Multiple sequence alignment - TraesCS3D01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G135200 chr3D 100.000 2545 0 0 1 2545 94446428 94448972 0.000000e+00 4700.0
1 TraesCS3D01G135200 chr3D 97.273 1797 28 4 753 2545 405843894 405845673 0.000000e+00 3027.0
2 TraesCS3D01G135200 chr3D 97.546 1752 31 5 753 2492 502027510 502025759 0.000000e+00 2987.0
3 TraesCS3D01G135200 chr3D 98.648 1553 14 2 753 2303 367348422 367349969 0.000000e+00 2745.0
4 TraesCS3D01G135200 chr3D 100.000 1397 0 0 3516 4912 94449943 94451339 0.000000e+00 2580.0
5 TraesCS3D01G135200 chr3D 97.476 1347 28 6 3572 4912 367351664 367353010 0.000000e+00 2294.0
6 TraesCS3D01G135200 chr3D 97.411 1043 14 2 3871 4912 502020388 502019358 0.000000e+00 1764.0
7 TraesCS3D01G135200 chr3D 98.687 838 10 1 4076 4912 405845987 405846824 0.000000e+00 1485.0
8 TraesCS3D01G135200 chr3D 98.417 758 11 1 1 757 488264285 488265042 0.000000e+00 1332.0
9 TraesCS3D01G135200 chr2D 96.913 1814 33 6 753 2545 601044223 601042412 0.000000e+00 3018.0
10 TraesCS3D01G135200 chr2D 96.171 1802 57 8 753 2545 158254998 158256796 0.000000e+00 2935.0
11 TraesCS3D01G135200 chr2D 98.697 1535 18 1 753 2285 537201592 537203126 0.000000e+00 2723.0
12 TraesCS3D01G135200 chr2D 96.143 1400 27 5 3516 4912 601042530 601041155 0.000000e+00 2261.0
13 TraesCS3D01G135200 chr2D 94.364 1384 38 11 3533 4912 360457778 360459125 0.000000e+00 2087.0
14 TraesCS3D01G135200 chr2D 93.388 242 14 2 2305 2545 601042604 601042364 1.680000e-94 357.0
15 TraesCS3D01G135200 chr2D 100.000 53 0 0 3516 3568 158258644 158258696 1.130000e-16 99.0
16 TraesCS3D01G135200 chr2D 89.474 76 8 0 3524 3599 2320544 2320469 4.050000e-16 97.1
17 TraesCS3D01G135200 chr2D 88.889 72 8 0 3524 3595 537203262 537203333 6.770000e-14 89.8
18 TraesCS3D01G135200 chr4D 97.346 1733 26 3 753 2465 480148009 480146277 0.000000e+00 2928.0
19 TraesCS3D01G135200 chr4D 97.176 1735 29 3 753 2468 41949072 41947339 0.000000e+00 2915.0
20 TraesCS3D01G135200 chr4D 96.085 1405 29 11 3516 4912 480145214 480143828 0.000000e+00 2266.0
21 TraesCS3D01G135200 chr4D 95.861 1353 27 7 3564 4912 41945796 41944469 0.000000e+00 2161.0
22 TraesCS3D01G135200 chr4D 96.054 1343 24 9 3575 4912 7011120 7009802 0.000000e+00 2159.0
23 TraesCS3D01G135200 chr4D 98.539 753 10 1 1 752 219299815 219300567 0.000000e+00 1328.0
24 TraesCS3D01G135200 chr4D 95.302 745 30 5 4170 4912 481102489 481103230 0.000000e+00 1177.0
25 TraesCS3D01G135200 chr6D 97.327 1721 41 4 753 2470 18601374 18603092 0.000000e+00 2918.0
26 TraesCS3D01G135200 chr6D 96.475 1390 34 4 3526 4912 18603569 18604946 0.000000e+00 2281.0
27 TraesCS3D01G135200 chr6D 98.805 753 8 1 1 752 288446989 288447741 0.000000e+00 1339.0
28 TraesCS3D01G135200 chr6D 98.539 753 10 1 1 752 140120544 140119792 0.000000e+00 1328.0
29 TraesCS3D01G135200 chr6D 98.539 753 10 1 1 752 402521796 402522548 0.000000e+00 1328.0
30 TraesCS3D01G135200 chr6D 95.338 665 20 3 1892 2545 400559824 400560488 0.000000e+00 1048.0
31 TraesCS3D01G135200 chr5D 98.648 1553 19 1 753 2303 156737989 156739541 0.000000e+00 2750.0
32 TraesCS3D01G135200 chr5D 96.236 1355 33 6 3575 4912 444165298 444166651 0.000000e+00 2204.0
33 TraesCS3D01G135200 chr5D 94.710 1380 50 12 3540 4912 156741010 156742373 0.000000e+00 2122.0
34 TraesCS3D01G135200 chr5D 98.805 753 8 1 1 752 164680382 164681134 0.000000e+00 1339.0
35 TraesCS3D01G135200 chr5D 95.620 685 16 3 4230 4912 38203258 38203930 0.000000e+00 1086.0
36 TraesCS3D01G135200 chr5D 84.740 308 34 10 2212 2515 38201200 38201498 3.720000e-76 296.0
37 TraesCS3D01G135200 chr7D 98.272 1505 23 3 1035 2537 105213525 105215028 0.000000e+00 2632.0
38 TraesCS3D01G135200 chr7D 94.885 1388 31 6 3529 4912 428975001 428973650 0.000000e+00 2134.0
39 TraesCS3D01G135200 chr7D 98.467 1174 15 3 3742 4912 1877769 1876596 0.000000e+00 2065.0
40 TraesCS3D01G135200 chr7D 98.505 736 11 0 1742 2477 1878605 1877870 0.000000e+00 1299.0
41 TraesCS3D01G135200 chr7D 93.834 746 42 4 4170 4912 116700115 116700859 0.000000e+00 1120.0
42 TraesCS3D01G135200 chr1D 98.672 753 9 1 1 752 44191377 44190625 0.000000e+00 1334.0
43 TraesCS3D01G135200 chr1D 98.672 753 9 1 1 752 132221497 132222249 0.000000e+00 1334.0
44 TraesCS3D01G135200 chr1D 98.539 753 10 1 1 752 132228297 132229049 0.000000e+00 1328.0
45 TraesCS3D01G135200 chr5A 89.908 109 11 0 3516 3624 561195974 561195866 1.840000e-29 141.0
46 TraesCS3D01G135200 chr7A 93.617 47 2 1 2499 2544 89131008 89131054 8.820000e-08 69.4
47 TraesCS3D01G135200 chr7A 91.892 37 3 0 2508 2544 89624122 89624086 9.000000e-03 52.8
48 TraesCS3D01G135200 chr3B 93.023 43 3 0 2502 2544 685991752 685991710 4.100000e-06 63.9
49 TraesCS3D01G135200 chr2A 100.000 28 0 0 2508 2535 5522116 5522143 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G135200 chr3D 94446428 94451339 4911 False 3640.000000 4700 100.000000 1 4912 2 chr3D.!!$F2 4911
1 TraesCS3D01G135200 chr3D 502025759 502027510 1751 True 2987.000000 2987 97.546000 753 2492 1 chr3D.!!$R2 1739
2 TraesCS3D01G135200 chr3D 367348422 367353010 4588 False 2519.500000 2745 98.062000 753 4912 2 chr3D.!!$F3 4159
3 TraesCS3D01G135200 chr3D 405843894 405846824 2930 False 2256.000000 3027 97.980000 753 4912 2 chr3D.!!$F4 4159
4 TraesCS3D01G135200 chr3D 502019358 502020388 1030 True 1764.000000 1764 97.411000 3871 4912 1 chr3D.!!$R1 1041
5 TraesCS3D01G135200 chr3D 488264285 488265042 757 False 1332.000000 1332 98.417000 1 757 1 chr3D.!!$F1 756
6 TraesCS3D01G135200 chr2D 360457778 360459125 1347 False 2087.000000 2087 94.364000 3533 4912 1 chr2D.!!$F1 1379
7 TraesCS3D01G135200 chr2D 601041155 601044223 3068 True 1878.666667 3018 95.481333 753 4912 3 chr2D.!!$R2 4159
8 TraesCS3D01G135200 chr2D 158254998 158258696 3698 False 1517.000000 2935 98.085500 753 3568 2 chr2D.!!$F2 2815
9 TraesCS3D01G135200 chr2D 537201592 537203333 1741 False 1406.400000 2723 93.793000 753 3595 2 chr2D.!!$F3 2842
10 TraesCS3D01G135200 chr4D 480143828 480148009 4181 True 2597.000000 2928 96.715500 753 4912 2 chr4D.!!$R3 4159
