Multiple sequence alignment - TraesCS3D01G134500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G134500 chr3D 100.000 4402 0 0 1 4402 93486024 93481623 0.000000e+00 8130.0
1 TraesCS3D01G134500 chr3B 94.897 1548 45 17 1270 2795 142718974 142720509 0.000000e+00 2390.0
2 TraesCS3D01G134500 chr3B 93.374 1630 78 19 2793 4399 142720623 142722245 0.000000e+00 2385.0
3 TraesCS3D01G134500 chr3B 94.118 901 44 5 297 1192 142718079 142718975 0.000000e+00 1362.0
4 TraesCS3D01G134500 chr3B 88.889 126 14 0 3037 3162 142720893 142721018 5.890000e-34 156.0
5 TraesCS3D01G134500 chr3B 98.387 62 1 0 3986 4047 142721745 142721806 4.650000e-20 110.0
6 TraesCS3D01G134500 chr3A 93.206 1619 62 22 1270 2862 546568987 546570583 0.000000e+00 2337.0
7 TraesCS3D01G134500 chr3A 95.842 1371 49 5 3037 4402 546570880 546572247 0.000000e+00 2209.0
8 TraesCS3D01G134500 chr3A 94.626 856 42 2 341 1192 546568133 546568988 0.000000e+00 1323.0
9 TraesCS3D01G134500 chr3A 91.892 333 22 3 2860 3191 546570676 546571004 1.120000e-125 460.0
10 TraesCS3D01G134500 chr5A 85.769 260 17 8 1 260 558330253 558330492 1.570000e-64 257.0
11 TraesCS3D01G134500 chrUn 90.909 55 3 2 206 259 409489011 409488958 6.110000e-09 73.1
12 TraesCS3D01G134500 chrUn 90.909 55 3 2 206 259 415264240 415264293 6.110000e-09 73.1
13 TraesCS3D01G134500 chr7B 90.909 55 3 2 206 259 648207463 648207516 6.110000e-09 73.1
14 TraesCS3D01G134500 chr7B 90.909 55 3 2 206 259 648217338 648217391 6.110000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G134500 chr3D 93481623 93486024 4401 True 8130.00 8130 100.0000 1 4402 1 chr3D.!!$R1 4401
1 TraesCS3D01G134500 chr3B 142718079 142722245 4166 False 1280.60 2390 93.9330 297 4399 5 chr3B.!!$F1 4102
2 TraesCS3D01G134500 chr3A 546568133 546572247 4114 False 1582.25 2337 93.8915 341 4402 4 chr3A.!!$F1 4061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.033920 GCTGGTTTTGGGCAAAGGAG 59.966 55.0 0.00 0.0 0.00 3.69 F
719 724 0.108615 GATAGATCCGCGTCCATGGG 60.109 60.0 13.02 0.0 0.00 4.00 F
792 797 0.319813 AGATTTGCTGCGGTTTTGGC 60.320 50.0 0.00 0.0 0.00 4.52 F
1493 1515 0.469917 TATCTAAGCCAGCACCCTGC 59.530 55.0 0.00 0.0 45.46 4.85 F
2780 2812 0.666913 GCTGCTATTCTGTGGGCATG 59.333 55.0 0.00 0.0 34.12 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1032 1040 1.163420 CGTACAGCCTTGTGTTGCCA 61.163 55.000 0.00 0.00 38.23 4.92 R
2454 2483 0.180406 AACTCTTTCCACGCCTGTGT 59.820 50.000 0.00 0.00 44.92 3.72 R
2455 2484 1.798813 GTAACTCTTTCCACGCCTGTG 59.201 52.381 0.00 0.00 46.00 3.66 R
3107 3350 0.108186 TCATAGGGCTGCGACTGTTG 60.108 55.000 5.84 0.00 0.00 3.33 R
3960 4256 0.458543 TCAGAGAAGCGCGGTTGATC 60.459 55.000 30.19 23.88 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.454948 TGTTCGTCCCTGTTGCAG 57.545 55.556 0.00 0.00 0.00 4.41
28 29 1.000938 CCTGTTGCAGGTTGAAGAAGC 60.001 52.381 6.99 0.00 45.82 3.86
29 30 1.677576 CTGTTGCAGGTTGAAGAAGCA 59.322 47.619 0.00 0.00 31.56 3.91
30 31 2.295349 CTGTTGCAGGTTGAAGAAGCAT 59.705 45.455 0.00 0.00 34.87 3.79
31 32 3.485394 TGTTGCAGGTTGAAGAAGCATA 58.515 40.909 0.00 0.00 34.87 3.14
32 33 4.081406 TGTTGCAGGTTGAAGAAGCATAT 58.919 39.130 0.00 0.00 34.87 1.78
33 34 4.523943 TGTTGCAGGTTGAAGAAGCATATT 59.476 37.500 0.00 0.00 34.87 1.28
34 35 5.709631 TGTTGCAGGTTGAAGAAGCATATTA 59.290 36.000 0.00 0.00 34.87 0.98
35 36 6.127925 TGTTGCAGGTTGAAGAAGCATATTAG 60.128 38.462 0.00 0.00 34.87 1.73
36 37 4.883585 TGCAGGTTGAAGAAGCATATTAGG 59.116 41.667 0.00 0.00 31.56 2.69
37 38 4.884164 GCAGGTTGAAGAAGCATATTAGGT 59.116 41.667 0.00 0.00 31.56 3.08
38 39 5.220931 GCAGGTTGAAGAAGCATATTAGGTG 60.221 44.000 0.00 0.00 31.56 4.00
39 40 5.297776 CAGGTTGAAGAAGCATATTAGGTGG 59.702 44.000 0.00 0.00 31.56 4.61
40 41 4.580580 GGTTGAAGAAGCATATTAGGTGGG 59.419 45.833 0.00 0.00 0.00 4.61
41 42 3.820557 TGAAGAAGCATATTAGGTGGGC 58.179 45.455 0.00 0.00 0.00 5.36
42 43 2.959465 AGAAGCATATTAGGTGGGCC 57.041 50.000 0.00 0.00 0.00 5.80
43 44 2.135189 AGAAGCATATTAGGTGGGCCA 58.865 47.619 0.00 0.00 37.19 5.36
44 45 2.513738 AGAAGCATATTAGGTGGGCCAA 59.486 45.455 8.40 0.00 37.19 4.52
45 46 2.664402 AGCATATTAGGTGGGCCAAG 57.336 50.000 8.40 0.00 37.19 3.61
46 47 2.135189 AGCATATTAGGTGGGCCAAGA 58.865 47.619 8.40 0.00 37.19 3.02
47 48 2.718609 AGCATATTAGGTGGGCCAAGAT 59.281 45.455 8.40 2.41 37.19 2.40
48 49 2.821969 GCATATTAGGTGGGCCAAGATG 59.178 50.000 8.40 7.03 37.19 2.90
49 50 3.751893 GCATATTAGGTGGGCCAAGATGT 60.752 47.826 8.40 0.00 37.19 3.06
50 51 2.442236 ATTAGGTGGGCCAAGATGTG 57.558 50.000 8.40 0.00 37.19 3.21
51 52 1.367346 TTAGGTGGGCCAAGATGTGA 58.633 50.000 8.40 0.00 37.19 3.58
52 53 0.911769 TAGGTGGGCCAAGATGTGAG 59.088 55.000 8.40 0.00 37.19 3.51
53 54 2.048603 GGTGGGCCAAGATGTGAGC 61.049 63.158 8.40 0.00 34.09 4.26
54 55 1.303561 GTGGGCCAAGATGTGAGCA 60.304 57.895 8.40 0.00 0.00 4.26
55 56 1.303561 TGGGCCAAGATGTGAGCAC 60.304 57.895 2.13 0.00 0.00 4.40
56 57 2.401766 GGGCCAAGATGTGAGCACG 61.402 63.158 4.39 0.00 0.00 5.34
57 58 1.672356 GGCCAAGATGTGAGCACGT 60.672 57.895 0.00 0.00 0.00 4.49
58 59 1.499056 GCCAAGATGTGAGCACGTG 59.501 57.895 12.28 12.28 0.00 4.49
59 60 1.915614 GCCAAGATGTGAGCACGTGG 61.916 60.000 18.88 4.44 0.00 4.94
60 61 1.300971 CCAAGATGTGAGCACGTGGG 61.301 60.000 18.88 1.44 0.00 4.61
61 62 0.320683 CAAGATGTGAGCACGTGGGA 60.321 55.000 18.88 0.00 0.00 4.37
62 63 0.036952 AAGATGTGAGCACGTGGGAG 60.037 55.000 18.88 0.00 0.00 4.30
63 64 1.448540 GATGTGAGCACGTGGGAGG 60.449 63.158 18.88 0.00 0.00 4.30
64 65 1.888436 GATGTGAGCACGTGGGAGGA 61.888 60.000 18.88 0.00 0.00 3.71
65 66 1.480212 ATGTGAGCACGTGGGAGGAA 61.480 55.000 18.88 0.00 0.00 3.36
66 67 1.070786 GTGAGCACGTGGGAGGAAA 59.929 57.895 18.88 0.00 0.00 3.13
67 68 0.534203 GTGAGCACGTGGGAGGAAAA 60.534 55.000 18.88 0.00 0.00 2.29
68 69 0.181587 TGAGCACGTGGGAGGAAAAA 59.818 50.000 18.88 0.00 0.00 1.94
69 70 0.875059 GAGCACGTGGGAGGAAAAAG 59.125 55.000 18.88 0.00 0.00 2.27
70 71 0.472471 AGCACGTGGGAGGAAAAAGA 59.528 50.000 18.88 0.00 0.00 2.52
71 72 1.133915 AGCACGTGGGAGGAAAAAGAA 60.134 47.619 18.88 0.00 0.00 2.52
72 73 1.679153 GCACGTGGGAGGAAAAAGAAA 59.321 47.619 18.88 0.00 0.00 2.52
73 74 2.100087 GCACGTGGGAGGAAAAAGAAAA 59.900 45.455 18.88 0.00 0.00 2.29
74 75 3.795488 GCACGTGGGAGGAAAAAGAAAAG 60.795 47.826 18.88 0.00 0.00 2.27
