Multiple sequence alignment - TraesCS3D01G134400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G134400 chr3D 100.000 4947 0 0 1 4947 93478427 93483373 0.000000e+00 9136.0
1 TraesCS3D01G134400 chr3B 93.653 4207 185 37 656 4806 142724803 142720623 0.000000e+00 6215.0
2 TraesCS3D01G134400 chr3B 90.833 240 12 9 241 473 142725162 142724926 3.720000e-81 313.0
3 TraesCS3D01G134400 chr3B 97.917 144 3 0 4804 4947 142720509 142720366 2.960000e-62 250.0
4 TraesCS3D01G134400 chr3B 98.387 62 1 0 3552 3613 142721806 142721745 5.240000e-20 110.0
5 TraesCS3D01G134400 chr3A 94.723 3923 159 19 666 4562 546574780 546570880 0.000000e+00 6054.0
6 TraesCS3D01G134400 chr3A 91.892 333 22 3 4408 4739 546571004 546570676 1.250000e-125 460.0
7 TraesCS3D01G134400 chr3A 93.720 207 13 0 1 207 706061440 706061234 1.340000e-80 311.0
8 TraesCS3D01G134400 chr3A 94.089 203 12 0 1 203 24995068 24995270 4.810000e-80 309.0
9 TraesCS3D01G134400 chr3A 88.889 216 12 9 4737 4947 546570583 546570375 6.350000e-64 255.0
10 TraesCS3D01G134400 chr3A 91.429 175 7 4 300 473 546575048 546574881 2.980000e-57 233.0
11 TraesCS3D01G134400 chr3A 85.782 211 25 3 1 207 25540671 25540462 8.340000e-53 219.0
12 TraesCS3D01G134400 chr5A 74.799 869 166 36 2698 3530 691813208 691814059 4.740000e-90 342.0
13 TraesCS3D01G134400 chr5A 87.654 81 10 0 3078 3158 8904690 8904610 1.470000e-15 95.3
14 TraesCS3D01G134400 chr4B 74.497 894 176 36 2698 3555 654130677 654131554 1.710000e-89 340.0
15 TraesCS3D01G134400 chr4B 76.641 655 124 22 2698 3331 654125442 654126088 7.930000e-88 335.0
16 TraesCS3D01G134400 chr4B 73.385 898 173 45 2698 3550 638987514 638988390 1.750000e-69 274.0
17 TraesCS3D01G134400 chr7B 91.701 241 16 3 1 239 707530674 707530912 1.030000e-86 331.0
18 TraesCS3D01G134400 chr7B 93.689 206 13 0 1 206 738782709 738782504 4.810000e-80 309.0
19 TraesCS3D01G134400 chr2D 76.170 684 122 27 2676 3331 602008612 602009282 6.180000e-84 322.0
20 TraesCS3D01G134400 chr2B 76.248 661 118 26 2698 3331 732223643 732224291 1.030000e-81 315.0
21 TraesCS3D01G134400 chr4D 74.053 898 173 42 2698 3550 497666651 497667533 3.720000e-81 313.0
22 TraesCS3D01G134400 chr4D 93.237 207 14 0 1 207 114426680 114426474 6.220000e-79 305.0
23 TraesCS3D01G134400 chr4D 84.766 256 25 8 1 243 382740269 382740523 1.380000e-60 244.0
24 TraesCS3D01G134400 chr2A 94.089 203 12 0 1 203 726299506 726299708 4.810000e-80 309.0
25 TraesCS3D01G134400 chr2A 81.641 256 30 7 1 239 734990102 734990357 3.910000e-46 196.0
26 TraesCS3D01G134400 chr5B 94.089 203 11 1 1 203 691604557 691604758 1.730000e-79 307.0
27 TraesCS3D01G134400 chr5B 93.204 206 14 0 1 206 700196692 700196487 2.240000e-78 303.0
28 TraesCS3D01G134400 chr5B 89.212 241 18 6 1 239 476905288 476905054 1.350000e-75 294.0
29 TraesCS3D01G134400 chr5B 87.342 79 10 0 3080 3158 11306453 11306375 1.900000e-14 91.6
30 TraesCS3D01G134400 chr5B 95.000 40 2 0 207 246 14699224 14699185 4.130000e-06 63.9
31 TraesCS3D01G134400 chr6D 82.824 262 27 6 1 245 38167624 38167884 8.340000e-53 219.0
32 TraesCS3D01G134400 chr6D 82.857 210 31 3 2 207 13074892 13074684 3.040000e-42 183.0
33 TraesCS3D01G134400 chr4A 74.627 536 108 19 2813 3331 731003584 731003060 1.400000e-50 211.0
34 TraesCS3D01G134400 chr5D 81.250 256 31 5 2 240 561800466 561800721 1.820000e-44 191.0
35 TraesCS3D01G134400 chr5D 87.654 81 10 0 3078 3158 10775872 10775952 1.470000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G134400 chr3D 93478427 93483373 4946 False 9136.0 9136 100.00000 1 4947 1 chr3D.!!$F1 4946
1 TraesCS3D01G134400 chr3B 142720366 142725162 4796 True 1722.0 6215 95.19750 241 4947 4 chr3B.!!$R1 4706
2 TraesCS3D01G134400 chr3A 546570375 546575048 4673 True 1750.5 6054 91.73325 300 4947 4 chr3A.!!$R3 4647
3 TraesCS3D01G134400 chr5A 691813208 691814059 851 False 342.0 342 74.79900 2698 3530 1 chr5A.!!$F1 832
4 TraesCS3D01G134400 chr4B 654130677 654131554 877 False 340.0 340 74.49700 2698 3555 1 chr4B.!!$F3 857
5 TraesCS3D01G134400 chr4B 654125442 654126088 646 False 335.0 335 76.64100 2698 3331 1 chr4B.!!$F2 633
6 TraesCS3D01G134400 chr4B 638987514 638988390 876 False 274.0 274 73.38500 2698 3550 1 chr4B.!!$F1 852
7 TraesCS3D01G134400 chr2D 602008612 602009282 670 False 322.0 322 76.17000 2676 3331 1 chr2D.!!$F1 655
8 TraesCS3D01G134400 chr2B 732223643 732224291 648 False 315.0 315 76.24800 2698 3331 1 chr2B.!!$F1 633
9 TraesCS3D01G134400 chr4D 497666651 497667533 882 False 313.0 313 74.05300 2698 3550 1 chr4D.!!$F2 852
10 TraesCS3D01G134400 chr4A 731003060 731003584 524 True 211.0 211 74.62700 2813 3331 1 chr4A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.027979 ACGAAGACGAACGACGAACA 59.972 50.0 0.0 0.0 45.77 3.18 F
183 184 0.034059 CACCAGAGACACACCTCCAC 59.966 60.0 0.0 0.0 33.76 4.02 F
197 198 0.034756 CTCCACACGTCCACCAATGA 59.965 55.0 0.0 0.0 0.00 2.57 F
971 1004 0.035725 TCGTCCCTCTGTCGCTCTTA 60.036 55.0 0.0 0.0 0.00 2.10 F
2204 2259 0.457337 CTGGCGTTCCCGTACTACAC 60.457 60.0 0.0 0.0 35.87 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1007 1040 1.101331 ATGTCCGTCGGAAGTACTCC 58.899 55.000 17.32 1.85 41.40 3.85 R
2143 2189 1.079750 GGTCGAGGTCCTGCTTCAC 60.080 63.158 0.00 0.00 0.00 3.18 R
2144 2190 1.228894 AGGTCGAGGTCCTGCTTCA 60.229 57.895 0.00 0.00 33.62 3.02 R
2476 2534 1.229658 CACCCTCCTCCACCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36 R
4129 4264 1.028905 CTGGTGAGGGTCGAGAGATC 58.971 60.000 0.00 0.00 45.19 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.603231 GTAGTAGACAGTCAGGAAGTCG 57.397 50.000 2.66 0.00 37.36 4.18
22 23 3.143211 AGTAGACAGTCAGGAAGTCGT 57.857 47.619 2.66 0.00 37.36 4.34
23 24 3.075884 AGTAGACAGTCAGGAAGTCGTC 58.924 50.000 2.66 0.00 37.36 4.20
24 25 0.875728 AGACAGTCAGGAAGTCGTCG 59.124 55.000 2.66 0.00 37.36 5.12
25 26 0.592148 GACAGTCAGGAAGTCGTCGT 59.408 55.000 0.00 0.00 0.00 4.34
26 27 0.311165 ACAGTCAGGAAGTCGTCGTG 59.689 55.000 2.49 2.49 42.41 4.35
27 28 1.004277 CAGTCAGGAAGTCGTCGTGC 61.004 60.000 3.89 0.70 41.11 5.34
28 29 1.173444 AGTCAGGAAGTCGTCGTGCT 61.173 55.000 3.89 2.68 41.11 4.40
29 30 0.520404 GTCAGGAAGTCGTCGTGCTA 59.480 55.000 3.89 0.00 41.11 3.49
30 31 1.068748 GTCAGGAAGTCGTCGTGCTAA 60.069 52.381 3.89 0.00 41.11 3.09
31 32 1.199327 TCAGGAAGTCGTCGTGCTAAG 59.801 52.381 3.89 0.00 41.11 2.18
32 33 0.526662 AGGAAGTCGTCGTGCTAAGG 59.473 55.000 0.00 0.00 0.00 2.69
33 34 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
34 35 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
35 36 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
36 37 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
37 38 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
38 39 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
39 40 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
40 41 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