11 TraesCS3D01G135200 chr4D 41944469 41949072 4603 True 2538.000000 2915 96.518500 753 4912 2 chr4D.!!$R2 4159
12 TraesCS3D01G135200 chr4D 7009802 7011120 1318 True 2159.000000 2159 96.054000 3575 4912 1 chr4D.!!$R1 1337
13 TraesCS3D01G135200 chr4D 219299815 219300567 752 False 1328.000000 1328 98.539000 1 752 1 chr4D.!!$F1 751
14 TraesCS3D01G135200 chr4D 481102489 481103230 741 False 1177.000000 1177 95.302000 4170 4912 1 chr4D.!!$F2 742
15 TraesCS3D01G135200 chr6D 18601374 18604946 3572 False 2599.500000 2918 96.901000 753 4912 2 chr6D.!!$F4 4159
16 TraesCS3D01G135200 chr6D 288446989 288447741 752 False 1339.000000 1339 98.805000 1 752 1 chr6D.!!$F1 751
17 TraesCS3D01G135200 chr6D 140119792 140120544 752 True 1328.000000 1328 98.539000 1 752 1 chr6D.!!$R1 751
18 TraesCS3D01G135200 chr6D 402521796 402522548 752 False 1328.000000 1328 98.539000 1 752 1 chr6D.!!$F3 751
19 TraesCS3D01G135200 chr6D 400559824 400560488 664 False 1048.000000 1048 95.338000 1892 2545 1 chr6D.!!$F2 653
20 TraesCS3D01G135200 chr5D 156737989 156742373 4384 False 2436.000000 2750 96.679000 753 4912 2 chr5D.!!$F4 4159
21 TraesCS3D01G135200 chr5D 444165298 444166651 1353 False 2204.000000 2204 96.236000 3575 4912 1 chr5D.!!$F2 1337
22 TraesCS3D01G135200 chr5D 164680382 164681134 752 False 1339.000000 1339 98.805000 1 752 1 chr5D.!!$F1 751
23 TraesCS3D01G135200 chr5D 38201200 38203930 2730 False 691.000000 1086 90.180000 2212 4912 2 chr5D.!!$F3 2700
24 TraesCS3D01G135200 chr7D 105213525 105215028 1503 False 2632.000000 2632 98.272000 1035 2537 1 chr7D.!!$F1 1502
25 TraesCS3D01G135200 chr7D 428973650 428975001 1351 True 2134.000000 2134 94.885000 3529 4912 1 chr7D.!!$R1 1383
26 TraesCS3D01G135200 chr7D 1876596 1878605 2009 True 1682.000000 2065 98.486000 1742 4912 2 chr7D.!!$R2 3170
27 TraesCS3D01G135200 chr7D 116700115 116700859 744 False 1120.000000 1120 93.834000 4170 4912 1 chr7D.!!$F2 742
28 TraesCS3D01G135200 chr1D 44190625 44191377 752 True 1334.000000 1334 98.672000 1 752 1 chr1D.!!$R1 751
29 TraesCS3D01G135200 chr1D 132221497 132222249 752 False 1334.000000 1334 98.672000 1 752 1 chr1D.!!$F1 751
30 TraesCS3D01G135200 chr1D 132228297 132229049 752 False 1328.000000 1328 98.539000 1 752 1 chr1D.!!$F2 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 566 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.0 12.58 0.0 42.62 4.44 F
565 567 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.0 12.58 0.0 42.62 4.83 F
2440 4293 0.676782 CCGAGCCACCAAAACCCTAG 60.677 60.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 4298 0.035739 GACGGAACCACCTAAAGGCA 59.964 55.000 0.00 0.0 39.32 4.75 R
2449 4302 0.318120 GGTCGACGGAACCACCTAAA 59.682 55.000 9.92 0.0 36.31 1.85 R
4332 12761 1.219393 GAGGTGCTGGTAGAGGTGC 59.781 63.158 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.865745 ACGATGTCGAGGATTCAATCAAC 59.134 43.478 9.67 0.00 43.02 3.18
344 346 3.329520 AGTGCACCTTTATAGTCACCCAA 59.670 43.478 14.63 0.00 0.00 4.12
354 356 7.120138 CCTTTATAGTCACCCAATTACGTTGTT 59.880 37.037 0.00 0.00 36.01 2.83
408 410 1.167851 CGGGTGTTGCACAATCTCAT 58.832 50.000 1.61 0.00 35.86 2.90
409 411 1.135603 CGGGTGTTGCACAATCTCATG 60.136 52.381 1.61 0.00 35.86 3.07
410 412 1.203052 GGGTGTTGCACAATCTCATGG 59.797 52.381 0.00 0.00 35.86 3.66
411 413 1.888512 GGTGTTGCACAATCTCATGGT 59.111 47.619 0.00 0.00 35.86 3.55
412 414 2.095059 GGTGTTGCACAATCTCATGGTC 60.095 50.000 0.00 0.00 35.86 4.02
413 415 2.816087 GTGTTGCACAATCTCATGGTCT 59.184 45.455 0.00 0.00 34.08 3.85
414 416 4.002982 GTGTTGCACAATCTCATGGTCTA 58.997 43.478 0.00 0.00 34.08 2.59
415 417 4.455533 GTGTTGCACAATCTCATGGTCTAA 59.544 41.667 0.00 0.00 34.08 2.10
416 418 4.696877 TGTTGCACAATCTCATGGTCTAAG 59.303 41.667 0.00 0.00 0.00 2.18
417 419 3.877559 TGCACAATCTCATGGTCTAAGG 58.122 45.455 0.00 0.00 0.00 2.69
418 420 3.519107 TGCACAATCTCATGGTCTAAGGA 59.481 43.478 0.00 0.00 0.00 3.36
419 421 4.019411 TGCACAATCTCATGGTCTAAGGAA 60.019 41.667 0.00 0.00 0.00 3.36
420 422 4.333926 GCACAATCTCATGGTCTAAGGAAC 59.666 45.833 0.00 0.00 0.00 3.62
422 424 5.583854 CACAATCTCATGGTCTAAGGAACTG 59.416 44.000 0.00 0.00 40.86 3.16
423 425 5.485353 ACAATCTCATGGTCTAAGGAACTGA 59.515 40.000 0.00 0.00 40.86 3.41
424 426 6.157645 ACAATCTCATGGTCTAAGGAACTGAT 59.842 38.462 0.00 0.00 40.86 2.90
425 427 7.345653 ACAATCTCATGGTCTAAGGAACTGATA 59.654 37.037 0.00 0.00 40.86 2.15
426 428 6.716934 TCTCATGGTCTAAGGAACTGATAC 57.283 41.667 0.00 0.00 40.86 2.24
427 429 6.436027 TCTCATGGTCTAAGGAACTGATACT 58.564 40.000 0.00 0.00 40.86 2.12
428 430 6.897966 TCTCATGGTCTAAGGAACTGATACTT 59.102 38.462 0.00 0.00 40.86 2.24
429 431 6.878317 TCATGGTCTAAGGAACTGATACTTG 58.122 40.000 0.00 0.00 40.86 3.16
430 432 6.667848 TCATGGTCTAAGGAACTGATACTTGA 59.332 38.462 0.00 0.00 40.86 3.02
431 433 6.282199 TGGTCTAAGGAACTGATACTTGAC 57.718 41.667 0.00 0.00 40.86 3.18
432 434 5.778241 TGGTCTAAGGAACTGATACTTGACA 59.222 40.000 11.53 0.00 40.86 3.58
433 435 6.440647 TGGTCTAAGGAACTGATACTTGACAT 59.559 38.462 11.53 0.00 40.86 3.06
434 436 7.038302 TGGTCTAAGGAACTGATACTTGACATT 60.038 37.037 11.53 0.00 40.86 2.71
435 437 8.475639 GGTCTAAGGAACTGATACTTGACATTA 58.524 37.037 11.53 0.00 40.86 1.90
436 438 9.522804 GTCTAAGGAACTGATACTTGACATTAG 57.477 37.037 0.00 0.00 40.86 1.73
437 439 9.475620 TCTAAGGAACTGATACTTGACATTAGA 57.524 33.333 0.00 0.00 40.86 2.10
440 442 9.793259 AAGGAACTGATACTTGACATTAGAAAA 57.207 29.630 0.00 0.00 40.86 2.29
441 443 9.442047 AGGAACTGATACTTGACATTAGAAAAG 57.558 33.333 0.00 0.00 37.18 2.27
442 444 8.178313 GGAACTGATACTTGACATTAGAAAAGC 58.822 37.037 0.00 0.00 0.00 3.51
443 445 8.854614 AACTGATACTTGACATTAGAAAAGCT 57.145 30.769 0.00 0.00 0.00 3.74
444 446 8.485976 ACTGATACTTGACATTAGAAAAGCTC 57.514 34.615 0.00 0.00 0.00 4.09
445 447 8.317679 ACTGATACTTGACATTAGAAAAGCTCT 58.682 33.333 0.00 0.00 38.28 4.09
446 448 8.484641 TGATACTTGACATTAGAAAAGCTCTG 57.515 34.615 0.00 0.00 35.41 3.35
447 449 8.314021 TGATACTTGACATTAGAAAAGCTCTGA 58.686 33.333 0.00 0.00 35.41 3.27