75 76 2.956333 ACGTGGGAGGAAAAAGAAAAGG 59.044 45.455 0.00 0.00 0.00 3.11
76 77 2.296190 CGTGGGAGGAAAAAGAAAAGGG 59.704 50.000 0.00 0.00 0.00 3.95
77 78 2.037251 GTGGGAGGAAAAAGAAAAGGGC 59.963 50.000 0.00 0.00 0.00 5.19
78 79 2.325484 GGGAGGAAAAAGAAAAGGGCA 58.675 47.619 0.00 0.00 0.00 5.36
79 80 2.906389 GGGAGGAAAAAGAAAAGGGCAT 59.094 45.455 0.00 0.00 0.00 4.40
80 81 3.327757 GGGAGGAAAAAGAAAAGGGCATT 59.672 43.478 0.00 0.00 0.00 3.56
81 82 4.563580 GGGAGGAAAAAGAAAAGGGCATTC 60.564 45.833 0.00 0.00 0.00 2.67
82 83 4.040339 GGAGGAAAAAGAAAAGGGCATTCA 59.960 41.667 0.00 0.00 0.00 2.57
83 84 5.219343 AGGAAAAAGAAAAGGGCATTCAG 57.781 39.130 0.00 0.00 0.00 3.02
84 85 4.040829 AGGAAAAAGAAAAGGGCATTCAGG 59.959 41.667 0.00 0.00 0.00 3.86
85 86 3.407424 AAAAGAAAAGGGCATTCAGGC 57.593 42.857 0.00 0.00 43.27 4.85
86 87 2.315720 AAGAAAAGGGCATTCAGGCT 57.684 45.000 0.00 0.00 43.56 4.58
87 88 1.553706 AGAAAAGGGCATTCAGGCTG 58.446 50.000 8.58 8.58 43.56 4.85
88 89 0.533951 GAAAAGGGCATTCAGGCTGG 59.466 55.000 15.73 0.00 43.56 4.85
89 90 0.906282 AAAAGGGCATTCAGGCTGGG 60.906 55.000 15.73 6.03 43.56 4.45
90 91 3.970746 AAGGGCATTCAGGCTGGGC 62.971 63.158 15.73 15.45 43.56 5.36
91 92 4.453892 GGGCATTCAGGCTGGGCT 62.454 66.667 15.73 0.00 43.56 5.19
92 93 3.145551 GGCATTCAGGCTGGGCTG 61.146 66.667 15.73 16.49 40.24 4.85
93 94 3.834799 GCATTCAGGCTGGGCTGC 61.835 66.667 15.73 16.41 0.00 5.25
94 95 2.361992 CATTCAGGCTGGGCTGCA 60.362 61.111 15.73 8.94 34.04 4.41
95 96 1.756950 CATTCAGGCTGGGCTGCAT 60.757 57.895 15.73 10.80 34.04 3.96
96 97 1.455217 ATTCAGGCTGGGCTGCATC 60.455 57.895 15.73 0.00 34.04 3.91
97 98 2.923634 ATTCAGGCTGGGCTGCATCC 62.924 60.000 15.73 0.00 34.04 3.51
98 99 4.435970 CAGGCTGGGCTGCATCCA 62.436 66.667 9.17 8.73 34.04 3.41
99 100 3.664888 AGGCTGGGCTGCATCCAA 61.665 61.111 9.17 0.00 33.36 3.53
100 101 3.145551 GGCTGGGCTGCATCCAAG 61.146 66.667 6.62 6.62 33.36 3.61
101 102 3.834799 GCTGGGCTGCATCCAAGC 61.835 66.667 19.86 19.86 33.36 4.01
105 106 4.664062 GGCTGCATCCAAGCCTAA 57.336 55.556 0.55 0.00 44.72 2.69
106 107 3.122369 GGCTGCATCCAAGCCTAAT 57.878 52.632 0.55 0.00 44.72 1.73
107 108 0.672342 GGCTGCATCCAAGCCTAATG 59.328 55.000 0.55 0.00 44.72 1.90
108 109 0.672342 GCTGCATCCAAGCCTAATGG 59.328 55.000 0.00 0.00 39.41 3.16
109 110 1.325355 CTGCATCCAAGCCTAATGGG 58.675 55.000 0.00 0.00 38.54 4.00
126 127 2.592861 GCTGCCGGCCCATTCTAG 60.593 66.667 26.77 14.04 34.27 2.43
127 128 2.592861 CTGCCGGCCCATTCTAGC 60.593 66.667 26.77 0.00 0.00 3.42
128 129 4.545706 TGCCGGCCCATTCTAGCG 62.546 66.667 26.77 0.00 0.00 4.26
130 131 4.241555 CCGGCCCATTCTAGCGCT 62.242 66.667 17.26 17.26 0.00 5.92
131 132 2.734591 CGGCCCATTCTAGCGCTA 59.265 61.111 17.75 17.75 0.00 4.26
132 133 1.069090 CGGCCCATTCTAGCGCTAA 59.931 57.895 19.37 6.86 0.00 3.09
133 134 1.222115 CGGCCCATTCTAGCGCTAAC 61.222 60.000 19.37 2.15 0.00 2.34
134 135 0.885150 GGCCCATTCTAGCGCTAACC 60.885 60.000 19.37 7.52 0.00 2.85
135 136 0.179056 GCCCATTCTAGCGCTAACCA 60.179 55.000 19.37 5.45 0.00 3.67
136 137 1.871080 CCCATTCTAGCGCTAACCAG 58.129 55.000 19.37 8.71 0.00 4.00
137 138 1.221414 CCATTCTAGCGCTAACCAGC 58.779 55.000 19.37 0.00 44.90 4.85
155 156 4.121669 GAGCAGCTGTCGAGGCGA 62.122 66.667 16.64 0.00 34.52 5.54
156 157 3.633094 GAGCAGCTGTCGAGGCGAA 62.633 63.158 16.64 0.00 37.72 4.70
157 158 3.482783 GCAGCTGTCGAGGCGAAC 61.483 66.667 16.64 0.00 37.72 3.95
158 159 3.175240 CAGCTGTCGAGGCGAACG 61.175 66.667 5.25 0.00 37.72 3.95
159 160 3.362797 AGCTGTCGAGGCGAACGA 61.363 61.111 0.00 0.00 37.72 3.85
160 161 2.202623 GCTGTCGAGGCGAACGAT 60.203 61.111 7.56 0.00 41.62 3.73
161 162 2.224885 GCTGTCGAGGCGAACGATC 61.225 63.158 7.56 0.00 41.62 3.69
162 163 1.429825 CTGTCGAGGCGAACGATCT 59.570 57.895 7.56 0.00 41.62 2.75
163 164 0.863538 CTGTCGAGGCGAACGATCTG 60.864 60.000 7.56 0.00 41.62 2.90
164 165 1.136984 GTCGAGGCGAACGATCTGT 59.863 57.895 7.56 0.00 41.62 3.41
165 166 0.862283 GTCGAGGCGAACGATCTGTC 60.862 60.000 7.56 0.00 41.62 3.51
166 167 1.586564 CGAGGCGAACGATCTGTCC 60.587 63.158 0.00 0.00 0.00 4.02
167 168 1.511305 GAGGCGAACGATCTGTCCA 59.489 57.895 0.00 0.00 0.00 4.02
168 169 0.108804 GAGGCGAACGATCTGTCCAA 60.109 55.000 0.00 0.00 0.00 3.53
169 170 0.389948 AGGCGAACGATCTGTCCAAC 60.390 55.000 0.00 0.00 0.00 3.77
170 171 0.389948 GGCGAACGATCTGTCCAACT 60.390 55.000 0.00 0.00 0.00 3.16
171 172 0.992802 GCGAACGATCTGTCCAACTC 59.007 55.000 0.00 0.00 0.00 3.01
172 173 1.630148 CGAACGATCTGTCCAACTCC 58.370 55.000 0.00 0.00 0.00 3.85
173 174 1.067846 CGAACGATCTGTCCAACTCCA 60.068 52.381 0.00 0.00 0.00 3.86
174 175 2.611518 GAACGATCTGTCCAACTCCAG 58.388 52.381 0.00 0.00 0.00 3.86
175 176 1.924731 ACGATCTGTCCAACTCCAGA 58.075 50.000 0.00 0.00 41.61 3.86
177 178 2.834549 ACGATCTGTCCAACTCCAGATT 59.165 45.455 3.88 0.00 45.87 2.40
178 179 3.261897 ACGATCTGTCCAACTCCAGATTT 59.738 43.478 3.88 0.00 45.87 2.17
179 180 4.256920 CGATCTGTCCAACTCCAGATTTT 58.743 43.478 3.88 0.00 45.87 1.82
180 181 4.331168 CGATCTGTCCAACTCCAGATTTTC 59.669 45.833 3.88 0.00 45.87 2.29
181 182 4.705110 TCTGTCCAACTCCAGATTTTCA 57.295 40.909 0.00 0.00 32.93 2.69
182 183 5.047566 TCTGTCCAACTCCAGATTTTCAA 57.952 39.130 0.00 0.00 32.93 2.69
183 184 4.821805 TCTGTCCAACTCCAGATTTTCAAC 59.178 41.667 0.00 0.00 32.93 3.18
184 185 3.888930 TGTCCAACTCCAGATTTTCAACC 59.111 43.478 0.00 0.00 0.00 3.77
185 186 3.888930 GTCCAACTCCAGATTTTCAACCA 59.111 43.478 0.00 0.00 0.00 3.67
186 187 4.022849 GTCCAACTCCAGATTTTCAACCAG 60.023 45.833 0.00 0.00 0.00 4.00
187 188 4.141274 TCCAACTCCAGATTTTCAACCAGA 60.141 41.667 0.00 0.00 0.00 3.86
188 189 4.584325 CCAACTCCAGATTTTCAACCAGAA 59.416 41.667 0.00 0.00 0.00 3.02
189 190 5.278660 CCAACTCCAGATTTTCAACCAGAAG 60.279 44.000 0.00 0.00 37.57 2.85
190 191 3.823304 ACTCCAGATTTTCAACCAGAAGC 59.177 43.478 0.00 0.00 37.57 3.86
191 192 4.077822 CTCCAGATTTTCAACCAGAAGCT 58.922 43.478 0.00 0.00 37.57 3.74
192 193 3.822735 TCCAGATTTTCAACCAGAAGCTG 59.177 43.478 0.00 0.00 37.57 4.24
206 207 2.341176 GCTGGCTGCTGGTTTTGG 59.659 61.111 9.31 0.00 38.95 3.28
207 208 3.053828 CTGGCTGCTGGTTTTGGG 58.946 61.111 0.00 0.00 0.00 4.12
208 209 3.230522 CTGGCTGCTGGTTTTGGGC 62.231 63.158 0.00 0.00 0.00 5.36
209 210 3.233231 GGCTGCTGGTTTTGGGCA 61.233 61.111 0.00 0.00 34.66 5.36