41 42 0.397957 TCGTGCTAAGGCCCCATAGA 60.398 55.000 0.00 0.00 37.74 1.98
42 43 0.468226 CGTGCTAAGGCCCCATAGAA 59.532 55.000 0.00 0.00 37.74 2.10
43 44 1.810412 CGTGCTAAGGCCCCATAGAAC 60.810 57.143 0.00 3.89 37.74 3.01
44 45 0.843984 TGCTAAGGCCCCATAGAACC 59.156 55.000 0.00 0.00 37.74 3.62
45 46 0.843984 GCTAAGGCCCCATAGAACCA 59.156 55.000 0.00 0.00 0.00 3.67
46 47 1.214424 GCTAAGGCCCCATAGAACCAA 59.786 52.381 0.00 0.00 0.00 3.67
47 48 2.932261 CTAAGGCCCCATAGAACCAAC 58.068 52.381 0.00 0.00 0.00 3.77
48 49 0.034477 AAGGCCCCATAGAACCAACG 60.034 55.000 0.00 0.00 0.00 4.10
49 50 2.119029 GGCCCCATAGAACCAACGC 61.119 63.158 0.00 0.00 0.00 4.84
50 51 1.377987 GCCCCATAGAACCAACGCA 60.378 57.895 0.00 0.00 0.00 5.24
51 52 1.654023 GCCCCATAGAACCAACGCAC 61.654 60.000 0.00 0.00 0.00 5.34
52 53 1.029947 CCCCATAGAACCAACGCACC 61.030 60.000 0.00 0.00 0.00 5.01
53 54 0.322098 CCCATAGAACCAACGCACCA 60.322 55.000 0.00 0.00 0.00 4.17
54 55 1.086696 CCATAGAACCAACGCACCAG 58.913 55.000 0.00 0.00 0.00 4.00
55 56 1.338674 CCATAGAACCAACGCACCAGA 60.339 52.381 0.00 0.00 0.00 3.86
56 57 2.422597 CATAGAACCAACGCACCAGAA 58.577 47.619 0.00 0.00 0.00 3.02
57 58 1.873698 TAGAACCAACGCACCAGAAC 58.126 50.000 0.00 0.00 0.00 3.01
58 59 0.107410 AGAACCAACGCACCAGAACA 60.107 50.000 0.00 0.00 0.00 3.18
59 60 0.307760 GAACCAACGCACCAGAACAG 59.692 55.000 0.00 0.00 0.00 3.16
60 61 1.724582 AACCAACGCACCAGAACAGC 61.725 55.000 0.00 0.00 0.00 4.40
61 62 2.186160 CCAACGCACCAGAACAGCA 61.186 57.895 0.00 0.00 0.00 4.41
62 63 1.723608 CCAACGCACCAGAACAGCAA 61.724 55.000 0.00 0.00 0.00 3.91
63 64 0.592247 CAACGCACCAGAACAGCAAC 60.592 55.000 0.00 0.00 0.00 4.17
64 65 0.748005 AACGCACCAGAACAGCAACT 60.748 50.000 0.00 0.00 0.00 3.16
65 66 1.280746 CGCACCAGAACAGCAACTG 59.719 57.895 0.00 0.00 37.52 3.16
66 67 1.008079 GCACCAGAACAGCAACTGC 60.008 57.895 0.00 0.00 42.49 4.40
67 68 1.656441 CACCAGAACAGCAACTGCC 59.344 57.895 0.00 0.00 43.38 4.85
68 69 1.893808 ACCAGAACAGCAACTGCCG 60.894 57.895 0.00 0.00 43.38 5.69
69 70 2.253452 CAGAACAGCAACTGCCGC 59.747 61.111 0.00 0.00 43.38 6.53
70 71 2.203195 AGAACAGCAACTGCCGCA 60.203 55.556 0.00 0.00 43.38 5.69
71 72 2.253452 GAACAGCAACTGCCGCAG 59.747 61.111 19.08 19.08 43.38 5.18
72 73 2.203195 AACAGCAACTGCCGCAGA 60.203 55.556 27.12 0.00 43.38 4.26
73 74 1.580845 GAACAGCAACTGCCGCAGAT 61.581 55.000 27.12 12.78 43.38 2.90
74 75 1.859427 AACAGCAACTGCCGCAGATG 61.859 55.000 27.12 24.67 43.38 2.90
75 76 2.036571 CAGCAACTGCCGCAGATGA 61.037 57.895 29.02 0.00 43.38 2.92
76 77 1.302752 AGCAACTGCCGCAGATGAA 60.303 52.632 29.02 0.00 43.38 2.57
77 78 1.136147 GCAACTGCCGCAGATGAAG 59.864 57.895 29.02 13.98 36.57 3.02
78 79 1.300971 GCAACTGCCGCAGATGAAGA 61.301 55.000 29.02 0.00 36.57 2.87
79 80 0.725686 CAACTGCCGCAGATGAAGAG 59.274 55.000 27.12 0.00 36.57 2.85
80 81 0.322975 AACTGCCGCAGATGAAGAGT 59.677 50.000 27.12 0.00 35.18 3.24
81 82 0.390866 ACTGCCGCAGATGAAGAGTG 60.391 55.000 27.12 0.00 35.18 3.51
82 83 0.390866 CTGCCGCAGATGAAGAGTGT 60.391 55.000 15.74 0.00 32.44 3.55
83 84 0.894835 TGCCGCAGATGAAGAGTGTA 59.105 50.000 0.00 0.00 0.00 2.90
84 85 1.134995 TGCCGCAGATGAAGAGTGTAG 60.135 52.381 0.00 0.00 0.00 2.74
85 86 1.135139 GCCGCAGATGAAGAGTGTAGA 59.865 52.381 0.00 0.00 0.00 2.59
86 87 2.223923 GCCGCAGATGAAGAGTGTAGAT 60.224 50.000 0.00 0.00 0.00 1.98
87 88 3.637432 CCGCAGATGAAGAGTGTAGATC 58.363 50.000 0.00 0.00 0.00 2.75
88 89 3.067320 CCGCAGATGAAGAGTGTAGATCA 59.933 47.826 0.00 0.00 0.00 2.92
89 90 4.440663 CCGCAGATGAAGAGTGTAGATCAA 60.441 45.833 0.00 0.00 0.00 2.57
90 91 5.105063 CGCAGATGAAGAGTGTAGATCAAA 58.895 41.667 0.00 0.00 0.00 2.69
91 92 5.578336 CGCAGATGAAGAGTGTAGATCAAAA 59.422 40.000 0.00 0.00 0.00 2.44
92 93 6.237781 CGCAGATGAAGAGTGTAGATCAAAAG 60.238 42.308 0.00 0.00 0.00 2.27
93 94 6.036953 GCAGATGAAGAGTGTAGATCAAAAGG 59.963 42.308 0.00 0.00 0.00 3.11
94 95 7.326454 CAGATGAAGAGTGTAGATCAAAAGGA 58.674 38.462 0.00 0.00 0.00 3.36
95 96 7.986320 CAGATGAAGAGTGTAGATCAAAAGGAT 59.014 37.037 0.00 0.00 39.53 3.24
108 109 7.089770 GATCAAAAGGATCCAACCTAAAGAC 57.910 40.000 15.82 0.00 45.58 3.01
109 110 5.001232 TCAAAAGGATCCAACCTAAAGACG 58.999 41.667 15.82 0.00 39.62 4.18
110 111 2.693267 AGGATCCAACCTAAAGACGC 57.307 50.000 15.82 0.00 38.65 5.19
111 112 1.906574 AGGATCCAACCTAAAGACGCA 59.093 47.619 15.82 0.00 38.65 5.24
112 113 2.505819 AGGATCCAACCTAAAGACGCAT 59.494 45.455 15.82 0.00 38.65 4.73
113 114 2.614057 GGATCCAACCTAAAGACGCATG 59.386 50.000 6.95 0.00 0.00 4.06
114 115 3.531538 GATCCAACCTAAAGACGCATGA 58.468 45.455 0.00 0.00 0.00 3.07
115 116 3.410631 TCCAACCTAAAGACGCATGAA 57.589 42.857 0.00 0.00 0.00 2.57
116 117 3.071479 TCCAACCTAAAGACGCATGAAC 58.929 45.455 0.00 0.00 0.00 3.18
117 118 2.159707 CCAACCTAAAGACGCATGAACG 60.160 50.000 0.00 0.00 39.50 3.95
118 119 2.734606 CAACCTAAAGACGCATGAACGA 59.265 45.455 0.00 0.00 36.70 3.85
119 120 3.034721 ACCTAAAGACGCATGAACGAA 57.965 42.857 0.00 0.00 36.70 3.85
120 121 2.993899 ACCTAAAGACGCATGAACGAAG 59.006 45.455 0.00 0.00 36.70 3.79
121 122 3.250744 CCTAAAGACGCATGAACGAAGA 58.749 45.455 0.00 0.00 36.70 2.87
122 123 3.060895 CCTAAAGACGCATGAACGAAGAC 59.939 47.826 0.00 0.00 36.70 3.01
123 124 1.060713 AAGACGCATGAACGAAGACG 58.939 50.000 0.00 0.00 45.75 4.18
124 125 0.240145 AGACGCATGAACGAAGACGA 59.760 50.000 0.00 0.00 42.66 4.20
125 126 1.057636 GACGCATGAACGAAGACGAA 58.942 50.000 0.00 0.00 42.66 3.85
126 127 0.782384 ACGCATGAACGAAGACGAAC 59.218 50.000 0.00 0.00 42.66 3.95
127 128 0.246374 CGCATGAACGAAGACGAACG 60.246 55.000 0.00 0.00 42.66 3.95
128 129 1.057636 GCATGAACGAAGACGAACGA 58.942 50.000 0.00 0.00 42.66 3.85
129 130 1.201672 GCATGAACGAAGACGAACGAC 60.202 52.381 0.00 0.00 42.66 4.34
131 132 0.304401 TGAACGAAGACGAACGACGA 59.696 50.000 0.00 0.00 45.77 4.20
132 133 1.267982 TGAACGAAGACGAACGACGAA 60.268 47.619 0.00 0.00 45.77 3.85
133 134 1.115639 AACGAAGACGAACGACGAAC 58.884 50.000 0.00 0.00 45.77 3.95
134 135 0.027979 ACGAAGACGAACGACGAACA 59.972 50.000 0.00 0.00 45.77 3.18
135 136 0.695943 CGAAGACGAACGACGAACAG 59.304 55.000 0.00 0.00 45.77 3.16
136 137 1.658373 CGAAGACGAACGACGAACAGA 60.658 52.381 0.00 0.00 45.77 3.41
137 138 2.582687 GAAGACGAACGACGAACAGAT 58.417 47.619 0.00 0.00 45.77 2.90
138 139 2.244281 AGACGAACGACGAACAGATC 57.756 50.000 0.00 0.00 45.77 2.75
139 140 1.135746 AGACGAACGACGAACAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
140 141 0.594602 ACGAACGACGAACAGATCCA 59.405 50.000 0.00 0.00 45.77 3.41
141 142 1.001048 ACGAACGACGAACAGATCCAA 60.001 47.619 0.00 0.00 45.77 3.53
142 143 1.649171 CGAACGACGAACAGATCCAAG 59.351 52.381 0.00 0.00 45.77 3.61
143 144 1.390463 GAACGACGAACAGATCCAAGC 59.610 52.381 0.00 0.00 0.00 4.01
144 145 0.317160 ACGACGAACAGATCCAAGCA 59.683 50.000 0.00 0.00 0.00 3.91
145 146 1.270094 ACGACGAACAGATCCAAGCAA 60.270 47.619 0.00 0.00 0.00 3.91
146 147 1.798223 CGACGAACAGATCCAAGCAAA 59.202 47.619 0.00 0.00 0.00 3.68
147 148 2.416547 CGACGAACAGATCCAAGCAAAT 59.583 45.455 0.00 0.00 0.00 2.32
