Multiple sequence alignment - TraesCS3D01G134200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G134200 chr3D 100.000 3539 0 0 1 3539 93362364 93358826 0.000000e+00 6536.0
1 TraesCS3D01G134200 chr3D 88.254 315 30 6 1 309 512953371 512953684 1.550000e-98 370.0
2 TraesCS3D01G134200 chr3D 87.937 315 28 5 1 315 464767162 464767466 2.600000e-96 363.0
3 TraesCS3D01G134200 chr3A 89.248 1516 78 38 319 1812 546597451 546598903 0.000000e+00 1818.0
4 TraesCS3D01G134200 chr3A 91.828 979 43 21 1860 2814 546598905 546599870 0.000000e+00 1330.0
5 TraesCS3D01G134200 chr3A 80.864 162 24 7 320 478 177082115 177082272 1.730000e-23 121.0
6 TraesCS3D01G134200 chr3A 79.141 163 22 9 1102 1258 479781192 479781348 6.250000e-18 102.0
7 TraesCS3D01G134200 chr3B 93.434 929 24 14 891 1819 142729176 142730067 0.000000e+00 1343.0
8 TraesCS3D01G134200 chr3B 91.516 884 45 16 1874 2736 142730156 142731030 0.000000e+00 1190.0
9 TraesCS3D01G134200 chr3B 89.247 465 38 10 319 782 142728707 142729160 3.960000e-159 571.0
10 TraesCS3D01G134200 chr3B 93.930 313 17 2 1 313 727419774 727419464 4.140000e-129 472.0
11 TraesCS3D01G134200 chr3B 79.141 163 22 9 1102 1258 466297169 466297325 6.250000e-18 102.0
12 TraesCS3D01G134200 chr7D 84.302 688 99 9 2855 3538 628545586 628546268 0.000000e+00 664.0
13 TraesCS3D01G134200 chr7D 82.128 733 110 17 2819 3539 524552574 524551851 3.020000e-170 608.0
14 TraesCS3D01G134200 chr7D 75.796 157 32 6 1094 1247 541494837 541494990 1.360000e-09 75.0
15 TraesCS3D01G134200 chr6B 82.931 662 104 6 2885 3539 449045956 449046615 3.940000e-164 588.0
16 TraesCS3D01G134200 chr6B 86.301 73 5 5 1650 1720 422353625 422353694 1.360000e-09 75.0
17 TraesCS3D01G134200 chr7A 82.722 654 101 11 2893 3537 115264704 115264054 3.960000e-159 571.0
18 TraesCS3D01G134200 chr7A 83.770 610 89 8 2935 3539 648523372 648522768 1.430000e-158 569.0
19 TraesCS3D01G134200 chr1B 82.006 678 113 7 2867 3537 537317337 537318012 5.130000e-158 568.0
20 TraesCS3D01G134200 chr1B 81.709 667 110 10 2872 3530 632704269 632704931 2.400000e-151 545.0
21 TraesCS3D01G134200 chr1B 85.366 123 6 6 338 453 40364779 40364896 2.230000e-22 117.0
22 TraesCS3D01G134200 chr1B 76.210 248 40 13 319 563 418680497 418680728 2.890000e-21 113.0
23 TraesCS3D01G134200 chr4A 81.694 661 105 11 2887 3539 582473514 582472862 1.450000e-148 536.0
24 TraesCS3D01G134200 chr4A 80.165 121 22 2 383 503 66342990 66342872 4.870000e-14 89.8
25 TraesCS3D01G134200 chr6D 81.762 647 109 8 2896 3539 6960371 6959731 1.870000e-147 532.0
26 TraesCS3D01G134200 chr6D 86.486 74 5 5 1649 1720 269741014 269741084 3.790000e-10 76.8
27 TraesCS3D01G134200 chr4D 95.860 314 12 1 2 315 302692365 302692053 1.130000e-139 507.0
28 TraesCS3D01G134200 chr4D 87.742 310 35 3 1 310 47525991 47525685 3.360000e-95 359.0
29 TraesCS3D01G134200 chr2D 94.620 316 15 2 1 315 599891607 599891921 4.110000e-134 488.0
30 TraesCS3D01G134200 chr5A 92.903 310 20 2 2 310 229785414 229785106 1.940000e-122 449.0
31 TraesCS3D01G134200 chr1D 89.968 309 23 5 1 309 31025004 31025304 3.310000e-105 392.0
32 TraesCS3D01G134200 chr5D 88.959 317 29 3 3 315 130456812 130456498 1.540000e-103 387.0
33 TraesCS3D01G134200 chr5D 83.594 128 19 2 336 462 427224867 427224741 6.210000e-23 119.0
34 TraesCS3D01G134200 chr5B 82.000 150 23 4 338 484 516815352 516815204 1.330000e-24 124.0
35 TraesCS3D01G134200 chr5B 96.970 33 1 0 1405 1437 576249625 576249657 4.940000e-04 56.5
36 TraesCS3D01G134200 chr2A 76.987 239 33 16 319 556 562642569 562642786 2.230000e-22 117.0
37 TraesCS3D01G134200 chr6A 86.301 73 5 5 1650 1720 383974776 383974845 1.360000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G134200 chr3D 93358826 93362364 3538 True 6536.000000 6536 100.000 1 3539 1 chr3D.!!$R1 3538
1 TraesCS3D01G134200 chr3A 546597451 546599870 2419 False 1574.000000 1818 90.538 319 2814 2 chr3A.!!$F3 2495
2 TraesCS3D01G134200 chr3B 142728707 142731030 2323 False 1034.666667 1343 91.399 319 2736 3 chr3B.!!$F2 2417
3 TraesCS3D01G134200 chr7D 628545586 628546268 682 False 664.000000 664 84.302 2855 3538 1 chr7D.!!$F2 683
4 TraesCS3D01G134200 chr7D 524551851 524552574 723 True 608.000000 608 82.128 2819 3539 1 chr7D.!!$R1 720
5 TraesCS3D01G134200 chr6B 449045956 449046615 659 False 588.000000 588 82.931 2885 3539 1 chr6B.!!$F2 654
6 TraesCS3D01G134200 chr7A 115264054 115264704 650 True 571.000000 571 82.722 2893 3537 1 chr7A.!!$R1 644
7 TraesCS3D01G134200 chr7A 648522768 648523372 604 True 569.000000 569 83.770 2935 3539 1 chr7A.!!$R2 604
8 TraesCS3D01G134200 chr1B 537317337 537318012 675 False 568.000000 568 82.006 2867 3537 1 chr1B.!!$F3 670
9 TraesCS3D01G134200 chr1B 632704269 632704931 662 False 545.000000 545 81.709 2872 3530 1 chr1B.!!$F4 658
10 TraesCS3D01G134200 chr4A 582472862 582473514 652 True 536.000000 536 81.694 2887 3539 1 chr4A.!!$R2 652
11 TraesCS3D01G134200 chr6D 6959731 6960371 640 True 532.000000 532 81.762 2896 3539 1 chr6D.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.034186 TTGATCACCATGGCAGGGTC 60.034 55.0 22.82 11.31 36.19 4.46 F
261 262 0.038599 TGGCTGTGTGCATCCTGAAT 59.961 50.0 0.00 0.00 45.15 2.57 F
836 846 0.043053 CCGCACAGAAATATCGCACG 60.043 55.0 0.00 0.00 0.00 5.34 F
1624 1651 0.107459 CTGCTTCCTTACCCCTGCTC 60.107 60.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 1849 0.033504 TGGGTCTGCTCAACGAACTC 59.966 55.0 0.0 0.0 0.0 3.01 R
1831 1858 0.250513 CTAGGGTGTTGGGTCTGCTC 59.749 60.0 0.0 0.0 0.0 4.26 R
2291 2361 0.741221 GTCGAACCCTGCCATGAGAC 60.741 60.0 0.0 0.0 0.0 3.36 R
2841 2936 0.179113 CCCACCAACACACACTTTGC 60.179 55.0 0.0 0.0 0.0 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.288666 GCAGTGACCTTGTTGAAGTCA 58.711 47.619 0.00 0.00 0.00 3.41
21 22 2.880890 GCAGTGACCTTGTTGAAGTCAT 59.119 45.455 0.00 0.00 0.00 3.06
22 23 3.316308 GCAGTGACCTTGTTGAAGTCATT 59.684 43.478 0.00 0.00 0.00 2.57
23 24 4.790766 GCAGTGACCTTGTTGAAGTCATTG 60.791 45.833 9.65 9.65 34.19 2.82
24 25 4.336433 CAGTGACCTTGTTGAAGTCATTGT 59.664 41.667 6.69 0.00 30.80 2.71
25 26 4.949856 AGTGACCTTGTTGAAGTCATTGTT 59.050 37.500 0.00 0.00 0.00 2.83
26 27 5.418840 AGTGACCTTGTTGAAGTCATTGTTT 59.581 36.000 0.00 0.00 0.00 2.83
27 28 6.071391 AGTGACCTTGTTGAAGTCATTGTTTT 60.071 34.615 0.00 0.00 0.00 2.43
28 29 6.034898 GTGACCTTGTTGAAGTCATTGTTTTG 59.965 38.462 0.00 0.00 0.00 2.44
29 30 5.418676 ACCTTGTTGAAGTCATTGTTTTGG 58.581 37.500 0.00 0.00 0.00 3.28
30 31 5.186797 ACCTTGTTGAAGTCATTGTTTTGGA 59.813 36.000 0.00 0.00 0.00 3.53
31 32 6.105333 CCTTGTTGAAGTCATTGTTTTGGAA 58.895 36.000 0.00 0.00 0.00 3.53
32 33 6.593382 CCTTGTTGAAGTCATTGTTTTGGAAA 59.407 34.615 0.00 0.00 0.00 3.13
33 34 6.959671 TGTTGAAGTCATTGTTTTGGAAAC 57.040 33.333 0.00 0.00 0.00 2.78
34 35 6.459066 TGTTGAAGTCATTGTTTTGGAAACA 58.541 32.000 2.34 2.34 39.83 2.83
35 36 6.367422 TGTTGAAGTCATTGTTTTGGAAACAC 59.633 34.615 5.79 0.00 42.67 3.32
36 37 5.098893 TGAAGTCATTGTTTTGGAAACACG 58.901 37.500 5.79 1.79 42.67 4.49
37 38 4.712122 AGTCATTGTTTTGGAAACACGT 57.288 36.364 5.79 0.00 42.67 4.49
38 39 5.066968 AGTCATTGTTTTGGAAACACGTT 57.933 34.783 5.79 0.00 42.67 3.99
39 40 5.099575 AGTCATTGTTTTGGAAACACGTTC 58.900 37.500 5.79 0.00 42.67 3.95
40 41 5.099575 GTCATTGTTTTGGAAACACGTTCT 58.900 37.500 5.79 0.00 42.67 3.01
41 42 5.575218 GTCATTGTTTTGGAAACACGTTCTT 59.425 36.000 5.79 0.00 42.67 2.52
42 43 6.090223 GTCATTGTTTTGGAAACACGTTCTTT 59.910 34.615 5.79 0.00 42.67 2.52
43 44 6.309251 TCATTGTTTTGGAAACACGTTCTTTC 59.691 34.615 5.79 6.85 42.67 2.62
44 45 5.379732 TGTTTTGGAAACACGTTCTTTCT 57.620 34.783 12.87 0.00 42.67 2.52
45 46 5.774630 TGTTTTGGAAACACGTTCTTTCTT 58.225 33.333 12.87 0.00 42.67 2.52
46 47 5.859648 TGTTTTGGAAACACGTTCTTTCTTC 59.140 36.000 12.87 1.96 42.67 2.87
47 48 5.630661 TTTGGAAACACGTTCTTTCTTCA 57.369 34.783 12.87 3.96 42.67 3.02
48 49 4.875544 TGGAAACACGTTCTTTCTTCAG 57.124 40.909 12.87 0.00 36.40 3.02
49 50 3.625764 TGGAAACACGTTCTTTCTTCAGG 59.374 43.478 12.87 0.00 36.40 3.86