210 211 2.806009 GGCTGCTGGTTTTGGGCAA 61.806 57.895 0.00 0.00 35.49 4.52
211 212 1.145819 GCTGCTGGTTTTGGGCAAA 59.854 52.632 0.00 0.00 35.49 3.68
212 213 0.881600 GCTGCTGGTTTTGGGCAAAG 60.882 55.000 0.00 0.00 35.49 2.77
213 214 0.249996 CTGCTGGTTTTGGGCAAAGG 60.250 55.000 0.00 0.00 35.49 3.11
214 215 0.689080 TGCTGGTTTTGGGCAAAGGA 60.689 50.000 0.00 0.00 32.79 3.36
215 216 0.033920 GCTGGTTTTGGGCAAAGGAG 59.966 55.000 0.00 0.00 0.00 3.69
216 217 1.413118 CTGGTTTTGGGCAAAGGAGT 58.587 50.000 0.00 0.00 0.00 3.85
217 218 1.762370 CTGGTTTTGGGCAAAGGAGTT 59.238 47.619 0.00 0.00 0.00 3.01
218 219 1.484240 TGGTTTTGGGCAAAGGAGTTG 59.516 47.619 0.00 0.00 40.50 3.16
219 220 1.760029 GGTTTTGGGCAAAGGAGTTGA 59.240 47.619 0.00 0.00 39.87 3.18
220 221 2.224042 GGTTTTGGGCAAAGGAGTTGAG 60.224 50.000 0.00 0.00 39.87 3.02
221 222 1.703411 TTTGGGCAAAGGAGTTGAGG 58.297 50.000 0.00 0.00 39.87 3.86
222 223 0.850100 TTGGGCAAAGGAGTTGAGGA 59.150 50.000 0.00 0.00 39.87 3.71
223 224 0.401738 TGGGCAAAGGAGTTGAGGAG 59.598 55.000 0.00 0.00 39.87 3.69
224 225 0.402121 GGGCAAAGGAGTTGAGGAGT 59.598 55.000 0.00 0.00 39.87 3.85
225 226 1.202940 GGGCAAAGGAGTTGAGGAGTT 60.203 52.381 0.00 0.00 39.87 3.01
226 227 2.587522 GGCAAAGGAGTTGAGGAGTTT 58.412 47.619 0.00 0.00 39.87 2.66
227 228 2.294512 GGCAAAGGAGTTGAGGAGTTTG 59.705 50.000 0.00 0.00 39.87 2.93
228 229 3.214328 GCAAAGGAGTTGAGGAGTTTGA 58.786 45.455 0.00 0.00 39.87 2.69
229 230 3.251972 GCAAAGGAGTTGAGGAGTTTGAG 59.748 47.826 0.00 0.00 39.87 3.02
230 231 3.778954 AAGGAGTTGAGGAGTTTGAGG 57.221 47.619 0.00 0.00 0.00 3.86
231 232 1.349357 AGGAGTTGAGGAGTTTGAGGC 59.651 52.381 0.00 0.00 0.00 4.70
232 233 1.349357 GGAGTTGAGGAGTTTGAGGCT 59.651 52.381 0.00 0.00 0.00 4.58
233 234 2.421619 GAGTTGAGGAGTTTGAGGCTG 58.578 52.381 0.00 0.00 0.00 4.85
234 235 1.771255 AGTTGAGGAGTTTGAGGCTGT 59.229 47.619 0.00 0.00 0.00 4.40
235 236 1.876156 GTTGAGGAGTTTGAGGCTGTG 59.124 52.381 0.00 0.00 0.00 3.66
236 237 0.397941 TGAGGAGTTTGAGGCTGTGG 59.602 55.000 0.00 0.00 0.00 4.17
237 238 0.687354 GAGGAGTTTGAGGCTGTGGA 59.313 55.000 0.00 0.00 0.00 4.02
238 239 0.689623 AGGAGTTTGAGGCTGTGGAG 59.310 55.000 0.00 0.00 0.00 3.86
239 240 0.322008 GGAGTTTGAGGCTGTGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
240 241 0.322008 GAGTTTGAGGCTGTGGAGGG 60.322 60.000 0.00 0.00 0.00 4.30
241 242 1.973812 GTTTGAGGCTGTGGAGGGC 60.974 63.158 0.00 0.00 0.00 5.19
242 243 2.156098 TTTGAGGCTGTGGAGGGCT 61.156 57.895 0.00 0.00 42.29 5.19
243 244 0.840288 TTTGAGGCTGTGGAGGGCTA 60.840 55.000 0.00 0.00 39.69 3.93
244 245 1.553690 TTGAGGCTGTGGAGGGCTAC 61.554 60.000 0.00 0.00 39.69 3.58
245 246 2.689034 AGGCTGTGGAGGGCTACC 60.689 66.667 0.00 0.00 37.82 3.18
246 247 4.162690 GGCTGTGGAGGGCTACCG 62.163 72.222 0.00 0.00 43.47 4.02
247 248 3.075005 GCTGTGGAGGGCTACCGA 61.075 66.667 0.00 0.00 43.47 4.69
248 249 2.656069 GCTGTGGAGGGCTACCGAA 61.656 63.158 0.00 0.00 43.47 4.30
249 250 1.218316 CTGTGGAGGGCTACCGAAC 59.782 63.158 0.00 0.00 43.47 3.95
250 251 1.534476 TGTGGAGGGCTACCGAACA 60.534 57.895 0.00 0.00 43.47 3.18
251 252 1.218316 GTGGAGGGCTACCGAACAG 59.782 63.158 0.00 0.00 43.47 3.16
253 254 2.187163 GAGGGCTACCGAACAGGC 59.813 66.667 0.00 0.00 46.52 4.85
256 257 3.400054 GGCTACCGAACAGGCCCT 61.400 66.667 0.00 0.00 46.52 5.19
257 258 2.062177 GGCTACCGAACAGGCCCTA 61.062 63.158 0.00 0.00 46.52 3.53
258 259 1.619807 GGCTACCGAACAGGCCCTAA 61.620 60.000 0.00 0.00 46.52 2.69
259 260 0.251073 GCTACCGAACAGGCCCTAAA 59.749 55.000 0.00 0.00 46.52 1.85
260 261 2.010544 GCTACCGAACAGGCCCTAAAC 61.011 57.143 0.00 0.00 46.52 2.01
261 262 1.276989 CTACCGAACAGGCCCTAAACA 59.723 52.381 0.00 0.00 46.52 2.83
262 263 0.696501 ACCGAACAGGCCCTAAACAT 59.303 50.000 0.00 0.00 46.52 2.71
263 264 1.094785 CCGAACAGGCCCTAAACATG 58.905 55.000 0.00 0.00 0.00 3.21
264 265 0.451783 CGAACAGGCCCTAAACATGC 59.548 55.000 0.00 0.00 0.00 4.06
265 266 1.544724 GAACAGGCCCTAAACATGCA 58.455 50.000 0.00 0.00 0.00 3.96
266 267 1.474077 GAACAGGCCCTAAACATGCAG 59.526 52.381 0.00 0.00 0.00 4.41
267 268 0.698238 ACAGGCCCTAAACATGCAGA 59.302 50.000 0.00 0.00 0.00 4.26
268 269 1.285962 ACAGGCCCTAAACATGCAGAT 59.714 47.619 0.00 0.00 0.00 2.90
269 270 1.679680 CAGGCCCTAAACATGCAGATG 59.320 52.381 0.00 0.00 35.49 2.90
270 271 1.035139 GGCCCTAAACATGCAGATGG 58.965 55.000 0.00 0.00 33.39 3.51
271 272 1.035139 GCCCTAAACATGCAGATGGG 58.965 55.000 0.00 0.00 33.39 4.00
272 273 1.035139 CCCTAAACATGCAGATGGGC 58.965 55.000 0.00 0.00 33.39 5.36
273 274 1.035139 CCTAAACATGCAGATGGGCC 58.965 55.000 0.00 0.00 33.39 5.80
274 275 1.685803 CCTAAACATGCAGATGGGCCA 60.686 52.381 9.61 9.61 33.39 5.36
275 276 2.313317 CTAAACATGCAGATGGGCCAT 58.687 47.619 21.39 21.39 33.39 4.40
276 277 1.575419 AAACATGCAGATGGGCCATT 58.425 45.000 22.20 7.93 33.39 3.16
277 278 0.828022 AACATGCAGATGGGCCATTG 59.172 50.000 22.20 19.91 33.39 2.82
278 279 0.324923 ACATGCAGATGGGCCATTGT 60.325 50.000 22.20 17.35 33.39 2.71
279 280 0.828022 CATGCAGATGGGCCATTGTT 59.172 50.000 22.20 6.89 0.00 2.83
280 281 2.033372 CATGCAGATGGGCCATTGTTA 58.967 47.619 22.20 13.37 0.00 2.41
281 282 1.766494 TGCAGATGGGCCATTGTTAG 58.234 50.000 22.20 10.01 0.00 2.34
282 283 1.035139 GCAGATGGGCCATTGTTAGG 58.965 55.000 22.20 7.93 0.00 2.69
288 289 3.603365 GCCATTGTTAGGCGCCTT 58.397 55.556 37.74 19.11 43.15 4.35
289 290 1.433471 GCCATTGTTAGGCGCCTTC 59.567 57.895 37.74 27.00 43.15 3.46
290 291 1.032114 GCCATTGTTAGGCGCCTTCT 61.032 55.000 37.74 14.17 43.15 2.85
291 292 1.017387 CCATTGTTAGGCGCCTTCTC 58.983 55.000 37.74 24.09 0.00 2.87
292 293 1.407437 CCATTGTTAGGCGCCTTCTCT 60.407 52.381 37.74 13.25 0.00 3.10
293 294 1.936547 CATTGTTAGGCGCCTTCTCTC 59.063 52.381 37.74 19.81 0.00 3.20
294 295 0.973632 TTGTTAGGCGCCTTCTCTCA 59.026 50.000 37.74 22.09 0.00 3.27
295 296 0.246635 TGTTAGGCGCCTTCTCTCAC 59.753 55.000 37.74 20.67 0.00 3.51
313 314 2.047179 AGGCCTCGCGTCCTTTTC 60.047 61.111 5.77 0.00 0.00 2.29
553 556 3.319198 GCAGGTGAGACCCCCGAA 61.319 66.667 0.00 0.00 39.75 4.30
579 584 2.593725 CGATCTCGCCCCCGTCTA 60.594 66.667 0.00 0.00 35.54 2.59
667 672 1.515519 TTCGATTCGTCCGCGGAAG 60.516 57.895 32.93 32.29 38.89 3.46
719 724 0.108615 GATAGATCCGCGTCCATGGG 60.109 60.000 13.02 0.00 0.00 4.00