148 149 3.484229 CGACGAACAGATCCAAGCAAATC 60.484 47.826 0.00 0.00 0.00 2.17
149 150 2.749621 ACGAACAGATCCAAGCAAATCC 59.250 45.455 0.00 0.00 0.00 3.01
150 151 2.749076 CGAACAGATCCAAGCAAATCCA 59.251 45.455 0.00 0.00 0.00 3.41
151 152 3.426695 CGAACAGATCCAAGCAAATCCAC 60.427 47.826 0.00 0.00 0.00 4.02
152 153 2.450476 ACAGATCCAAGCAAATCCACC 58.550 47.619 0.00 0.00 0.00 4.61
153 154 2.225091 ACAGATCCAAGCAAATCCACCA 60.225 45.455 0.00 0.00 0.00 4.17
154 155 2.827322 CAGATCCAAGCAAATCCACCAA 59.173 45.455 0.00 0.00 0.00 3.67
155 156 3.258872 CAGATCCAAGCAAATCCACCAAA 59.741 43.478 0.00 0.00 0.00 3.28
156 157 3.903090 AGATCCAAGCAAATCCACCAAAA 59.097 39.130 0.00 0.00 0.00 2.44
157 158 4.347583 AGATCCAAGCAAATCCACCAAAAA 59.652 37.500 0.00 0.00 0.00 1.94
158 159 3.802866 TCCAAGCAAATCCACCAAAAAC 58.197 40.909 0.00 0.00 0.00 2.43
159 160 3.198635 TCCAAGCAAATCCACCAAAAACA 59.801 39.130 0.00 0.00 0.00 2.83
160 161 3.560896 CCAAGCAAATCCACCAAAAACAG 59.439 43.478 0.00 0.00 0.00 3.16
161 162 4.440880 CAAGCAAATCCACCAAAAACAGA 58.559 39.130 0.00 0.00 0.00 3.41
162 163 4.961438 AGCAAATCCACCAAAAACAGAT 57.039 36.364 0.00 0.00 0.00 2.90
163 164 4.886579 AGCAAATCCACCAAAAACAGATC 58.113 39.130 0.00 0.00 0.00 2.75
164 165 3.996363 GCAAATCCACCAAAAACAGATCC 59.004 43.478 0.00 0.00 0.00 3.36
165 166 4.502950 GCAAATCCACCAAAAACAGATCCA 60.503 41.667 0.00 0.00 0.00 3.41
166 167 4.871933 AATCCACCAAAAACAGATCCAC 57.128 40.909 0.00 0.00 0.00 4.02
167 168 2.593026 TCCACCAAAAACAGATCCACC 58.407 47.619 0.00 0.00 0.00 4.61
168 169 2.091610 TCCACCAAAAACAGATCCACCA 60.092 45.455 0.00 0.00 0.00 4.17
169 170 2.297033 CCACCAAAAACAGATCCACCAG 59.703 50.000 0.00 0.00 0.00 4.00
170 171 3.221771 CACCAAAAACAGATCCACCAGA 58.778 45.455 0.00 0.00 0.00 3.86
171 172 3.254166 CACCAAAAACAGATCCACCAGAG 59.746 47.826 0.00 0.00 0.00 3.35
172 173 3.138283 ACCAAAAACAGATCCACCAGAGA 59.862 43.478 0.00 0.00 0.00 3.10
173 174 3.503748 CCAAAAACAGATCCACCAGAGAC 59.496 47.826 0.00 0.00 0.00 3.36
174 175 4.136796 CAAAAACAGATCCACCAGAGACA 58.863 43.478 0.00 0.00 0.00 3.41
175 176 3.409026 AAACAGATCCACCAGAGACAC 57.591 47.619 0.00 0.00 0.00 3.67
176 177 2.015456 ACAGATCCACCAGAGACACA 57.985 50.000 0.00 0.00 0.00 3.72
177 178 1.620819 ACAGATCCACCAGAGACACAC 59.379 52.381 0.00 0.00 0.00 3.82
178 179 1.066573 CAGATCCACCAGAGACACACC 60.067 57.143 0.00 0.00 0.00 4.16
179 180 1.203237 AGATCCACCAGAGACACACCT 60.203 52.381 0.00 0.00 0.00 4.00
180 181 1.205893 GATCCACCAGAGACACACCTC 59.794 57.143 0.00 0.00 0.00 3.85
181 182 0.832135 TCCACCAGAGACACACCTCC 60.832 60.000 0.00 0.00 33.76 4.30
182 183 1.121407 CCACCAGAGACACACCTCCA 61.121 60.000 0.00 0.00 33.76 3.86
183 184 0.034059 CACCAGAGACACACCTCCAC 59.966 60.000 0.00 0.00 33.76 4.02
184 185 0.398522 ACCAGAGACACACCTCCACA 60.399 55.000 0.00 0.00 33.76 4.17
185 186 0.034059 CCAGAGACACACCTCCACAC 59.966 60.000 0.00 0.00 33.76 3.82
186 187 0.319040 CAGAGACACACCTCCACACG 60.319 60.000 0.00 0.00 33.76 4.49
187 188 0.755698 AGAGACACACCTCCACACGT 60.756 55.000 0.00 0.00 33.76 4.49
188 189 0.318784 GAGACACACCTCCACACGTC 60.319 60.000 0.00 0.00 0.00 4.34
189 190 1.300697 GACACACCTCCACACGTCC 60.301 63.158 0.00 0.00 0.00 4.79
190 191 2.023414 GACACACCTCCACACGTCCA 62.023 60.000 0.00 0.00 0.00 4.02
191 192 1.594293 CACACCTCCACACGTCCAC 60.594 63.158 0.00 0.00 0.00 4.02
192 193 2.030562 CACCTCCACACGTCCACC 59.969 66.667 0.00 0.00 0.00 4.61
193 194 2.445085 ACCTCCACACGTCCACCA 60.445 61.111 0.00 0.00 0.00 4.17
194 195 2.067605 ACCTCCACACGTCCACCAA 61.068 57.895 0.00 0.00 0.00 3.67
195 196 1.374947 CCTCCACACGTCCACCAAT 59.625 57.895 0.00 0.00 0.00 3.16
196 197 0.955428 CCTCCACACGTCCACCAATG 60.955 60.000 0.00 0.00 0.00 2.82
197 198 0.034756 CTCCACACGTCCACCAATGA 59.965 55.000 0.00 0.00 0.00 2.57
198 199 0.690192 TCCACACGTCCACCAATGAT 59.310 50.000 0.00 0.00 0.00 2.45
199 200 0.804364 CCACACGTCCACCAATGATG 59.196 55.000 0.00 0.00 0.00 3.07
200 201 0.168788 CACACGTCCACCAATGATGC 59.831 55.000 0.00 0.00 0.00 3.91
201 202 0.036732 ACACGTCCACCAATGATGCT 59.963 50.000 0.00 0.00 0.00 3.79
202 203 1.277842 ACACGTCCACCAATGATGCTA 59.722 47.619 0.00 0.00 0.00 3.49
203 204 1.935873 CACGTCCACCAATGATGCTAG 59.064 52.381 0.00 0.00 0.00 3.42
204 205 1.831106 ACGTCCACCAATGATGCTAGA 59.169 47.619 0.00 0.00 0.00 2.43
205 206 2.205074 CGTCCACCAATGATGCTAGAC 58.795 52.381 0.00 0.00 0.00 2.59
206 207 2.205074 GTCCACCAATGATGCTAGACG 58.795 52.381 0.00 0.00 0.00 4.18
207 208 1.138859 TCCACCAATGATGCTAGACGG 59.861 52.381 0.00 0.00 0.00 4.79
208 209 1.586422 CACCAATGATGCTAGACGGG 58.414 55.000 0.00 0.00 0.00 5.28
209 210 0.469917 ACCAATGATGCTAGACGGGG 59.530 55.000 0.00 0.00 0.00 5.73
210 211 0.886490 CCAATGATGCTAGACGGGGC 60.886 60.000 0.00 0.00 0.00 5.80
211 212 0.107456 CAATGATGCTAGACGGGGCT 59.893 55.000 0.00 0.00 0.00 5.19
212 213 1.344438 CAATGATGCTAGACGGGGCTA 59.656 52.381 0.00 0.00 0.00 3.93
213 214 1.261480 ATGATGCTAGACGGGGCTAG 58.739 55.000 4.13 4.13 40.62 3.42
214 215 0.827925 TGATGCTAGACGGGGCTAGG 60.828 60.000 10.46 0.00 38.60 3.02
215 216 2.161078 GATGCTAGACGGGGCTAGGC 62.161 65.000 8.00 8.00 38.60 3.93
216 217 3.979739 GCTAGACGGGGCTAGGCG 61.980 72.222 10.58 0.00 38.60 5.52
217 218 3.296054 CTAGACGGGGCTAGGCGG 61.296 72.222 10.58 7.31 35.35 6.13
218 219 4.908487 TAGACGGGGCTAGGCGGG 62.908 72.222 10.58 6.93 0.00 6.13
247 248 6.049149 CCTTTATTCCATCTTCTAGCAACGA 58.951 40.000 0.00 0.00 0.00 3.85
252 253 4.322080 CCATCTTCTAGCAACGATGGTA 57.678 45.455 15.46 4.48 44.91 3.25
268 269 4.261867 CGATGGTAGATAAATCCACGGTCA 60.262 45.833 0.00 0.00 33.91 4.02
291 292 3.445008 AGATGTCTCTTGCAGGGTAGAA 58.555 45.455 0.00 0.00 0.00 2.10
297 298 2.484264 CTCTTGCAGGGTAGAAAAACCG 59.516 50.000 0.00 0.00 40.73 4.44
298 299 2.158726 TCTTGCAGGGTAGAAAAACCGT 60.159 45.455 0.00 0.00 40.73 4.83
330 331 7.910304 AGTAGCATTGACGATTGAAAGATAAC 58.090 34.615 0.00 0.00 0.00 1.89
335 336 6.869315 TTGACGATTGAAAGATAACACCAA 57.131 33.333 0.00 0.00 0.00 3.67
336 337 6.869315 TGACGATTGAAAGATAACACCAAA 57.131 33.333 0.00 0.00 0.00 3.28
337 338 6.664515 TGACGATTGAAAGATAACACCAAAC 58.335 36.000 0.00 0.00 0.00 2.93
386 393 2.100631 CAATCGTGTCCCGCACTCC 61.101 63.158 0.00 0.00 45.57 3.85
473 480 4.070552 GCAGTTCGGCCGTCTCCT 62.071 66.667 27.15 13.56 0.00 3.69
474 481 2.125912 CAGTTCGGCCGTCTCCTG 60.126 66.667 27.15 20.82 0.00 3.86
475 482 2.600769 AGTTCGGCCGTCTCCTGT 60.601 61.111 27.15 0.77 0.00 4.00
476 483 2.207924 AGTTCGGCCGTCTCCTGTT 61.208 57.895 27.15 0.34 0.00 3.16
481 488 3.050275 GCCGTCTCCTGTTGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
483 504 1.071471 CCGTCTCCTGTTGCCACTT 59.929 57.895 0.00 0.00 0.00 3.16
489 510 2.126596 CCTGTTGCCACTTGCCACA 61.127 57.895 0.00 0.00 42.81 4.17
496 517 2.633657 CACTTGCCACAGTCGTGC 59.366 61.111 0.00 0.00 42.17 5.34
505 526 1.005630 ACAGTCGTGCTCTTCCTGC 60.006 57.895 0.00 0.00 0.00 4.85
507 528 0.601046 CAGTCGTGCTCTTCCTGCAA 60.601 55.000 0.00 0.00 42.41 4.08
