTGAC 60.819 55.000 0.00 0.00 0.00 3.67
2324 2962 1.102809 TGTTGCTCTTGTGCTGGGTG 61.103 55.000 0.00 0.00 0.00 4.61
2325 2963 0.178981 ATGTTGCTCTTGTGCTGGGT 60.179 50.000 0.00 0.00 0.00 4.51
2326 2964 1.825090 TATGTTGCTCTTGTGCTGGG 58.175 50.000 0.00 0.00 0.00 4.45
2330 2968 6.470235 GTGATGTTATTATGTTGCTCTTGTGC 59.530 38.462 0.00 0.00 0.00 4.57
2365 3003 1.299648 CAACGCCCCTGGATCAAGA 59.700 57.895 0.00 0.00 0.00 3.02
2448 3086 5.395657 CCAGCCTGTTATCTGTGATGAGTTA 60.396 44.000 0.00 0.00 0.00 2.24
2479 3117 3.272574 TGCATTGATTCCTGAGTCCTC 57.727 47.619 0.00 0.00 0.00 3.71
2487 3125 1.470098 GTCGCTGTTGCATTGATTCCT 59.530 47.619 0.00 0.00 39.64 3.36
2490 3128 1.608109 TGTGTCGCTGTTGCATTGATT 59.392 42.857 0.00 0.00 39.64 2.57
2492 3130 1.237533 ATGTGTCGCTGTTGCATTGA 58.762 45.000 0.00 0.00 39.64 2.57
2505 3143 1.062587 GCCGCATCTGTTGTATGTGTC 59.937 52.381 0.00 0.00 33.87 3.67
2515 3153 4.710167 TGCAGCAGCCGCATCTGT 62.710 61.111 0.00 0.00 42.27 3.41
2563 3201 8.494433 AGATATGCTTATTTCAGGAGGTAAACA 58.506 33.333 0.00 0.00 0.00 2.83
2581 3219 2.846206 TGAACCCAAGTCCAGATATGCT 59.154 45.455 0.00 0.00 0.00 3.79
2616 3254 2.165030 GCTGTTGATGAACCATTCCCAG 59.835 50.000 0.00 0.00 0.00 4.45
2629 3273 4.008330 CCTGAAGAGATGTTGCTGTTGAT 58.992 43.478 0.00 0.00 0.00 2.57
2642 3286 0.040942 AGAGCTGCCTCCTGAAGAGA 59.959 55.000 0.00 0.00 46.50 3.10
2814 3458 4.780021 TCTTCCTCCAATAGACTTTGCTCT 59.220 41.667 0.00 0.00 0.00 4.09
2855 3499 6.338214 TCTTCTCTAGCTCGCAATATCAAT 57.662 37.500 0.00 0.00 0.00 2.57
2929 3573 0.522286 TGCGTGTTGAGTTTTGCGTG 60.522 50.000 0.00 0.00 0.00 5.34
2931 3575 0.771756 CATGCGTGTTGAGTTTTGCG 59.228 50.000 0.00 0.00 0.00 4.85
2975 3628 2.023673 TCCAAGACCAAAGTTGTGCTG 58.976 47.619 0.00 0.00 0.00 4.41
3327 3980 4.347583 TGCCATGTTTCCTTTTGATTCCTT 59.652 37.500 0.00 0.00 0.00 3.36
3428 4081 6.839124 TTCTGACATTTGAATAAGTGCCAT 57.161 33.333 0.00 0.00 0.00 4.40
3643 4612 3.250762 TGTCCTTCTGAATTTTCTGCACG 59.749 43.478 0.00 0.00 0.00 5.34
3678 4647 2.700897 ACAAGTGCTGAGTACTTCACCT 59.299 45.455 13.08 5.24 36.42 4.00
3710 4682 4.373116 GGCTGCGTCGAACCCAGA 62.373 66.667 11.17 0.00 0.00 3.86
3739 4711 2.237392 AGGACCATACTCCTGCAAAGTC 59.763 50.000 4.75 0.00 39.40 3.01
3766 4738 1.000607 GGATTATACGAGGCTGCGTCA 60.001 52.381 20.67 4.17 44.39 4.35
3809 4781 1.488393 GACCCATTGCTAGAAGCTCCT 59.512 52.381 0.00 0.00 42.97 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.