778 783 2.817844 GTGGCGGTGGTTTTCTAGATTT 59.182 45.455 0.00 0.00 0.00 2.17
780 785 2.415491 GGCGGTGGTTTTCTAGATTTGC 60.415 50.000 0.00 0.00 0.00 3.68
792 797 0.319813 AGATTTGCTGCGGTTTTGGC 60.320 50.000 0.00 0.00 0.00 4.52
849 857 2.820787 AGCTAGGCTACTGCGTAATAGG 59.179 50.000 0.00 0.00 38.78 2.57
889 897 5.466728 TCCGTATGCTGCTCTAATTGAATTC 59.533 40.000 0.00 0.00 0.00 2.17
934 942 1.279271 GGGAGGAGTTTGCTCTGCTTA 59.721 52.381 0.00 0.00 41.38 3.09
1122 1130 0.761187 GCAGATATGGGAGGTGAGCA 59.239 55.000 0.00 0.00 0.00 4.26
1198 1206 5.899631 TGGAACAAATATACTACCCCCTC 57.100 43.478 0.00 0.00 31.92 4.30
1199 1207 4.661709 TGGAACAAATATACTACCCCCTCC 59.338 45.833 0.00 0.00 31.92 4.30
1200 1208 4.661709 GGAACAAATATACTACCCCCTCCA 59.338 45.833 0.00 0.00 0.00 3.86
1201 1209 5.133153 GGAACAAATATACTACCCCCTCCAA 59.867 44.000 0.00 0.00 0.00 3.53
1202 1210 6.183361 GGAACAAATATACTACCCCCTCCAAT 60.183 42.308 0.00 0.00 0.00 3.16
1203 1211 6.449830 ACAAATATACTACCCCCTCCAATC 57.550 41.667 0.00 0.00 0.00 2.67
1204 1212 5.312443 ACAAATATACTACCCCCTCCAATCC 59.688 44.000 0.00 0.00 0.00 3.01
1205 1213 4.796185 ATATACTACCCCCTCCAATCCA 57.204 45.455 0.00 0.00 0.00 3.41
1206 1214 2.974285 TACTACCCCCTCCAATCCAA 57.026 50.000 0.00 0.00 0.00 3.53
1207 1215 2.068831 ACTACCCCCTCCAATCCAAA 57.931 50.000 0.00 0.00 0.00 3.28
1208 1216 2.364190 ACTACCCCCTCCAATCCAAAA 58.636 47.619 0.00 0.00 0.00 2.44
1209 1217 2.725227 ACTACCCCCTCCAATCCAAAAA 59.275 45.455 0.00 0.00 0.00 1.94
1238 1246 6.134061 GTGGAACTAAAGCTGAACTAAAACG 58.866 40.000 0.00 0.00 0.00 3.60
1239 1247 6.018507 GTGGAACTAAAGCTGAACTAAAACGA 60.019 38.462 0.00 0.00 0.00 3.85
1240 1248 6.018507 TGGAACTAAAGCTGAACTAAAACGAC 60.019 38.462 0.00 0.00 0.00 4.34
1241 1249 5.919272 ACTAAAGCTGAACTAAAACGACC 57.081 39.130 0.00 0.00 0.00 4.79
1242 1250 5.362263 ACTAAAGCTGAACTAAAACGACCA 58.638 37.500 0.00 0.00 0.00 4.02
1243 1251 5.995897 ACTAAAGCTGAACTAAAACGACCAT 59.004 36.000 0.00 0.00 0.00 3.55
1244 1252 4.749245 AAGCTGAACTAAAACGACCATG 57.251 40.909 0.00 0.00 0.00 3.66
1245 1253 4.002906 AGCTGAACTAAAACGACCATGA 57.997 40.909 0.00 0.00 0.00 3.07
1246 1254 3.746492 AGCTGAACTAAAACGACCATGAC 59.254 43.478 0.00 0.00 0.00 3.06
1247 1255 3.496884 GCTGAACTAAAACGACCATGACA 59.503 43.478 0.00 0.00 0.00 3.58
1248 1256 4.610680 GCTGAACTAAAACGACCATGACAC 60.611 45.833 0.00 0.00 0.00 3.67
1249 1257 4.699637 TGAACTAAAACGACCATGACACT 58.300 39.130 0.00 0.00 0.00 3.55
1250 1258 5.120399 TGAACTAAAACGACCATGACACTT 58.880 37.500 0.00 0.00 0.00 3.16
1251 1259 5.587043 TGAACTAAAACGACCATGACACTTT 59.413 36.000 0.00 0.00 0.00 2.66
1252 1260 6.094325 TGAACTAAAACGACCATGACACTTTT 59.906 34.615 0.00 0.00 0.00 2.27
1253 1261 6.445357 ACTAAAACGACCATGACACTTTTT 57.555 33.333 0.00 0.94 0.00 1.94
1274 1282 4.884668 TTTGGATCGGAGTGAGTAGTTT 57.115 40.909 0.00 0.00 0.00 2.66
1279 1287 3.826236 TCGGAGTGAGTAGTTTCTTCG 57.174 47.619 0.00 0.00 0.00 3.79
1281 1289 4.318332 TCGGAGTGAGTAGTTTCTTCGTA 58.682 43.478 0.00 0.00 31.75 3.43
1287 1295 7.148272 GGAGTGAGTAGTTTCTTCGTATACAGT 60.148 40.741 3.32 0.00 0.00 3.55
1343 1356 6.611381 TGCAAGTTATGTGTGATTTAGCTTC 58.389 36.000 0.00 0.00 0.00 3.86
1413 1428 3.364366 GCAGAAATTGAGACACCTGTTCG 60.364 47.826 0.00 0.00 0.00 3.95
1444 1466 2.580322 ACCCAATGTCATCCACATGGTA 59.420 45.455 0.00 0.00 45.77 3.25
1493 1515 0.469917 TATCTAAGCCAGCACCCTGC 59.530 55.000 0.00 0.00 45.46 4.85
1517 1540 4.928615 GGTCTCTCAACATTGTTCTCTCTG 59.071 45.833 0.00 0.00 0.00 3.35
1568 1591 2.627699 TCCACAAGCCCTTCATGTTTTC 59.372 45.455 0.00 0.00 0.00 2.29
1880 1903 6.910433 CGAGTTTGCATTTGTTGTAAGTAACT 59.090 34.615 0.00 0.00 31.22 2.24
1929 1953 8.862325 TCTTAATCCATGTTTGTACTGTTCAT 57.138 30.769 0.00 0.00 0.00 2.57
1947 1971 4.104383 TCATATTGATGCCCCTCCTTTC 57.896 45.455 0.00 0.00 32.62 2.62
2142 2170 8.523658 GTTATTTGCCCTTCCTTATTATGATCC 58.476 37.037 0.00 0.00 0.00 3.36
2189 2217 2.989824 AGGAGGTGACCGTGACCG 60.990 66.667 1.10 0.00 38.64 4.79
2190 2218 3.300765 GGAGGTGACCGTGACCGT 61.301 66.667 1.10 0.00 38.64 4.83
2191 2219 2.049433 GAGGTGACCGTGACCGTG 60.049 66.667 1.10 0.00 38.64 4.94
2247 2275 1.229658 ACCTCCTCCTGGTTCTGGG 60.230 63.158 0.00 0.00 33.34 4.45
2313 2341 0.668535 AAGCTGGCGACTGGAAAAAC 59.331 50.000 0.00 0.00 0.00 2.43
2358 2386 2.311542 TGGCCACATAGAAAGGGATTGT 59.688 45.455 0.00 0.00 0.00 2.71
2394 2422 1.524621 CCTCAAGTATGCCCTGCGG 60.525 63.158 0.00 0.00 0.00 5.69
2413 2442 3.059120 GCGGGTTGTCTTTTCTGTTCTAC 60.059 47.826 0.00 0.00 0.00 2.59
2415 2444 4.025145 CGGGTTGTCTTTTCTGTTCTACAC 60.025 45.833 0.00 0.00 0.00 2.90
2416 2445 4.879545 GGGTTGTCTTTTCTGTTCTACACA 59.120 41.667 0.00 0.00 0.00 3.72
2419 2448 7.227910 GGGTTGTCTTTTCTGTTCTACACATAA 59.772 37.037 0.00 0.00 33.76 1.90
2420 2449 8.283291 GGTTGTCTTTTCTGTTCTACACATAAG 58.717 37.037 0.00 0.00 33.76 1.73
2421 2450 8.827677 GTTGTCTTTTCTGTTCTACACATAAGT 58.172 33.333 0.00 0.00 33.76 2.24
2455 2484 9.567848 TCTGACTTTAGTTTTGTTGATGAAAAC 57.432 29.630 0.00 0.00 41.60 2.43
2582 2614 5.004922 TGAAAATTTGAGCACCGTTTCTT 57.995 34.783 0.00 0.00 0.00 2.52
2627 2659 6.289064 CCTTGTTCTGGTAGTCTGTTTAGTT 58.711 40.000 0.00 0.00 0.00 2.24
2631 2663 6.984474 TGTTCTGGTAGTCTGTTTAGTTTGAG 59.016 38.462 0.00 0.00 0.00 3.02
2658 2690 9.809096 TTCTGATCATAGTACTGTCATTCTTTC 57.191 33.333 5.39 0.00 0.00 2.62
2780 2812 0.666913 GCTGCTATTCTGTGGGCATG 59.333 55.000 0.00 0.00 34.12 4.06
2787 2819 2.685106 TTCTGTGGGCATGGGTTTAA 57.315 45.000 0.00 0.00 0.00 1.52
2928 3171 7.316640 TGCTTTTAAACATACTTGTGTTGTGT 58.683 30.769 0.00 0.00 41.22 3.72
3047 3290 2.279784 CGATCAAGGAGCCCTCGC 60.280 66.667 0.00 0.00 30.89 5.03
3085 3328 2.997897 GAGCCCCCGTGACAGTCT 60.998 66.667 1.31 0.00 0.00 3.24
3092 3335 2.262915 CGTGACAGTCTCAGCCCC 59.737 66.667 1.31 0.00 0.00 5.80
3173 3446 4.640690 AGGAGCCCCCGTGACAGT 62.641 66.667 0.00 0.00 40.87 3.55
3191 3464 2.443016 CGCAGCCCTAGGAGGAGT 60.443 66.667 11.48 0.00 37.67 3.85
3314 3587 1.538687 AAAACATGAGCCCAGCTGCC 61.539 55.000 8.66 0.77 39.88 4.85
3328 3601 1.221840 CTGCCAATGGTCGTAGCCT 59.778 57.895 0.00 0.00 0.00 4.58
3357 3630 2.746277 ACGGCGAAGACAATGGCC 60.746 61.111 16.62 0.00 42.14 5.36
3440 3714 1.338020 CAAGCTTTCACCCAGTGGAAC 59.662 52.381 11.95 0.00 33.87 3.62
3468 3742 1.028905 CTGGTGAGGGTCGAGAGATC 58.971 60.000 0.00 0.00 45.19 2.75