508 529 0.322975 AGTCGTGCTCTTCCTGCAAT 59.677 50.000 0.00 0.00 42.41 3.56
509 530 0.723981 GTCGTGCTCTTCCTGCAATC 59.276 55.000 0.00 0.00 42.41 2.67
512 533 1.405256 CGTGCTCTTCCTGCAATCTCT 60.405 52.381 0.00 0.00 42.41 3.10
514 535 1.065636 TGCTCTTCCTGCAATCTCTGG 60.066 52.381 0.00 0.00 37.51 3.86
515 536 1.209019 GCTCTTCCTGCAATCTCTGGA 59.791 52.381 0.00 0.00 33.10 3.86
516 537 2.355513 GCTCTTCCTGCAATCTCTGGAA 60.356 50.000 3.15 3.15 40.34 3.53
520 541 4.371624 TTCCTGCAATCTCTGGAAGAAA 57.628 40.909 0.00 0.00 46.34 2.52
521 542 4.581309 TCCTGCAATCTCTGGAAGAAAT 57.419 40.909 0.00 0.00 46.34 2.17
522 543 4.521146 TCCTGCAATCTCTGGAAGAAATC 58.479 43.478 0.00 0.00 46.34 2.17
523 544 4.226846 TCCTGCAATCTCTGGAAGAAATCT 59.773 41.667 0.00 0.00 46.34 2.40
524 545 4.948621 CCTGCAATCTCTGGAAGAAATCTT 59.051 41.667 0.00 0.00 46.34 2.40
525 546 5.066246 CCTGCAATCTCTGGAAGAAATCTTC 59.934 44.000 13.56 13.56 46.34 2.87
546 567 1.544691 AGTGGCAGTACTACGTTCCAG 59.455 52.381 0.00 0.00 34.33 3.86
579 600 0.389426 GCAACAGCCCATTTCAGCAG 60.389 55.000 0.00 0.00 0.00 4.24
582 603 1.248785 ACAGCCCATTTCAGCAGCAG 61.249 55.000 0.00 0.00 0.00 4.24
583 604 2.183555 GCCCATTTCAGCAGCAGC 59.816 61.111 0.00 0.00 42.56 5.25
595 616 4.341783 AGCAGCTCCGCTTGCCTT 62.342 61.111 0.00 0.00 39.99 4.35
596 617 3.368571 GCAGCTCCGCTTGCCTTT 61.369 61.111 0.00 0.00 36.40 3.11
597 618 2.873288 CAGCTCCGCTTGCCTTTC 59.127 61.111 0.00 0.00 36.40 2.62
598 619 2.360475 AGCTCCGCTTGCCTTTCC 60.360 61.111 0.00 0.00 33.89 3.13
599 620 3.443925 GCTCCGCTTGCCTTTCCC 61.444 66.667 0.00 0.00 0.00 3.97
600 621 3.127533 CTCCGCTTGCCTTTCCCG 61.128 66.667 0.00 0.00 0.00 5.14
601 622 4.715523 TCCGCTTGCCTTTCCCGG 62.716 66.667 0.00 0.00 40.25 5.73
609 630 3.354678 CCTTTCCCGGCACAACAG 58.645 61.111 0.00 0.00 0.00 3.16
610 631 2.268076 CCTTTCCCGGCACAACAGG 61.268 63.158 0.00 0.00 0.00 4.00
611 632 1.228124 CTTTCCCGGCACAACAGGA 60.228 57.895 0.00 0.00 35.22 3.86
612 633 1.515521 CTTTCCCGGCACAACAGGAC 61.516 60.000 0.00 0.00 35.22 3.85
613 634 2.272230 TTTCCCGGCACAACAGGACA 62.272 55.000 0.00 0.00 35.22 4.02
614 635 2.951475 TTCCCGGCACAACAGGACAC 62.951 60.000 0.00 0.00 35.22 3.67
615 636 3.345808 CCGGCACAACAGGACACG 61.346 66.667 0.00 0.00 35.22 4.49
616 637 4.012895 CGGCACAACAGGACACGC 62.013 66.667 0.00 0.00 0.00 5.34
617 638 2.899838 GGCACAACAGGACACGCA 60.900 61.111 0.00 0.00 0.00 5.24
618 639 2.327940 GCACAACAGGACACGCAC 59.672 61.111 0.00 0.00 0.00 5.34
619 640 2.180204 GCACAACAGGACACGCACT 61.180 57.895 0.00 0.00 0.00 4.40
620 641 1.643292 CACAACAGGACACGCACTG 59.357 57.895 0.00 0.00 40.48 3.66
645 666 4.729918 CCAGGCCCCTGCTCACAC 62.730 72.222 8.84 0.00 42.35 3.82
651 672 4.320456 CCCTGCTCACACGCTGGT 62.320 66.667 7.72 0.00 44.65 4.00
652 673 2.740055 CCTGCTCACACGCTGGTC 60.740 66.667 0.00 0.00 42.17 4.02
653 674 2.029518 CTGCTCACACGCTGGTCA 59.970 61.111 0.00 0.00 0.00 4.02
654 675 2.025969 CTGCTCACACGCTGGTCAG 61.026 63.158 0.00 0.00 0.00 3.51
655 676 2.029666 GCTCACACGCTGGTCAGT 59.970 61.111 0.00 0.00 0.00 3.41
656 677 2.313172 GCTCACACGCTGGTCAGTG 61.313 63.158 9.68 9.68 44.11 3.66
657 678 2.280119 TCACACGCTGGTCAGTGC 60.280 61.111 11.00 0.00 42.40 4.40
658 679 2.280389 CACACGCTGGTCAGTGCT 60.280 61.111 11.00 0.00 42.40 4.40
659 680 2.029666 ACACGCTGGTCAGTGCTC 59.970 61.111 11.00 0.00 42.40 4.26
660 681 2.341543 CACGCTGGTCAGTGCTCT 59.658 61.111 11.00 0.00 42.40 4.09
661 682 1.735920 CACGCTGGTCAGTGCTCTC 60.736 63.158 11.00 0.00 42.40 3.20
662 683 2.203082 ACGCTGGTCAGTGCTCTCA 61.203 57.895 11.00 0.00 42.40 3.27
663 684 1.005748 CGCTGGTCAGTGCTCTCAA 60.006 57.895 0.00 0.00 31.68 3.02
664 685 1.013005 CGCTGGTCAGTGCTCTCAAG 61.013 60.000 0.00 0.00 31.68 3.02
744 765 1.804151 CGAACAAGCCTTCAATTCGGA 59.196 47.619 6.99 0.00 38.73 4.55
781 802 2.065906 GATCCGTCTCTCTGACCGGC 62.066 65.000 0.00 0.00 42.49 6.13
807 833 1.273886 GTGACCTCTGTGTCCTCTTCC 59.726 57.143 0.00 0.00 34.25 3.46
824 850 2.123982 CTCCTGCAATCCCTGGCC 60.124 66.667 0.00 0.00 0.00 5.36
825 851 2.614969 TCCTGCAATCCCTGGCCT 60.615 61.111 3.32 0.00 0.00 5.19
826 852 2.123982 CCTGCAATCCCTGGCCTC 60.124 66.667 3.32 0.00 0.00 4.70
827 853 2.515523 CTGCAATCCCTGGCCTCG 60.516 66.667 3.32 0.00 0.00 4.63
828 854 4.802051 TGCAATCCCTGGCCTCGC 62.802 66.667 3.32 0.00 0.00 5.03
829 855 4.802051 GCAATCCCTGGCCTCGCA 62.802 66.667 3.32 0.00 0.00 5.10
830 856 2.515523 CAATCCCTGGCCTCGCAG 60.516 66.667 3.32 0.00 0.00 5.18
930 963 2.593468 GAATCAGCTGGCCGGTAGCA 62.593 60.000 27.08 13.32 46.50 3.49
971 1004 0.035725 TCGTCCCTCTGTCGCTCTTA 60.036 55.000 0.00 0.00 0.00 2.10
1004 1037 5.142061 TGTAGCTTTTCTGTGGTTCGATA 57.858 39.130 0.00 0.00 0.00 2.92
1007 1040 6.978659 TGTAGCTTTTCTGTGGTTCGATATAG 59.021 38.462 0.00 0.00 0.00 1.31
1008 1041 5.360591 AGCTTTTCTGTGGTTCGATATAGG 58.639 41.667 0.00 0.00 0.00 2.57
1009 1042 5.128827 AGCTTTTCTGTGGTTCGATATAGGA 59.871 40.000 0.00 0.00 0.00 2.94
1010 1043 5.463724 GCTTTTCTGTGGTTCGATATAGGAG 59.536 44.000 0.00 0.00 0.00 3.69
1011 1044 6.540438 TTTTCTGTGGTTCGATATAGGAGT 57.460 37.500 0.00 0.00 0.00 3.85
1012 1045 7.649533 TTTTCTGTGGTTCGATATAGGAGTA 57.350 36.000 0.00 0.00 0.00 2.59
1013 1046 6.630444 TTCTGTGGTTCGATATAGGAGTAC 57.370 41.667 0.00 0.00 0.00 2.73
1014 1047 5.938279 TCTGTGGTTCGATATAGGAGTACT 58.062 41.667 0.00 0.00 0.00 2.73
1015 1048 6.363065 TCTGTGGTTCGATATAGGAGTACTT 58.637 40.000 0.00 0.00 0.00 2.24
1016 1049 6.485984 TCTGTGGTTCGATATAGGAGTACTTC 59.514 42.308 0.00 0.00 0.00 3.01
1212 1246 1.269998 GACAACTACCTCGTCAGCTGT 59.730 52.381 14.67 0.00 0.00 4.40
1215 1249 1.251527 ACTACCTCGTCAGCTGTGGG 61.252 60.000 14.67 13.41 0.00 4.61
2157 2212 1.374758 CACCGTGAAGCAGGACCTC 60.375 63.158 0.00 0.00 0.00 3.85
2204 2259 0.457337 CTGGCGTTCCCGTACTACAC 60.457 60.000 0.00 0.00 35.87 2.90
2229 2284 2.447887 CGTGTTGCCTGCTAGCGAG 61.448 63.158 10.77 8.58 34.65 5.03
2280 2335 3.134458 CCCTCTGGCAAATAAGATCGTC 58.866 50.000 0.00 0.00 0.00 4.20
2353 2408 4.451652 GGTCCGTCGTCGTCGTCC 62.452 72.222 10.76 8.83 38.33 4.79
2431 2486 1.488957 GCGCTCGCTTTCATATCCG 59.511 57.895 0.00 0.00 38.26 4.18
2467 2522 3.282885 GCCATTGTCCTTAGGAAGAAGG 58.717 50.000 0.98 4.65 46.48 3.46
2483 2541 2.385417 AGAAGGAGAAGGAGAAGGAGGT 59.615 50.000 0.00 0.00 0.00 3.85
2495 2556 3.403558 GGAGGTGGAGGAGGGTGC 61.404 72.222 0.00 0.00 0.00 5.01
2496 2557 3.403558 GAGGTGGAGGAGGGTGCC 61.404 72.222 0.00 0.00 0.00 5.01
2604 2665 1.066858 TCAGGATCGTCAAGCTTCACC 60.067 52.381 0.00 0.00 0.00 4.02
2613 2674 3.850098 AAGCTTCACCACTGCCGGG 62.850 63.158 2.18 0.00 0.00 5.73
2685 2752 3.352338 CTACCGTTTCCCGCTCGCT 62.352 63.158 0.00 0.00 34.38 4.93
3108 3178 2.767505 GTCAAGTCGTCCAACATCCTT 58.232 47.619 0.00 0.00 0.00 3.36
3637 3750 0.458543 TCAGAGAAGCGCGGTTGATC 60.459 55.000 30.19 23.88 0.00 2.92
3638 3751 0.737367 CAGAGAAGCGCGGTTGATCA 60.737 55.000 30.19 0.00 0.00 2.92
3645 3758 3.186047 GCGGTTGATCACGACGGG 61.186 66.667 9.68 0.00 33.25 5.28