50 51 3.003378 GGAAACACGTTCTTTCTTCAGGG 59.997 47.826 12.87 0.00 36.40 4.45
51 52 3.277142 AACACGTTCTTTCTTCAGGGT 57.723 42.857 0.00 0.00 0.00 4.34
52 53 2.561569 ACACGTTCTTTCTTCAGGGTG 58.438 47.619 0.00 0.00 0.00 4.61
53 54 2.169769 ACACGTTCTTTCTTCAGGGTGA 59.830 45.455 0.00 0.00 0.00 4.02
54 55 3.202906 CACGTTCTTTCTTCAGGGTGAA 58.797 45.455 0.00 0.00 34.79 3.18
55 56 3.625764 CACGTTCTTTCTTCAGGGTGAAA 59.374 43.478 0.00 0.00 35.73 2.69
56 57 4.095782 CACGTTCTTTCTTCAGGGTGAAAA 59.904 41.667 0.00 0.00 35.73 2.29
57 58 4.095932 ACGTTCTTTCTTCAGGGTGAAAAC 59.904 41.667 0.00 0.00 35.73 2.43
58 59 4.335594 CGTTCTTTCTTCAGGGTGAAAACT 59.664 41.667 0.00 0.00 35.73 2.66
59 60 5.163652 CGTTCTTTCTTCAGGGTGAAAACTT 60.164 40.000 0.00 0.00 35.73 2.66
60 61 6.037830 CGTTCTTTCTTCAGGGTGAAAACTTA 59.962 38.462 0.00 0.00 35.73 2.24
61 62 6.937436 TCTTTCTTCAGGGTGAAAACTTAC 57.063 37.500 0.00 0.00 35.73 2.34
62 63 5.526111 TCTTTCTTCAGGGTGAAAACTTACG 59.474 40.000 0.00 0.00 35.73 3.18
63 64 4.675976 TCTTCAGGGTGAAAACTTACGA 57.324 40.909 0.00 0.00 35.73 3.43
64 65 5.223449 TCTTCAGGGTGAAAACTTACGAT 57.777 39.130 0.00 0.00 35.73 3.73
65 66 5.235516 TCTTCAGGGTGAAAACTTACGATC 58.764 41.667 0.00 0.00 35.73 3.69
66 67 4.884668 TCAGGGTGAAAACTTACGATCT 57.115 40.909 0.00 0.00 0.00 2.75
67 68 5.223449 TCAGGGTGAAAACTTACGATCTT 57.777 39.130 0.00 0.00 0.00 2.40
68 69 5.617252 TCAGGGTGAAAACTTACGATCTTT 58.383 37.500 0.00 0.00 0.00 2.52
69 70 5.468746 TCAGGGTGAAAACTTACGATCTTTG 59.531 40.000 0.00 0.00 0.00 2.77
70 71 5.468746 CAGGGTGAAAACTTACGATCTTTGA 59.531 40.000 0.00 0.00 0.00 2.69
71 72 6.149474 CAGGGTGAAAACTTACGATCTTTGAT 59.851 38.462 0.00 0.00 0.00 2.57
72 73 6.371825 AGGGTGAAAACTTACGATCTTTGATC 59.628 38.462 0.00 0.00 0.00 2.92
73 74 6.148811 GGGTGAAAACTTACGATCTTTGATCA 59.851 38.462 8.09 0.00 0.00 2.92
74 75 7.237173 GGTGAAAACTTACGATCTTTGATCAG 58.763 38.462 8.09 3.95 0.00 2.90
75 76 7.237173 GTGAAAACTTACGATCTTTGATCAGG 58.763 38.462 8.09 0.00 0.00 3.86
76 77 5.803020 AAACTTACGATCTTTGATCAGGC 57.197 39.130 8.09 0.00 0.00 4.85
77 78 4.471904 ACTTACGATCTTTGATCAGGCA 57.528 40.909 8.09 0.00 0.00 4.75
78 79 4.832248 ACTTACGATCTTTGATCAGGCAA 58.168 39.130 8.09 0.00 0.00 4.52
79 80 4.631813 ACTTACGATCTTTGATCAGGCAAC 59.368 41.667 8.09 0.00 0.00 4.17
80 81 2.002586 ACGATCTTTGATCAGGCAACG 58.997 47.619 8.09 4.03 46.39 4.10
81 82 2.270923 CGATCTTTGATCAGGCAACGA 58.729 47.619 8.09 0.00 46.39 3.85
82 83 2.029728 CGATCTTTGATCAGGCAACGAC 59.970 50.000 8.09 0.00 46.39 4.34
83 84 2.542020 TCTTTGATCAGGCAACGACA 57.458 45.000 0.00 0.00 46.39 4.35
84 85 2.844946 TCTTTGATCAGGCAACGACAA 58.155 42.857 0.00 0.00 46.39 3.18
85 86 2.548057 TCTTTGATCAGGCAACGACAAC 59.452 45.455 0.00 0.00 46.39 3.32
86 87 0.865111 TTGATCAGGCAACGACAACG 59.135 50.000 0.00 0.00 46.39 4.10
87 88 1.132640 GATCAGGCAACGACAACGC 59.867 57.895 0.00 0.00 43.96 4.84
88 89 1.291877 GATCAGGCAACGACAACGCT 61.292 55.000 0.00 0.00 43.96 5.07
89 90 0.884704 ATCAGGCAACGACAACGCTT 60.885 50.000 0.00 0.00 43.96 4.68
90 91 1.369209 CAGGCAACGACAACGCTTG 60.369 57.895 0.00 0.00 43.96 4.01
92 93 1.654137 GGCAACGACAACGCTTGTG 60.654 57.895 7.89 4.35 45.52 3.33
93 94 2.285857 GCAACGACAACGCTTGTGC 61.286 57.895 7.89 2.85 45.52 4.57
94 95 1.351707 CAACGACAACGCTTGTGCT 59.648 52.632 7.89 0.00 45.52 4.40
95 96 0.248054 CAACGACAACGCTTGTGCTT 60.248 50.000 7.89 0.00 45.52 3.91
96 97 0.450184 AACGACAACGCTTGTGCTTT 59.550 45.000 7.89 0.00 45.52 3.51
97 98 0.450184 ACGACAACGCTTGTGCTTTT 59.550 45.000 7.89 0.00 45.52 2.27
98 99 1.135517 ACGACAACGCTTGTGCTTTTT 60.136 42.857 7.89 0.00 45.52 1.94
118 119 1.302511 TCCTTCTTGGAGGCGTTGC 60.303 57.895 0.00 0.00 40.56 4.17
119 120 1.302832 CCTTCTTGGAGGCGTTGCT 60.303 57.895 0.00 0.00 38.35 3.91
120 121 0.890996 CCTTCTTGGAGGCGTTGCTT 60.891 55.000 0.00 0.00 38.35 3.91
121 122 0.954452 CTTCTTGGAGGCGTTGCTTT 59.046 50.000 0.00 0.00 0.00 3.51
122 123 1.338020 CTTCTTGGAGGCGTTGCTTTT 59.662 47.619 0.00 0.00 0.00 2.27
123 124 0.667993 TCTTGGAGGCGTTGCTTTTG 59.332 50.000 0.00 0.00 0.00 2.44
124 125 0.667993 CTTGGAGGCGTTGCTTTTGA 59.332 50.000 0.00 0.00 0.00 2.69
125 126 1.066908 CTTGGAGGCGTTGCTTTTGAA 59.933 47.619 0.00 0.00 0.00 2.69
126 127 0.667993 TGGAGGCGTTGCTTTTGAAG 59.332 50.000 0.00 0.00 0.00 3.02
127 128 0.951558 GGAGGCGTTGCTTTTGAAGA 59.048 50.000 0.00 0.00 0.00 2.87
128 129 1.336755 GGAGGCGTTGCTTTTGAAGAA 59.663 47.619 0.00 0.00 0.00 2.52
129 130 2.385315 GAGGCGTTGCTTTTGAAGAAC 58.615 47.619 0.00 0.00 0.00 3.01
130 131 1.067060 AGGCGTTGCTTTTGAAGAACC 59.933 47.619 0.00 0.00 0.00 3.62
131 132 1.067060 GGCGTTGCTTTTGAAGAACCT 59.933 47.619 0.00 0.00 0.00 3.50
132 133 2.481276 GGCGTTGCTTTTGAAGAACCTT 60.481 45.455 0.00 0.00 0.00 3.50
133 134 2.789339 GCGTTGCTTTTGAAGAACCTTC 59.211 45.455 0.00 0.00 0.00 3.46
134 135 3.489229 GCGTTGCTTTTGAAGAACCTTCT 60.489 43.478 8.02 0.00 39.74 2.85
136 137 5.102313 CGTTGCTTTTGAAGAACCTTCTTT 58.898 37.500 8.02 0.00 46.84 2.52
137 138 5.230097 CGTTGCTTTTGAAGAACCTTCTTTC 59.770 40.000 8.02 0.00 46.84 2.62
138 139 6.333416 GTTGCTTTTGAAGAACCTTCTTTCT 58.667 36.000 8.02 0.00 46.84 2.52
139 140 7.480810 GTTGCTTTTGAAGAACCTTCTTTCTA 58.519 34.615 8.02 0.00 46.84 2.10
140 141 7.264373 TGCTTTTGAAGAACCTTCTTTCTAG 57.736 36.000 8.02 0.00 46.84 2.43
141 142 6.828785 TGCTTTTGAAGAACCTTCTTTCTAGT 59.171 34.615 8.02 0.00 46.84 2.57
142 143 7.012421 TGCTTTTGAAGAACCTTCTTTCTAGTC 59.988 37.037 8.02 0.00 46.84 2.59
143 144 7.520776 GCTTTTGAAGAACCTTCTTTCTAGTCC 60.521 40.741 8.02 0.00 46.84 3.85
144 145 5.135508 TGAAGAACCTTCTTTCTAGTCCG 57.864 43.478 8.02 0.00 46.84 4.79
145 146 4.021368 TGAAGAACCTTCTTTCTAGTCCGG 60.021 45.833 0.00 0.00 46.84 5.14
146 147 2.832733 AGAACCTTCTTTCTAGTCCGGG 59.167 50.000 0.00 0.00 33.89 5.73
147 148 2.322339 ACCTTCTTTCTAGTCCGGGT 57.678 50.000 0.00 0.00 0.00 5.28
148 149 1.900486 ACCTTCTTTCTAGTCCGGGTG 59.100 52.381 0.00 0.00 0.00 4.61
149 150 1.900486 CCTTCTTTCTAGTCCGGGTGT 59.100 52.381 0.00 0.00 0.00 4.16
150 151 2.302157 CCTTCTTTCTAGTCCGGGTGTT 59.698 50.000 0.00 0.00 0.00 3.32
151 152 3.326747 CTTCTTTCTAGTCCGGGTGTTG 58.673 50.000 0.00 0.00 0.00 3.33
152 153 2.322658 TCTTTCTAGTCCGGGTGTTGT 58.677 47.619 0.00 0.00 0.00 3.32
153 154 2.298163 TCTTTCTAGTCCGGGTGTTGTC 59.702 50.000 0.00 0.00 0.00 3.18
154 155 2.005370 TTCTAGTCCGGGTGTTGTCT 57.995 50.000 0.00 0.00 0.00 3.41
155 156 2.005370 TCTAGTCCGGGTGTTGTCTT 57.995 50.000 0.00 0.00 0.00 3.01
156 157 2.322658 TCTAGTCCGGGTGTTGTCTTT 58.677 47.619 0.00 0.00 0.00 2.52
157 158 2.036733 TCTAGTCCGGGTGTTGTCTTTG 59.963 50.000 0.00 0.00 0.00 2.77
158 159 0.179029 AGTCCGGGTGTTGTCTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
159 160 0.464916 GTCCGGGTGTTGTCTTTGGT 60.465 55.000 0.00 0.00 0.00 3.67
160 161 0.464735 TCCGGGTGTTGTCTTTGGTG 60.465 55.000 0.00 0.00 0.00 4.17
161 162 1.452145 CCGGGTGTTGTCTTTGGTGG 61.452 60.000 0.00 0.00 0.00 4.61
162 163 0.750182 CGGGTGTTGTCTTTGGTGGT 60.750 55.000 0.00 0.00 0.00 4.16
163 164 1.480789 GGGTGTTGTCTTTGGTGGTT 58.519 50.000 0.00 0.00 0.00 3.67
164 165 1.136110 GGGTGTTGTCTTTGGTGGTTG 59.864 52.381 0.00 0.00 0.00 3.77
165 166 1.822371 GGTGTTGTCTTTGGTGGTTGT 59.178 47.619 0.00 0.00 0.00 3.32
166 167 2.232696 GGTGTTGTCTTTGGTGGTTGTT 59.767 45.455 0.00 0.00 0.00 2.83
167 168 3.444388 GGTGTTGTCTTTGGTGGTTGTTA 59.556 43.478 0.00 0.00 0.00 2.41
168 169 4.439563 GGTGTTGTCTTTGGTGGTTGTTAG 60.440 45.833 0.00 0.00 0.00 2.34
169 170 4.396790 GTGTTGTCTTTGGTGGTTGTTAGA 59.603 41.667 0.00 0.00 0.00 2.10
170 171 4.638421 TGTTGTCTTTGGTGGTTGTTAGAG 59.362 41.667 0.00 0.00 0.00 2.43
171 172 4.497291 TGTCTTTGGTGGTTGTTAGAGT 57.503 40.909 0.00 0.00 0.00 3.24
172 173 4.196193 TGTCTTTGGTGGTTGTTAGAGTG 58.804 43.478 0.00 0.00 0.00 3.51
173 174 3.003378 GTCTTTGGTGGTTGTTAGAGTGC 59.997 47.826 0.00 0.00 0.00 4.40
174 175 3.118038 TCTTTGGTGGTTGTTAGAGTGCT 60.118 43.478 0.00 0.00 0.00 4.40
175 176 2.254546 TGGTGGTTGTTAGAGTGCTG 57.745 50.000 0.00 0.00 0.00 4.41
176 177 0.875059 GGTGGTTGTTAGAGTGCTGC 59.125 55.000 0.00 0.00 0.00 5.25