448 450 8.715191 ATACTTGACATTAGAAAAGCTCTGAG 57.285 34.615 0.00 0.00 35.41 3.35
449 451 5.411053 ACTTGACATTAGAAAAGCTCTGAGC 59.589 40.000 21.72 21.72 42.84 4.26
450 452 4.898320 TGACATTAGAAAAGCTCTGAGCA 58.102 39.130 29.49 9.13 45.56 4.26
451 453 5.308014 TGACATTAGAAAAGCTCTGAGCAA 58.692 37.500 29.49 15.19 45.56 3.91
452 454 5.764686 TGACATTAGAAAAGCTCTGAGCAAA 59.235 36.000 29.49 14.16 45.56 3.68
453 455 6.006759 ACATTAGAAAAGCTCTGAGCAAAC 57.993 37.500 29.49 17.35 45.56 2.93
454 456 4.732285 TTAGAAAAGCTCTGAGCAAACG 57.268 40.909 29.49 0.00 45.56 3.60
455 457 2.838736 AGAAAAGCTCTGAGCAAACGA 58.161 42.857 29.49 0.00 45.56 3.85
456 458 3.206150 AGAAAAGCTCTGAGCAAACGAA 58.794 40.909 29.49 0.00 45.56 3.85
457 459 3.002759 AGAAAAGCTCTGAGCAAACGAAC 59.997 43.478 29.49 14.12 45.56 3.95
458 460 2.246719 AAGCTCTGAGCAAACGAACT 57.753 45.000 29.49 5.21 45.56 3.01
459 461 3.386768 AAGCTCTGAGCAAACGAACTA 57.613 42.857 29.49 0.00 45.56 2.24
460 462 2.678324 AGCTCTGAGCAAACGAACTAC 58.322 47.619 29.49 0.00 45.56 2.73
461 463 2.035961 AGCTCTGAGCAAACGAACTACA 59.964 45.455 29.49 0.00 45.56 2.74
462 464 2.155924 GCTCTGAGCAAACGAACTACAC 59.844 50.000 24.02 0.00 41.89 2.90
463 465 2.390938 TCTGAGCAAACGAACTACACG 58.609 47.619 0.00 0.00 0.00 4.49
464 466 2.033675 TCTGAGCAAACGAACTACACGA 59.966 45.455 0.00 0.00 34.70 4.35
465 467 2.987149 CTGAGCAAACGAACTACACGAT 59.013 45.455 0.00 0.00 34.70 3.73
466 468 2.984471 TGAGCAAACGAACTACACGATC 59.016 45.455 0.00 0.00 34.70 3.69
467 469 3.243336 GAGCAAACGAACTACACGATCT 58.757 45.455 0.00 0.00 34.70 2.75
468 470 3.650139 AGCAAACGAACTACACGATCTT 58.350 40.909 0.00 0.00 34.70 2.40
469 471 3.428870 AGCAAACGAACTACACGATCTTG 59.571 43.478 0.00 0.00 34.70 3.02
470 472 3.183775 GCAAACGAACTACACGATCTTGT 59.816 43.478 10.01 10.01 34.70 3.16
471 473 4.688063 CAAACGAACTACACGATCTTGTG 58.312 43.478 14.69 7.12 45.41 3.33
472 474 2.325761 ACGAACTACACGATCTTGTGC 58.674 47.619 14.69 1.64 43.74 4.57
473 475 2.030185 ACGAACTACACGATCTTGTGCT 60.030 45.455 14.69 0.00 43.74 4.40
474 476 3.189910 ACGAACTACACGATCTTGTGCTA 59.810 43.478 14.69 0.00 43.74 3.49
475 477 3.786576 CGAACTACACGATCTTGTGCTAG 59.213 47.826 14.69 7.03 43.74 3.42
476 478 3.784701 ACTACACGATCTTGTGCTAGG 57.215 47.619 14.69 3.20 43.74 3.02
477 479 2.159226 ACTACACGATCTTGTGCTAGGC 60.159 50.000 14.69 0.00 43.74 3.93
478 480 0.898320 ACACGATCTTGTGCTAGGCT 59.102 50.000 3.70 0.00 43.74 4.58
479 481 1.276421 ACACGATCTTGTGCTAGGCTT 59.724 47.619 3.70 0.00 43.74 4.35
480 482 2.496070 ACACGATCTTGTGCTAGGCTTA 59.504 45.455 3.70 0.00 43.74 3.09
481 483 3.119291 CACGATCTTGTGCTAGGCTTAG 58.881 50.000 0.00 0.00 32.31 2.18
482 484 2.101582 ACGATCTTGTGCTAGGCTTAGG 59.898 50.000 4.88 0.00 0.00 2.69
483 485 2.362397 CGATCTTGTGCTAGGCTTAGGA 59.638 50.000 4.88 0.00 0.00 2.94
484 486 3.006323 CGATCTTGTGCTAGGCTTAGGAT 59.994 47.826 4.88 0.00 29.47 3.24
485 487 4.502259 CGATCTTGTGCTAGGCTTAGGATT 60.502 45.833 4.88 0.00 29.47 3.01
486 488 4.142609 TCTTGTGCTAGGCTTAGGATTG 57.857 45.455 4.88 0.00 29.47 2.67
487 489 3.118261 TCTTGTGCTAGGCTTAGGATTGG 60.118 47.826 4.88 0.00 29.47 3.16
488 490 1.490490 TGTGCTAGGCTTAGGATTGGG 59.510 52.381 4.88 0.00 29.47 4.12
489 491 1.490910 GTGCTAGGCTTAGGATTGGGT 59.509 52.381 4.88 0.00 29.47 4.51
490 492 1.768870 TGCTAGGCTTAGGATTGGGTC 59.231 52.381 4.88 0.00 0.00 4.46
491 493 2.050918 GCTAGGCTTAGGATTGGGTCT 58.949 52.381 4.88 0.00 0.00 3.85
492 494 2.439880 GCTAGGCTTAGGATTGGGTCTT 59.560 50.000 4.88 0.00 0.00 3.01
493 495 3.745797 GCTAGGCTTAGGATTGGGTCTTG 60.746 52.174 4.88 0.00 0.00 3.02
494 496 2.279173 AGGCTTAGGATTGGGTCTTGT 58.721 47.619 0.00 0.00 0.00 3.16
495 497 2.239907 AGGCTTAGGATTGGGTCTTGTC 59.760 50.000 0.00 0.00 0.00 3.18
496 498 2.644676 GCTTAGGATTGGGTCTTGTCC 58.355 52.381 0.00 0.00 0.00 4.02
497 499 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
498 500 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
499 501 4.860022 CTTAGGATTGGGTCTTGTCCATT 58.140 43.478 0.00 0.00 33.82 3.16
500 502 5.631481 GCTTAGGATTGGGTCTTGTCCATTA 60.631 44.000 0.00 0.00 33.82 1.90
501 503 4.236527 AGGATTGGGTCTTGTCCATTAC 57.763 45.455 0.00 0.00 33.82 1.89
502 504 3.591527 AGGATTGGGTCTTGTCCATTACA 59.408 43.478 0.00 0.00 35.88 2.41
503 505 4.230502 AGGATTGGGTCTTGTCCATTACAT 59.769 41.667 0.00 0.00 38.10 2.29
504 506 4.580580 GGATTGGGTCTTGTCCATTACATC 59.419 45.833 0.00 0.00 38.10 3.06
505 507 4.649267 TTGGGTCTTGTCCATTACATCA 57.351 40.909 0.00 0.00 38.10 3.07
506 508 4.860802 TGGGTCTTGTCCATTACATCAT 57.139 40.909 0.00 0.00 38.10 2.45
507 509 5.191727 TGGGTCTTGTCCATTACATCATT 57.808 39.130 0.00 0.00 38.10 2.57
508 510 5.192927 TGGGTCTTGTCCATTACATCATTC 58.807 41.667 0.00 0.00 38.10 2.67
509 511 5.044919 TGGGTCTTGTCCATTACATCATTCT 60.045 40.000 0.00 0.00 38.10 2.40
510 512 5.529060 GGGTCTTGTCCATTACATCATTCTC 59.471 44.000 0.00 0.00 38.10 2.87
511 513 5.529060 GGTCTTGTCCATTACATCATTCTCC 59.471 44.000 0.00 0.00 38.10 3.71
512 514 6.352516 GTCTTGTCCATTACATCATTCTCCT 58.647 40.000 0.00 0.00 38.10 3.69
513 515 7.419057 GGTCTTGTCCATTACATCATTCTCCTA 60.419 40.741 0.00 0.00 38.10 2.94
514 516 7.987458 GTCTTGTCCATTACATCATTCTCCTAA 59.013 37.037 0.00 0.00 38.10 2.69
515 517 8.717717 TCTTGTCCATTACATCATTCTCCTAAT 58.282 33.333 0.00 0.00 38.10 1.73
516 518 8.681486 TTGTCCATTACATCATTCTCCTAATG 57.319 34.615 0.00 0.00 38.10 1.90
517 519 8.033178 TGTCCATTACATCATTCTCCTAATGA 57.967 34.615 3.13 3.13 40.50 2.57
518 520 8.663167 TGTCCATTACATCATTCTCCTAATGAT 58.337 33.333 7.28 7.28 45.40 2.45
526 528 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
527 529 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
528 530 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
529 531 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
530 532 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
531 533 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
532 534 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
533 535 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
534 536 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