3653 3766 1.379443 ATCACGACGGGCTGGACTA 60.379 57.895 0.00 0.00 0.00 2.59
3665 3778 1.162698 CTGGACTACTCCGACGTGAA 58.837 55.000 0.00 0.00 39.88 3.18
3814 3930 1.915141 CAGATGAACCCATATGGCCC 58.085 55.000 16.97 7.67 38.11 5.80
3820 3936 5.738108 AGATGAACCCATATGGCCCTATATT 59.262 40.000 16.97 1.40 37.83 1.28
3894 4011 2.489938 TGTTTCCCCTCCATCTTTCG 57.510 50.000 0.00 0.00 0.00 3.46
4111 4246 6.575162 ACATGTTTGGAGAGTTTCATAACC 57.425 37.500 0.00 0.00 34.71 2.85
4156 4291 1.841302 GACCCTCACCAGGTGATGCA 61.841 60.000 23.21 0.13 41.94 3.96
4157 4292 1.077930 CCCTCACCAGGTGATGCAG 60.078 63.158 23.21 10.97 41.94 4.41
4172 4307 0.257328 TGCAGTTCCACTGGGTGAAA 59.743 50.000 6.05 0.00 46.01 2.69
4173 4308 0.954452 GCAGTTCCACTGGGTGAAAG 59.046 55.000 6.05 0.00 46.01 2.62
4176 4311 1.215423 AGTTCCACTGGGTGAAAGCTT 59.785 47.619 0.00 0.00 35.23 3.74
4283 4419 0.811616 GGCTCAGGCTACGACCATTG 60.812 60.000 0.00 0.00 38.73 2.82
4301 4437 1.980772 GGCAGCTGGGCTCATGTTT 60.981 57.895 17.12 0.00 36.40 2.83
4337 4473 0.991146 TCATTGGGCTCCTGCTGTTA 59.009 50.000 0.00 0.00 39.59 2.41
4406 4542 2.115910 CCCTTGGCAGGTGAAGCA 59.884 61.111 0.00 0.00 38.79 3.91
4424 4560 2.123683 CTCCTCCTAGGGCTGCGA 60.124 66.667 9.46 0.00 35.59 5.10
4489 4655 0.613260 TTCATAGGGCTGCGACTGTT 59.387 50.000 5.84 0.00 0.00 3.16
4490 4656 0.108186 TCATAGGGCTGCGACTGTTG 60.108 55.000 5.84 0.00 0.00 3.33
4550 4716 3.114616 CTTGGGCTGCGACTGTCG 61.115 66.667 24.78 24.78 43.89 4.35
4694 4860 7.316640 ACACAACACAAGTATGTTTAAAAGCA 58.683 30.769 0.00 0.00 40.89 3.91
4695 4861 7.815068 ACACAACACAAGTATGTTTAAAAGCAA 59.185 29.630 0.00 0.00 40.89 3.91
4696 4862 8.816144 CACAACACAAGTATGTTTAAAAGCAAT 58.184 29.630 0.00 0.00 40.89 3.56
4810 5187 9.461312 TTCAGCAGGTTAGTAAAATGTATGAAT 57.539 29.630 10.77 0.00 0.00 2.57
4939 5316 5.444663 AAGAGGCTTTAGTTTGCAAGAAG 57.555 39.130 0.00 4.61 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.002316 ACGACTTCCTGACTGTCTACTAC 58.998 47.826 9.51 0.00 0.00 2.73
1 2 4.252073 GACGACTTCCTGACTGTCTACTA 58.748 47.826 9.51 0.00 0.00 1.82
2 3 3.075884 GACGACTTCCTGACTGTCTACT 58.924 50.000 9.51 0.00 0.00 2.57
3 4 2.159680 CGACGACTTCCTGACTGTCTAC 60.160 54.545 9.51 0.00 0.00 2.59
4 5 2.074576 CGACGACTTCCTGACTGTCTA 58.925 52.381 9.51 0.00 0.00 2.59
5 6 0.875728 CGACGACTTCCTGACTGTCT 59.124 55.000 9.51 0.00 0.00 3.41
6 7 0.592148 ACGACGACTTCCTGACTGTC 59.408 55.000 0.00 0.00 0.00 3.51
7 8 0.311165 CACGACGACTTCCTGACTGT 59.689 55.000 0.00 0.00 0.00 3.55
8 9 1.004277 GCACGACGACTTCCTGACTG 61.004 60.000 0.00 0.00 0.00 3.51
9 10 1.173444 AGCACGACGACTTCCTGACT 61.173 55.000 0.00 0.00 0.00 3.41
10 11 0.520404 TAGCACGACGACTTCCTGAC 59.480 55.000 0.00 0.00 0.00 3.51
11 12 1.199327 CTTAGCACGACGACTTCCTGA 59.801 52.381 0.00 0.00 0.00 3.86
12 13 1.618861 CTTAGCACGACGACTTCCTG 58.381 55.000 0.00 0.00 0.00 3.86
13 14 0.526662 CCTTAGCACGACGACTTCCT 59.473 55.000 0.00 0.00 0.00 3.36
14 15 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
15 16 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
16 17 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
17 18 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
18 19 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
19 20 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
20 21 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
21 22 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
22 23 0.397957 TCTATGGGGCCTTAGCACGA 60.398 55.000 0.84 0.00 46.55 4.35
23 24 0.468226 TTCTATGGGGCCTTAGCACG 59.532 55.000 0.84 0.00 46.55 5.34
24 25 1.477014 GGTTCTATGGGGCCTTAGCAC 60.477 57.143 0.84 5.93 43.97 4.40
25 26 0.843984 GGTTCTATGGGGCCTTAGCA 59.156 55.000 0.84 0.00 42.56 3.49
26 27 0.843984 TGGTTCTATGGGGCCTTAGC 59.156 55.000 0.84 0.00 38.76 3.09
27 28 2.745152 CGTTGGTTCTATGGGGCCTTAG 60.745 54.545 0.84 5.59 0.00 2.18
28 29 1.210967 CGTTGGTTCTATGGGGCCTTA 59.789 52.381 0.84 0.00 0.00 2.69
29 30 0.034477 CGTTGGTTCTATGGGGCCTT 60.034 55.000 0.84 0.00 0.00 4.35
30 31 1.607612 CGTTGGTTCTATGGGGCCT 59.392 57.895 0.84 0.00 0.00 5.19
31 32 2.119029 GCGTTGGTTCTATGGGGCC 61.119 63.158 0.00 0.00 0.00 5.80
32 33 1.377987 TGCGTTGGTTCTATGGGGC 60.378 57.895 0.00 0.00 0.00 5.80
33 34 1.029947 GGTGCGTTGGTTCTATGGGG 61.030 60.000 0.00 0.00 0.00 4.96
34 35 0.322098 TGGTGCGTTGGTTCTATGGG 60.322 55.000 0.00 0.00 0.00 4.00
35 36 1.086696 CTGGTGCGTTGGTTCTATGG 58.913 55.000 0.00 0.00 0.00 2.74
36 37 2.093306 TCTGGTGCGTTGGTTCTATG 57.907 50.000 0.00 0.00 0.00 2.23
37 38 2.224426 TGTTCTGGTGCGTTGGTTCTAT 60.224 45.455 0.00 0.00 0.00 1.98
38 39 1.139256 TGTTCTGGTGCGTTGGTTCTA 59.861 47.619 0.00 0.00 0.00 2.10
39 40 0.107410 TGTTCTGGTGCGTTGGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
40 41 0.307760 CTGTTCTGGTGCGTTGGTTC 59.692 55.000 0.00 0.00 0.00 3.62
41 42 1.724582 GCTGTTCTGGTGCGTTGGTT 61.725 55.000 0.00 0.00 0.00 3.67
42 43 2.186826 GCTGTTCTGGTGCGTTGGT 61.187 57.895 0.00 0.00 0.00 3.67
43 44 1.723608 TTGCTGTTCTGGTGCGTTGG 61.724 55.000 0.00 0.00 0.00 3.77
44 45 0.592247 GTTGCTGTTCTGGTGCGTTG 60.592 55.000 0.00 0.00 0.00 4.10
45 46 0.748005 AGTTGCTGTTCTGGTGCGTT 60.748 50.000 0.00 0.00 0.00 4.84
46 47 1.153168 AGTTGCTGTTCTGGTGCGT 60.153 52.632 0.00 0.00 0.00 5.24
47 48 1.280746 CAGTTGCTGTTCTGGTGCG 59.719 57.895 0.00 0.00 0.00 5.34
48 49 1.008079 GCAGTTGCTGTTCTGGTGC 60.008 57.895 0.00 0.00 38.21 5.01
49 50 1.656441 GGCAGTTGCTGTTCTGGTG 59.344 57.895 3.88 0.00 41.70 4.17
50 51 1.893808 CGGCAGTTGCTGTTCTGGT 60.894 57.895 4.77 0.00 42.29 4.00
51 52 2.949106 CGGCAGTTGCTGTTCTGG 59.051 61.111 4.77 0.00 42.29 3.86
58 59 1.302752 TTCATCTGCGGCAGTTGCT 60.303 52.632 27.97 12.09 41.70 3.91
59 60 1.136147 CTTCATCTGCGGCAGTTGC 59.864 57.895 27.97 0.00 41.14 4.17
60 61 0.725686 CTCTTCATCTGCGGCAGTTG 59.274 55.000 27.24 27.24 33.84 3.16
61 62 0.322975 ACTCTTCATCTGCGGCAGTT 59.677 50.000 27.63 18.12 32.61 3.16
62 63 0.390866 CACTCTTCATCTGCGGCAGT 60.391 55.000 27.63 13.66 32.61 4.40
63 64 0.390866 ACACTCTTCATCTGCGGCAG 60.391 55.000 23.72 23.72 0.00 4.85
64 65 0.894835 TACACTCTTCATCTGCGGCA 59.105 50.000 1.29 1.29 0.00 5.69
65 66 1.135139 TCTACACTCTTCATCTGCGGC 59.865 52.381 0.00 0.00 0.00 6.53
66 67 3.067320 TGATCTACACTCTTCATCTGCGG 59.933 47.826 0.00 0.00 0.00 5.69
67 68 4.298744 TGATCTACACTCTTCATCTGCG 57.701 45.455 0.00 0.00 0.00 5.18
68 69 6.036953 CCTTTTGATCTACACTCTTCATCTGC 59.963 42.308 0.00 0.00 0.00 4.26
69 70 7.326454 TCCTTTTGATCTACACTCTTCATCTG 58.674 38.462 0.00 0.00 0.00 2.90
70 71 7.487822 TCCTTTTGATCTACACTCTTCATCT 57.512 36.000 0.00 0.00 0.00 2.90
71 72 8.364129 GATCCTTTTGATCTACACTCTTCATC 57.636 38.462 0.00 0.00 45.46 2.92
85 86 5.648092 CGTCTTTAGGTTGGATCCTTTTGAT 59.352 40.000 14.23 0.00 38.86 2.57
86 87 5.001232 CGTCTTTAGGTTGGATCCTTTTGA 58.999 41.667 14.23 0.00 38.86 2.69
87 88 4.379499 GCGTCTTTAGGTTGGATCCTTTTG 60.379 45.833 14.23 0.00 38.86 2.44
88 89 3.756963 GCGTCTTTAGGTTGGATCCTTTT 59.243 43.478 14.23 0.00 38.86 2.27