177 178 1.543429 GGTGGTTGTTAGAGTGCTGCT 60.543 52.381 0.00 0.00 0.00 4.24
178 179 2.289444 GGTGGTTGTTAGAGTGCTGCTA 60.289 50.000 0.00 0.00 0.00 3.49
179 180 2.737252 GTGGTTGTTAGAGTGCTGCTAC 59.263 50.000 0.00 0.00 0.00 3.58
180 181 2.632996 TGGTTGTTAGAGTGCTGCTACT 59.367 45.455 0.00 2.70 0.00 2.57
181 182 2.996621 GGTTGTTAGAGTGCTGCTACTG 59.003 50.000 9.00 0.00 0.00 2.74
182 183 2.370281 TGTTAGAGTGCTGCTACTGC 57.630 50.000 9.00 0.00 40.20 4.40
183 184 1.272781 GTTAGAGTGCTGCTACTGCG 58.727 55.000 9.00 0.00 43.34 5.18
185 186 1.667154 TAGAGTGCTGCTACTGCGGG 61.667 60.000 9.00 0.00 45.30 6.13
186 187 3.302347 GAGTGCTGCTACTGCGGGT 62.302 63.158 9.00 0.00 45.30 5.28
187 188 3.121030 GTGCTGCTACTGCGGGTG 61.121 66.667 0.00 0.00 45.30 4.61
188 189 3.310307 TGCTGCTACTGCGGGTGA 61.310 61.111 0.00 0.00 45.30 4.02
189 190 2.187946 GCTGCTACTGCGGGTGAT 59.812 61.111 0.00 0.00 45.30 3.06
190 191 1.450312 GCTGCTACTGCGGGTGATT 60.450 57.895 0.00 0.00 45.30 2.57
191 192 1.709147 GCTGCTACTGCGGGTGATTG 61.709 60.000 0.00 0.00 45.30 2.67
192 193 0.108186 CTGCTACTGCGGGTGATTGA 60.108 55.000 0.00 0.00 43.34 2.57
193 194 0.541392 TGCTACTGCGGGTGATTGAT 59.459 50.000 0.00 0.00 43.34 2.57
194 195 1.221414 GCTACTGCGGGTGATTGATC 58.779 55.000 0.00 0.00 0.00 2.92
195 196 1.473257 GCTACTGCGGGTGATTGATCA 60.473 52.381 0.00 0.00 0.00 2.92
205 206 2.061509 TGATTGATCACCATGGCAGG 57.938 50.000 13.04 1.41 0.00 4.85
206 207 1.325355 GATTGATCACCATGGCAGGG 58.675 55.000 18.06 18.06 0.00 4.45
207 208 0.632835 ATTGATCACCATGGCAGGGT 59.367 50.000 19.74 19.74 39.88 4.34
208 209 0.034186 TTGATCACCATGGCAGGGTC 60.034 55.000 22.82 11.31 36.19 4.46
209 210 1.524621 GATCACCATGGCAGGGTCG 60.525 63.158 22.82 16.62 36.19 4.79
210 211 2.257409 GATCACCATGGCAGGGTCGT 62.257 60.000 22.82 12.91 36.19 4.34
211 212 1.852157 ATCACCATGGCAGGGTCGTT 61.852 55.000 22.82 9.38 36.19 3.85
212 213 1.603455 CACCATGGCAGGGTCGTTT 60.603 57.895 22.82 0.00 36.19 3.60
213 214 1.152830 ACCATGGCAGGGTCGTTTT 59.847 52.632 19.74 0.00 31.49 2.43
214 215 0.893727 ACCATGGCAGGGTCGTTTTC 60.894 55.000 19.74 0.00 31.49 2.29
215 216 0.609131 CCATGGCAGGGTCGTTTTCT 60.609 55.000 10.66 0.00 0.00 2.52
216 217 0.804989 CATGGCAGGGTCGTTTTCTC 59.195 55.000 0.00 0.00 0.00 2.87
217 218 0.693049 ATGGCAGGGTCGTTTTCTCT 59.307 50.000 0.00 0.00 0.00 3.10
218 219 0.472471 TGGCAGGGTCGTTTTCTCTT 59.528 50.000 0.00 0.00 0.00 2.85
219 220 1.133915 TGGCAGGGTCGTTTTCTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
220 221 1.954382 GGCAGGGTCGTTTTCTCTTTT 59.046 47.619 0.00 0.00 0.00 2.27
221 222 2.361119 GGCAGGGTCGTTTTCTCTTTTT 59.639 45.455 0.00 0.00 0.00 1.94
222 223 3.550233 GGCAGGGTCGTTTTCTCTTTTTC 60.550 47.826 0.00 0.00 0.00 2.29
223 224 3.550233 GCAGGGTCGTTTTCTCTTTTTCC 60.550 47.826 0.00 0.00 0.00 3.13
224 225 3.883489 CAGGGTCGTTTTCTCTTTTTCCT 59.117 43.478 0.00 0.00 0.00 3.36
225 226 4.338400 CAGGGTCGTTTTCTCTTTTTCCTT 59.662 41.667 0.00 0.00 0.00 3.36
226 227 4.954202 AGGGTCGTTTTCTCTTTTTCCTTT 59.046 37.500 0.00 0.00 0.00 3.11
227 228 5.421056 AGGGTCGTTTTCTCTTTTTCCTTTT 59.579 36.000 0.00 0.00 0.00 2.27
228 229 6.070995 AGGGTCGTTTTCTCTTTTTCCTTTTT 60.071 34.615 0.00 0.00 0.00 1.94
256 257 3.984838 TTTTTGGCTGTGTGCATCC 57.015 47.368 0.00 0.00 45.15 3.51
257 258 1.412079 TTTTTGGCTGTGTGCATCCT 58.588 45.000 0.00 0.00 45.15 3.24
258 259 0.675083 TTTTGGCTGTGTGCATCCTG 59.325 50.000 0.00 0.00 45.15 3.86
259 260 0.178995 TTTGGCTGTGTGCATCCTGA 60.179 50.000 0.00 0.00 45.15 3.86
260 261 0.178995 TTGGCTGTGTGCATCCTGAA 60.179 50.000 0.00 0.00 45.15 3.02
261 262 0.038599 TGGCTGTGTGCATCCTGAAT 59.961 50.000 0.00 0.00 45.15 2.57
262 263 0.454600 GGCTGTGTGCATCCTGAATG 59.545 55.000 0.00 0.00 45.15 2.67
263 264 1.171308 GCTGTGTGCATCCTGAATGT 58.829 50.000 0.00 0.00 42.31 2.71
264 265 1.542915 GCTGTGTGCATCCTGAATGTT 59.457 47.619 0.00 0.00 42.31 2.71
265 266 2.029649 GCTGTGTGCATCCTGAATGTTT 60.030 45.455 0.00 0.00 42.31 2.83
266 267 3.553508 GCTGTGTGCATCCTGAATGTTTT 60.554 43.478 0.00 0.00 42.31 2.43
267 268 4.624015 CTGTGTGCATCCTGAATGTTTTT 58.376 39.130 0.00 0.00 37.71 1.94
268 269 5.771469 CTGTGTGCATCCTGAATGTTTTTA 58.229 37.500 0.00 0.00 37.71 1.52
269 270 5.771469 TGTGTGCATCCTGAATGTTTTTAG 58.229 37.500 0.00 0.00 37.71 1.85
270 271 5.163513 GTGTGCATCCTGAATGTTTTTAGG 58.836 41.667 0.00 0.00 39.42 2.69
271 272 4.176271 GTGCATCCTGAATGTTTTTAGGC 58.824 43.478 0.00 0.00 38.26 3.93
272 273 3.831333 TGCATCCTGAATGTTTTTAGGCA 59.169 39.130 0.00 0.00 38.26 4.75
273 274 4.467082 TGCATCCTGAATGTTTTTAGGCAT 59.533 37.500 0.00 0.00 38.26 4.40
274 275 5.045872 GCATCCTGAATGTTTTTAGGCATC 58.954 41.667 0.00 0.00 38.26 3.91
275 276 5.163478 GCATCCTGAATGTTTTTAGGCATCT 60.163 40.000 0.00 0.00 38.26 2.90
276 277 6.628844 GCATCCTGAATGTTTTTAGGCATCTT 60.629 38.462 0.00 0.00 38.26 2.40
277 278 6.271488 TCCTGAATGTTTTTAGGCATCTTG 57.729 37.500 0.00 0.00 38.26 3.02
278 279 5.774690 TCCTGAATGTTTTTAGGCATCTTGT 59.225 36.000 0.00 0.00 38.26 3.16
279 280 6.267471 TCCTGAATGTTTTTAGGCATCTTGTT 59.733 34.615 0.00 0.00 38.26 2.83
280 281 6.366877 CCTGAATGTTTTTAGGCATCTTGTTG 59.633 38.462 0.00 0.00 32.45 3.33
281 282 6.222389 TGAATGTTTTTAGGCATCTTGTTGG 58.778 36.000 0.00 0.00 0.00 3.77
282 283 5.806654 ATGTTTTTAGGCATCTTGTTGGT 57.193 34.783 0.00 0.00 0.00 3.67
283 284 4.942852 TGTTTTTAGGCATCTTGTTGGTG 58.057 39.130 0.00 0.00 0.00 4.17
284 285 3.658757 TTTTAGGCATCTTGTTGGTGC 57.341 42.857 0.00 0.00 38.12 5.01
285 286 2.284754 TTAGGCATCTTGTTGGTGCA 57.715 45.000 3.30 0.00 40.53 4.57
286 287 2.284754 TAGGCATCTTGTTGGTGCAA 57.715 45.000 3.30 0.00 40.53 4.08
287 288 1.412079 AGGCATCTTGTTGGTGCAAA 58.588 45.000 3.30 0.00 40.53 3.68
288 289 1.342174 AGGCATCTTGTTGGTGCAAAG 59.658 47.619 3.30 0.00 40.53 2.77
289 290 1.606224 GGCATCTTGTTGGTGCAAAGG 60.606 52.381 3.30 0.00 40.53 3.11
290 291 1.787012 CATCTTGTTGGTGCAAAGGC 58.213 50.000 0.00 0.00 41.68 4.35
291 292 1.342174 CATCTTGTTGGTGCAAAGGCT 59.658 47.619 0.00 0.00 41.91 4.58
292 293 0.746063 TCTTGTTGGTGCAAAGGCTG 59.254 50.000 0.00 0.00 41.91 4.85
293 294 0.249573 CTTGTTGGTGCAAAGGCTGG 60.250 55.000 0.00 0.00 41.91 4.85
294 295 1.684386 TTGTTGGTGCAAAGGCTGGG 61.684 55.000 0.00 0.00 41.91 4.45
295 296 2.133641 GTTGGTGCAAAGGCTGGGT 61.134 57.895 0.00 0.00 41.91 4.51
296 297 2.132996 TTGGTGCAAAGGCTGGGTG 61.133 57.895 0.00 0.00 41.91 4.61
297 298 2.521708 GGTGCAAAGGCTGGGTGT 60.522 61.111 0.00 0.00 41.91 4.16
298 299 1.228429 GGTGCAAAGGCTGGGTGTA 60.228 57.895 0.00 0.00 41.91 2.90
299 300 0.825840 GGTGCAAAGGCTGGGTGTAA 60.826 55.000 0.00 0.00 41.91 2.41
300 301 1.256812 GTGCAAAGGCTGGGTGTAAT 58.743 50.000 0.00 0.00 41.91 1.89
301 302 1.618343 GTGCAAAGGCTGGGTGTAATT 59.382 47.619 0.00 0.00 41.91 1.40
302 303 1.617850 TGCAAAGGCTGGGTGTAATTG 59.382 47.619 0.00 0.00 41.91 2.32
303 304 1.066929 GCAAAGGCTGGGTGTAATTGG 60.067 52.381 0.00 0.00 36.96 3.16
304 305 2.247358 CAAAGGCTGGGTGTAATTGGT 58.753 47.619 0.00 0.00 0.00 3.67
305 306 3.426615 CAAAGGCTGGGTGTAATTGGTA 58.573 45.455 0.00 0.00 0.00 3.25
306 307 4.023291 CAAAGGCTGGGTGTAATTGGTAT 58.977 43.478 0.00 0.00 0.00 2.73
307 308 3.577805 AGGCTGGGTGTAATTGGTATC 57.422 47.619 0.00 0.00 0.00 2.24
308 309 3.123273 AGGCTGGGTGTAATTGGTATCT 58.877 45.455 0.00 0.00 0.00 1.98
309 310 4.303794 AGGCTGGGTGTAATTGGTATCTA 58.696 43.478 0.00 0.00 0.00 1.98
310 311 4.102681 AGGCTGGGTGTAATTGGTATCTAC 59.897 45.833 0.00 0.00 0.00 2.59
311 312 4.386711 GCTGGGTGTAATTGGTATCTACC 58.613 47.826 0.00 0.00 46.62 3.18
312 313 4.102681 GCTGGGTGTAATTGGTATCTACCT 59.897 45.833 7.84 0.00 46.58 3.08
313 314 5.611374 CTGGGTGTAATTGGTATCTACCTG 58.389 45.833 7.84 0.00 46.58 4.00
314 315 5.282129 TGGGTGTAATTGGTATCTACCTGA 58.718 41.667 7.84 0.00 46.58 3.86
315 316 5.727279 TGGGTGTAATTGGTATCTACCTGAA 59.273 40.000 7.84 0.00 46.58 3.02
316 317 6.215841 TGGGTGTAATTGGTATCTACCTGAAA 59.784 38.462 7.84 0.00 46.58 2.69
317 318 7.114095 GGGTGTAATTGGTATCTACCTGAAAA 58.886 38.462 7.84 0.00 46.58 2.29
343 344 4.927425 GGCGTAGACAAGAAGACAAATACA 59.073 41.667 0.00 0.00 31.66 2.29