3486 3760 6.442952 AGAGATCGATCAAATTCTTCCTACG 58.557 40.000 26.47 0.00 0.00 3.51
3703 3995 7.481798 CGAAAATGCTTGTAGTATTTGTCCTTC 59.518 37.037 3.99 0.00 39.13 3.46
3859 4152 2.470983 TGGATGCGTCTGTGAAATCA 57.529 45.000 5.77 0.00 0.00 2.57
3869 4165 3.624861 GTCTGTGAAATCATCATCGGCTT 59.375 43.478 0.00 0.00 40.97 4.35
3932 4228 2.371841 TCTGTAACCATGTTGAGGCTGT 59.628 45.455 0.00 0.00 0.00 4.40
3944 4240 2.143594 GAGGCTGTTCACGTCGGAGT 62.144 60.000 0.00 0.00 0.00 3.85
3952 4248 1.136984 CACGTCGGAGTAGTCCAGC 59.863 63.158 16.94 7.29 44.18 4.85
3959 4255 2.035312 AGTAGTCCAGCCCGTCGT 59.965 61.111 0.00 0.00 0.00 4.34
3960 4256 2.181021 GTAGTCCAGCCCGTCGTG 59.819 66.667 0.00 0.00 0.00 4.35
4165 4464 4.492160 TACTTCCTCAGCGCCGCG 62.492 66.667 8.83 8.83 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.454948 CTGCAACAGGGACGAACA 57.545 55.556 0.00 0.00 0.00 3.18
9 10 1.677576 TGCTTCTTCAACCTGCAACAG 59.322 47.619 0.00 0.00 0.00 3.16
10 11 1.761449 TGCTTCTTCAACCTGCAACA 58.239 45.000 0.00 0.00 0.00 3.33
11 12 4.708726 ATATGCTTCTTCAACCTGCAAC 57.291 40.909 0.00 0.00 37.20 4.17
12 13 5.357878 CCTAATATGCTTCTTCAACCTGCAA 59.642 40.000 0.00 0.00 37.20 4.08
13 14 4.883585 CCTAATATGCTTCTTCAACCTGCA 59.116 41.667 0.00 0.00 38.05 4.41
14 15 4.884164 ACCTAATATGCTTCTTCAACCTGC 59.116 41.667 0.00 0.00 0.00 4.85
15 16 5.297776 CCACCTAATATGCTTCTTCAACCTG 59.702 44.000 0.00 0.00 0.00 4.00
16 17 5.440610 CCACCTAATATGCTTCTTCAACCT 58.559 41.667 0.00 0.00 0.00 3.50
17 18 4.580580 CCCACCTAATATGCTTCTTCAACC 59.419 45.833 0.00 0.00 0.00 3.77
18 19 4.036852 GCCCACCTAATATGCTTCTTCAAC 59.963 45.833 0.00 0.00 0.00 3.18
19 20 4.207165 GCCCACCTAATATGCTTCTTCAA 58.793 43.478 0.00 0.00 0.00 2.69
20 21 3.435026 GGCCCACCTAATATGCTTCTTCA 60.435 47.826 0.00 0.00 0.00 3.02
21 22 3.149981 GGCCCACCTAATATGCTTCTTC 58.850 50.000 0.00 0.00 0.00 2.87
22 23 2.513738 TGGCCCACCTAATATGCTTCTT 59.486 45.455 0.00 0.00 36.63 2.52
23 24 2.135189 TGGCCCACCTAATATGCTTCT 58.865 47.619 0.00 0.00 36.63 2.85
24 25 2.656947 TGGCCCACCTAATATGCTTC 57.343 50.000 0.00 0.00 36.63 3.86
25 26 2.513738 TCTTGGCCCACCTAATATGCTT 59.486 45.455 0.00 0.00 36.63 3.91
26 27 2.135189 TCTTGGCCCACCTAATATGCT 58.865 47.619 0.00 0.00 36.63 3.79
27 28 2.656947 TCTTGGCCCACCTAATATGC 57.343 50.000 0.00 0.00 36.63 3.14
28 29 3.822735 CACATCTTGGCCCACCTAATATG 59.177 47.826 0.00 0.00 36.63 1.78
29 30 3.721575 TCACATCTTGGCCCACCTAATAT 59.278 43.478 0.00 0.00 36.63 1.28
30 31 3.119319 TCACATCTTGGCCCACCTAATA 58.881 45.455 0.00 0.00 36.63 0.98
31 32 1.922447 TCACATCTTGGCCCACCTAAT 59.078 47.619 0.00 0.00 36.63 1.73
32 33 1.281867 CTCACATCTTGGCCCACCTAA 59.718 52.381 0.00 0.00 36.63 2.69
33 34 0.911769 CTCACATCTTGGCCCACCTA 59.088 55.000 0.00 0.00 36.63 3.08
34 35 1.687612 CTCACATCTTGGCCCACCT 59.312 57.895 0.00 0.00 36.63 4.00
35 36 2.048603 GCTCACATCTTGGCCCACC 61.049 63.158 0.00 0.00 0.00 4.61
36 37 1.303561 TGCTCACATCTTGGCCCAC 60.304 57.895 0.00 0.00 0.00 4.61
37 38 1.303561 GTGCTCACATCTTGGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
38 39 2.401766 CGTGCTCACATCTTGGCCC 61.402 63.158 0.00 0.00 0.00 5.80
39 40 1.672356 ACGTGCTCACATCTTGGCC 60.672 57.895 0.00 0.00 0.00 5.36
40 41 1.499056 CACGTGCTCACATCTTGGC 59.501 57.895 0.82 0.00 0.00 4.52
41 42 1.300971 CCCACGTGCTCACATCTTGG 61.301 60.000 10.91 0.00 0.00 3.61
42 43 0.320683 TCCCACGTGCTCACATCTTG 60.321 55.000 10.91 0.00 0.00 3.02
43 44 0.036952 CTCCCACGTGCTCACATCTT 60.037 55.000 10.91 0.00 0.00 2.40
44 45 1.593787 CTCCCACGTGCTCACATCT 59.406 57.895 10.91 0.00 0.00 2.90
45 46 1.448540 CCTCCCACGTGCTCACATC 60.449 63.158 10.91 0.00 0.00 3.06
46 47 1.480212 TTCCTCCCACGTGCTCACAT 61.480 55.000 10.91 0.00 0.00 3.21
47 48 1.691195 TTTCCTCCCACGTGCTCACA 61.691 55.000 10.91 0.00 0.00 3.58
48 49 0.534203 TTTTCCTCCCACGTGCTCAC 60.534 55.000 10.91 0.00 0.00 3.51
49 50 0.181587 TTTTTCCTCCCACGTGCTCA 59.818 50.000 10.91 0.00 0.00 4.26
50 51 0.875059 CTTTTTCCTCCCACGTGCTC 59.125 55.000 10.91 0.00 0.00 4.26
51 52 0.472471 TCTTTTTCCTCCCACGTGCT 59.528 50.000 10.91 0.00 0.00 4.40
52 53 1.314730 TTCTTTTTCCTCCCACGTGC 58.685 50.000 10.91 0.00 0.00 5.34
53 54 3.243401 CCTTTTCTTTTTCCTCCCACGTG 60.243 47.826 9.08 9.08 0.00 4.49
54 55 2.956333 CCTTTTCTTTTTCCTCCCACGT 59.044 45.455 0.00 0.00 0.00 4.49
55 56 2.296190 CCCTTTTCTTTTTCCTCCCACG 59.704 50.000 0.00 0.00 0.00 4.94
56 57 2.037251 GCCCTTTTCTTTTTCCTCCCAC 59.963 50.000 0.00 0.00 0.00 4.61
57 58 2.325484 GCCCTTTTCTTTTTCCTCCCA 58.675 47.619 0.00 0.00 0.00 4.37
58 59 2.325484 TGCCCTTTTCTTTTTCCTCCC 58.675 47.619 0.00 0.00 0.00 4.30
59 60 4.040339 TGAATGCCCTTTTCTTTTTCCTCC 59.960 41.667 0.00 0.00 0.00 4.30
60 61 5.213891 TGAATGCCCTTTTCTTTTTCCTC 57.786 39.130 0.00 0.00 0.00 3.71
61 62 4.040829 CCTGAATGCCCTTTTCTTTTTCCT 59.959 41.667 0.00 0.00 0.00 3.36
62 63 4.318332 CCTGAATGCCCTTTTCTTTTTCC 58.682 43.478 0.00 0.00 0.00 3.13
63 64 3.748048 GCCTGAATGCCCTTTTCTTTTTC 59.252 43.478 0.00 0.00 0.00 2.29
64 65 3.392285 AGCCTGAATGCCCTTTTCTTTTT 59.608 39.130 0.00 0.00 0.00 1.94
65 66 2.974794 AGCCTGAATGCCCTTTTCTTTT 59.025 40.909 0.00 0.00 0.00 2.27
66 67 2.301009 CAGCCTGAATGCCCTTTTCTTT 59.699 45.455 0.00 0.00 0.00 2.52
67 68 1.897802 CAGCCTGAATGCCCTTTTCTT 59.102 47.619 0.00 0.00 0.00 2.52
68 69 1.553706 CAGCCTGAATGCCCTTTTCT 58.446 50.000 0.00 0.00 0.00 2.52
69 70 0.533951 CCAGCCTGAATGCCCTTTTC 59.466 55.000 0.00 0.00 0.00 2.29
70 71 0.906282 CCCAGCCTGAATGCCCTTTT 60.906 55.000 0.00 0.00 0.00 2.27
71 72 1.305549 CCCAGCCTGAATGCCCTTT 60.306 57.895 0.00 0.00 0.00 3.11
72 73 2.361771 CCCAGCCTGAATGCCCTT 59.638 61.111 0.00 0.00 0.00 3.95
73 74 4.453892 GCCCAGCCTGAATGCCCT 62.454 66.667 0.00 0.00 0.00 5.19
74 75 4.453892 AGCCCAGCCTGAATGCCC 62.454 66.667 0.00 0.00 0.00 5.36
75 76 3.145551 CAGCCCAGCCTGAATGCC 61.146 66.667 0.00 0.00 34.77 4.40
76 77 3.834799 GCAGCCCAGCCTGAATGC 61.835 66.667 0.00 0.00 34.77 3.56
77 78 1.735376 GATGCAGCCCAGCCTGAATG 61.735 60.000 0.00 0.00 31.10 2.67
78 79 1.455217 GATGCAGCCCAGCCTGAAT 60.455 57.895 0.00 0.00 33.70 2.57
79 80 2.044650 GATGCAGCCCAGCCTGAA 60.045 61.111 0.00 0.00 34.77 3.02
80 81 4.119363 GGATGCAGCCCAGCCTGA 62.119 66.667 10.76 0.00 46.57 3.86
84 85 3.834799 GCTTGGATGCAGCCCAGC 61.835 66.667 28.61 28.61 34.77 4.85