89 90 3.244770 TGCGTCTTTAGGTTGGATCCTTT 60.245 43.478 14.23 0.00 38.86 3.11
90 91 2.304761 TGCGTCTTTAGGTTGGATCCTT 59.695 45.455 14.23 0.00 38.86 3.36
91 92 1.906574 TGCGTCTTTAGGTTGGATCCT 59.093 47.619 14.23 0.00 41.20 3.24
92 93 2.396590 TGCGTCTTTAGGTTGGATCC 57.603 50.000 4.20 4.20 0.00 3.36
93 94 3.531538 TCATGCGTCTTTAGGTTGGATC 58.468 45.455 0.00 0.00 0.00 3.36
94 95 3.627395 TCATGCGTCTTTAGGTTGGAT 57.373 42.857 0.00 0.00 0.00 3.41
95 96 3.071479 GTTCATGCGTCTTTAGGTTGGA 58.929 45.455 0.00 0.00 0.00 3.53
96 97 2.159707 CGTTCATGCGTCTTTAGGTTGG 60.160 50.000 0.00 0.00 0.00 3.77
97 98 2.734606 TCGTTCATGCGTCTTTAGGTTG 59.265 45.455 0.00 0.00 0.00 3.77
98 99 3.034721 TCGTTCATGCGTCTTTAGGTT 57.965 42.857 0.00 0.00 0.00 3.50
99 100 2.736144 TCGTTCATGCGTCTTTAGGT 57.264 45.000 0.00 0.00 0.00 3.08
100 101 3.060895 GTCTTCGTTCATGCGTCTTTAGG 59.939 47.826 0.00 0.00 0.00 2.69
101 102 3.241364 CGTCTTCGTTCATGCGTCTTTAG 60.241 47.826 0.00 0.00 0.00 1.85
102 103 2.659757 CGTCTTCGTTCATGCGTCTTTA 59.340 45.455 0.00 0.00 0.00 1.85
103 104 1.455786 CGTCTTCGTTCATGCGTCTTT 59.544 47.619 0.00 0.00 0.00 2.52
104 105 1.060713 CGTCTTCGTTCATGCGTCTT 58.939 50.000 0.00 0.00 0.00 3.01
105 106 0.240145 TCGTCTTCGTTCATGCGTCT 59.760 50.000 0.00 0.00 38.33 4.18
106 107 1.057636 TTCGTCTTCGTTCATGCGTC 58.942 50.000 0.00 0.00 38.33 5.19
107 108 0.782384 GTTCGTCTTCGTTCATGCGT 59.218 50.000 0.00 0.00 38.33 5.24
108 109 0.246374 CGTTCGTCTTCGTTCATGCG 60.246 55.000 0.00 0.00 38.33 4.73
109 110 1.057636 TCGTTCGTCTTCGTTCATGC 58.942 50.000 0.00 0.00 38.33 4.06
110 111 1.055891 CGTCGTTCGTCTTCGTTCATG 59.944 52.381 0.00 0.00 38.33 3.07
111 112 1.069703 TCGTCGTTCGTCTTCGTTCAT 60.070 47.619 0.00 0.00 40.80 2.57
112 113 0.304401 TCGTCGTTCGTCTTCGTTCA 59.696 50.000 0.00 0.00 40.80 3.18
113 114 1.119672 GTTCGTCGTTCGTCTTCGTTC 59.880 52.381 0.00 0.00 40.80 3.95
114 115 1.115639 GTTCGTCGTTCGTCTTCGTT 58.884 50.000 0.00 0.00 40.80 3.85
115 116 0.027979 TGTTCGTCGTTCGTCTTCGT 59.972 50.000 0.00 0.00 40.80 3.85
116 117 0.695943 CTGTTCGTCGTTCGTCTTCG 59.304 55.000 0.00 0.00 40.80 3.79
117 118 2.028287 TCTGTTCGTCGTTCGTCTTC 57.972 50.000 0.00 0.00 40.80 2.87
118 119 2.582687 GATCTGTTCGTCGTTCGTCTT 58.417 47.619 0.00 0.00 40.80 3.01
119 120 1.135746 GGATCTGTTCGTCGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
120 121 1.257539 GGATCTGTTCGTCGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
121 122 0.594602 TGGATCTGTTCGTCGTTCGT 59.405 50.000 0.00 0.00 40.80 3.85
122 123 1.649171 CTTGGATCTGTTCGTCGTTCG 59.351 52.381 0.00 0.00 41.41 3.95
123 124 1.390463 GCTTGGATCTGTTCGTCGTTC 59.610 52.381 0.00 0.00 0.00 3.95
124 125 1.270094 TGCTTGGATCTGTTCGTCGTT 60.270 47.619 0.00 0.00 0.00 3.85
125 126 0.317160 TGCTTGGATCTGTTCGTCGT 59.683 50.000 0.00 0.00 0.00 4.34
126 127 1.428448 TTGCTTGGATCTGTTCGTCG 58.572 50.000 0.00 0.00 0.00 5.12
127 128 3.181506 GGATTTGCTTGGATCTGTTCGTC 60.182 47.826 0.00 0.00 0.00 4.20
128 129 2.749621 GGATTTGCTTGGATCTGTTCGT 59.250 45.455 0.00 0.00 0.00 3.85
129 130 2.749076 TGGATTTGCTTGGATCTGTTCG 59.251 45.455 0.00 0.00 0.00 3.95
130 131 3.119352 GGTGGATTTGCTTGGATCTGTTC 60.119 47.826 0.00 0.00 0.00 3.18
131 132 2.827921 GGTGGATTTGCTTGGATCTGTT 59.172 45.455 0.00 0.00 0.00 3.16
132 133 2.225091 TGGTGGATTTGCTTGGATCTGT 60.225 45.455 0.00 0.00 0.00 3.41
133 134 2.449464 TGGTGGATTTGCTTGGATCTG 58.551 47.619 0.00 0.00 0.00 2.90
134 135 2.905415 TGGTGGATTTGCTTGGATCT 57.095 45.000 0.00 0.00 0.00 2.75
135 136 3.959535 TTTGGTGGATTTGCTTGGATC 57.040 42.857 0.00 0.00 0.00 3.36
136 137 4.141528 TGTTTTTGGTGGATTTGCTTGGAT 60.142 37.500 0.00 0.00 0.00 3.41
137 138 3.198635 TGTTTTTGGTGGATTTGCTTGGA 59.801 39.130 0.00 0.00 0.00 3.53
138 139 3.539604 TGTTTTTGGTGGATTTGCTTGG 58.460 40.909 0.00 0.00 0.00 3.61
139 140 4.440880 TCTGTTTTTGGTGGATTTGCTTG 58.559 39.130 0.00 0.00 0.00 4.01
140 141 4.751767 TCTGTTTTTGGTGGATTTGCTT 57.248 36.364 0.00 0.00 0.00 3.91
141 142 4.262592 GGATCTGTTTTTGGTGGATTTGCT 60.263 41.667 0.00 0.00 0.00 3.91
142 143 3.996363 GGATCTGTTTTTGGTGGATTTGC 59.004 43.478 0.00 0.00 0.00 3.68
143 144 4.990426 GTGGATCTGTTTTTGGTGGATTTG 59.010 41.667 0.00 0.00 0.00 2.32
144 145 4.040339 GGTGGATCTGTTTTTGGTGGATTT 59.960 41.667 0.00 0.00 0.00 2.17
145 146 3.578282 GGTGGATCTGTTTTTGGTGGATT 59.422 43.478 0.00 0.00 0.00 3.01
146 147 3.165071 GGTGGATCTGTTTTTGGTGGAT 58.835 45.455 0.00 0.00 0.00 3.41
147 148 2.091610 TGGTGGATCTGTTTTTGGTGGA 60.092 45.455 0.00 0.00 0.00 4.02
148 149 2.297033 CTGGTGGATCTGTTTTTGGTGG 59.703 50.000 0.00 0.00 0.00 4.61
149 150 3.221771 TCTGGTGGATCTGTTTTTGGTG 58.778 45.455 0.00 0.00 0.00 4.17
150 151 3.138283 TCTCTGGTGGATCTGTTTTTGGT 59.862 43.478 0.00 0.00 0.00 3.67
151 152 3.503748 GTCTCTGGTGGATCTGTTTTTGG 59.496 47.826 0.00 0.00 0.00 3.28
152 153 4.023707 GTGTCTCTGGTGGATCTGTTTTTG 60.024 45.833 0.00 0.00 0.00 2.44
153 154 4.137543 GTGTCTCTGGTGGATCTGTTTTT 58.862 43.478 0.00 0.00 0.00 1.94
154 155 3.136443 TGTGTCTCTGGTGGATCTGTTTT 59.864 43.478 0.00 0.00 0.00 2.43
155 156 2.705658 TGTGTCTCTGGTGGATCTGTTT 59.294 45.455 0.00 0.00 0.00 2.83
156 157 2.037772 GTGTGTCTCTGGTGGATCTGTT 59.962 50.000 0.00 0.00 0.00 3.16
157 158 1.620819 GTGTGTCTCTGGTGGATCTGT 59.379 52.381 0.00 0.00 0.00 3.41
158 159 1.066573 GGTGTGTCTCTGGTGGATCTG 60.067 57.143 0.00 0.00 0.00 2.90
159 160 1.203237 AGGTGTGTCTCTGGTGGATCT 60.203 52.381 0.00 0.00 0.00 2.75
160 161 1.205893 GAGGTGTGTCTCTGGTGGATC 59.794 57.143 0.00 0.00 0.00 3.36
161 162 1.270907 GAGGTGTGTCTCTGGTGGAT 58.729 55.000 0.00 0.00 0.00 3.41
162 163 0.832135 GGAGGTGTGTCTCTGGTGGA 60.832 60.000 0.00 0.00 34.39 4.02
163 164 1.121407 TGGAGGTGTGTCTCTGGTGG 61.121 60.000 0.00 0.00 34.39 4.61
164 165 0.034059 GTGGAGGTGTGTCTCTGGTG 59.966 60.000 0.00 0.00 34.39 4.17
165 166 0.398522 TGTGGAGGTGTGTCTCTGGT 60.399 55.000 0.00 0.00 34.39 4.00
166 167 0.034059 GTGTGGAGGTGTGTCTCTGG 59.966 60.000 0.00 0.00 34.39 3.86
167 168 0.319040 CGTGTGGAGGTGTGTCTCTG 60.319 60.000 0.00 0.00 34.39 3.35
168 169 0.755698 ACGTGTGGAGGTGTGTCTCT 60.756 55.000 0.00 0.00 34.39 3.10
169 170 0.318784 GACGTGTGGAGGTGTGTCTC 60.319 60.000 0.00 0.00 0.00 3.36
170 171 1.740285 GACGTGTGGAGGTGTGTCT 59.260 57.895 0.00 0.00 0.00 3.41
171 172 1.300697 GGACGTGTGGAGGTGTGTC 60.301 63.158 0.00 0.00 0.00 3.67
172 173 2.061578 TGGACGTGTGGAGGTGTGT 61.062 57.895 0.00 0.00 0.00 3.72
173 174 1.594293 GTGGACGTGTGGAGGTGTG 60.594 63.158 0.00 0.00 0.00 3.82
174 175 2.803817 GGTGGACGTGTGGAGGTGT 61.804 63.158 0.00 0.00 0.00 4.16
175 176 2.030562 GGTGGACGTGTGGAGGTG 59.969 66.667 0.00 0.00 0.00 4.00
176 177 1.415672 ATTGGTGGACGTGTGGAGGT 61.416 55.000 0.00 0.00 0.00 3.85
177 178 0.955428 CATTGGTGGACGTGTGGAGG 60.955 60.000 0.00 0.00 0.00 4.30
178 179 0.034756 TCATTGGTGGACGTGTGGAG 59.965 55.000 0.00 0.00 0.00 3.86
179 180 0.690192 ATCATTGGTGGACGTGTGGA 59.310 50.000 0.00 0.00 0.00 4.02
180 181 0.804364 CATCATTGGTGGACGTGTGG 59.196 55.000 0.00 0.00 0.00 4.17