378 380 4.752604 GGGCCAATTATTTTTGTTGTTCGT 59.247 37.500 4.39 0.00 0.00 3.85
379 381 5.107259 GGGCCAATTATTTTTGTTGTTCGTC 60.107 40.000 4.39 0.00 0.00 4.20
380 382 5.694458 GGCCAATTATTTTTGTTGTTCGTCT 59.306 36.000 0.00 0.00 0.00 4.18
389 391 6.639671 TTTTGTTGTTCGTCTGGATTTTTG 57.360 33.333 0.00 0.00 0.00 2.44
453 455 2.341257 ACAGATCCATCGCGAATATGC 58.659 47.619 15.24 2.89 0.00 3.14
454 456 1.662629 CAGATCCATCGCGAATATGCC 59.337 52.381 15.24 0.88 0.00 4.40
606 609 4.532126 TCTCATTTCAGTTTGCCTCTAGGA 59.468 41.667 0.00 0.00 37.39 2.94
629 632 0.472044 TAGGTCTTGCAGTGTGCCAA 59.528 50.000 0.00 0.00 44.23 4.52
661 664 1.078848 CCCTGTCCGCCTGAGAAAG 60.079 63.158 0.00 0.00 0.00 2.62
724 734 1.952296 CTGCTCACCAACAAGCTCTTT 59.048 47.619 0.00 0.00 39.31 2.52
793 803 3.315191 TGAAGCTTAGCACAAGAACCAAC 59.685 43.478 7.07 0.00 0.00 3.77
794 804 1.873591 AGCTTAGCACAAGAACCAACG 59.126 47.619 7.07 0.00 0.00 4.10
795 805 1.871039 GCTTAGCACAAGAACCAACGA 59.129 47.619 0.00 0.00 0.00 3.85
796 806 2.289547 GCTTAGCACAAGAACCAACGAA 59.710 45.455 0.00 0.00 0.00 3.85
801 811 3.130340 AGCACAAGAACCAACGAAACATT 59.870 39.130 0.00 0.00 0.00 2.71
821 831 0.605319 CTGCTCCAAAACCTACCGCA 60.605 55.000 0.00 0.00 0.00 5.69
822 832 0.887387 TGCTCCAAAACCTACCGCAC 60.887 55.000 0.00 0.00 0.00 5.34
823 833 0.887387 GCTCCAAAACCTACCGCACA 60.887 55.000 0.00 0.00 0.00 4.57
824 834 1.156736 CTCCAAAACCTACCGCACAG 58.843 55.000 0.00 0.00 0.00 3.66
826 836 1.141254 TCCAAAACCTACCGCACAGAA 59.859 47.619 0.00 0.00 0.00 3.02
828 838 2.556622 CCAAAACCTACCGCACAGAAAT 59.443 45.455 0.00 0.00 0.00 2.17
831 841 5.448632 CCAAAACCTACCGCACAGAAATATC 60.449 44.000 0.00 0.00 0.00 1.63
832 842 3.093717 ACCTACCGCACAGAAATATCG 57.906 47.619 0.00 0.00 0.00 2.92
833 843 1.792949 CCTACCGCACAGAAATATCGC 59.207 52.381 0.00 0.00 0.00 4.58
834 844 2.469826 CTACCGCACAGAAATATCGCA 58.530 47.619 0.00 0.00 0.00 5.10
835 845 1.006832 ACCGCACAGAAATATCGCAC 58.993 50.000 0.00 0.00 0.00 5.34
836 846 0.043053 CCGCACAGAAATATCGCACG 60.043 55.000 0.00 0.00 0.00 5.34
837 847 0.920664 CGCACAGAAATATCGCACGA 59.079 50.000 0.00 0.00 0.00 4.35
838 848 1.323235 CGCACAGAAATATCGCACGAA 59.677 47.619 0.00 0.00 0.00 3.85
839 849 2.694043 GCACAGAAATATCGCACGAAC 58.306 47.619 0.00 0.00 0.00 3.95
840 850 2.842069 GCACAGAAATATCGCACGAACG 60.842 50.000 0.00 0.00 0.00 3.95
858 868 5.910723 ACGAACGTAGCAAAATAAAAACCAG 59.089 36.000 0.00 0.00 0.00 4.00
859 869 5.341196 CGAACGTAGCAAAATAAAAACCAGG 59.659 40.000 0.00 0.00 0.00 4.45
868 878 6.576045 GCAAAATAAAAACCAGGGATCCATGA 60.576 38.462 27.62 6.83 0.00 3.07
872 882 2.077687 AACCAGGGATCCATGAATGC 57.922 50.000 27.62 0.40 0.00 3.56
877 887 3.069158 CCAGGGATCCATGAATGCTTTTC 59.931 47.826 27.62 0.00 0.00 2.29
878 888 2.954318 AGGGATCCATGAATGCTTTTCG 59.046 45.455 15.23 0.00 0.00 3.46
879 889 2.035066 GGGATCCATGAATGCTTTTCGG 59.965 50.000 15.23 0.00 0.00 4.30
881 891 3.243201 GGATCCATGAATGCTTTTCGGTC 60.243 47.826 6.95 0.00 0.00 4.79
905 915 6.578545 TCGTAACGTGTGAGTACATAAGAAAC 59.421 38.462 0.00 0.00 39.39 2.78
934 944 4.564372 CACCTATCACACAGAACAATCTCG 59.436 45.833 0.00 0.00 32.03 4.04
956 966 2.918934 TCCATCTCCCAATCCTGACAAA 59.081 45.455 0.00 0.00 0.00 2.83
987 997 2.421619 CTTCCTGAGAAGTTCTGGCAC 58.578 52.381 10.90 0.00 43.90 5.01
988 998 1.722034 TCCTGAGAAGTTCTGGCACT 58.278 50.000 10.90 0.00 42.87 4.40
989 999 1.345741 TCCTGAGAAGTTCTGGCACTG 59.654 52.381 10.90 0.00 42.87 3.66
990 1000 1.610102 CCTGAGAAGTTCTGGCACTGG 60.610 57.143 10.90 5.55 37.98 4.00
991 1001 0.250467 TGAGAAGTTCTGGCACTGGC 60.250 55.000 10.90 0.00 40.13 4.85
992 1002 0.250467 GAGAAGTTCTGGCACTGGCA 60.250 55.000 10.90 5.02 43.71 4.92
1023 1038 3.906649 GCTGCATCGTCTCGTGCG 61.907 66.667 0.00 0.00 44.11 5.34
1552 1576 1.301401 GACACGTGCCAGCAAGGTA 60.301 57.895 17.22 0.00 40.61 3.08
1557 1581 1.581447 GTGCCAGCAAGGTAAGCAC 59.419 57.895 9.75 9.75 45.99 4.40
1558 1582 1.455849 TGCCAGCAAGGTAAGCACT 59.544 52.632 0.00 0.00 40.61 4.40
1559 1583 0.690192 TGCCAGCAAGGTAAGCACTA 59.310 50.000 0.00 0.00 40.61 2.74
1560 1584 1.073125 TGCCAGCAAGGTAAGCACTAA 59.927 47.619 0.00 0.00 40.61 2.24
1561 1585 1.740025 GCCAGCAAGGTAAGCACTAAG 59.260 52.381 0.00 0.00 40.61 2.18
1562 1586 1.740025 CCAGCAAGGTAAGCACTAAGC 59.260 52.381 0.00 0.00 46.19 3.09
1611 1638 1.304509 GGGTTGCTCTGCTCTGCTTC 61.305 60.000 0.00 0.00 0.00 3.86
1612 1639 1.304509 GGTTGCTCTGCTCTGCTTCC 61.305 60.000 0.00 0.00 0.00 3.46
1613 1640 0.321475 GTTGCTCTGCTCTGCTTCCT 60.321 55.000 0.00 0.00 0.00 3.36
1614 1641 0.399454 TTGCTCTGCTCTGCTTCCTT 59.601 50.000 0.00 0.00 0.00 3.36
1617 1644 1.742071 GCTCTGCTCTGCTTCCTTACC 60.742 57.143 0.00 0.00 0.00 2.85
1624 1651 0.107459 CTGCTTCCTTACCCCTGCTC 60.107 60.000 0.00 0.00 0.00 4.26
1627 1654 0.107459 CTTCCTTACCCCTGCTCTGC 60.107 60.000 0.00 0.00 0.00 4.26
1633 1660 2.746947 TACCCCTGCTCTGCCACTCA 62.747 60.000 0.00 0.00 0.00 3.41
1737 1764 4.704057 GCATTCTTTCAGAAGAGGTCCATT 59.296 41.667 0.00 0.00 42.55 3.16
1819 1846 1.063469 GCGGCAGCGCTTAGATTTTAA 59.937 47.619 7.50 0.00 0.00 1.52
1820 1847 2.851008 GCGGCAGCGCTTAGATTTTAAG 60.851 50.000 7.50 0.00 0.00 1.85
1821 1848 2.607635 CGGCAGCGCTTAGATTTTAAGA 59.392 45.455 7.50 0.00 0.00 2.10
1822 1849 3.302740 CGGCAGCGCTTAGATTTTAAGAG 60.303 47.826 7.50 0.00 0.00 2.85
1823 1850 3.871594 GGCAGCGCTTAGATTTTAAGAGA 59.128 43.478 7.50 0.00 0.00 3.10
1824 1851 4.025313 GGCAGCGCTTAGATTTTAAGAGAG 60.025 45.833 7.50 0.00 0.00 3.20
1825 1852 4.568760 GCAGCGCTTAGATTTTAAGAGAGT 59.431 41.667 7.50 0.00 0.00 3.24
1826 1853 5.064071 GCAGCGCTTAGATTTTAAGAGAGTT 59.936 40.000 7.50 0.00 0.00 3.01
1827 1854 6.700978 CAGCGCTTAGATTTTAAGAGAGTTC 58.299 40.000 7.50 0.00 0.00 3.01
1828 1855 5.517054 AGCGCTTAGATTTTAAGAGAGTTCG 59.483 40.000 2.64 0.00 0.00 3.95
1829 1856 5.288952 GCGCTTAGATTTTAAGAGAGTTCGT 59.711 40.000 0.00 0.00 0.00 3.85
1830 1857 6.183360 GCGCTTAGATTTTAAGAGAGTTCGTT 60.183 38.462 0.00 0.00 0.00 3.85
1831 1858 7.167481 CGCTTAGATTTTAAGAGAGTTCGTTG 58.833 38.462 0.00 0.00 0.00 4.10
1832 1859 7.061905 CGCTTAGATTTTAAGAGAGTTCGTTGA 59.938 37.037 0.00 0.00 0.00 3.18
1833 1860 8.376942 GCTTAGATTTTAAGAGAGTTCGTTGAG 58.623 37.037 0.00 0.00 0.00 3.02
1834 1861 6.713792 AGATTTTAAGAGAGTTCGTTGAGC 57.286 37.500 0.00 0.00 0.00 4.26
1836 1863 5.907197 TTTTAAGAGAGTTCGTTGAGCAG 57.093 39.130 0.00 0.00 0.00 4.24
1838 1865 2.715737 AGAGAGTTCGTTGAGCAGAC 57.284 50.000 0.00 0.00 0.00 3.51
1839 1866 1.271102 AGAGAGTTCGTTGAGCAGACC 59.729 52.381 0.00 0.00 0.00 3.85
1840 1867 0.318762 AGAGTTCGTTGAGCAGACCC 59.681 55.000 0.00 0.00 0.00 4.46
1843 1870 0.586802 GTTCGTTGAGCAGACCCAAC 59.413 55.000 0.00 0.00 39.26 3.77
1844 1871 0.179234 TTCGTTGAGCAGACCCAACA 59.821 50.000 0.00 0.00 41.85 3.33
1845 1872 0.531974 TCGTTGAGCAGACCCAACAC 60.532 55.000 0.00 0.00 41.85 3.32
1846 1873 1.507141 CGTTGAGCAGACCCAACACC 61.507 60.000 0.00 0.00 41.85 4.16
1847 1874 1.150536 TTGAGCAGACCCAACACCC 59.849 57.895 0.00 0.00 0.00 4.61
1851 1878 1.201429 AGCAGACCCAACACCCTAGG 61.201 60.000 0.06 0.06 0.00 3.02
1852 1879 1.198759 GCAGACCCAACACCCTAGGA 61.199 60.000 11.48 0.00 0.00 2.94
1853 1880 1.358152 CAGACCCAACACCCTAGGAA 58.642 55.000 11.48 0.00 0.00 3.36
1855 1882 1.985895 AGACCCAACACCCTAGGAAAG 59.014 52.381 11.48 1.62 0.00 2.62
1856 1883 1.004394 GACCCAACACCCTAGGAAAGG 59.996 57.143 11.48 4.57 46.09 3.11
1857 1884 1.073098 CCCAACACCCTAGGAAAGGT 58.927 55.000 11.48 0.00 44.90 3.50
1866 1893 5.853572 ACCCTAGGAAAGGTGAATTAACA 57.146 39.130 11.48 0.00 44.90 2.41
1878 1939 9.840427 AAAGGTGAATTAACAACTAATCAATCG 57.160 29.630 0.00 0.00 36.77 3.34
1889 1950 8.508800 ACAACTAATCAATCGATCGATCTAAC 57.491 34.615 29.48 0.00 33.08 2.34
1922 1987 5.357596 GGGCATTTGCATTTCATTGGTTATT 59.642 36.000 4.74 0.00 44.36 1.40
1934 1999 8.519799 TTTCATTGGTTATTAATCAGGAGGTC 57.480 34.615 0.00 0.00 0.00 3.85
2221 2286 7.266400 GTCCTAGGTAATCGATCAAAGTTCTT 58.734 38.462 9.08 0.00 0.00 2.52
2236 2301 2.297597 AGTTCTTCCAAGACGTCAGGAG 59.702 50.000 23.31 18.44 34.13 3.69