89 90 0.672342 CCATTAGGCTTGGATGCAGC 59.328 55.000 0.00 0.00 36.26 5.25
90 91 1.325355 CCCATTAGGCTTGGATGCAG 58.675 55.000 6.80 0.00 36.26 4.41
91 92 3.518766 CCCATTAGGCTTGGATGCA 57.481 52.632 6.80 0.00 36.26 3.96
109 110 2.592861 CTAGAATGGGCCGGCAGC 60.593 66.667 30.85 12.08 42.60 5.25
110 111 2.592861 GCTAGAATGGGCCGGCAG 60.593 66.667 30.85 16.31 0.00 4.85
111 112 4.545706 CGCTAGAATGGGCCGGCA 62.546 66.667 30.85 9.36 0.00 5.69
113 114 2.377628 TTAGCGCTAGAATGGGCCGG 62.378 60.000 17.98 0.00 45.35 6.13
114 115 1.069090 TTAGCGCTAGAATGGGCCG 59.931 57.895 17.98 0.00 45.35 6.13
115 116 0.885150 GGTTAGCGCTAGAATGGGCC 60.885 60.000 17.98 0.00 45.35 5.80
116 117 0.179056 TGGTTAGCGCTAGAATGGGC 60.179 55.000 17.98 3.50 44.71 5.36
117 118 1.871080 CTGGTTAGCGCTAGAATGGG 58.129 55.000 17.98 3.80 0.00 4.00
118 119 1.221414 GCTGGTTAGCGCTAGAATGG 58.779 55.000 17.98 9.27 40.67 3.16
138 139 3.633094 TTCGCCTCGACAGCTGCTC 62.633 63.158 15.27 9.81 34.89 4.26
139 140 3.684990 TTCGCCTCGACAGCTGCT 61.685 61.111 15.27 0.00 34.89 4.24
140 141 3.482783 GTTCGCCTCGACAGCTGC 61.483 66.667 15.27 5.81 34.89 5.25
141 142 2.874010 ATCGTTCGCCTCGACAGCTG 62.874 60.000 13.48 13.48 40.07 4.24
142 143 2.600122 GATCGTTCGCCTCGACAGCT 62.600 60.000 1.55 0.00 40.07 4.24
143 144 2.202623 ATCGTTCGCCTCGACAGC 60.203 61.111 0.00 0.00 40.07 4.40
144 145 0.863538 CAGATCGTTCGCCTCGACAG 60.864 60.000 0.00 0.00 40.07 3.51
145 146 1.136774 CAGATCGTTCGCCTCGACA 59.863 57.895 0.00 0.00 40.07 4.35
146 147 0.862283 GACAGATCGTTCGCCTCGAC 60.862 60.000 0.00 0.00 40.07 4.20
147 148 1.428219 GACAGATCGTTCGCCTCGA 59.572 57.895 0.00 0.00 41.45 4.04
148 149 1.586564 GGACAGATCGTTCGCCTCG 60.587 63.158 0.00 0.00 0.00 4.63
149 150 0.108804 TTGGACAGATCGTTCGCCTC 60.109 55.000 0.00 0.00 0.00 4.70
150 151 0.389948 GTTGGACAGATCGTTCGCCT 60.390 55.000 0.00 0.00 0.00 5.52
151 152 0.389948 AGTTGGACAGATCGTTCGCC 60.390 55.000 0.00 0.00 0.00 5.54
152 153 0.992802 GAGTTGGACAGATCGTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
153 154 1.067846 TGGAGTTGGACAGATCGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
154 155 2.231478 TCTGGAGTTGGACAGATCGTTC 59.769 50.000 0.00 0.00 38.71 3.95
155 156 2.248248 TCTGGAGTTGGACAGATCGTT 58.752 47.619 0.00 0.00 38.71 3.85
156 157 1.924731 TCTGGAGTTGGACAGATCGT 58.075 50.000 0.00 0.00 38.71 3.73
160 161 4.705110 TGAAAATCTGGAGTTGGACAGA 57.295 40.909 0.00 0.00 46.62 3.41
161 162 4.022849 GGTTGAAAATCTGGAGTTGGACAG 60.023 45.833 0.00 0.00 36.07 3.51
162 163 3.888930 GGTTGAAAATCTGGAGTTGGACA 59.111 43.478 0.00 0.00 0.00 4.02
163 164 3.888930 TGGTTGAAAATCTGGAGTTGGAC 59.111 43.478 0.00 0.00 0.00 4.02
164 165 4.141274 TCTGGTTGAAAATCTGGAGTTGGA 60.141 41.667 0.00 0.00 0.00 3.53
165 166 4.144297 TCTGGTTGAAAATCTGGAGTTGG 58.856 43.478 0.00 0.00 0.00 3.77
166 167 5.766222 CTTCTGGTTGAAAATCTGGAGTTG 58.234 41.667 0.00 0.00 33.79 3.16
167 168 4.279420 GCTTCTGGTTGAAAATCTGGAGTT 59.721 41.667 0.00 0.00 34.26 3.01
168 169 3.823304 GCTTCTGGTTGAAAATCTGGAGT 59.177 43.478 0.00 0.00 34.26 3.85
169 170 4.077822 AGCTTCTGGTTGAAAATCTGGAG 58.922 43.478 0.00 0.00 34.83 3.86
170 171 3.822735 CAGCTTCTGGTTGAAAATCTGGA 59.177 43.478 0.00 0.00 33.79 3.86
171 172 3.057033 CCAGCTTCTGGTTGAAAATCTGG 60.057 47.826 4.74 0.00 45.82 3.86
172 173 4.170292 CCAGCTTCTGGTTGAAAATCTG 57.830 45.455 4.74 0.00 45.82 2.90
189 190 2.341176 CCAAAACCAGCAGCCAGC 59.659 61.111 0.00 0.00 46.19 4.85
190 191 3.053828 CCCAAAACCAGCAGCCAG 58.946 61.111 0.00 0.00 0.00 4.85
191 192 3.233231 GCCCAAAACCAGCAGCCA 61.233 61.111 0.00 0.00 0.00 4.75
192 193 2.322638 TTTGCCCAAAACCAGCAGCC 62.323 55.000 0.00 0.00 37.89 4.85
193 194 0.881600 CTTTGCCCAAAACCAGCAGC 60.882 55.000 0.00 0.00 37.89 5.25
194 195 0.249996 CCTTTGCCCAAAACCAGCAG 60.250 55.000 0.00 0.00 37.89 4.24
195 196 0.689080 TCCTTTGCCCAAAACCAGCA 60.689 50.000 0.00 0.00 33.97 4.41
196 197 0.033920 CTCCTTTGCCCAAAACCAGC 59.966 55.000 0.00 0.00 0.00 4.85
197 198 1.413118 ACTCCTTTGCCCAAAACCAG 58.587 50.000 0.00 0.00 0.00 4.00
198 199 1.484240 CAACTCCTTTGCCCAAAACCA 59.516 47.619 0.00 0.00 0.00 3.67
199 200 1.760029 TCAACTCCTTTGCCCAAAACC 59.240 47.619 0.00 0.00 34.88 3.27
200 201 2.224042 CCTCAACTCCTTTGCCCAAAAC 60.224 50.000 0.00 0.00 34.88 2.43
201 202 2.038659 CCTCAACTCCTTTGCCCAAAA 58.961 47.619 0.00 0.00 34.88 2.44
202 203 1.216678 TCCTCAACTCCTTTGCCCAAA 59.783 47.619 0.00 0.00 34.88 3.28
203 204 0.850100 TCCTCAACTCCTTTGCCCAA 59.150 50.000 0.00 0.00 34.88 4.12
204 205 0.401738 CTCCTCAACTCCTTTGCCCA 59.598 55.000 0.00 0.00 34.88 5.36
205 206 0.402121 ACTCCTCAACTCCTTTGCCC 59.598 55.000 0.00 0.00 34.88 5.36
206 207 2.278332 AACTCCTCAACTCCTTTGCC 57.722 50.000 0.00 0.00 34.88 4.52
207 208 3.214328 TCAAACTCCTCAACTCCTTTGC 58.786 45.455 0.00 0.00 34.88 3.68
208 209 3.817647 CCTCAAACTCCTCAACTCCTTTG 59.182 47.826 0.00 0.00 36.42 2.77
209 210 3.748989 GCCTCAAACTCCTCAACTCCTTT 60.749 47.826 0.00 0.00 0.00 3.11
210 211 2.224646 GCCTCAAACTCCTCAACTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
211 212 1.349357 GCCTCAAACTCCTCAACTCCT 59.651 52.381 0.00 0.00 0.00 3.69
212 213 1.349357 AGCCTCAAACTCCTCAACTCC 59.651 52.381 0.00 0.00 0.00 3.85
213 214 2.224402 ACAGCCTCAAACTCCTCAACTC 60.224 50.000 0.00 0.00 0.00 3.01
214 215 1.771255 ACAGCCTCAAACTCCTCAACT 59.229 47.619 0.00 0.00 0.00 3.16
215 216 1.876156 CACAGCCTCAAACTCCTCAAC 59.124 52.381 0.00 0.00 0.00 3.18
216 217 1.202806 CCACAGCCTCAAACTCCTCAA 60.203 52.381 0.00 0.00 0.00 3.02
217 218 0.397941 CCACAGCCTCAAACTCCTCA 59.602 55.000 0.00 0.00 0.00 3.86
218 219 0.687354 TCCACAGCCTCAAACTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
219 220 0.689623 CTCCACAGCCTCAAACTCCT 59.310 55.000 0.00 0.00 0.00 3.69
220 221 0.322008 CCTCCACAGCCTCAAACTCC 60.322 60.000 0.00 0.00 0.00 3.85
221 222 0.322008 CCCTCCACAGCCTCAAACTC 60.322 60.000 0.00 0.00 0.00 3.01
222 223 1.763770 CCCTCCACAGCCTCAAACT 59.236 57.895 0.00 0.00 0.00 2.66
223 224 1.973812 GCCCTCCACAGCCTCAAAC 60.974 63.158 0.00 0.00 0.00 2.93
224 225 0.840288 TAGCCCTCCACAGCCTCAAA 60.840 55.000 0.00 0.00 0.00 2.69
225 226 1.229496 TAGCCCTCCACAGCCTCAA 60.229 57.895 0.00 0.00 0.00 3.02
226 227 1.990060 GTAGCCCTCCACAGCCTCA 60.990 63.158 0.00 0.00 0.00 3.86
227 228 2.736826 GGTAGCCCTCCACAGCCTC 61.737 68.421 0.00 0.00 0.00 4.70