535 537 6.147821 CCTAATGATGTGATCCCGTTATCAAC 59.852 42.308 0.00 0.00 37.61 3.18
557 559 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
558 560 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
559 561 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
560 562 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
561 563 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
562 564 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
563 565 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
564 566 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
565 567 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
566 568 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
567 569 1.979308 TCCATGGTCAGGAAACCGTAA 59.021 47.619 12.58 0.00 42.62 3.18
568 570 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
569 571 2.081462 CATGGTCAGGAAACCGTAACC 58.919 52.381 0.00 0.00 42.62 2.85
570 572 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
571 573 1.700739 TGGTCAGGAAACCGTAACCAT 59.299 47.619 0.00 0.00 42.62 3.55
572 574 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
573 575 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
574 576 3.196254 GGTCAGGAAACCGTAACCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
575 577 4.141779 GGTCAGGAAACCGTAACCATCTAT 60.142 45.833 0.00 0.00 0.00 1.98
576 578 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
577 579 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
578 580 5.188163 TCAGGAAACCGTAACCATCTATTGA 59.812 40.000 0.00 0.00 0.00 2.57
579 581 6.055588 CAGGAAACCGTAACCATCTATTGAT 58.944 40.000 0.00 0.00 0.00 2.57
580 582 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
581 583 6.053005 GGAAACCGTAACCATCTATTGATCA 58.947 40.000 0.00 0.00 0.00 2.92
582 584 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
583 585 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
584 586 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
585 587 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
586 588 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
587 589 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
588 590 4.679373 ACCATCTATTGATCAACGAGCT 57.321 40.909 11.07 0.00 0.00 4.09
589 591 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
590 592 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
591 593 5.303078 ACCATCTATTGATCAACGAGCTAGT 59.697 40.000 11.07 6.23 0.00 2.57
592 594 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
593 595 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
594 596 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
595 597 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
596 598 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
597 599 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
598 600 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
599 601 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
600 602 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
601 603 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
602 604 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
603 605 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
604 606 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
605 607 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
606 608 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
607 609 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
608 610 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
609 611 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
610 612 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
611 613 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
612 614 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
613 615 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
614 616 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
615 617 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
616 618 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
617 619 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
618 620 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
619 621 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
620 622 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
621 623 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
622 624 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
623 625 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
624 626 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
625 627 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
626 628 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
627 629 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
628 630 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
629 631 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
630 632 4.101114 AGGGACATGGTGTTGTCTATGTA 58.899 43.478 0.00 0.00 44.39 2.29
631 633 4.721776 AGGGACATGGTGTTGTCTATGTAT 59.278 41.667 0.00 0.00 44.39 2.29
632 634 5.057149 GGGACATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 44.39 2.24
633 635 5.057149 GGACATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 44.39 2.59
634 636 5.396324 GGACATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 44.39 3.41
635 637 5.428253 ACATGGTGTTGTCTATGTATCCAC 58.572 41.667 0.00 0.00 32.41 4.02
636 638 5.045942 ACATGGTGTTGTCTATGTATCCACA 60.046 40.000 0.00 0.00 39.52 4.17
637 639 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
638 640 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
639 641 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
640 642 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
641 643 5.874810 GTGTTGTCTATGTATCCACACATGT 59.125 40.000 0.00 0.00 39.46 3.21
642 644 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
643 645 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
644 646 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
645 647 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
646 648 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