181 182 0.168788 GCATCATTGGTGGACGTGTG 59.831 55.000 0.00 0.00 0.00 3.82
182 183 0.036732 AGCATCATTGGTGGACGTGT 59.963 50.000 0.00 0.00 30.87 4.49
183 184 1.935873 CTAGCATCATTGGTGGACGTG 59.064 52.381 0.00 0.00 34.06 4.49
184 185 1.831106 TCTAGCATCATTGGTGGACGT 59.169 47.619 0.00 0.00 36.13 4.34
185 186 2.205074 GTCTAGCATCATTGGTGGACG 58.795 52.381 6.03 0.00 46.93 4.79
187 188 1.138859 CCGTCTAGCATCATTGGTGGA 59.861 52.381 0.00 0.00 38.35 4.02
188 189 1.586422 CCGTCTAGCATCATTGGTGG 58.414 55.000 0.00 0.00 34.79 4.61
189 190 1.586422 CCCGTCTAGCATCATTGGTG 58.414 55.000 0.00 0.00 34.79 4.17
190 191 0.469917 CCCCGTCTAGCATCATTGGT 59.530 55.000 0.00 0.00 37.36 3.67
191 192 0.886490 GCCCCGTCTAGCATCATTGG 60.886 60.000 0.00 0.00 0.00 3.16
192 193 0.107456 AGCCCCGTCTAGCATCATTG 59.893 55.000 0.00 0.00 0.00 2.82
193 194 1.620819 CTAGCCCCGTCTAGCATCATT 59.379 52.381 0.00 0.00 30.81 2.57
194 195 1.261480 CTAGCCCCGTCTAGCATCAT 58.739 55.000 0.00 0.00 30.81 2.45
195 196 0.827925 CCTAGCCCCGTCTAGCATCA 60.828 60.000 0.00 0.00 35.78 3.07
196 197 1.968310 CCTAGCCCCGTCTAGCATC 59.032 63.158 0.00 0.00 35.78 3.91
197 198 2.210711 GCCTAGCCCCGTCTAGCAT 61.211 63.158 0.00 0.00 35.78 3.79
198 199 2.838225 GCCTAGCCCCGTCTAGCA 60.838 66.667 0.00 0.00 35.78 3.49
199 200 3.979739 CGCCTAGCCCCGTCTAGC 61.980 72.222 0.00 0.00 35.78 3.42
200 201 3.296054 CCGCCTAGCCCCGTCTAG 61.296 72.222 0.00 0.00 36.63 2.43
201 202 4.908487 CCCGCCTAGCCCCGTCTA 62.908 72.222 0.00 0.00 0.00 2.59
208 209 4.862823 AGGTCTCCCCGCCTAGCC 62.863 72.222 0.00 0.00 38.74 3.93
209 210 1.047034 TAAAGGTCTCCCCGCCTAGC 61.047 60.000 0.00 0.00 38.74 3.42
210 211 1.718280 ATAAAGGTCTCCCCGCCTAG 58.282 55.000 0.00 0.00 38.74 3.02
211 212 2.044758 GAATAAAGGTCTCCCCGCCTA 58.955 52.381 0.00 0.00 38.74 3.93
212 213 0.837940 GAATAAAGGTCTCCCCGCCT 59.162 55.000 0.00 0.00 38.74 5.52
213 214 0.179026 GGAATAAAGGTCTCCCCGCC 60.179 60.000 0.00 0.00 38.74 6.13
214 215 0.544697 TGGAATAAAGGTCTCCCCGC 59.455 55.000 0.00 0.00 38.74 6.13
215 216 2.706190 AGATGGAATAAAGGTCTCCCCG 59.294 50.000 0.00 0.00 38.74 5.73
216 217 4.413851 AGAAGATGGAATAAAGGTCTCCCC 59.586 45.833 0.00 0.00 0.00 4.81
217 218 5.638530 AGAAGATGGAATAAAGGTCTCCC 57.361 43.478 0.00 0.00 0.00 4.30
218 219 6.183361 TGCTAGAAGATGGAATAAAGGTCTCC 60.183 42.308 0.00 0.00 0.00 3.71
219 220 6.821388 TGCTAGAAGATGGAATAAAGGTCTC 58.179 40.000 0.00 0.00 0.00 3.36
220 221 6.814954 TGCTAGAAGATGGAATAAAGGTCT 57.185 37.500 0.00 0.00 0.00 3.85
221 222 6.018669 CGTTGCTAGAAGATGGAATAAAGGTC 60.019 42.308 0.00 0.00 0.00 3.85
222 223 5.817816 CGTTGCTAGAAGATGGAATAAAGGT 59.182 40.000 0.00 0.00 0.00 3.50
223 224 6.049149 TCGTTGCTAGAAGATGGAATAAAGG 58.951 40.000 0.00 0.00 0.00 3.11
224 225 7.571026 CATCGTTGCTAGAAGATGGAATAAAG 58.429 38.462 0.00 0.00 37.43 1.85
225 226 7.482654 CATCGTTGCTAGAAGATGGAATAAA 57.517 36.000 0.00 0.00 37.43 1.40
232 233 5.188327 TCTACCATCGTTGCTAGAAGATG 57.812 43.478 0.00 2.28 39.92 2.90
233 234 7.526142 TTATCTACCATCGTTGCTAGAAGAT 57.474 36.000 0.00 0.00 0.00 2.40
234 235 6.954487 TTATCTACCATCGTTGCTAGAAGA 57.046 37.500 0.00 0.00 0.00 2.87
235 236 7.329717 GGATTTATCTACCATCGTTGCTAGAAG 59.670 40.741 0.00 0.00 0.00 2.85
236 237 7.152645 GGATTTATCTACCATCGTTGCTAGAA 58.847 38.462 0.00 0.00 0.00 2.10
237 238 6.266786 TGGATTTATCTACCATCGTTGCTAGA 59.733 38.462 0.00 1.91 0.00 2.43
238 239 6.366332 GTGGATTTATCTACCATCGTTGCTAG 59.634 42.308 0.00 0.00 36.09 3.42
239 240 6.220930 GTGGATTTATCTACCATCGTTGCTA 58.779 40.000 0.00 0.00 36.09 3.49
247 248 5.623956 TTGACCGTGGATTTATCTACCAT 57.376 39.130 0.00 0.00 35.16 3.55
252 253 5.745227 ACATCTTTGACCGTGGATTTATCT 58.255 37.500 0.00 0.00 0.00 1.98
255 256 5.046591 AGAGACATCTTTGACCGTGGATTTA 60.047 40.000 0.00 0.00 28.57 1.40
257 258 3.261897 AGAGACATCTTTGACCGTGGATT 59.738 43.478 0.00 0.00 28.57 3.01
268 269 3.840666 TCTACCCTGCAAGAGACATCTTT 59.159 43.478 0.00 0.00 43.45 2.52
291 292 5.186409 TCAATGCTACTAGGAGTACGGTTTT 59.814 40.000 3.31 0.00 0.00 2.43
297 298 5.692613 ATCGTCAATGCTACTAGGAGTAC 57.307 43.478 3.31 0.00 0.00 2.73
298 299 5.826208 TCAATCGTCAATGCTACTAGGAGTA 59.174 40.000 3.31 0.00 0.00 2.59
479 486 1.835483 GAGCACGACTGTGGCAAGTG 61.835 60.000 6.99 5.73 46.51 3.16
481 488 0.882042 AAGAGCACGACTGTGGCAAG 60.882 55.000 0.00 0.00 46.51 4.01
483 504 1.300931 GAAGAGCACGACTGTGGCA 60.301 57.895 0.00 0.00 46.51 4.92
489 510 0.322975 ATTGCAGGAAGAGCACGACT 59.677 50.000 0.00 0.00 42.54 4.18
496 517 3.623906 TTCCAGAGATTGCAGGAAGAG 57.376 47.619 0.00 0.00 35.35 2.85
515 536 5.234466 AGTACTGCCACTGAAGATTTCTT 57.766 39.130 0.00 0.00 39.23 2.52
516 537 4.899352 AGTACTGCCACTGAAGATTTCT 57.101 40.909 0.00 0.00 0.00 2.52
517 538 4.563184 CGTAGTACTGCCACTGAAGATTTC 59.437 45.833 5.39 0.00 0.00 2.17
519 540 3.510360 ACGTAGTACTGCCACTGAAGATT 59.490 43.478 5.39 0.00 41.94 2.40
520 541 3.090037 ACGTAGTACTGCCACTGAAGAT 58.910 45.455 5.39 0.00 41.94 2.40
521 542 2.511659 ACGTAGTACTGCCACTGAAGA 58.488 47.619 5.39 0.00 41.94 2.87
522 543 3.243336 GAACGTAGTACTGCCACTGAAG 58.757 50.000 5.39 0.00 45.00 3.02
523 544 2.029649 GGAACGTAGTACTGCCACTGAA 60.030 50.000 5.39 0.00 45.00 3.02
524 545 1.542915 GGAACGTAGTACTGCCACTGA 59.457 52.381 5.39 0.00 45.00 3.41
525 546 1.271379 TGGAACGTAGTACTGCCACTG 59.729 52.381 5.39 0.00 45.00 3.66
526 547 1.544691 CTGGAACGTAGTACTGCCACT 59.455 52.381 5.39 0.00 45.00 4.00
527 548 1.992170 CTGGAACGTAGTACTGCCAC 58.008 55.000 5.39 0.00 45.00 5.01
528 549 0.245539 GCTGGAACGTAGTACTGCCA 59.754 55.000 5.39 4.57 45.00 4.92
529 550 0.801067 CGCTGGAACGTAGTACTGCC 60.801 60.000 5.39 0.00 45.00 4.85
530 551 0.169672 TCGCTGGAACGTAGTACTGC 59.830 55.000 5.39 2.60 45.00 4.40
531 552 1.794437 GCTCGCTGGAACGTAGTACTG 60.794 57.143 5.39 0.00 45.00 2.74
532 553 0.450983 GCTCGCTGGAACGTAGTACT 59.549 55.000 0.00 0.00 45.00 2.73
533 554 0.450983 AGCTCGCTGGAACGTAGTAC 59.549 55.000 0.00 0.00 45.00 2.73
536 557 0.802607 GGAAGCTCGCTGGAACGTAG 60.803 60.000 0.00 0.00 0.00 3.51
559 580 1.444895 GCTGAAATGGGCTGTTGCG 60.445 57.895 0.00 0.00 40.82 4.85
563 584 1.228644 TGCTGCTGAAATGGGCTGT 60.229 52.632 0.00 0.00 0.00 4.40
566 587 2.183555 GCTGCTGCTGAAATGGGC 59.816 61.111 10.92 0.00 36.03 5.36
583 604 3.127533 CGGGAAAGGCAAGCGGAG 61.128 66.667 0.00 0.00 0.00 4.63
584 605 4.715523 CCGGGAAAGGCAAGCGGA 62.716 66.667 0.00 0.00 0.00 5.54
592 613 2.268076 CCTGTTGTGCCGGGAAAGG 61.268 63.158 2.18 1.86 32.09 3.11
593 614 1.228124 TCCTGTTGTGCCGGGAAAG 60.228 57.895 2.18 0.00 36.94 2.62
594 615 1.527380 GTCCTGTTGTGCCGGGAAA 60.527 57.895 2.18 0.00 41.53 3.13
595 616 2.112297 GTCCTGTTGTGCCGGGAA 59.888 61.111 2.18 0.00 41.53 3.97
596 617 3.164977 TGTCCTGTTGTGCCGGGA 61.165 61.111 2.18 0.00 37.56 5.14
597 618 2.978010 GTGTCCTGTTGTGCCGGG 60.978 66.667 2.18 0.00 0.00 5.73
598 619 3.345808 CGTGTCCTGTTGTGCCGG 61.346 66.667 0.00 0.00 0.00 6.13
599 620 4.012895 GCGTGTCCTGTTGTGCCG 62.013 66.667 0.00 0.00 0.00 5.69
