Multiple sequence alignment - TraesCS3D01G134000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G134000 chr3D 100.000 3660 0 0 1 3660 93195344 93199003 0.000000e+00 6759.0
1 TraesCS3D01G134000 chr3B 84.701 2608 197 88 329 2869 143161605 143159133 0.000000e+00 2420.0
2 TraesCS3D01G134000 chr3B 91.820 489 28 7 2389 2873 143157904 143157424 0.000000e+00 671.0
3 TraesCS3D01G134000 chr3B 91.156 294 18 6 2913 3205 143157349 143157063 3.430000e-105 392.0
4 TraesCS3D01G134000 chr3B 89.540 239 17 5 3217 3447 143155472 143155234 2.760000e-76 296.0
5 TraesCS3D01G134000 chr3B 93.396 106 7 0 3 108 143162165 143162060 1.360000e-34 158.0
6 TraesCS3D01G134000 chr3A 87.365 2224 139 55 713 2876 546684349 546682208 0.000000e+00 2420.0
7 TraesCS3D01G134000 chr3A 91.972 573 32 11 2878 3444 546682153 546681589 0.000000e+00 791.0
8 TraesCS3D01G134000 chr3A 89.655 116 8 2 3 115 546684934 546684820 1.060000e-30 145.0
9 TraesCS3D01G134000 chr6A 96.970 33 1 0 1047 1079 45046327 45046295 5.110000e-04 56.5
10 TraesCS3D01G134000 chr6A 96.970 33 0 1 1048 1079 45056856 45056824 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G134000 chr3D 93195344 93199003 3659 False 6759.000000 6759 100.0000 1 3660 1 chr3D.!!$F1 3659
1 TraesCS3D01G134000 chr3B 143155234 143162165 6931 True 787.400000 2420 90.1226 3 3447 5 chr3B.!!$R1 3444
2 TraesCS3D01G134000 chr3A 546681589 546684934 3345 True 1118.666667 2420 89.6640 3 3444 3 chr3A.!!$R1 3441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 131 0.038251 ACACGCTCTCTTTGATCGCA 60.038 50.0 0.0 0.0 37.78 5.10 F
1849 2328 0.036388 AGCAACACACCCAGGTATCG 60.036 55.0 0.0 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2551 0.167251 CATGTTTACCCGGCGACAAC 59.833 55.0 9.3 5.99 0.00 3.32 R
3613 7520 0.449388 CGGAAGCAAATCTGTGCCTC 59.551 55.0 0.0 0.00 46.14 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 115 1.993370 GACACGAGGCAACATAGACAC 59.007 52.381 0.00 0.00 41.41 3.67
115 119 1.281899 GAGGCAACATAGACACGCTC 58.718 55.000 0.00 0.00 41.41 5.03
117 121 1.134965 AGGCAACATAGACACGCTCTC 60.135 52.381 0.00 0.00 41.41 3.20
118 122 1.134965 GGCAACATAGACACGCTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
119 123 2.611518 GCAACATAGACACGCTCTCTT 58.388 47.619 0.00 0.00 0.00 2.85
120 124 2.996621 GCAACATAGACACGCTCTCTTT 59.003 45.455 0.00 0.00 0.00 2.52
121 125 3.181526 GCAACATAGACACGCTCTCTTTG 60.182 47.826 0.00 0.00 0.00 2.77
123 127 4.727507 ACATAGACACGCTCTCTTTGAT 57.272 40.909 3.21 0.00 0.00 2.57
124 128 4.677584 ACATAGACACGCTCTCTTTGATC 58.322 43.478 0.00 0.00 0.00 2.92
125 129 2.270275 AGACACGCTCTCTTTGATCG 57.730 50.000 0.00 0.00 39.83 3.69
127 131 0.038251 ACACGCTCTCTTTGATCGCA 60.038 50.000 0.00 0.00 37.78 5.10
128 132 0.644331 CACGCTCTCTTTGATCGCAG 59.356 55.000 0.00 0.00 37.78 5.18
130 134 1.472878 ACGCTCTCTTTGATCGCAGTA 59.527 47.619 0.00 0.00 37.78 2.74
131 135 2.115595 CGCTCTCTTTGATCGCAGTAG 58.884 52.381 0.00 0.00 0.00 2.57
132 136 1.857837 GCTCTCTTTGATCGCAGTAGC 59.142 52.381 0.00 0.00 37.42 3.58
134 138 1.202302 TCTCTTTGATCGCAGTAGCCG 60.202 52.381 0.00 0.00 37.52 5.52
135 139 0.179111 TCTTTGATCGCAGTAGCCGG 60.179 55.000 0.00 0.00 37.52 6.13
137 141 1.609635 TTTGATCGCAGTAGCCGGGA 61.610 55.000 2.18 0.00 37.52 5.14
138 142 1.399744 TTGATCGCAGTAGCCGGGAT 61.400 55.000 2.18 0.00 38.61 3.85