647 649 7.505585 TGTCTATGTATCCACACATGTATCTGA 59.494 37.037 0.00 0.00 39.46 3.27
648 650 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
649 651 6.737720 ATGTATCCACACATGTATCTGAGT 57.262 37.500 0.00 0.00 37.74 3.41
650 652 6.544928 TGTATCCACACATGTATCTGAGTT 57.455 37.500 0.00 0.00 0.00 3.01
651 653 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
652 654 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
653 655 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
654 656 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
655 657 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
656 658 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
657 659 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
658 660 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
659 661 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
660 662 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
661 663 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
662 664 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
663 665 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
671 673 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
672 674 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
675 677 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
676 678 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41
677 679 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
686 688 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
687 689 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
751 753 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
863 865 7.253422 GCAGTGTTGCTCAATATTAAGTTCAT 58.747 34.615 0.00 0.00 46.95 2.57
1227 1231 4.760204 GGTACTGCCATGAACTAACTGTTT 59.240 41.667 0.00 0.00 36.71 2.83
1871 1875 8.163408 TCAAGGAAAACCATAATGAAGAGAAGA 58.837 33.333 0.00 0.00 0.00 2.87
2162 2167 6.149308 TGTGCATTTGAACTCCACTATGTAAG 59.851 38.462 0.00 0.00 0.00 2.34
2409 4262 5.468658 AGCCTAGATGATAGGTTTAGGTGT 58.531 41.667 3.05 0.00 37.06 4.16
2410 4263 5.905913 AGCCTAGATGATAGGTTTAGGTGTT 59.094 40.000 3.05 0.00 37.06 3.32
2411 4264 6.387220 AGCCTAGATGATAGGTTTAGGTGTTT 59.613 38.462 3.05 0.00 37.06 2.83
2412 4265 7.054751 GCCTAGATGATAGGTTTAGGTGTTTT 58.945 38.462 3.05 0.00 37.06 2.43
2413 4266 7.226918 GCCTAGATGATAGGTTTAGGTGTTTTC 59.773 40.741 3.05 0.00 37.06 2.29
2414 4267 7.438459 CCTAGATGATAGGTTTAGGTGTTTTCG 59.562 40.741 0.00 0.00 0.00 3.46
2415 4268 6.708285 AGATGATAGGTTTAGGTGTTTTCGT 58.292 36.000 0.00 0.00 0.00 3.85
2416 4269 6.817140 AGATGATAGGTTTAGGTGTTTTCGTC 59.183 38.462 0.00 0.00 0.00 4.20
2417 4270 5.240121 TGATAGGTTTAGGTGTTTTCGTCC 58.760 41.667 0.00 0.00 0.00 4.79
2418 4271 3.564053 AGGTTTAGGTGTTTTCGTCCA 57.436 42.857 0.00 0.00 0.00 4.02
2419 4272 3.208594 AGGTTTAGGTGTTTTCGTCCAC 58.791 45.455 0.00 0.00 0.00 4.02
2422 4275 3.754068 GGTGTTTTCGTCCACCCC 58.246 61.111 0.00 0.00 44.37 4.95
2423 4276 2.255881 GGTGTTTTCGTCCACCCCG 61.256 63.158 0.00 0.00 44.37 5.73
2424 4277 1.227615 GTGTTTTCGTCCACCCCGA 60.228 57.895 0.00 0.00 0.00 5.14
2425 4278 1.070105 TGTTTTCGTCCACCCCGAG 59.930 57.895 0.00 0.00 35.49 4.63
2426 4279 2.031465 TTTTCGTCCACCCCGAGC 59.969 61.111 0.00 0.00 35.49 5.03
2427 4280 3.540367 TTTTCGTCCACCCCGAGCC 62.540 63.158 0.00 0.00 35.49 4.70
2433 4286 4.278513 CCACCCCGAGCCACCAAA 62.279 66.667 0.00 0.00 0.00 3.28
2434 4287 2.203422 CACCCCGAGCCACCAAAA 60.203 61.111 0.00 0.00 0.00 2.44
2435 4288 2.203437 ACCCCGAGCCACCAAAAC 60.203 61.111 0.00 0.00 0.00 2.43
2436 4289 2.989253 CCCCGAGCCACCAAAACC 60.989 66.667 0.00 0.00 0.00 3.27
2437 4290 2.989253 CCCGAGCCACCAAAACCC 60.989 66.667 0.00 0.00 0.00 4.11
2438 4291 2.115266 CCGAGCCACCAAAACCCT 59.885 61.111 0.00 0.00 0.00 4.34
2439 4292 1.377229 CCGAGCCACCAAAACCCTA 59.623 57.895 0.00 0.00 0.00 3.53
2440 4293 0.676782 CCGAGCCACCAAAACCCTAG 60.677 60.000 0.00 0.00 0.00 3.02
2441 4294 0.036306 CGAGCCACCAAAACCCTAGT 59.964 55.000 0.00 0.00 0.00 2.57
2442 4295 1.544759 CGAGCCACCAAAACCCTAGTT 60.545 52.381 0.00 0.00 38.03 2.24
2443 4296 1.886542 GAGCCACCAAAACCCTAGTTG 59.113 52.381 0.00 0.00 35.97 3.16
2444 4297 1.497286 AGCCACCAAAACCCTAGTTGA 59.503 47.619 0.00 0.00 35.97 3.18
2445 4298 2.110011 AGCCACCAAAACCCTAGTTGAT 59.890 45.455 0.00 0.00 35.97 2.57
2446 4299 2.231235 GCCACCAAAACCCTAGTTGATG 59.769 50.000 0.00 0.00 35.97 3.07
2447 4300 2.231235 CCACCAAAACCCTAGTTGATGC 59.769 50.000 0.00 0.00 35.97 3.91
2448 4301 2.231235 CACCAAAACCCTAGTTGATGCC 59.769 50.000 0.00 0.00 35.97 4.40
2449 4302 2.110011 ACCAAAACCCTAGTTGATGCCT 59.890 45.455 0.00 0.00 35.97 4.75
2450 4303 3.165071 CCAAAACCCTAGTTGATGCCTT 58.835 45.455 0.00 0.00 35.97 4.35
2451 4304 3.578282 CCAAAACCCTAGTTGATGCCTTT 59.422 43.478 0.00 0.00 35.97 3.11
2452 4305 4.770010 CCAAAACCCTAGTTGATGCCTTTA 59.230 41.667 0.00 0.00 35.97 1.85
2453 4306 5.105756 CCAAAACCCTAGTTGATGCCTTTAG 60.106 44.000 0.00 0.00 35.97 1.85
2454 4307 3.933861 ACCCTAGTTGATGCCTTTAGG 57.066 47.619 0.00 0.00 38.53 2.69
2455 4308 3.190439 ACCCTAGTTGATGCCTTTAGGT 58.810 45.455 0.00 0.00 37.57 3.08
2456 4309 3.054361 ACCCTAGTTGATGCCTTTAGGTG 60.054 47.826 0.00 0.00 37.57 4.00
2457 4310 3.545703 CCTAGTTGATGCCTTTAGGTGG 58.454 50.000 0.00 0.00 37.57 4.61
2460 4313 3.421844 AGTTGATGCCTTTAGGTGGTTC 58.578 45.455 0.00 0.00 37.57 3.62
2465 4318 1.017701 GCCTTTAGGTGGTTCCGTCG 61.018 60.000 0.00 0.00 41.99 5.12
2470 4323 4.729856 GGTGGTTCCGTCGACCCG 62.730 72.222 10.58 0.00 36.30 5.28
2484 4337 3.155167 CCCGGAGCCACCCTAGAC 61.155 72.222 0.73 0.00 34.64 2.59
3812 12023 9.409312 CAATATATCTAGCAACAGAGTTCTCTG 57.591 37.037 23.12 23.12 43.03 3.35
3938 12164 3.210232 AGCAAGATCACATCCATCCAG 57.790 47.619 0.00 0.00 0.00 3.86
4109 12452 7.016563 AGCAAGATCACATTGTACCATAGGATA 59.983 37.037 0.00 0.00 0.00 2.59
4501 13039 3.122150 TGCTTGTGTAGTAGCAGCG 57.878 52.632 0.00 0.00 42.12 5.18
4636 13178 5.181245 AGGATTACCACATGTTTGTTCTTCG 59.819 40.000 0.00 0.00 38.94 3.79
4693 13235 2.665649 TGTGTACCTATGTCCTTGCG 57.334 50.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.881089 GACAAAGGGAATTGTATACGGGG 59.119 47.826 0.00 0.00 43.31 5.73