600 621 2.899838 TGCGTGTCCTGTTGTGCC 60.900 61.111 0.00 0.00 0.00 5.01
601 622 2.180204 AGTGCGTGTCCTGTTGTGC 61.180 57.895 0.00 0.00 0.00 4.57
602 623 1.643292 CAGTGCGTGTCCTGTTGTG 59.357 57.895 0.00 0.00 0.00 3.33
603 624 1.523711 CCAGTGCGTGTCCTGTTGT 60.524 57.895 0.00 0.00 0.00 3.32
604 625 1.498865 GACCAGTGCGTGTCCTGTTG 61.499 60.000 0.00 0.00 0.00 3.33
605 626 1.227556 GACCAGTGCGTGTCCTGTT 60.228 57.895 0.00 0.00 0.00 3.16
606 627 2.421739 GACCAGTGCGTGTCCTGT 59.578 61.111 0.00 0.00 0.00 4.00
607 628 2.357517 GGACCAGTGCGTGTCCTG 60.358 66.667 9.18 0.00 46.13 3.86
610 631 1.664965 GACTGGACCAGTGCGTGTC 60.665 63.158 31.87 12.51 45.44 3.67
611 632 2.421739 GACTGGACCAGTGCGTGT 59.578 61.111 31.87 6.70 45.44 4.49
612 633 2.357517 GGACTGGACCAGTGCGTG 60.358 66.667 31.87 2.91 45.44 5.34
645 666 1.005748 TTGAGAGCACTGACCAGCG 60.006 57.895 0.00 0.00 35.48 5.18
646 667 0.319728 TCTTGAGAGCACTGACCAGC 59.680 55.000 0.00 0.00 0.00 4.85
647 668 1.617850 ACTCTTGAGAGCACTGACCAG 59.382 52.381 7.91 0.00 45.79 4.00
648 669 1.709578 ACTCTTGAGAGCACTGACCA 58.290 50.000 7.91 0.00 45.79 4.02
649 670 2.682836 GAACTCTTGAGAGCACTGACC 58.317 52.381 7.91 0.00 45.79 4.02
650 671 2.323959 CGAACTCTTGAGAGCACTGAC 58.676 52.381 7.91 0.00 45.79 3.51
651 672 1.270826 CCGAACTCTTGAGAGCACTGA 59.729 52.381 7.91 0.00 45.79 3.41
652 673 1.000283 ACCGAACTCTTGAGAGCACTG 60.000 52.381 7.91 2.44 45.79 3.66
653 674 1.333177 ACCGAACTCTTGAGAGCACT 58.667 50.000 7.91 0.00 45.79 4.40
654 675 2.987821 GTTACCGAACTCTTGAGAGCAC 59.012 50.000 7.91 2.21 45.79 4.40
655 676 2.351447 CGTTACCGAACTCTTGAGAGCA 60.351 50.000 7.91 0.00 40.21 4.26
656 677 2.095364 TCGTTACCGAACTCTTGAGAGC 60.095 50.000 7.91 0.00 41.04 4.09
657 678 3.826236 TCGTTACCGAACTCTTGAGAG 57.174 47.619 6.48 6.48 42.14 3.20
714 735 0.388134 GGCTTGTTCGTCTCGTAGCA 60.388 55.000 0.00 0.00 0.00 3.49
781 802 0.034059 GACACAGAGGTCACTGGTGG 59.966 60.000 0.00 0.00 41.59 4.61
807 833 2.123982 GGCCAGGGATTGCAGGAG 60.124 66.667 0.00 0.00 0.00 3.69
828 854 2.594303 TTGGGTTGGTGCGAGCTG 60.594 61.111 0.00 0.00 0.00 4.24
829 855 2.281761 CTTGGGTTGGTGCGAGCT 60.282 61.111 0.00 0.00 0.00 4.09
830 856 3.365265 CCTTGGGTTGGTGCGAGC 61.365 66.667 0.00 0.00 0.00 5.03
930 963 2.443016 CGCTACCTCCAGGCTCCT 60.443 66.667 0.00 0.00 39.32 3.69
971 1004 4.219288 CAGAAAAGCTACAAGGAGCCAAAT 59.781 41.667 0.00 0.00 43.97 2.32
1004 1037 2.092753 TGTCCGTCGGAAGTACTCCTAT 60.093 50.000 17.32 0.00 42.85 2.57
1007 1040 1.101331 ATGTCCGTCGGAAGTACTCC 58.899 55.000 17.32 1.85 41.40 3.85
1008 1041 1.471684 ACATGTCCGTCGGAAGTACTC 59.528 52.381 17.32 2.66 31.38 2.59
1009 1042 1.542492 ACATGTCCGTCGGAAGTACT 58.458 50.000 17.32 0.00 31.38 2.73
1010 1043 2.358939 AACATGTCCGTCGGAAGTAC 57.641 50.000 17.32 4.55 31.38 2.73
1011 1044 3.006110 AGAAAACATGTCCGTCGGAAGTA 59.994 43.478 17.32 6.06 31.38 2.24
1012 1045 2.140717 GAAAACATGTCCGTCGGAAGT 58.859 47.619 17.32 12.29 31.38 3.01
1013 1046 2.413837 AGAAAACATGTCCGTCGGAAG 58.586 47.619 17.32 11.61 31.38 3.46
1014 1047 2.536761 AGAAAACATGTCCGTCGGAA 57.463 45.000 17.32 7.08 31.38 4.30
1015 1048 2.036733 AGAAGAAAACATGTCCGTCGGA 59.963 45.455 10.71 10.71 0.00 4.55
1016 1049 2.412089 GAGAAGAAAACATGTCCGTCGG 59.588 50.000 4.39 4.39 0.00 4.79
1144 1178 2.081212 CGAGCAACACCGAGACGAC 61.081 63.158 0.00 0.00 0.00 4.34
1183 1217 2.031495 AGGTAGTTGTCCTCAGGCTT 57.969 50.000 0.00 0.00 0.00 4.35
1184 1218 3.796866 AGGTAGTTGTCCTCAGGCT 57.203 52.632 0.00 0.00 0.00 4.58
1389 1435 1.339610 CTGATGGCGAAGGAGTAGGAG 59.660 57.143 0.00 0.00 0.00 3.69
1626 1672 2.737376 GGCACGAACGAGACCACC 60.737 66.667 0.14 0.00 0.00 4.61
1996 2042 2.892425 CCCGTCGAATGAGCTGCC 60.892 66.667 0.00 0.00 0.00 4.85
2141 2187 2.125912 CGAGGTCCTGCTTCACGG 60.126 66.667 0.00 0.00 0.00 4.94
2142 2188 1.444553 GTCGAGGTCCTGCTTCACG 60.445 63.158 0.00 0.00 0.00 4.35
2143 2189 1.079750 GGTCGAGGTCCTGCTTCAC 60.080 63.158 0.00 0.00 0.00 3.18
2144 2190 1.228894 AGGTCGAGGTCCTGCTTCA 60.229 57.895 0.00 0.00 33.62 3.02
2145 2191 1.513622 GAGGTCGAGGTCCTGCTTC 59.486 63.158 0.00 0.00 35.20 3.86
2146 2192 2.344203 CGAGGTCGAGGTCCTGCTT 61.344 63.158 0.00 0.00 43.02 3.91
2147 2193 2.752238 CGAGGTCGAGGTCCTGCT 60.752 66.667 0.00 0.00 43.02 4.24
2148 2194 4.500116 GCGAGGTCGAGGTCCTGC 62.500 72.222 2.94 0.00 43.02 4.85
2149 2195 3.827898 GGCGAGGTCGAGGTCCTG 61.828 72.222 2.94 0.00 43.02 3.86
2204 2259 2.954753 GCAGGCAACACGAAGTCCG 61.955 63.158 0.00 0.00 41.61 4.79
2337 2392 3.642008 CTGGACGACGACGACGGAC 62.642 68.421 22.36 14.88 44.46 4.79
2392 2447 1.507141 CCACACACGGAGCCAAGAAC 61.507 60.000 0.00 0.00 0.00 3.01
2467 2522 2.107366 CTCCACCTCCTTCTCCTTCTC 58.893 57.143 0.00 0.00 0.00 2.87
2476 2534 1.229658 CACCCTCCTCCACCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
2477 2535 2.452114 CACCCTCCTCCACCTCCT 59.548 66.667 0.00 0.00 0.00 3.69
2483 2541 2.935481 CCTTGGCACCCTCCTCCA 60.935 66.667 0.00 0.00 0.00 3.86
2604 2665 2.358737 GGAGTGTTCCCGGCAGTG 60.359 66.667 0.00 0.00 37.53 3.66
2613 2674 2.182030 CTCGCTCCCGGAGTGTTC 59.818 66.667 24.26 4.04 40.59 3.18
2685 2752 1.951181 GCGTCGCGTCTTGCAACATA 61.951 55.000 5.77 0.00 46.97 2.29
2886 2953 3.506096 TCGCAGTAGCCGACGAGG 61.506 66.667 0.00 0.00 44.97 4.63
3637 3750 2.181021 GTAGTCCAGCCCGTCGTG 59.819 66.667 0.00 0.00 0.00 4.35
3638 3751 2.035312 AGTAGTCCAGCCCGTCGT 59.965 61.111 0.00 0.00 0.00 4.34
3645 3758 1.136984 CACGTCGGAGTAGTCCAGC 59.863 63.158 16.94 7.29 44.18 4.85
3653 3766 2.143594 GAGGCTGTTCACGTCGGAGT 62.144 60.000 0.00 0.00 0.00 3.85
3665 3778 2.371841 TCTGTAACCATGTTGAGGCTGT 59.628 45.455 0.00 0.00 0.00 4.40
3728 3841 3.624861 GTCTGTGAAATCATCATCGGCTT 59.375 43.478 0.00 0.00 40.97 4.35
3738 3854 2.470983 TGGATGCGTCTGTGAAATCA 57.529 45.000 5.77 0.00 0.00 2.57
3894 4011 7.481798 CGAAAATGCTTGTAGTATTTGTCCTTC 59.518 37.037 3.99 0.00 39.13 3.46
4111 4246 6.442952 AGAGATCGATCAAATTCTTCCTACG 58.557 40.000 26.47 0.00 0.00 3.51
4129 4264 1.028905 CTGGTGAGGGTCGAGAGATC 58.971 60.000 0.00 0.00 45.19 2.75
4157 4292 1.338020 CAAGCTTTCACCCAGTGGAAC 59.662 52.381 11.95 0.00 33.87 3.62
4240 4376 2.746277 ACGGCGAAGACAATGGCC 60.746 61.111 16.62 0.00 42.14 5.36
4269 4405 1.221840 CTGCCAATGGTCGTAGCCT 59.778 57.895 0.00 0.00 0.00 4.58
4283 4419 1.538687 AAAACATGAGCCCAGCTGCC 61.539 55.000 8.66 0.77 39.88 4.85
4406 4542 2.443016 CGCAGCCCTAGGAGGAGT 60.443 66.667 11.48 0.00 37.67 3.85
4424 4560 4.640690 AGGAGCCCCCGTGACAGT 62.641 66.667 0.00 0.00 40.87 3.55
4505 4671 2.262915 CGTGACAGTCTCAGCCCC 59.737 66.667 1.31 0.00 0.00 5.80
4512 4678 2.997897 GAGCCCCCGTGACAGTCT 60.998 66.667 1.31 0.00 0.00 3.24
4550 4716 2.279784 CGATCAAGGAGCCCTCGC 60.280 66.667 0.00 0.00 30.89 5.03
4669 4835 7.316640 TGCTTTTAAACATACTTGTGTTGTGT 58.683 30.769 0.00 0.00 41.22 3.72
4810 5187 2.685106 TTCTGTGGGCATGGGTTTAA 57.315 45.000 0.00 0.00 0.00 1.52
4817 5194 0.666913 GCTGCTATTCTGTGGGCATG 59.333 55.000 0.00 0.00 34.12 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.