228 229 2.689034 GGTAGCCCTCCACAGCCT 60.689 66.667 0.00 0.00 0.00 4.58
229 230 4.162690 CGGTAGCCCTCCACAGCC 62.163 72.222 0.00 0.00 0.00 4.85
230 231 2.656069 TTCGGTAGCCCTCCACAGC 61.656 63.158 0.00 0.00 0.00 4.40
231 232 1.218316 GTTCGGTAGCCCTCCACAG 59.782 63.158 0.00 0.00 0.00 3.66
232 233 1.534476 TGTTCGGTAGCCCTCCACA 60.534 57.895 0.00 0.00 0.00 4.17
233 234 1.218316 CTGTTCGGTAGCCCTCCAC 59.782 63.158 0.00 0.00 0.00 4.02
234 235 1.987855 CCTGTTCGGTAGCCCTCCA 60.988 63.158 0.00 0.00 0.00 3.86
235 236 2.901042 CCTGTTCGGTAGCCCTCC 59.099 66.667 0.00 0.00 0.00 4.30
236 237 2.187163 GCCTGTTCGGTAGCCCTC 59.813 66.667 0.00 0.00 34.25 4.30
237 238 3.400054 GGCCTGTTCGGTAGCCCT 61.400 66.667 0.00 0.00 39.60 5.19
239 240 1.619807 TTAGGGCCTGTTCGGTAGCC 61.620 60.000 18.53 0.00 44.99 3.93
240 241 0.251073 TTTAGGGCCTGTTCGGTAGC 59.749 55.000 18.53 0.00 34.25 3.58
241 242 1.276989 TGTTTAGGGCCTGTTCGGTAG 59.723 52.381 18.53 0.00 34.25 3.18
242 243 1.350071 TGTTTAGGGCCTGTTCGGTA 58.650 50.000 18.53 0.00 34.25 4.02
243 244 0.696501 ATGTTTAGGGCCTGTTCGGT 59.303 50.000 18.53 0.00 34.25 4.69
244 245 1.094785 CATGTTTAGGGCCTGTTCGG 58.905 55.000 18.53 0.00 0.00 4.30
245 246 0.451783 GCATGTTTAGGGCCTGTTCG 59.548 55.000 18.53 0.41 0.00 3.95
246 247 1.474077 CTGCATGTTTAGGGCCTGTTC 59.526 52.381 18.53 6.52 0.00 3.18
247 248 1.075374 TCTGCATGTTTAGGGCCTGTT 59.925 47.619 18.53 0.00 0.00 3.16
248 249 0.698238 TCTGCATGTTTAGGGCCTGT 59.302 50.000 18.53 0.00 0.00 4.00
249 250 1.679680 CATCTGCATGTTTAGGGCCTG 59.320 52.381 18.53 0.00 0.00 4.85
250 251 1.410648 CCATCTGCATGTTTAGGGCCT 60.411 52.381 12.58 12.58 0.00 5.19
251 252 1.035139 CCATCTGCATGTTTAGGGCC 58.965 55.000 0.00 0.00 0.00 5.80
252 253 1.035139 CCCATCTGCATGTTTAGGGC 58.965 55.000 0.00 0.00 0.00 5.19
253 254 1.035139 GCCCATCTGCATGTTTAGGG 58.965 55.000 7.68 7.68 37.87 3.53
254 255 1.035139 GGCCCATCTGCATGTTTAGG 58.965 55.000 0.00 0.00 0.00 2.69
255 256 1.766494 TGGCCCATCTGCATGTTTAG 58.234 50.000 0.00 0.00 0.00 1.85
256 257 2.431419 CAATGGCCCATCTGCATGTTTA 59.569 45.455 0.00 0.00 0.00 2.01
257 258 1.208535 CAATGGCCCATCTGCATGTTT 59.791 47.619 0.00 0.00 0.00 2.83
258 259 0.828022 CAATGGCCCATCTGCATGTT 59.172 50.000 0.00 0.00 0.00 2.71
259 260 0.324923 ACAATGGCCCATCTGCATGT 60.325 50.000 0.00 0.00 0.00 3.21
260 261 0.828022 AACAATGGCCCATCTGCATG 59.172 50.000 0.00 0.00 0.00 4.06
261 262 2.313317 CTAACAATGGCCCATCTGCAT 58.687 47.619 0.00 0.00 0.00 3.96
262 263 1.685803 CCTAACAATGGCCCATCTGCA 60.686 52.381 0.00 0.00 0.00 4.41
263 264 1.035139 CCTAACAATGGCCCATCTGC 58.965 55.000 0.00 0.00 0.00 4.26
264 265 1.035139 GCCTAACAATGGCCCATCTG 58.965 55.000 0.00 0.39 44.32 2.90
265 266 3.520623 GCCTAACAATGGCCCATCT 57.479 52.632 0.00 0.00 44.32 2.90
271 272 1.032114 AGAAGGCGCCTAACAATGGC 61.032 55.000 33.07 11.50 46.42 4.40
272 273 1.017387 GAGAAGGCGCCTAACAATGG 58.983 55.000 33.07 0.00 0.00 3.16
273 274 1.936547 GAGAGAAGGCGCCTAACAATG 59.063 52.381 33.07 0.00 0.00 2.82
274 275 1.555075 TGAGAGAAGGCGCCTAACAAT 59.445 47.619 33.07 14.71 0.00 2.71
275 276 0.973632 TGAGAGAAGGCGCCTAACAA 59.026 50.000 33.07 11.04 0.00 2.83
276 277 0.246635 GTGAGAGAAGGCGCCTAACA 59.753 55.000 33.07 21.18 0.00 2.41
277 278 0.246635 TGTGAGAGAAGGCGCCTAAC 59.753 55.000 33.07 25.91 0.00 2.34
278 279 0.532573 CTGTGAGAGAAGGCGCCTAA 59.467 55.000 33.07 8.63 0.00 2.69
279 280 1.323271 CCTGTGAGAGAAGGCGCCTA 61.323 60.000 33.07 10.49 0.00 3.93
280 281 2.654079 CCTGTGAGAGAAGGCGCCT 61.654 63.158 27.08 27.08 0.00 5.52
281 282 2.125350 CCTGTGAGAGAAGGCGCC 60.125 66.667 21.89 21.89 0.00 6.53
285 286 1.515020 CGAGGCCTGTGAGAGAAGG 59.485 63.158 12.00 0.00 36.58 3.46
286 287 1.153667 GCGAGGCCTGTGAGAGAAG 60.154 63.158 12.00 0.00 0.00 2.85
287 288 2.973899 GCGAGGCCTGTGAGAGAA 59.026 61.111 12.00 0.00 0.00 2.87
288 289 3.443925 CGCGAGGCCTGTGAGAGA 61.444 66.667 12.00 0.00 0.00 3.10
289 290 3.691744 GACGCGAGGCCTGTGAGAG 62.692 68.421 12.00 2.84 0.00 3.20
290 291 3.749064 GACGCGAGGCCTGTGAGA 61.749 66.667 12.00 0.00 0.00 3.27
313 314 5.277538 CCTGTTTGACGAGAGAAAAAGGAAG 60.278 44.000 0.00 0.00 0.00 3.46
553 556 3.296054 GCGAGATCGGATCGGGGT 61.296 66.667 12.08 0.00 40.50 4.95
579 584 0.676736 GAGGAATCGAGCGGAAGGAT 59.323 55.000 0.00 0.00 0.00 3.24
649 654 1.515519 CTTCCGCGGACGAATCGAA 60.516 57.895 31.19 9.90 43.93 3.71
711 716 1.227853 GATACGGCACCCCATGGAC 60.228 63.158 15.22 0.00 34.81 4.02
792 797 1.502231 CCCCTTACGAATCATCAGCG 58.498 55.000 0.00 0.00 0.00 5.18
849 857 1.674611 CGGACATCTCGTGACGCAAC 61.675 60.000 0.00 0.00 0.00 4.17
889 897 1.870055 AAAGCAGCCAATCCAGCACG 61.870 55.000 0.00 0.00 0.00 5.34
1029 1037 2.906897 AGCCTTGTGTTGCCACCG 60.907 61.111 0.00 0.00 41.09 4.94
1032 1040 1.163420 CGTACAGCCTTGTGTTGCCA 61.163 55.000 0.00 0.00 38.23 4.92
1122 1130 1.632409 TGGCTGAGAGGAATTCTGCTT 59.368 47.619 5.23 0.00 38.89 3.91
1209 1217 6.775594 AGTTCAGCTTTAGTTCCACTTTTT 57.224 33.333 0.00 0.00 0.00 1.94
1210 1218 7.875327 TTAGTTCAGCTTTAGTTCCACTTTT 57.125 32.000 0.00 0.00 0.00 2.27
1211 1219 7.875327 TTTAGTTCAGCTTTAGTTCCACTTT 57.125 32.000 0.00 0.00 0.00 2.66
1212 1220 7.466860 CGTTTTAGTTCAGCTTTAGTTCCACTT 60.467 37.037 0.00 0.00 0.00 3.16
1213 1221 6.018180 CGTTTTAGTTCAGCTTTAGTTCCACT 60.018 38.462 0.00 0.00 0.00 4.00
1214 1222 6.018507 TCGTTTTAGTTCAGCTTTAGTTCCAC 60.019 38.462 0.00 0.00 0.00 4.02
1215 1223 6.018507 GTCGTTTTAGTTCAGCTTTAGTTCCA 60.019 38.462 0.00 0.00 0.00 3.53
1216 1224 6.361114 GTCGTTTTAGTTCAGCTTTAGTTCC 58.639 40.000 0.00 0.00 0.00 3.62
1217 1225 6.018507 TGGTCGTTTTAGTTCAGCTTTAGTTC 60.019 38.462 0.00 0.00 0.00 3.01
1218 1226 5.818857 TGGTCGTTTTAGTTCAGCTTTAGTT 59.181 36.000 0.00 0.00 0.00 2.24
1219 1227 5.362263 TGGTCGTTTTAGTTCAGCTTTAGT 58.638 37.500 0.00 0.00 0.00 2.24
1220 1228 5.917541 TGGTCGTTTTAGTTCAGCTTTAG 57.082 39.130 0.00 0.00 0.00 1.85
1221 1229 5.992829 TCATGGTCGTTTTAGTTCAGCTTTA 59.007 36.000 0.00 0.00 0.00 1.85
1222 1230 4.819630 TCATGGTCGTTTTAGTTCAGCTTT 59.180 37.500 0.00 0.00 0.00 3.51
1223 1231 4.213482 GTCATGGTCGTTTTAGTTCAGCTT 59.787 41.667 0.00 0.00 0.00 3.74
1224 1232 3.746492 GTCATGGTCGTTTTAGTTCAGCT 59.254 43.478 0.00 0.00 0.00 4.24
1225 1233 3.496884 TGTCATGGTCGTTTTAGTTCAGC 59.503 43.478 0.00 0.00 0.00 4.26
1226 1234 4.750098 AGTGTCATGGTCGTTTTAGTTCAG 59.250 41.667 0.00 0.00 0.00 3.02