344 346 3.311871 TGCACCAAACGTAACAACGTAAT 59.688 39.130 3.77 0.00 46.41 1.89
408 410 5.778241 TGTCAAGTATCAGTTCCTTAGACCA 59.222 40.000 0.00 0.00 0.00 4.02
409 411 6.282199 TGTCAAGTATCAGTTCCTTAGACC 57.718 41.667 0.00 0.00 0.00 3.85
410 412 9.522804 CTAATGTCAAGTATCAGTTCCTTAGAC 57.477 37.037 0.00 0.00 0.00 2.59
411 413 9.475620 TCTAATGTCAAGTATCAGTTCCTTAGA 57.524 33.333 0.00 0.00 0.00 2.10
414 416 9.793259 TTTTCTAATGTCAAGTATCAGTTCCTT 57.207 29.630 0.00 0.00 0.00 3.36
415 417 9.442047 CTTTTCTAATGTCAAGTATCAGTTCCT 57.558 33.333 0.00 0.00 0.00 3.36
416 418 8.178313 GCTTTTCTAATGTCAAGTATCAGTTCC 58.822 37.037 0.00 0.00 0.00 3.62
417 419 8.940952 AGCTTTTCTAATGTCAAGTATCAGTTC 58.059 33.333 0.00 0.00 0.00 3.01
418 420 8.854614 AGCTTTTCTAATGTCAAGTATCAGTT 57.145 30.769 0.00 0.00 0.00 3.16
419 421 8.317679 AGAGCTTTTCTAATGTCAAGTATCAGT 58.682 33.333 0.00 0.00 33.23 3.41
420 422 8.602328 CAGAGCTTTTCTAATGTCAAGTATCAG 58.398 37.037 0.00 0.00 33.83 2.90
421 423 8.314021 TCAGAGCTTTTCTAATGTCAAGTATCA 58.686 33.333 0.00 0.00 33.83 2.15
422 424 8.709386 TCAGAGCTTTTCTAATGTCAAGTATC 57.291 34.615 0.00 0.00 33.83 2.24
423 425 7.279758 GCTCAGAGCTTTTCTAATGTCAAGTAT 59.720 37.037 15.78 0.00 38.45 2.12
424 426 6.591834 GCTCAGAGCTTTTCTAATGTCAAGTA 59.408 38.462 15.78 0.00 38.45 2.24
425 427 5.411053 GCTCAGAGCTTTTCTAATGTCAAGT 59.589 40.000 15.78 0.00 38.45 3.16
426 428 5.410746 TGCTCAGAGCTTTTCTAATGTCAAG 59.589 40.000 23.15 0.00 42.97 3.02
427 429 5.308014 TGCTCAGAGCTTTTCTAATGTCAA 58.692 37.500 23.15 0.00 42.97 3.18
428 430 4.898320 TGCTCAGAGCTTTTCTAATGTCA 58.102 39.130 23.15 0.00 42.97 3.58
429 431 5.869753 TTGCTCAGAGCTTTTCTAATGTC 57.130 39.130 23.15 0.00 42.97 3.06
430 432 5.334414 CGTTTGCTCAGAGCTTTTCTAATGT 60.334 40.000 23.15 0.00 42.97 2.71
431 433 5.084722 CGTTTGCTCAGAGCTTTTCTAATG 58.915 41.667 23.15 9.11 42.97 1.90
432 434 4.997395 TCGTTTGCTCAGAGCTTTTCTAAT 59.003 37.500 23.15 0.00 42.97 1.73
433 435 4.377021 TCGTTTGCTCAGAGCTTTTCTAA 58.623 39.130 23.15 5.26 42.97 2.10
434 436 3.990092 TCGTTTGCTCAGAGCTTTTCTA 58.010 40.909 23.15 0.00 42.97 2.10
435 437 2.838736 TCGTTTGCTCAGAGCTTTTCT 58.161 42.857 23.15 0.00 42.97 2.52
436 438 3.002759 AGTTCGTTTGCTCAGAGCTTTTC 59.997 43.478 23.15 9.98 42.97 2.29
437 439 2.945668 AGTTCGTTTGCTCAGAGCTTTT 59.054 40.909 23.15 0.00 42.97 2.27
438 440 2.565841 AGTTCGTTTGCTCAGAGCTTT 58.434 42.857 23.15 0.00 42.97 3.51
439 441 2.246719 AGTTCGTTTGCTCAGAGCTT 57.753 45.000 23.15 0.00 42.97 3.74
440 442 2.035961 TGTAGTTCGTTTGCTCAGAGCT 59.964 45.455 23.15 2.91 42.97 4.09
441 443 2.155924 GTGTAGTTCGTTTGCTCAGAGC 59.844 50.000 16.21 16.21 42.82 4.09
442 444 2.405357 CGTGTAGTTCGTTTGCTCAGAG 59.595 50.000 0.00 0.00 0.00 3.35
443 445 2.033675 TCGTGTAGTTCGTTTGCTCAGA 59.966 45.455 0.00 0.00 0.00 3.27
444 446 2.390938 TCGTGTAGTTCGTTTGCTCAG 58.609 47.619 0.00 0.00 0.00 3.35
445 447 2.495409 TCGTGTAGTTCGTTTGCTCA 57.505 45.000 0.00 0.00 0.00 4.26
446 448 3.243336 AGATCGTGTAGTTCGTTTGCTC 58.757 45.455 0.00 0.00 0.00 4.26
447 449 3.299340 AGATCGTGTAGTTCGTTTGCT 57.701 42.857 0.00 0.00 0.00 3.91
448 450 3.183775 ACAAGATCGTGTAGTTCGTTTGC 59.816 43.478 12.88 0.00 0.00 3.68
449 451 4.688063 CACAAGATCGTGTAGTTCGTTTG 58.312 43.478 14.10 0.00 32.00 2.93
450 452 3.183775 GCACAAGATCGTGTAGTTCGTTT 59.816 43.478 14.10 0.00 39.19 3.60
451 453 2.729882 GCACAAGATCGTGTAGTTCGTT 59.270 45.455 14.10 0.00 39.19 3.85
452 454 2.030185 AGCACAAGATCGTGTAGTTCGT 60.030 45.455 14.10 0.00 39.19 3.85
453 455 2.596452 AGCACAAGATCGTGTAGTTCG 58.404 47.619 14.10 3.06 39.19 3.95
454 456 4.106197 CCTAGCACAAGATCGTGTAGTTC 58.894 47.826 14.10 4.56 39.19 3.01
455 457 3.676324 GCCTAGCACAAGATCGTGTAGTT 60.676 47.826 14.10 9.24 39.19 2.24
456 458 2.159226 GCCTAGCACAAGATCGTGTAGT 60.159 50.000 14.10 7.07 39.19 2.73
457 459 2.099921 AGCCTAGCACAAGATCGTGTAG 59.900 50.000 14.10 8.32 39.19 2.74
458 460 2.100197 AGCCTAGCACAAGATCGTGTA 58.900 47.619 14.10 0.00 39.19 2.90
459 461 0.898320 AGCCTAGCACAAGATCGTGT 59.102 50.000 8.60 8.60 39.19 4.49
460 462 2.015736 AAGCCTAGCACAAGATCGTG 57.984 50.000 7.13 7.13 40.00 4.35
461 463 2.101582 CCTAAGCCTAGCACAAGATCGT 59.898 50.000 0.00 0.00 0.00 3.73
462 464 2.362397 TCCTAAGCCTAGCACAAGATCG 59.638 50.000 0.00 0.00 0.00 3.69
463 465 4.615588 ATCCTAAGCCTAGCACAAGATC 57.384 45.455 0.00 0.00 0.00 2.75
464 466 4.445448 CCAATCCTAAGCCTAGCACAAGAT 60.445 45.833 0.00 0.00 0.00 2.40
465 467 3.118261 CCAATCCTAAGCCTAGCACAAGA 60.118 47.826 0.00 0.00 0.00 3.02
466 468 3.209410 CCAATCCTAAGCCTAGCACAAG 58.791 50.000 0.00 0.00 0.00 3.16
467 469 2.092429 CCCAATCCTAAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
468 470 1.490490 CCCAATCCTAAGCCTAGCACA 59.510 52.381 0.00 0.00 0.00 4.57
469 471 1.490910 ACCCAATCCTAAGCCTAGCAC 59.509 52.381 0.00 0.00 0.00 4.40
470 472 1.768870 GACCCAATCCTAAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
471 473 2.050918 AGACCCAATCCTAAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
472 474 3.456277 ACAAGACCCAATCCTAAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
473 475 3.454812 GACAAGACCCAATCCTAAGCCTA 59.545 47.826 0.00 0.00 0.00 3.93
474 476 2.239907 GACAAGACCCAATCCTAAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
475 477 2.644676 GACAAGACCCAATCCTAAGCC 58.355 52.381 0.00 0.00 0.00 4.35
476 478 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
477 479 4.510167 ATGGACAAGACCCAATCCTAAG 57.490 45.455 0.00 0.00 37.22 2.18
478 480 4.946160 AATGGACAAGACCCAATCCTAA 57.054 40.909 0.00 0.00 37.22 2.69
479 481 4.785914 TGTAATGGACAAGACCCAATCCTA 59.214 41.667 0.00 0.00 37.22 2.94
480 482 3.591527 TGTAATGGACAAGACCCAATCCT 59.408 43.478 0.00 0.00 37.22 3.24
481 483 3.963129 TGTAATGGACAAGACCCAATCC 58.037 45.455 0.00 0.00 37.22 3.01
482 484 5.192927 TGATGTAATGGACAAGACCCAATC 58.807 41.667 0.00 0.00 42.78 2.67
483 485 5.191727 TGATGTAATGGACAAGACCCAAT 57.808 39.130 0.00 0.00 42.78 3.16
484 486 4.649267 TGATGTAATGGACAAGACCCAA 57.351 40.909 0.00 0.00 42.78 4.12
485 487 4.860802 ATGATGTAATGGACAAGACCCA 57.139 40.909 0.00 0.00 42.78 4.51