2291 2361 2.431260 GCATGCCGCCTTGTGTTG 60.431 61.111 6.36 0.00 32.94 3.33
2292 2362 3.041701 CATGCCGCCTTGTGTTGT 58.958 55.556 0.00 0.00 0.00 3.32
2293 2363 1.081242 CATGCCGCCTTGTGTTGTC 60.081 57.895 0.00 0.00 0.00 3.18
2325 2396 4.500116 GACGAGGGGTCGCTGCTC 62.500 72.222 0.00 0.00 35.61 4.26
2484 2555 2.107750 ATGGCGCTGTCGATCCTG 59.892 61.111 7.64 0.00 38.10 3.86
2573 2651 4.828341 CGCGCGCGTTGTTCTAGC 62.828 66.667 42.49 10.01 34.35 3.42
2575 2653 2.093983 CGCGCGTTGTTCTAGCAC 59.906 61.111 24.19 0.00 0.00 4.40
2576 2654 2.653967 CGCGCGTTGTTCTAGCACA 61.654 57.895 24.19 0.00 0.00 4.57
2577 2655 1.130613 GCGCGTTGTTCTAGCACAG 59.869 57.895 8.43 0.00 0.00 3.66
2594 2679 2.052060 GCTAGTCTAGCGCCGTCG 60.052 66.667 15.95 0.00 42.62 5.12
2617 2702 4.699522 GGGTTGCCTTCGCTCGGT 62.700 66.667 0.00 0.00 35.36 4.69
2623 2708 2.903547 GCCTTCGCTCGGTTTTGCA 61.904 57.895 0.00 0.00 0.00 4.08
2656 2741 5.276270 CAAATATCAGCTCCAATTTCGGTG 58.724 41.667 0.00 0.00 0.00 4.94
2664 2757 4.099419 AGCTCCAATTTCGGTGTTTTCTTT 59.901 37.500 0.00 0.00 0.00 2.52
2666 2759 5.980715 GCTCCAATTTCGGTGTTTTCTTTTA 59.019 36.000 0.00 0.00 0.00 1.52
2688 2781 0.036105 ACACAATCTCGCAGCATCCA 60.036 50.000 0.00 0.00 0.00 3.41
2690 2783 2.158914 ACACAATCTCGCAGCATCCATA 60.159 45.455 0.00 0.00 0.00 2.74
2726 2821 7.841729 TCCTTGAAAATAGGGCCATGTAATTTA 59.158 33.333 6.18 0.00 33.41 1.40
2728 2823 9.696917 CTTGAAAATAGGGCCATGTAATTTATC 57.303 33.333 6.18 2.86 0.00 1.75
2737 2832 5.922544 GGCCATGTAATTTATCATTCACAGC 59.077 40.000 0.00 0.00 0.00 4.40
2814 2909 9.146984 TCTTAATTTATAGTTCACAGTGTTCCG 57.853 33.333 0.00 0.00 0.00 4.30
2815 2910 6.737254 AATTTATAGTTCACAGTGTTCCGG 57.263 37.500 0.00 0.00 0.00 5.14
2816 2911 5.471556 TTTATAGTTCACAGTGTTCCGGA 57.528 39.130 0.00 0.00 0.00 5.14
2817 2912 5.670792 TTATAGTTCACAGTGTTCCGGAT 57.329 39.130 4.15 0.00 0.00 4.18
2818 2913 2.169832 AGTTCACAGTGTTCCGGATG 57.830 50.000 4.15 2.35 0.00 3.51
2819 2914 1.416401 AGTTCACAGTGTTCCGGATGT 59.584 47.619 4.15 3.16 0.00 3.06
2820 2915 2.631062 AGTTCACAGTGTTCCGGATGTA 59.369 45.455 4.15 0.00 0.00 2.29
2821 2916 2.735134 GTTCACAGTGTTCCGGATGTAC 59.265 50.000 4.15 0.13 0.00 2.90
2822 2917 1.964933 TCACAGTGTTCCGGATGTACA 59.035 47.619 4.15 3.62 0.00 2.90
2823 2918 2.565391 TCACAGTGTTCCGGATGTACAT 59.435 45.455 8.43 8.43 0.00 2.29
2827 2922 4.825085 ACAGTGTTCCGGATGTACATTTTT 59.175 37.500 10.30 0.00 0.00 1.94
2846 2941 1.743321 TTGGCAAACCCGAGGCAAAG 61.743 55.000 0.00 0.00 45.59 2.77
2848 2943 1.007387 GCAAACCCGAGGCAAAGTG 60.007 57.895 0.00 0.00 0.00 3.16
2854 2949 1.101049 CCCGAGGCAAAGTGTGTGTT 61.101 55.000 0.00 0.00 0.00 3.32
2855 2950 0.029300 CCGAGGCAAAGTGTGTGTTG 59.971 55.000 0.00 0.00 0.00 3.33
2861 2956 1.181786 CAAAGTGTGTGTTGGTGGGT 58.818 50.000 0.00 0.00 0.00 4.51
2865 2960 2.277404 GTGTGTTGGTGGGTGGGT 59.723 61.111 0.00 0.00 0.00 4.51
2869 2967 3.503839 GTTGGTGGGTGGGTGGGA 61.504 66.667 0.00 0.00 0.00 4.37
2920 3018 1.203025 ACGTAGGACTCCAACACCTCT 60.203 52.381 0.00 0.00 35.52 3.69
2987 3087 5.772169 CCATTTTCTCTCCTTCAGTTTCCTT 59.228 40.000 0.00 0.00 0.00 3.36
2990 3090 4.625607 TCTCTCCTTCAGTTTCCTTTCC 57.374 45.455 0.00 0.00 0.00 3.13
2993 3093 3.716872 TCTCCTTCAGTTTCCTTTCCTGT 59.283 43.478 0.00 0.00 0.00 4.00
3066 3169 1.661617 CGACGAGTCTGTCACCTCTAG 59.338 57.143 13.13 0.00 38.84 2.43
3088 3191 1.000019 TACACCTAGGCTCCACGCT 60.000 57.895 9.30 0.00 39.13 5.07
3093 3196 0.103208 CCTAGGCTCCACGCTACTTG 59.897 60.000 0.00 0.00 39.13 3.16
3097 3200 1.292223 GCTCCACGCTACTTGTCCA 59.708 57.895 0.00 0.00 35.14 4.02
3162 3270 0.964700 TCCGCTCCTATGATGCTCAG 59.035 55.000 0.00 0.00 0.00 3.35
3174 3282 3.200593 GCTCAGCATGCCCGACAG 61.201 66.667 15.66 4.36 34.76 3.51
3247 3358 5.190528 AGCAATGGATTCGGATATGGAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
3250 3361 7.386299 GCAATGGATTCGGATATGGAGTATATC 59.614 40.741 0.00 0.00 44.59 1.63
3323 3440 0.460811 TGAGACGGTGATGATGCAGC 60.461 55.000 0.00 0.00 0.00 5.25
3329 3446 1.450134 GTGATGATGCAGCCGGTGA 60.450 57.895 1.90 0.00 0.00 4.02
3392 3510 4.017222 TCAAGGGATCAATCAAGGGTCATT 60.017 41.667 0.00 0.00 0.00 2.57
3395 3513 4.017222 AGGGATCAATCAAGGGTCATTGAA 60.017 41.667 2.19 0.00 42.21 2.69
3407 3525 0.447406 TCATTGAATGCTCAACCGCG 59.553 50.000 0.00 0.00 44.28 6.46
3459 3579 0.252197 GACTACTTTGCCCCCGATGT 59.748 55.000 0.00 0.00 0.00 3.06
3483 3603 2.360483 TCTTCGCTGACAATTTTTGCCA 59.640 40.909 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.336433 ACAATGACTTCAACAAGGTCACTG 59.664 41.667 0.00 0.00 33.37 3.66
7 8 5.659463 TCCAAAACAATGACTTCAACAAGG 58.341 37.500 0.00 0.00 33.37 3.61
8 9 7.117523 TGTTTCCAAAACAATGACTTCAACAAG 59.882 33.333 2.90 0.00 35.50 3.16
9 10 6.931281 TGTTTCCAAAACAATGACTTCAACAA 59.069 30.769 2.90 0.00 0.00 2.83
10 11 6.367422 GTGTTTCCAAAACAATGACTTCAACA 59.633 34.615 6.81 0.00 31.20 3.33
12 13 5.574830 CGTGTTTCCAAAACAATGACTTCAA 59.425 36.000 6.81 0.00 31.20 2.69
13 14 5.098893 CGTGTTTCCAAAACAATGACTTCA 58.901 37.500 6.81 0.00 31.20 3.02
15 16 5.066968 ACGTGTTTCCAAAACAATGACTT 57.933 34.783 6.81 0.00 31.20 3.01
16 17 4.712122 ACGTGTTTCCAAAACAATGACT 57.288 36.364 6.81 0.00 31.20 3.41
17 18 5.099575 AGAACGTGTTTCCAAAACAATGAC 58.900 37.500 6.81 1.42 34.32 3.06
18 19 5.317733 AGAACGTGTTTCCAAAACAATGA 57.682 34.783 6.81 0.00 34.32 2.57
19 20 6.310224 AGAAAGAACGTGTTTCCAAAACAATG 59.690 34.615 16.28 5.86 34.93 2.82
20 21 6.394809 AGAAAGAACGTGTTTCCAAAACAAT 58.605 32.000 16.28 0.00 34.93 2.71
21 22 5.774630 AGAAAGAACGTGTTTCCAAAACAA 58.225 33.333 16.28 0.00 34.93 2.83
22 23 5.379732 AGAAAGAACGTGTTTCCAAAACA 57.620 34.783 16.28 1.27 34.93 2.83
23 24 5.859648 TGAAGAAAGAACGTGTTTCCAAAAC 59.140 36.000 16.28 0.00 34.93 2.43
24 25 6.015027 TGAAGAAAGAACGTGTTTCCAAAA 57.985 33.333 16.28 2.56 34.93 2.44
25 26 5.392595 CCTGAAGAAAGAACGTGTTTCCAAA 60.393 40.000 16.28 5.37 34.93 3.28
26 27 4.095782 CCTGAAGAAAGAACGTGTTTCCAA 59.904 41.667 16.28 5.63 34.93 3.53
27 28 3.625764 CCTGAAGAAAGAACGTGTTTCCA 59.374 43.478 16.28 9.73 34.93 3.53
28 29 3.003378 CCCTGAAGAAAGAACGTGTTTCC 59.997 47.826 16.28 6.53 34.93 3.13
29 30 3.626217 ACCCTGAAGAAAGAACGTGTTTC 59.374 43.478 13.35 13.35 34.64 2.78
30 31 3.377172 CACCCTGAAGAAAGAACGTGTTT 59.623 43.478 0.00 0.00 0.00 2.83
31 32 2.943033 CACCCTGAAGAAAGAACGTGTT 59.057 45.455 0.00 0.00 0.00 3.32
32 33 2.169769 TCACCCTGAAGAAAGAACGTGT 59.830 45.455 0.00 0.00 0.00 4.49
33 34 2.833794 TCACCCTGAAGAAAGAACGTG 58.166 47.619 0.00 0.00 0.00 4.49
34 35 3.553828 TTCACCCTGAAGAAAGAACGT 57.446 42.857 0.00 0.00 31.83 3.99
35 36 4.335594 AGTTTTCACCCTGAAGAAAGAACG 59.664 41.667 0.00 0.00 37.70 3.95
36 37 5.836821 AGTTTTCACCCTGAAGAAAGAAC 57.163 39.130 0.00 0.00 37.70 3.01
37 38 6.037830 CGTAAGTTTTCACCCTGAAGAAAGAA 59.962 38.462 0.00 0.00 37.70 2.52
38 39 5.526111 CGTAAGTTTTCACCCTGAAGAAAGA 59.474 40.000 0.00 0.00 37.70 2.52
39 40 5.526111 TCGTAAGTTTTCACCCTGAAGAAAG 59.474 40.000 0.00 0.00 36.72 2.62
40 41 5.430007 TCGTAAGTTTTCACCCTGAAGAAA 58.570 37.500 0.00 0.00 36.72 2.52
41 42 5.026038 TCGTAAGTTTTCACCCTGAAGAA 57.974 39.130 0.00 0.00 36.72 2.52
42 43 4.675976 TCGTAAGTTTTCACCCTGAAGA 57.324 40.909 0.00 0.00 36.72 2.87
43 44 5.238583 AGATCGTAAGTTTTCACCCTGAAG 58.761 41.667 0.00 0.00 36.72 3.02
44 45 5.223449 AGATCGTAAGTTTTCACCCTGAA 57.777 39.130 0.00 0.00 34.52 3.02
45 46 4.884668 AGATCGTAAGTTTTCACCCTGA 57.115 40.909 0.00 0.00 39.48 3.86
46 47 5.468746 TCAAAGATCGTAAGTTTTCACCCTG 59.531 40.000 0.00 0.00 39.48 4.45
47 48 5.617252 TCAAAGATCGTAAGTTTTCACCCT 58.383 37.500 0.00 0.00 39.48 4.34
48 49 5.934935 TCAAAGATCGTAAGTTTTCACCC 57.065 39.130 0.00 0.00 39.48 4.61
49 50 7.129109 TGATCAAAGATCGTAAGTTTTCACC 57.871 36.000 0.00 0.00 39.48 4.02
50 51 7.237173 CCTGATCAAAGATCGTAAGTTTTCAC 58.763 38.462 0.00 0.00 39.48 3.18
51 52 6.128282 GCCTGATCAAAGATCGTAAGTTTTCA 60.128 38.462 0.00 0.00 39.48 2.69
52 53 6.128282 TGCCTGATCAAAGATCGTAAGTTTTC 60.128 38.462 0.00 0.00 39.48 2.29
53 54 5.705441 TGCCTGATCAAAGATCGTAAGTTTT 59.295 36.000 0.00 0.00 39.48 2.43