1227 1235 4.699637 AGTGTCATGGTCGTTTTAGTTCA 58.300 39.130 0.00 0.00 0.00 3.18
1228 1236 5.668558 AAGTGTCATGGTCGTTTTAGTTC 57.331 39.130 0.00 0.00 0.00 3.01
1229 1237 6.445357 AAAAGTGTCATGGTCGTTTTAGTT 57.555 33.333 0.00 0.00 0.00 2.24
1230 1238 6.445357 AAAAAGTGTCATGGTCGTTTTAGT 57.555 33.333 0.00 0.00 0.00 2.24
1251 1259 4.884668 ACTACTCACTCCGATCCAAAAA 57.115 40.909 0.00 0.00 0.00 1.94
1252 1260 4.884668 AACTACTCACTCCGATCCAAAA 57.115 40.909 0.00 0.00 0.00 2.44
1253 1261 4.527038 AGAAACTACTCACTCCGATCCAAA 59.473 41.667 0.00 0.00 0.00 3.28
1254 1262 4.087182 AGAAACTACTCACTCCGATCCAA 58.913 43.478 0.00 0.00 0.00 3.53
1255 1263 3.698289 AGAAACTACTCACTCCGATCCA 58.302 45.455 0.00 0.00 0.00 3.41
1256 1264 4.674475 GAAGAAACTACTCACTCCGATCC 58.326 47.826 0.00 0.00 0.00 3.36
1257 1265 4.142643 ACGAAGAAACTACTCACTCCGATC 60.143 45.833 0.00 0.00 0.00 3.69
1258 1266 3.757493 ACGAAGAAACTACTCACTCCGAT 59.243 43.478 0.00 0.00 0.00 4.18
1259 1267 3.144506 ACGAAGAAACTACTCACTCCGA 58.855 45.455 0.00 0.00 0.00 4.55
1260 1268 3.555917 ACGAAGAAACTACTCACTCCG 57.444 47.619 0.00 0.00 0.00 4.63
1261 1269 7.081526 TGTATACGAAGAAACTACTCACTCC 57.918 40.000 0.00 0.00 0.00 3.85
1262 1270 7.693120 CACTGTATACGAAGAAACTACTCACTC 59.307 40.741 0.00 0.00 0.00 3.51
1263 1271 7.361885 CCACTGTATACGAAGAAACTACTCACT 60.362 40.741 0.00 0.00 0.00 3.41
1264 1272 6.746364 CCACTGTATACGAAGAAACTACTCAC 59.254 42.308 0.00 0.00 0.00 3.51
1265 1273 6.656270 TCCACTGTATACGAAGAAACTACTCA 59.344 38.462 0.00 0.00 0.00 3.41
1266 1274 7.081526 TCCACTGTATACGAAGAAACTACTC 57.918 40.000 0.00 0.00 0.00 2.59
1267 1275 7.122353 ACATCCACTGTATACGAAGAAACTACT 59.878 37.037 0.00 0.00 35.91 2.57
1268 1276 7.256286 ACATCCACTGTATACGAAGAAACTAC 58.744 38.462 0.00 0.00 35.91 2.73
1269 1277 7.400599 ACATCCACTGTATACGAAGAAACTA 57.599 36.000 0.00 0.00 35.91 2.24
1270 1278 6.282199 ACATCCACTGTATACGAAGAAACT 57.718 37.500 0.00 0.00 35.91 2.66
1287 1295 7.905265 ACATGAAACCAATCAAAATACATCCA 58.095 30.769 0.00 0.00 32.06 3.41
1324 1337 8.703604 TGACTAGAAGCTAAATCACACATAAC 57.296 34.615 0.00 0.00 0.00 1.89
1343 1356 5.163814 GCAAAGCACAGACCTATTTGACTAG 60.164 44.000 0.00 0.00 33.69 2.57
1413 1428 3.940209 TGACATTGGGTGCAAGAAATC 57.060 42.857 0.00 0.00 0.00 2.17
1444 1466 2.097825 GAATGCCATTGCCTCAGAGTT 58.902 47.619 0.00 0.00 36.33 3.01
1493 1515 3.919216 AGAGAACAATGTTGAGAGACCG 58.081 45.455 2.20 0.00 0.00 4.79
1517 1540 2.243810 TGGTACAAGAAACAATGGGGC 58.756 47.619 0.00 0.00 31.92 5.80
1568 1591 7.175641 ACCTTCAACAAGATCATCCAAGTTAAG 59.824 37.037 0.00 0.00 0.00 1.85
1880 1903 4.462483 AGTCAAAACAAGGTGAAAAGAGCA 59.538 37.500 0.00 0.00 0.00 4.26
1929 1953 2.502745 AGGAAAGGAGGGGCATCAATA 58.497 47.619 0.00 0.00 0.00 1.90
1947 1971 9.566432 AACTCCTGCAATAAGATTTATAGAAGG 57.434 33.333 0.00 0.00 0.00 3.46
2104 2132 5.189180 AGGGCAAATAACAAAAGCACAAAA 58.811 33.333 0.00 0.00 0.00 2.44
2108 2136 3.745975 GGAAGGGCAAATAACAAAAGCAC 59.254 43.478 0.00 0.00 0.00 4.40
2142 2170 2.404215 CCACGCGGAACCTATAATGAG 58.596 52.381 12.47 0.00 0.00 2.90
2247 2275 0.948678 TCCCACAGTTAAAGCAACGC 59.051 50.000 0.00 0.00 42.35 4.84
2286 2314 2.669569 TCGCCAGCTTTGCAGTCC 60.670 61.111 5.87 0.00 0.00 3.85
2313 2341 1.204704 TCTCCACAACGATAGCACCTG 59.795 52.381 0.00 0.00 42.67 4.00
2358 2386 2.567615 GAGGTTCTTAGGGCTGTTCTGA 59.432 50.000 0.00 0.00 0.00 3.27
2394 2422 6.619801 ATGTGTAGAACAGAAAAGACAACC 57.380 37.500 0.00 0.00 43.64 3.77
2413 2442 7.783090 AAAGTCAGATATGCTCACTTATGTG 57.217 36.000 2.36 2.36 45.07 3.21
2415 2444 9.539825 AACTAAAGTCAGATATGCTCACTTATG 57.460 33.333 0.00 0.00 0.00 1.90
2419 2448 7.880195 ACAAAACTAAAGTCAGATATGCTCACT 59.120 33.333 0.00 0.00 0.00 3.41
2420 2449 8.034058 ACAAAACTAAAGTCAGATATGCTCAC 57.966 34.615 0.00 0.00 0.00 3.51
2421 2450 8.506437 CAACAAAACTAAAGTCAGATATGCTCA 58.494 33.333 0.00 0.00 0.00 4.26
2442 2471 2.425312 ACGCCTGTGTTTTCATCAACAA 59.575 40.909 0.00 0.00 38.40 2.83
2454 2483 0.180406 AACTCTTTCCACGCCTGTGT 59.820 50.000 0.00 0.00 44.92 3.72
2455 2484 1.798813 GTAACTCTTTCCACGCCTGTG 59.201 52.381 0.00 0.00 46.00 3.66
2570 2602 4.452455 CACAGAATAAGAAGAAACGGTGCT 59.548 41.667 0.00 0.00 0.00 4.40
2582 2614 4.166725 AGGGAATCATGCCACAGAATAAGA 59.833 41.667 0.00 0.00 40.09 2.10
2627 2659 7.703058 TGACAGTACTATGATCAGAACTCAA 57.297 36.000 0.09 0.00 0.00 3.02
2631 2663 9.593134 AAAGAATGACAGTACTATGATCAGAAC 57.407 33.333 0.09 0.00 0.00 3.01
2658 2690 5.444663 AAGAGGCTTTAGTTTGCAAGAAG 57.555 39.130 0.00 4.61 0.00 2.85
2787 2819 9.461312 TTCAGCAGGTTAGTAAAATGTATGAAT 57.539 29.630 10.77 0.00 0.00 2.57
3047 3290 3.114616 CTTGGGCTGCGACTGTCG 61.115 66.667 24.78 24.78 43.89 4.35
3107 3350 0.108186 TCATAGGGCTGCGACTGTTG 60.108 55.000 5.84 0.00 0.00 3.33
3108 3351 0.613260 TTCATAGGGCTGCGACTGTT 59.387 50.000 5.84 0.00 0.00 3.16
3173 3446 2.123683 CTCCTCCTAGGGCTGCGA 60.124 66.667 9.46 0.00 35.59 5.10
3191 3464 2.115910 CCCTTGGCAGGTGAAGCA 59.884 61.111 0.00 0.00 38.79 3.91
3260 3533 0.991146 TCATTGGGCTCCTGCTGTTA 59.009 50.000 0.00 0.00 39.59 2.41
3296 3569 1.980772 GGCAGCTGGGCTCATGTTT 60.981 57.895 17.12 0.00 36.40 2.83
3314 3587 0.811616 GGCTCAGGCTACGACCATTG 60.812 60.000 0.00 0.00 38.73 2.82
3421 3695 1.215423 AGTTCCACTGGGTGAAAGCTT 59.785 47.619 0.00 0.00 35.23 3.74
3424 3698 0.954452 GCAGTTCCACTGGGTGAAAG 59.046 55.000 6.05 0.00 46.01 2.62
3425 3699 0.257328 TGCAGTTCCACTGGGTGAAA 59.743 50.000 6.05 0.00 46.01 2.69
3440 3714 1.077930 CCCTCACCAGGTGATGCAG 60.078 63.158 23.21 10.97 41.94 4.41
3486 3760 6.575162 ACATGTTTGGAGAGTTTCATAACC 57.425 37.500 0.00 0.00 34.71 2.85
3703 3995 2.489938 TGTTTCCCCTCCATCTTTCG 57.510 50.000 0.00 0.00 0.00 3.46
3777 4070 5.738108 AGATGAACCCATATGGCCCTATATT 59.262 40.000 16.97 1.40 37.83 1.28
3783 4076 1.915141 CAGATGAACCCATATGGCCC 58.085 55.000 16.97 7.67 38.11 5.80
3932 4228 1.162698 CTGGACTACTCCGACGTGAA 58.837 55.000 0.00 0.00 39.88 3.18
3944 4240 1.379443 ATCACGACGGGCTGGACTA 60.379 57.895 0.00 0.00 0.00 2.59
3952 4248 3.186047 GCGGTTGATCACGACGGG 61.186 66.667 9.68 0.00 33.25 5.28
3959 4255 0.737367 CAGAGAAGCGCGGTTGATCA 60.737 55.000 30.19 0.00 0.00 2.92
3960 4256 0.458543 TCAGAGAAGCGCGGTTGATC 60.459 55.000 30.19 23.88 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.