486 488 5.440610 AGAATGATGTAATGGACAAGACCC 58.559 41.667 0.00 0.00 42.78 4.46
487 489 5.529060 GGAGAATGATGTAATGGACAAGACC 59.471 44.000 0.00 0.00 42.78 3.85
488 490 6.352516 AGGAGAATGATGTAATGGACAAGAC 58.647 40.000 0.00 0.00 42.78 3.01
489 491 6.566079 AGGAGAATGATGTAATGGACAAGA 57.434 37.500 0.00 0.00 42.78 3.02
490 492 8.781196 CATTAGGAGAATGATGTAATGGACAAG 58.219 37.037 0.00 0.00 42.78 3.16
491 493 8.493607 TCATTAGGAGAATGATGTAATGGACAA 58.506 33.333 0.00 0.00 42.78 3.18
492 494 8.033178 TCATTAGGAGAATGATGTAATGGACA 57.967 34.615 0.00 0.00 43.97 4.02
502 504 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
503 505 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
504 506 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
505 507 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
506 508 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
507 509 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
508 510 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
509 511 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
510 512 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
511 513 7.121974 GTTGATAACGGGATCACATCATTAG 57.878 40.000 0.00 0.00 35.56 1.73
538 540 2.092267 TCCTGACCATGGACATTGGATG 60.092 50.000 21.47 5.31 0.00 3.51
539 541 2.207988 TCCTGACCATGGACATTGGAT 58.792 47.619 21.47 0.00 0.00 3.41
540 542 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
541 543 2.493278 GTTTCCTGACCATGGACATTGG 59.507 50.000 21.47 16.85 32.65 3.16
542 544 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
543 545 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
544 546 1.340017 CGGTTTCCTGACCATGGACAT 60.340 52.381 21.47 0.00 39.78 3.06
545 547 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
546 548 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
547 549 1.646912 TACGGTTTCCTGACCATGGA 58.353 50.000 21.47 0.00 39.78 3.41
548 550 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
549 551 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
550 552 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
551 553 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
552 554 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
553 555 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
554 556 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
555 557 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
556 558 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
557 559 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
558 560 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
559 561 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
560 562 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
561 563 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
562 564 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
563 565 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
564 566 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
565 567 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
566 568 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
567 569 4.679373 AGCTCGTTGATCAATAGATGGT 57.321 40.909 19.51 14.02 33.72 3.55
568 570 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
569 571 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
570 572 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
571 573 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
572 574 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
573 575 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
574 576 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
575 577 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
576 578 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
577 579 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
578 580 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
579 581 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
580 582 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
581 583 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
582 584 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
583 585 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
584 586 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
585 587 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
586 588 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
587 589 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
588 590 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
589 591 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
590 592 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
591 593 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
592 594 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
593 595 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
594 596 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
595 597 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
596 598 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
597 599 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
598 600 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
599 601 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
600 602 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
601 603 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
602 604 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
603 605 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
609 611 8.319752 TGGATACATAGACAACACCATGTCCC 62.320 46.154 3.95 0.00 46.44 4.46
610 612 5.396324 TGGATACATAGACAACACCATGTCC 60.396 44.000 3.95 0.00 46.44 4.02
611 613 5.670485 TGGATACATAGACAACACCATGTC 58.330 41.667 0.00 0.00 45.97 3.06
612 614 5.692115 TGGATACATAGACAACACCATGT 57.308 39.130 0.00 0.00 46.17 3.21
628 630 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
629 631 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
630 632 5.190528 AGGAAACTCAGATACATGTGTGGAT 59.809 40.000 9.11 0.00 32.90 3.41
631 633 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