54 55 5.245531 TGCCTGATCAAAGATCGTAAGTTT 58.754 37.500 0.00 0.00 39.48 2.66
55 56 4.832248 TGCCTGATCAAAGATCGTAAGTT 58.168 39.130 0.00 0.00 39.48 2.66
56 57 4.471904 TGCCTGATCAAAGATCGTAAGT 57.528 40.909 0.00 0.00 39.48 2.24
57 58 4.259970 CGTTGCCTGATCAAAGATCGTAAG 60.260 45.833 0.00 0.00 0.00 2.34
58 59 3.616821 CGTTGCCTGATCAAAGATCGTAA 59.383 43.478 0.00 0.00 0.00 3.18
59 60 3.119280 TCGTTGCCTGATCAAAGATCGTA 60.119 43.478 0.00 0.00 31.38 3.43
60 61 2.002586 CGTTGCCTGATCAAAGATCGT 58.997 47.619 0.00 0.00 0.00 3.73
61 62 2.029728 GTCGTTGCCTGATCAAAGATCG 59.970 50.000 0.00 0.09 36.96 3.69
62 63 3.002791 TGTCGTTGCCTGATCAAAGATC 58.997 45.455 0.00 0.15 36.96 2.75
63 64 3.057969 TGTCGTTGCCTGATCAAAGAT 57.942 42.857 0.00 0.00 36.96 2.40
64 65 2.542020 TGTCGTTGCCTGATCAAAGA 57.458 45.000 0.00 0.00 33.32 2.52
65 66 2.662791 CGTTGTCGTTGCCTGATCAAAG 60.663 50.000 0.00 0.00 0.00 2.77
66 67 1.262950 CGTTGTCGTTGCCTGATCAAA 59.737 47.619 0.00 0.00 0.00 2.69
67 68 0.865111 CGTTGTCGTTGCCTGATCAA 59.135 50.000 0.00 0.00 0.00 2.57
68 69 1.565156 GCGTTGTCGTTGCCTGATCA 61.565 55.000 0.00 0.00 39.49 2.92
69 70 1.132640 GCGTTGTCGTTGCCTGATC 59.867 57.895 0.00 0.00 39.49 2.92
70 71 0.884704 AAGCGTTGTCGTTGCCTGAT 60.885 50.000 0.00 0.00 39.49 2.90
71 72 1.522806 AAGCGTTGTCGTTGCCTGA 60.523 52.632 0.00 0.00 39.49 3.86
72 73 1.369209 CAAGCGTTGTCGTTGCCTG 60.369 57.895 0.00 0.00 39.49 4.85
73 74 1.817941 ACAAGCGTTGTCGTTGCCT 60.818 52.632 0.00 0.00 40.56 4.75
74 75 1.654137 CACAAGCGTTGTCGTTGCC 60.654 57.895 1.17 0.00 43.23 4.52
75 76 2.285857 GCACAAGCGTTGTCGTTGC 61.286 57.895 1.17 0.00 43.23 4.17
76 77 3.888221 GCACAAGCGTTGTCGTTG 58.112 55.556 1.17 0.00 43.23 4.10
100 101 1.302511 GCAACGCCTCCAAGAAGGA 60.303 57.895 0.00 0.00 46.75 3.36
101 102 0.890996 AAGCAACGCCTCCAAGAAGG 60.891 55.000 0.00 0.00 39.62 3.46
102 103 0.954452 AAAGCAACGCCTCCAAGAAG 59.046 50.000 0.00 0.00 0.00 2.85
103 104 1.066908 CAAAAGCAACGCCTCCAAGAA 59.933 47.619 0.00 0.00 0.00 2.52
104 105 0.667993 CAAAAGCAACGCCTCCAAGA 59.332 50.000 0.00 0.00 0.00 3.02
105 106 0.667993 TCAAAAGCAACGCCTCCAAG 59.332 50.000 0.00 0.00 0.00 3.61
106 107 1.066908 CTTCAAAAGCAACGCCTCCAA 59.933 47.619 0.00 0.00 0.00 3.53
107 108 0.667993 CTTCAAAAGCAACGCCTCCA 59.332 50.000 0.00 0.00 0.00 3.86
108 109 0.951558 TCTTCAAAAGCAACGCCTCC 59.048 50.000 0.00 0.00 0.00 4.30
109 110 2.385315 GTTCTTCAAAAGCAACGCCTC 58.615 47.619 0.00 0.00 0.00 4.70
110 111 1.067060 GGTTCTTCAAAAGCAACGCCT 59.933 47.619 0.00 0.00 0.00 5.52
111 112 1.067060 AGGTTCTTCAAAAGCAACGCC 59.933 47.619 0.00 0.00 0.00 5.68
112 113 2.492019 AGGTTCTTCAAAAGCAACGC 57.508 45.000 0.00 0.00 0.00 4.84
113 114 4.292977 AGAAGGTTCTTCAAAAGCAACG 57.707 40.909 9.87 0.00 32.55 4.10
114 115 6.333416 AGAAAGAAGGTTCTTCAAAAGCAAC 58.667 36.000 5.45 0.00 46.22 4.17
115 116 6.530019 AGAAAGAAGGTTCTTCAAAAGCAA 57.470 33.333 5.45 0.00 46.22 3.91
116 117 6.828785 ACTAGAAAGAAGGTTCTTCAAAAGCA 59.171 34.615 5.45 0.00 46.22 3.91
117 118 7.265647 ACTAGAAAGAAGGTTCTTCAAAAGC 57.734 36.000 5.45 0.00 46.22 3.51
118 119 7.307455 CGGACTAGAAAGAAGGTTCTTCAAAAG 60.307 40.741 5.45 4.59 46.22 2.27
119 120 6.482308 CGGACTAGAAAGAAGGTTCTTCAAAA 59.518 38.462 5.45 0.00 46.22 2.44
120 121 5.989777 CGGACTAGAAAGAAGGTTCTTCAAA 59.010 40.000 5.45 0.00 46.22 2.69
121 122 5.510861 CCGGACTAGAAAGAAGGTTCTTCAA 60.511 44.000 0.00 0.00 46.22 2.69
122 123 4.021368 CCGGACTAGAAAGAAGGTTCTTCA 60.021 45.833 0.00 0.00 46.22 3.02
123 124 4.496360 CCGGACTAGAAAGAAGGTTCTTC 58.504 47.826 0.00 0.00 46.22 2.87
125 126 2.832733 CCCGGACTAGAAAGAAGGTTCT 59.167 50.000 0.73 0.00 40.89 3.01
126 127 2.566279 ACCCGGACTAGAAAGAAGGTTC 59.434 50.000 0.73 0.00 0.00 3.62
127 128 2.302157 CACCCGGACTAGAAAGAAGGTT 59.698 50.000 0.73 0.00 0.00 3.50
128 129 1.900486 CACCCGGACTAGAAAGAAGGT 59.100 52.381 0.73 0.00 0.00 3.50
129 130 1.900486 ACACCCGGACTAGAAAGAAGG 59.100 52.381 0.73 0.00 0.00 3.46
130 131 3.244112 ACAACACCCGGACTAGAAAGAAG 60.244 47.826 0.73 0.00 0.00 2.85
131 132 2.701951 ACAACACCCGGACTAGAAAGAA 59.298 45.455 0.73 0.00 0.00 2.52
132 133 2.298163 GACAACACCCGGACTAGAAAGA 59.702 50.000 0.73 0.00 0.00 2.52
133 134 2.299297 AGACAACACCCGGACTAGAAAG 59.701 50.000 0.73 0.00 0.00 2.62
134 135 2.322658 AGACAACACCCGGACTAGAAA 58.677 47.619 0.73 0.00 0.00 2.52
135 136 2.005370 AGACAACACCCGGACTAGAA 57.995 50.000 0.73 0.00 0.00 2.10
136 137 2.005370 AAGACAACACCCGGACTAGA 57.995 50.000 0.73 0.00 0.00 2.43
137 138 2.413837 CAAAGACAACACCCGGACTAG 58.586 52.381 0.73 0.00 0.00 2.57
138 139 1.071071 CCAAAGACAACACCCGGACTA 59.929 52.381 0.73 0.00 0.00 2.59
139 140 0.179029 CCAAAGACAACACCCGGACT 60.179 55.000 0.73 0.00 0.00 3.85
140 141 0.464916 ACCAAAGACAACACCCGGAC 60.465 55.000 0.73 0.00 0.00 4.79
141 142 0.464735 CACCAAAGACAACACCCGGA 60.465 55.000 0.73 0.00 0.00 5.14
142 143 1.452145 CCACCAAAGACAACACCCGG 61.452 60.000 0.00 0.00 0.00 5.73
143 144 0.750182 ACCACCAAAGACAACACCCG 60.750 55.000 0.00 0.00 0.00 5.28
144 145 1.136110 CAACCACCAAAGACAACACCC 59.864 52.381 0.00 0.00 0.00 4.61
145 146 1.822371 ACAACCACCAAAGACAACACC 59.178 47.619 0.00 0.00 0.00 4.16
146 147 3.586100 AACAACCACCAAAGACAACAC 57.414 42.857 0.00 0.00 0.00 3.32
147 148 4.590918 TCTAACAACCACCAAAGACAACA 58.409 39.130 0.00 0.00 0.00 3.33
148 149 4.638865 ACTCTAACAACCACCAAAGACAAC 59.361 41.667 0.00 0.00 0.00 3.32
149 150 4.638421 CACTCTAACAACCACCAAAGACAA 59.362 41.667 0.00 0.00 0.00 3.18
150 151 4.196193 CACTCTAACAACCACCAAAGACA 58.804 43.478 0.00 0.00 0.00 3.41
151 152 3.003378 GCACTCTAACAACCACCAAAGAC 59.997 47.826 0.00 0.00 0.00 3.01
152 153 3.118038 AGCACTCTAACAACCACCAAAGA 60.118 43.478 0.00 0.00 0.00 2.52
153 154 3.003689 CAGCACTCTAACAACCACCAAAG 59.996 47.826 0.00 0.00 0.00 2.77
154 155 2.948979 CAGCACTCTAACAACCACCAAA 59.051 45.455 0.00 0.00 0.00 3.28
155 156 2.571212 CAGCACTCTAACAACCACCAA 58.429 47.619 0.00 0.00 0.00 3.67
156 157 1.813862 GCAGCACTCTAACAACCACCA 60.814 52.381 0.00 0.00 0.00 4.17
157 158 0.875059 GCAGCACTCTAACAACCACC 59.125 55.000 0.00 0.00 0.00 4.61
158 159 1.884235 AGCAGCACTCTAACAACCAC 58.116 50.000 0.00 0.00 0.00 4.16
159 160 2.632996 AGTAGCAGCACTCTAACAACCA 59.367 45.455 0.00 0.00 0.00 3.67
160 161 2.996621 CAGTAGCAGCACTCTAACAACC 59.003 50.000 0.00 0.00 0.00 3.77
161 162 2.413453 GCAGTAGCAGCACTCTAACAAC 59.587 50.000 0.00 0.00 41.58 3.32
162 163 2.688507 GCAGTAGCAGCACTCTAACAA 58.311 47.619 0.00 0.00 41.58 2.83
163 164 1.402852 CGCAGTAGCAGCACTCTAACA 60.403 52.381 0.00 0.00 42.27 2.41
164 165 1.272781 CGCAGTAGCAGCACTCTAAC 58.727 55.000 0.00 0.00 42.27 2.34
165 166 0.173481 CCGCAGTAGCAGCACTCTAA 59.827 55.000 0.00 0.00 42.27 2.10
166 167 1.667154 CCCGCAGTAGCAGCACTCTA 61.667 60.000 0.00 0.00 42.27 2.43
167 168 2.575993 CCGCAGTAGCAGCACTCT 59.424 61.111 0.00 0.00 42.27 3.24
168 169 2.510238 CCCGCAGTAGCAGCACTC 60.510 66.667 0.00 0.00 42.27 3.51
169 170 3.314331 ACCCGCAGTAGCAGCACT 61.314 61.111 0.00 0.00 42.27 4.40
170 171 2.859273 ATCACCCGCAGTAGCAGCAC 62.859 60.000 0.00 0.00 42.27 4.40
171 172 2.184020 AATCACCCGCAGTAGCAGCA 62.184 55.000 0.00 0.00 42.27 4.41
172 173 1.450312 AATCACCCGCAGTAGCAGC 60.450 57.895 0.00 0.00 42.27 5.25
173 174 0.108186 TCAATCACCCGCAGTAGCAG 60.108 55.000 0.00 0.00 42.27 4.24
174 175 0.541392 ATCAATCACCCGCAGTAGCA 59.459 50.000 0.00 0.00 42.27 3.49
175 176 1.221414 GATCAATCACCCGCAGTAGC 58.779 55.000 0.00 0.00 37.42 3.58
176 177 2.602257 TGATCAATCACCCGCAGTAG 57.398 50.000 0.00 0.00 0.00 2.57
186 187 1.410507 CCCTGCCATGGTGATCAATCA 60.411 52.381 14.67 0.00 0.00 2.57
187 188 1.325355 CCCTGCCATGGTGATCAATC 58.675 55.000 14.67 0.00 0.00 2.67
188 189 0.632835 ACCCTGCCATGGTGATCAAT 59.367 50.000 14.67 0.00 33.94 2.57
189 190 0.034186 GACCCTGCCATGGTGATCAA 60.034 55.000 14.67 0.00 35.85 2.57
190 191 1.609239 GACCCTGCCATGGTGATCA 59.391 57.895 14.67 1.20 35.85 2.92
191 192 1.524621 CGACCCTGCCATGGTGATC 60.525 63.158 14.67 3.76 35.85 2.92
192 193 1.852157 AACGACCCTGCCATGGTGAT 61.852 55.000 14.67 0.00 35.85 3.06