632 634 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
633 635 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
634 636 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
635 637 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
636 638 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
637 639 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
645 647 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
646 648 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
649 651 9.288576 CCATGCTAGAATTGTATTGATAGGAAA 57.711 33.333 0.00 0.00 0.00 3.13
650 652 8.659527 TCCATGCTAGAATTGTATTGATAGGAA 58.340 33.333 0.00 0.00 0.00 3.36
651 653 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
660 662 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
661 663 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
730 732 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
731 733 6.966534 AATTGTTGGAAATATGCCCTAGAG 57.033 37.500 0.00 0.00 0.00 2.43
735 737 9.212593 ACTTAATAATTGTTGGAAATATGCCCT 57.787 29.630 0.00 0.00 0.00 5.19
736 738 9.830975 AACTTAATAATTGTTGGAAATATGCCC 57.169 29.630 0.00 0.00 0.00 5.36
763 765 6.832520 TTTTAGCAGAAATGCATTCCACTA 57.167 33.333 13.38 9.47 38.94 2.74
863 865 2.819608 GCAATTGACTAACTGGCTCCAA 59.180 45.455 10.34 0.00 0.00 3.53
941 945 4.510571 ACTACTTTGCCCACCTAAATACG 58.489 43.478 0.00 0.00 0.00 3.06
1871 1875 9.160496 CTCAGTAATCTTAAACTCTTGCATCTT 57.840 33.333 0.00 0.00 0.00 2.40
2162 2167 5.105635 ACATCCATTGTTCACATTGATCACC 60.106 40.000 0.00 0.00 33.74 4.02
2409 4262 2.031465 GCTCGGGGTGGACGAAAA 59.969 61.111 0.00 0.00 40.16 2.29
2410 4263 4.011517 GGCTCGGGGTGGACGAAA 62.012 66.667 0.00 0.00 40.16 3.46
2416 4269 3.801068 TTTTGGTGGCTCGGGGTGG 62.801 63.158 0.00 0.00 0.00 4.61
2417 4270 2.203422 TTTTGGTGGCTCGGGGTG 60.203 61.111 0.00 0.00 0.00 4.61
2418 4271 2.203437 GTTTTGGTGGCTCGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
2419 4272 2.989253 GGTTTTGGTGGCTCGGGG 60.989 66.667 0.00 0.00 0.00 5.73
2420 4273 2.132089 TAGGGTTTTGGTGGCTCGGG 62.132 60.000 0.00 0.00 0.00 5.14
2421 4274 0.676782 CTAGGGTTTTGGTGGCTCGG 60.677 60.000 0.00 0.00 0.00 4.63
2422 4275 0.036306 ACTAGGGTTTTGGTGGCTCG 59.964 55.000 0.00 0.00 0.00 5.03
2423 4276 1.886542 CAACTAGGGTTTTGGTGGCTC 59.113 52.381 0.00 0.00 32.73 4.70
2424 4277 1.497286 TCAACTAGGGTTTTGGTGGCT 59.503 47.619 0.00 0.00 32.73 4.75
2425 4278 1.989706 TCAACTAGGGTTTTGGTGGC 58.010 50.000 0.00 0.00 32.73 5.01
2426 4279 2.231235 GCATCAACTAGGGTTTTGGTGG 59.769 50.000 6.29 0.00 34.86 4.61
2427 4280 2.231235 GGCATCAACTAGGGTTTTGGTG 59.769 50.000 0.00 0.00 36.98 4.17
2428 4281 2.110011 AGGCATCAACTAGGGTTTTGGT 59.890 45.455 0.00 0.00 32.73 3.67
2429 4282 2.807676 AGGCATCAACTAGGGTTTTGG 58.192 47.619 0.00 0.00 32.73 3.28
2430 4283 4.871933 AAAGGCATCAACTAGGGTTTTG 57.128 40.909 0.00 0.00 32.73 2.44
2431 4284 5.016831 CCTAAAGGCATCAACTAGGGTTTT 58.983 41.667 0.00 0.00 32.73 2.43
2432 4285 4.044191 ACCTAAAGGCATCAACTAGGGTTT 59.956 41.667 0.00 0.00 39.32 3.27
2433 4286 3.591977 ACCTAAAGGCATCAACTAGGGTT 59.408 43.478 0.00 0.00 39.32 4.11
2434 4287 3.054361 CACCTAAAGGCATCAACTAGGGT 60.054 47.826 0.00 0.00 39.32 4.34
2435 4288 3.545703 CACCTAAAGGCATCAACTAGGG 58.454 50.000 0.00 0.00 39.32 3.53
2436 4289 3.054361 ACCACCTAAAGGCATCAACTAGG 60.054 47.826 0.00 0.00 39.32 3.02
2437 4290 4.222124 ACCACCTAAAGGCATCAACTAG 57.778 45.455 0.00 0.00 39.32 2.57
2438 4291 4.566907 GGAACCACCTAAAGGCATCAACTA 60.567 45.833 0.00 0.00 39.32 2.24
2439 4292 3.421844 GAACCACCTAAAGGCATCAACT 58.578 45.455 0.00 0.00 39.32 3.16
2440 4293 2.492088 GGAACCACCTAAAGGCATCAAC 59.508 50.000 0.00 0.00 39.32 3.18
2441 4294 2.802719 GGAACCACCTAAAGGCATCAA 58.197 47.619 0.00 0.00 39.32 2.57
2442 4295 1.339631 CGGAACCACCTAAAGGCATCA 60.340 52.381 0.00 0.00 39.32 3.07
2443 4296 1.339727 ACGGAACCACCTAAAGGCATC 60.340 52.381 0.00 0.00 39.32 3.91
2444 4297 0.696501 ACGGAACCACCTAAAGGCAT 59.303 50.000 0.00 0.00 39.32 4.40
2445 4298 0.035739 GACGGAACCACCTAAAGGCA 59.964 55.000 0.00 0.00 39.32 4.75
2446 4299 1.017701 CGACGGAACCACCTAAAGGC 61.018 60.000 0.00 0.00 39.32 4.35
2447 4300 0.604578 TCGACGGAACCACCTAAAGG 59.395 55.000 0.00 0.00 42.17 3.11
2448 4301 1.670967 GGTCGACGGAACCACCTAAAG 60.671 57.143 9.92 0.00 36.31 1.85
2449 4302 0.318120 GGTCGACGGAACCACCTAAA 59.682 55.000 9.92 0.00 36.31 1.85
2450 4303 1.966762 GGTCGACGGAACCACCTAA 59.033 57.895 9.92 0.00 36.31 2.69
2451 4304 3.685435 GGTCGACGGAACCACCTA 58.315 61.111 9.92 0.00 36.31 3.08
2465 4318 3.155167 CTAGGGTGGCTCCGGGTC 61.155 72.222 0.00 0.00 37.00 4.46
2470 4323 0.759812 GTAGGGTCTAGGGTGGCTCC 60.760 65.000 0.00 0.00 0.00 4.70
2484 4337 3.480470 CACCTAAAGGCATCATGTAGGG 58.520 50.000 7.87 0.00 39.32 3.53
3515 6422 3.496870 GGCATCATTTAGGGTCTAGGGTG 60.497 52.174 0.00 0.00 0.00 4.61
3516 6423 2.711547 GGCATCATTTAGGGTCTAGGGT 59.288 50.000 0.00 0.00 0.00 4.34
3517 6424 2.982488 AGGCATCATTTAGGGTCTAGGG 59.018 50.000 0.00 0.00 0.00 3.53
3518 6425 4.713792 AAGGCATCATTTAGGGTCTAGG 57.286 45.455 0.00 0.00 0.00 3.02
3526 6433 5.067805 GGAACCACCTAAAGGCATCATTTAG 59.932 44.000 0.00 4.55 39.10 1.85
3527 6434 4.953579 GGAACCACCTAAAGGCATCATTTA 59.046 41.667 0.00 0.00 39.32 1.40
3528 6435 3.769300 GGAACCACCTAAAGGCATCATTT 59.231 43.478 0.00 0.00 39.32 2.32
3529 6436 3.365472 GGAACCACCTAAAGGCATCATT 58.635 45.455 0.00 0.00 39.32 2.57
3530 6437 2.683742 CGGAACCACCTAAAGGCATCAT 60.684 50.000 0.00 0.00 39.32 2.45
3938 12164 1.888512 TGGAGCTGGCTTTTGTTCATC 59.111 47.619 0.00 0.00 0.00 2.92
4109 12452 7.671302 ACTAGATACTTCATGTGTGTTCTTGT 58.329 34.615 0.00 5.50 0.00 3.16
4332 12761 1.219393 GAGGTGCTGGTAGAGGTGC 59.781 63.158 0.00 0.00 0.00 5.01
4501 13039 0.176449 GGAATTCCAATGCTGGTGCC 59.824 55.000 20.04 0.00 43.97 5.01
4661 13203 1.676006 GGTACACAAGCTGCAACAAGT 59.324 47.619 1.02 0.00 0.00 3.16
4693 13235 0.968405 ACATGTGGCAATTGTGGACC 59.032 50.000 7.40 0.00 0.00 4.46
4831 13373 1.543208 GCATGACTGGACAAGGACACA 60.543 52.381 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.