193 194 2.063015 AAACGACCCTGCCATGGTGA 62.063 55.000 14.67 0.00 35.85 4.02
194 195 1.178534 AAAACGACCCTGCCATGGTG 61.179 55.000 14.67 6.76 35.85 4.17
195 196 0.893727 GAAAACGACCCTGCCATGGT 60.894 55.000 14.67 0.00 39.32 3.55
196 197 0.609131 AGAAAACGACCCTGCCATGG 60.609 55.000 7.63 7.63 0.00 3.66
197 198 0.804989 GAGAAAACGACCCTGCCATG 59.195 55.000 0.00 0.00 0.00 3.66
198 199 0.693049 AGAGAAAACGACCCTGCCAT 59.307 50.000 0.00 0.00 0.00 4.40
199 200 0.472471 AAGAGAAAACGACCCTGCCA 59.528 50.000 0.00 0.00 0.00 4.92
200 201 1.605753 AAAGAGAAAACGACCCTGCC 58.394 50.000 0.00 0.00 0.00 4.85
201 202 3.550233 GGAAAAAGAGAAAACGACCCTGC 60.550 47.826 0.00 0.00 0.00 4.85
202 203 3.883489 AGGAAAAAGAGAAAACGACCCTG 59.117 43.478 0.00 0.00 0.00 4.45
203 204 4.166246 AGGAAAAAGAGAAAACGACCCT 57.834 40.909 0.00 0.00 0.00 4.34
204 205 4.913335 AAGGAAAAAGAGAAAACGACCC 57.087 40.909 0.00 0.00 0.00 4.46
244 245 1.171308 ACATTCAGGATGCACACAGC 58.829 50.000 0.00 0.00 45.96 4.40
245 246 3.928727 AAACATTCAGGATGCACACAG 57.071 42.857 0.00 0.00 39.47 3.66
246 247 4.669206 AAAAACATTCAGGATGCACACA 57.331 36.364 0.00 0.00 39.47 3.72
247 248 5.163513 CCTAAAAACATTCAGGATGCACAC 58.836 41.667 0.00 0.00 39.47 3.82
248 249 4.321899 GCCTAAAAACATTCAGGATGCACA 60.322 41.667 0.00 0.00 39.47 4.57
249 250 4.176271 GCCTAAAAACATTCAGGATGCAC 58.824 43.478 0.00 0.00 39.47 4.57
250 251 3.831333 TGCCTAAAAACATTCAGGATGCA 59.169 39.130 0.00 0.00 39.47 3.96
251 252 4.454728 TGCCTAAAAACATTCAGGATGC 57.545 40.909 0.00 0.00 39.47 3.91
252 253 6.461110 AGATGCCTAAAAACATTCAGGATG 57.539 37.500 0.00 0.00 41.71 3.51
253 254 6.438425 ACAAGATGCCTAAAAACATTCAGGAT 59.562 34.615 0.00 0.00 0.00 3.24
254 255 5.774690 ACAAGATGCCTAAAAACATTCAGGA 59.225 36.000 0.00 0.00 0.00 3.86
255 256 6.029346 ACAAGATGCCTAAAAACATTCAGG 57.971 37.500 0.00 0.00 0.00 3.86
256 257 6.366877 CCAACAAGATGCCTAAAAACATTCAG 59.633 38.462 0.00 0.00 0.00 3.02
257 258 6.183360 ACCAACAAGATGCCTAAAAACATTCA 60.183 34.615 0.00 0.00 0.00 2.57
258 259 6.146021 CACCAACAAGATGCCTAAAAACATTC 59.854 38.462 0.00 0.00 0.00 2.67
259 260 5.990996 CACCAACAAGATGCCTAAAAACATT 59.009 36.000 0.00 0.00 0.00 2.71
260 261 5.540911 CACCAACAAGATGCCTAAAAACAT 58.459 37.500 0.00 0.00 0.00 2.71
261 262 4.739137 GCACCAACAAGATGCCTAAAAACA 60.739 41.667 0.00 0.00 33.06 2.83
262 263 3.740832 GCACCAACAAGATGCCTAAAAAC 59.259 43.478 0.00 0.00 33.06 2.43
263 264 3.386078 TGCACCAACAAGATGCCTAAAAA 59.614 39.130 0.00 0.00 38.63 1.94
264 265 2.961741 TGCACCAACAAGATGCCTAAAA 59.038 40.909 0.00 0.00 38.63 1.52
265 266 2.591923 TGCACCAACAAGATGCCTAAA 58.408 42.857 0.00 0.00 38.63 1.85
266 267 2.284754 TGCACCAACAAGATGCCTAA 57.715 45.000 0.00 0.00 38.63 2.69
267 268 2.284754 TTGCACCAACAAGATGCCTA 57.715 45.000 0.00 0.00 38.63 3.93
268 269 1.342174 CTTTGCACCAACAAGATGCCT 59.658 47.619 0.00 0.00 38.63 4.75
269 270 1.606224 CCTTTGCACCAACAAGATGCC 60.606 52.381 0.00 0.00 38.63 4.40
270 271 1.787012 CCTTTGCACCAACAAGATGC 58.213 50.000 0.00 0.00 39.88 3.91
271 272 1.342174 AGCCTTTGCACCAACAAGATG 59.658 47.619 0.00 0.00 41.13 2.90
272 273 1.342174 CAGCCTTTGCACCAACAAGAT 59.658 47.619 0.00 0.00 41.13 2.40
273 274 0.746063 CAGCCTTTGCACCAACAAGA 59.254 50.000 0.00 0.00 41.13 3.02
274 275 0.249573 CCAGCCTTTGCACCAACAAG 60.250 55.000 0.00 0.00 41.13 3.16
275 276 1.684386 CCCAGCCTTTGCACCAACAA 61.684 55.000 0.00 0.00 41.13 2.83
276 277 2.132996 CCCAGCCTTTGCACCAACA 61.133 57.895 0.00 0.00 41.13 3.33
277 278 2.133641 ACCCAGCCTTTGCACCAAC 61.134 57.895 0.00 0.00 41.13 3.77
278 279 2.132996 CACCCAGCCTTTGCACCAA 61.133 57.895 0.00 0.00 41.13 3.67
279 280 2.000825 TACACCCAGCCTTTGCACCA 62.001 55.000 0.00 0.00 41.13 4.17
280 281 0.825840 TTACACCCAGCCTTTGCACC 60.826 55.000 0.00 0.00 41.13 5.01
281 282 1.256812 ATTACACCCAGCCTTTGCAC 58.743 50.000 0.00 0.00 41.13 4.57
282 283 1.617850 CAATTACACCCAGCCTTTGCA 59.382 47.619 0.00 0.00 41.13 4.08
283 284 1.066929 CCAATTACACCCAGCCTTTGC 60.067 52.381 0.00 0.00 37.95 3.68
284 285 2.247358 ACCAATTACACCCAGCCTTTG 58.753 47.619 0.00 0.00 0.00 2.77
285 286 2.694616 ACCAATTACACCCAGCCTTT 57.305 45.000 0.00 0.00 0.00 3.11
286 287 3.527665 AGATACCAATTACACCCAGCCTT 59.472 43.478 0.00 0.00 0.00 4.35
287 288 3.123273 AGATACCAATTACACCCAGCCT 58.877 45.455 0.00 0.00 0.00 4.58
288 289 3.577805 AGATACCAATTACACCCAGCC 57.422 47.619 0.00 0.00 0.00 4.85
289 290 4.386711 GGTAGATACCAATTACACCCAGC 58.613 47.826 4.09 0.00 45.73 4.85
302 303 3.195661 CGCCACTTTTCAGGTAGATACC 58.804 50.000 0.43 0.43 46.82 2.73
303 304 3.858247 ACGCCACTTTTCAGGTAGATAC 58.142 45.455 0.00 0.00 0.00 2.24
304 305 4.951715 TCTACGCCACTTTTCAGGTAGATA 59.048 41.667 0.00 0.00 33.46 1.98
305 306 3.767673 TCTACGCCACTTTTCAGGTAGAT 59.232 43.478 0.00 0.00 33.46 1.98
306 307 3.057033 GTCTACGCCACTTTTCAGGTAGA 60.057 47.826 0.00 0.00 35.35 2.59
307 308 3.251571 GTCTACGCCACTTTTCAGGTAG 58.748 50.000 0.00 0.00 0.00 3.18
308 309 2.629137 TGTCTACGCCACTTTTCAGGTA 59.371 45.455 0.00 0.00 0.00 3.08
309 310 1.414919 TGTCTACGCCACTTTTCAGGT 59.585 47.619 0.00 0.00 0.00 4.00
310 311 2.163818 TGTCTACGCCACTTTTCAGG 57.836 50.000 0.00 0.00 0.00 3.86
311 312 3.390135 TCTTGTCTACGCCACTTTTCAG 58.610 45.455 0.00 0.00 0.00 3.02
312 313 3.462483 TCTTGTCTACGCCACTTTTCA 57.538 42.857 0.00 0.00 0.00 2.69
313 314 4.056050 TCTTCTTGTCTACGCCACTTTTC 58.944 43.478 0.00 0.00 0.00 2.29
314 315 3.808174 GTCTTCTTGTCTACGCCACTTTT 59.192 43.478 0.00 0.00 0.00 2.27
315 316 3.181469 TGTCTTCTTGTCTACGCCACTTT 60.181 43.478 0.00 0.00 0.00 2.66
316 317 2.364324 TGTCTTCTTGTCTACGCCACTT 59.636 45.455 0.00 0.00 0.00 3.16
317 318 1.961394 TGTCTTCTTGTCTACGCCACT 59.039 47.619 0.00 0.00 0.00 4.00
349 350 8.697507 ACAACAAAAATAATTGGCCCATTTTA 57.302 26.923 7.46 0.00 32.89 1.52
378 380 6.463995 AGCTACACAAAACAAAAATCCAGA 57.536 33.333 0.00 0.00 0.00 3.86
379 381 6.509997 GCAAGCTACACAAAACAAAAATCCAG 60.510 38.462 0.00 0.00 0.00 3.86
380 382 5.293079 GCAAGCTACACAAAACAAAAATCCA 59.707 36.000 0.00 0.00 0.00 3.41
389 391 7.636259 TTATGATTTGCAAGCTACACAAAAC 57.364 32.000 11.36 9.81 36.90 2.43
425 427 7.672983 ATTCGCGATGGATCTGTAAATTTAT 57.327 32.000 10.88 0.00 0.00 1.40
426 428 8.655970 CATATTCGCGATGGATCTGTAAATTTA 58.344 33.333 10.88 0.00 0.00 1.40
570 573 4.951254 TGAAATGAGACAAGTCCACGTTA 58.049 39.130 0.00 0.00 0.00 3.18
582 585 4.633565 CCTAGAGGCAAACTGAAATGAGAC 59.366 45.833 0.00 0.00 0.00 3.36
629 632 2.180276 GACAGGGTGACATACTGACCT 58.820 52.381 14.10 0.00 36.17 3.85
661 664 6.743575 AACCATTGAGAGTATAGTTGTTGC 57.256 37.500 0.00 0.00 0.00 4.17
724 734 1.277273 CTCTGGTTGACTGATGAGGCA 59.723 52.381 0.00 0.00 34.32 4.75
793 803 3.004734 AGGTTTTGGAGCAGAATGTTTCG 59.995 43.478 0.00 0.00 39.31 3.46
794 804 4.590850 AGGTTTTGGAGCAGAATGTTTC 57.409 40.909 0.00 0.00 39.31 2.78
795 805 4.280929 GGTAGGTTTTGGAGCAGAATGTTT 59.719 41.667 0.00 0.00 39.31 2.83
796 806 3.826729 GGTAGGTTTTGGAGCAGAATGTT 59.173 43.478 0.00 0.00 39.31 2.71
801 811 0.321298 GCGGTAGGTTTTGGAGCAGA 60.321 55.000 0.00 0.00 0.00 4.26
821 831 2.602878 ACGTTCGTGCGATATTTCTGT 58.397 42.857 8.18 0.00 35.59 3.41
822 832 3.360765 GCTACGTTCGTGCGATATTTCTG 60.361 47.826 8.14 0.00 35.59 3.02
823 833 2.787680 GCTACGTTCGTGCGATATTTCT 59.212 45.455 8.14 0.00 35.59 2.52
824 834 2.532723 TGCTACGTTCGTGCGATATTTC 59.467 45.455 8.14 0.00 35.59 2.17
826 836 2.197792 TGCTACGTTCGTGCGATATT 57.802 45.000 8.14 0.00 35.59 1.28
828 838 1.979897 TTTGCTACGTTCGTGCGATA 58.020 45.000 8.14 0.00 35.59 2.92
831 841 2.773036 TATTTTGCTACGTTCGTGCG 57.227 45.000 8.14 0.76 37.94 5.34
832 842 5.386627 GGTTTTTATTTTGCTACGTTCGTGC 60.387 40.000 8.14 9.75 0.00 5.34
833 843 5.681982 TGGTTTTTATTTTGCTACGTTCGTG 59.318 36.000 8.14 0.08 0.00 4.35
834 844 5.819059 TGGTTTTTATTTTGCTACGTTCGT 58.181 33.333 0.00 2.91 0.00 3.85
835 845 5.341196 CCTGGTTTTTATTTTGCTACGTTCG 59.659 40.000 0.00 0.00 0.00 3.95
836 846 5.631929 CCCTGGTTTTTATTTTGCTACGTTC 59.368 40.000 0.00 0.00 0.00 3.95
837 847 5.302313 TCCCTGGTTTTTATTTTGCTACGTT 59.698 36.000 0.00 0.00 0.00 3.99
838 848 4.828387 TCCCTGGTTTTTATTTTGCTACGT 59.172 37.500 0.00 0.00 0.00 3.57
839 849 5.379732 TCCCTGGTTTTTATTTTGCTACG 57.620 39.130 0.00 0.00 0.00 3.51
840 850 6.071051 TGGATCCCTGGTTTTTATTTTGCTAC 60.071 38.462 9.90 0.00 0.00 3.58
858 868 2.035066 CCGAAAAGCATTCATGGATCCC 59.965 50.000 9.90 0.00 0.00 3.85
859 869 2.689983 ACCGAAAAGCATTCATGGATCC 59.310 45.455 4.20 4.20 0.00 3.36
868 878 2.096614 CACGTTACGACCGAAAAGCATT 60.097 45.455 13.03 0.00 0.00 3.56
872 882 2.118683 TCACACGTTACGACCGAAAAG 58.881 47.619 13.03 0.00 0.00 2.27
877 887 1.069973 TGTACTCACACGTTACGACCG 60.070 52.381 13.03 1.74 0.00 4.79
878 888 2.686558 TGTACTCACACGTTACGACC 57.313 50.000 13.03 0.00 0.00 4.79
879 889 5.621422 TCTTATGTACTCACACGTTACGAC 58.379 41.667 13.03 0.00 37.54 4.34
881 891 6.183359 GGTTTCTTATGTACTCACACGTTACG 60.183 42.308 2.19 2.19 37.54 3.18
905 915 2.118679 TCTGTGTGATAGGTGGGATGG 58.881 52.381 0.00 0.00 0.00 3.51
934 944 1.839994 TGTCAGGATTGGGAGATGGAC 59.160 52.381 0.00 0.00 0.00 4.02
987 997 2.263540 GCCATGCTTGGTTGCCAG 59.736 61.111 19.05 0.00 45.57 4.85
988 998 2.523657 TGCCATGCTTGGTTGCCA 60.524 55.556 19.05 6.54 45.57 4.92
989 999 2.263540 CTGCCATGCTTGGTTGCC 59.736 61.111 19.05 4.03 45.57 4.52
990 1000 2.433664 GCTGCCATGCTTGGTTGC 60.434 61.111 19.05 17.96 45.57 4.17
991 1001 1.080093 CAGCTGCCATGCTTGGTTG 60.080 57.895 19.05 12.96 45.57 3.77
992 1002 2.939261 GCAGCTGCCATGCTTGGTT 61.939 57.895 28.76 1.61 45.57 3.67
1437 1461 2.599578 AGGTACGTGCGGTCCAGT 60.600 61.111 0.00 0.00 0.00 4.00
1552 1576 0.698238 TGATGGGGTGCTTAGTGCTT 59.302 50.000 0.00 0.00 43.37 3.91
1557 1581 4.186926 CGATATGATGATGGGGTGCTTAG 58.813 47.826 0.00 0.00 0.00 2.18
1558 1582 3.619733 GCGATATGATGATGGGGTGCTTA 60.620 47.826 0.00 0.00 0.00 3.09
1559 1583 2.877300 GCGATATGATGATGGGGTGCTT 60.877 50.000 0.00 0.00 0.00 3.91
1560 1584 1.339438 GCGATATGATGATGGGGTGCT 60.339 52.381 0.00 0.00 0.00 4.40
1561 1585 1.089920 GCGATATGATGATGGGGTGC 58.910 55.000 0.00 0.00 0.00 5.01
1562 1586 2.079158 GTGCGATATGATGATGGGGTG 58.921 52.381 0.00 0.00 0.00 4.61
1563 1587 1.003580 GGTGCGATATGATGATGGGGT 59.996 52.381 0.00 0.00 0.00 4.95
1564 1588 1.003464 TGGTGCGATATGATGATGGGG 59.997 52.381 0.00 0.00 0.00 4.96
1565 1589 2.027837 TCTGGTGCGATATGATGATGGG 60.028 50.000 0.00 0.00 0.00 4.00
1569 1593 4.122046 CTGTTTCTGGTGCGATATGATGA 58.878 43.478 0.00 0.00 0.00 2.92
1611 1638 2.300967 TGGCAGAGCAGGGGTAAGG 61.301 63.158 0.00 0.00 0.00 2.69
1612 1639 1.078143 GTGGCAGAGCAGGGGTAAG 60.078 63.158 0.00 0.00 0.00 2.34
1613 1640 1.538876 AGTGGCAGAGCAGGGGTAA 60.539 57.895 0.00 0.00 0.00 2.85
1614 1641 1.990060 GAGTGGCAGAGCAGGGGTA 60.990 63.158 0.00 0.00 0.00 3.69
1617 1644 2.046507 GTGAGTGGCAGAGCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
1633 1660 0.515564 GCGCAATCTGTAAACACGGT 59.484 50.000 0.30 0.00 0.00 4.83
1805 1832 5.288952 ACGAACTCTCTTAAAATCTAAGCGC 59.711 40.000 0.00 0.00 0.00 5.92
1815 1842 4.982916 GTCTGCTCAACGAACTCTCTTAAA 59.017 41.667 0.00 0.00 0.00 1.52
1819 1846 1.271102 GGTCTGCTCAACGAACTCTCT 59.729 52.381 0.00 0.00 0.00 3.10
1820 1847 1.670380 GGGTCTGCTCAACGAACTCTC 60.670 57.143 0.00 0.00 0.00 3.20
1821 1848 0.318762 GGGTCTGCTCAACGAACTCT 59.681 55.000 0.00 0.00 0.00 3.24
1822 1849 0.033504 TGGGTCTGCTCAACGAACTC 59.966 55.000 0.00 0.00 0.00 3.01
1823 1850 0.468226 TTGGGTCTGCTCAACGAACT 59.532 50.000 0.00 0.00 28.50 3.01
1824 1851 0.586802 GTTGGGTCTGCTCAACGAAC 59.413 55.000 0.00 0.00 44.94 3.95
1825 1852 3.000815 GTTGGGTCTGCTCAACGAA 57.999 52.632 0.00 0.00 44.94 3.85
1826 1853 4.771127 GTTGGGTCTGCTCAACGA 57.229 55.556 0.00 0.00 44.94 3.85
1829 1856 1.150536 GGGTGTTGGGTCTGCTCAA 59.849 57.895 0.00 0.00 31.62 3.02
1830 1857 0.472925 TAGGGTGTTGGGTCTGCTCA 60.473 55.000 0.00 0.00 0.00 4.26
1831 1858 0.250513 CTAGGGTGTTGGGTCTGCTC 59.749 60.000 0.00 0.00 0.00 4.26
1832 1859 1.201429 CCTAGGGTGTTGGGTCTGCT 61.201 60.000 0.00 0.00 0.00 4.24
1833 1860 1.198759 TCCTAGGGTGTTGGGTCTGC 61.199 60.000 9.46 0.00 0.00 4.26
1834 1861 1.358152 TTCCTAGGGTGTTGGGTCTG 58.642 55.000 9.46 0.00 0.00 3.51
1836 1863 1.004394 CCTTTCCTAGGGTGTTGGGTC 59.996 57.143 9.46 0.00 40.67 4.46
1838 1865 3.978876 CCTTTCCTAGGGTGTTGGG 57.021 57.895 9.46 0.00 40.67 4.12
1852 1879 9.840427 CGATTGATTAGTTGTTAATTCACCTTT 57.160 29.630 0.00 0.00 32.09 3.11
1853 1880 9.226606 TCGATTGATTAGTTGTTAATTCACCTT 57.773 29.630 0.00 0.00 32.09 3.50
1855 1882 9.651718 GATCGATTGATTAGTTGTTAATTCACC 57.348 33.333 0.00 0.00 34.09 4.02
1856 1883 9.358123 CGATCGATTGATTAGTTGTTAATTCAC 57.642 33.333 10.26 0.00 34.09 3.18
1857 1884 9.308318 TCGATCGATTGATTAGTTGTTAATTCA 57.692 29.630 15.15 0.00 34.09 2.57
1866 1893 7.595502 GGTGTTAGATCGATCGATTGATTAGTT 59.404 37.037 29.89 15.33 34.09 2.24
1878 1939 2.350197 CCGTACGGGTGTTAGATCGATC 60.350 54.545 27.00 17.91 0.00 3.69
1922 1987 2.625314 CAGCTCGATGACCTCCTGATTA 59.375 50.000 0.00 0.00 0.00 1.75
1934 1999 2.279120 GTCGCTCCCAGCTCGATG 60.279 66.667 0.00 0.00 39.60 3.84
2119 2184 2.355363 CGTCGGCGTTGACCTTGA 60.355 61.111 6.85 0.00 35.40 3.02
2221 2286 1.228894 AGGCTCCTGACGTCTTGGA 60.229 57.895 22.76 22.76 0.00 3.53
2291 2361 0.741221 GTCGAACCCTGCCATGAGAC 60.741 60.000 0.00 0.00 0.00 3.36
2292 2362 1.596934 GTCGAACCCTGCCATGAGA 59.403 57.895 0.00 0.00 0.00 3.27
2293 2363 1.811266 CGTCGAACCCTGCCATGAG 60.811 63.158 0.00 0.00 0.00 2.90
2589 2674 3.186047 GCAACCCATCGACGACGG 61.186 66.667 2.21 2.21 40.21 4.79
2638 2723 2.496899 ACACCGAAATTGGAGCTGAT 57.503 45.000 0.00 0.00 0.00 2.90
2656 2741 6.910433 TGCGAGATTGTGTTCTAAAAGAAAAC 59.090 34.615 3.47 3.47 41.70 2.43
2664 2757 3.038788 TGCTGCGAGATTGTGTTCTAA 57.961 42.857 0.00 0.00 0.00 2.10
2666 2759 2.005451 GATGCTGCGAGATTGTGTTCT 58.995 47.619 0.00 0.00 0.00 3.01
2690 2783 7.365028 GGCCCTATTTTCAAGGAAATCAAGAAT 60.365 37.037 0.00 0.00 36.08 2.40
2726 2821 5.699915 GCATATGTCTACAGCTGTGAATGAT 59.300 40.000 29.57 15.67 0.00 2.45
2728 2823 4.812626 TGCATATGTCTACAGCTGTGAATG 59.187 41.667 29.57 21.26 0.00 2.67
2737 2832 5.660460 TGTAACCTGTGCATATGTCTACAG 58.340 41.667 20.52 20.52 40.06 2.74
2799 2894 1.416401 ACATCCGGAACACTGTGAACT 59.584 47.619 15.86 0.00 0.00 3.01
2827 2922 1.743321 CTTTGCCTCGGGTTTGCCAA 61.743 55.000 0.00 0.00 36.17 4.52
2835 2930 1.101049 AACACACACTTTGCCTCGGG 61.101 55.000 0.00 0.00 0.00 5.14
2841 2936 0.179113 CCCACCAACACACACTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
2846 2941 2.124693 CCCACCCACCAACACACAC 61.125 63.158 0.00 0.00 0.00 3.82
2848 2943 2.124693 CACCCACCCACCAACACAC 61.125 63.158 0.00 0.00 0.00 3.82
2861 2956 3.882670 AACTCCCCCTCCCACCCA 61.883 66.667 0.00 0.00 0.00 4.51
2869 2967 1.988406 GACTACCGCAACTCCCCCT 60.988 63.158 0.00 0.00 0.00 4.79
2883 2981 2.283604 TGACTGCTGCCCGGACTA 60.284 61.111 0.73 0.00 0.00 2.59
2891 2989 0.456995 GAGTCCTACGTGACTGCTGC 60.457 60.000 12.81 0.00 45.41 5.25
2920 3018 4.565850 GGGGTTTTGGGTGGGCCA 62.566 66.667 0.00 0.00 36.17 5.36
2952 3050 3.713764 GAGAGAAAATGGGAGGATGGAGA 59.286 47.826 0.00 0.00 0.00 3.71
2987 3087 1.081641 GCGACGACGAAGACAGGAA 60.082 57.895 12.29 0.00 42.66 3.36
2990 3090 1.512310 GGAGCGACGACGAAGACAG 60.512 63.158 12.29 0.00 42.66 3.51
2993 3093 2.559840 GTGGAGCGACGACGAAGA 59.440 61.111 12.29 0.00 42.66 2.87
3027 3128 4.265056 GTTCCGGCAGGGGTGTGT 62.265 66.667 2.05 0.00 38.33 3.72
3066 3169 2.056223 TGGAGCCTAGGTGTACCGC 61.056 63.158 11.31 0.00 42.08 5.68
3088 3191 3.307906 AGCGGCGGTGGACAAGTA 61.308 61.111 12.25 0.00 0.00 2.24
3162 3270 3.044059 GAACAGCTGTCGGGCATGC 62.044 63.158 21.95 9.90 34.17 4.06
3247 3358 5.050295 CGACTCAACATAGTGCTCGTAGATA 60.050 44.000 0.00 0.00 33.89 1.98
3250 3361 3.181509 ACGACTCAACATAGTGCTCGTAG 60.182 47.826 0.00 0.00 29.05 3.51
3323 3440 3.853330 CGCGTCTGCAATCACCGG 61.853 66.667 0.00 0.00 42.97 5.28
3392 3510 2.032634 GGTCGCGGTTGAGCATTCA 61.033 57.895 6.13 0.00 36.41 2.57
3459 3579 3.304659 GCAAAAATTGTCAGCGAAGAGGA 60.305 43.478 0.00 0.00 0.00 3.71
3483 3603 0.755686 TTTGCCCATCCAAAAGCGTT 59.244 45.000 0.00 0.00 32.20 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.