139 143 1.367840 GATCGCAGTAGCCGGGATT 59.632 57.895 2.18 0.00 36.30 3.01
140 144 0.601558 GATCGCAGTAGCCGGGATTA 59.398 55.000 2.18 0.00 36.30 1.75
143 147 0.104304 CGCAGTAGCCGGGATTAACT 59.896 55.000 2.18 0.00 37.52 2.24
144 148 1.472728 CGCAGTAGCCGGGATTAACTT 60.473 52.381 2.18 0.00 37.52 2.66
146 150 3.014623 GCAGTAGCCGGGATTAACTTTT 58.985 45.455 2.18 0.00 33.58 2.27
147 151 3.181500 GCAGTAGCCGGGATTAACTTTTG 60.181 47.826 2.18 0.00 33.58 2.44
149 153 4.698304 CAGTAGCCGGGATTAACTTTTGAA 59.302 41.667 2.18 0.00 0.00 2.69
150 154 5.182380 CAGTAGCCGGGATTAACTTTTGAAA 59.818 40.000 2.18 0.00 0.00 2.69
151 155 4.783764 AGCCGGGATTAACTTTTGAAAG 57.216 40.909 2.18 2.06 41.73 2.62
152 156 3.509967 AGCCGGGATTAACTTTTGAAAGG 59.490 43.478 2.18 0.00 40.31 3.11
155 159 5.650543 CCGGGATTAACTTTTGAAAGGATG 58.349 41.667 8.23 0.00 40.31 3.51
158 162 6.398095 GGGATTAACTTTTGAAAGGATGTGG 58.602 40.000 8.23 0.00 40.31 4.17
159 163 6.398095 GGATTAACTTTTGAAAGGATGTGGG 58.602 40.000 8.23 0.00 40.31 4.61
161 165 7.177744 GGATTAACTTTTGAAAGGATGTGGGTA 59.822 37.037 8.23 0.00 40.31 3.69
162 166 7.899648 TTAACTTTTGAAAGGATGTGGGTAA 57.100 32.000 8.23 0.00 40.31 2.85
164 168 6.994421 ACTTTTGAAAGGATGTGGGTAAAT 57.006 33.333 8.23 0.00 40.31 1.40
165 169 6.993079 ACTTTTGAAAGGATGTGGGTAAATC 58.007 36.000 8.23 0.00 40.31 2.17
166 170 6.782494 ACTTTTGAAAGGATGTGGGTAAATCT 59.218 34.615 8.23 0.00 40.31 2.40
167 171 6.834168 TTTGAAAGGATGTGGGTAAATCTC 57.166 37.500 0.00 0.00 0.00 2.75
169 173 5.500234 TGAAAGGATGTGGGTAAATCTCAG 58.500 41.667 0.00 0.00 0.00 3.35
170 174 5.014123 TGAAAGGATGTGGGTAAATCTCAGT 59.986 40.000 0.00 0.00 0.00 3.41
171 175 4.762289 AGGATGTGGGTAAATCTCAGTC 57.238 45.455 0.00 0.00 0.00 3.51
172 176 3.133003 AGGATGTGGGTAAATCTCAGTCG 59.867 47.826 0.00 0.00 0.00 4.18
173 177 3.132289 GGATGTGGGTAAATCTCAGTCGA 59.868 47.826 0.00 0.00 0.00 4.20
174 178 3.868757 TGTGGGTAAATCTCAGTCGAG 57.131 47.619 0.00 0.00 40.98 4.04
175 179 3.162666 TGTGGGTAAATCTCAGTCGAGT 58.837 45.455 0.00 0.00 40.44 4.18
176 180 3.192844 TGTGGGTAAATCTCAGTCGAGTC 59.807 47.826 0.00 0.00 40.44 3.36
177 181 3.444388 GTGGGTAAATCTCAGTCGAGTCT 59.556 47.826 0.00 0.00 40.44 3.24
178 182 3.444034 TGGGTAAATCTCAGTCGAGTCTG 59.556 47.826 0.00 0.00 40.44 3.51
179 183 3.695060 GGGTAAATCTCAGTCGAGTCTGA 59.305 47.826 5.69 5.69 41.40 3.27
188 192 3.752222 TCAGTCGAGTCTGAGACTTAACC 59.248 47.826 17.31 2.71 44.46 2.85
189 193 3.502595 CAGTCGAGTCTGAGACTTAACCA 59.497 47.826 17.31 0.00 44.46 3.67
190 194 4.023107 CAGTCGAGTCTGAGACTTAACCAA 60.023 45.833 17.31 0.00 44.46 3.67
191 195 4.216687 AGTCGAGTCTGAGACTTAACCAAG 59.783 45.833 17.31 3.32 44.46 3.61
192 196 8.171432 CAGTCGAGTCTGAGACTTAACCAAGT 62.171 46.154 17.31 0.10 44.46 3.16
207 211 9.403583 ACTTAACCAAGTCTGAAGTTAAAATGA 57.596 29.630 0.00 0.00 41.25 2.57
208 212 9.665264 CTTAACCAAGTCTGAAGTTAAAATGAC 57.335 33.333 0.00 0.00 35.06 3.06
209 213 7.639113 AACCAAGTCTGAAGTTAAAATGACA 57.361 32.000 0.00 0.00 0.00 3.58
210 214 7.639113 ACCAAGTCTGAAGTTAAAATGACAA 57.361 32.000 0.00 0.00 0.00 3.18
211 215 8.062065 ACCAAGTCTGAAGTTAAAATGACAAA 57.938 30.769 0.00 0.00 0.00 2.83
212 216 8.527810 ACCAAGTCTGAAGTTAAAATGACAAAA 58.472 29.630 0.00 0.00 0.00 2.44
213 217 8.807581 CCAAGTCTGAAGTTAAAATGACAAAAC 58.192 33.333 0.00 0.00 0.00 2.43
214 218 9.352784 CAAGTCTGAAGTTAAAATGACAAAACA 57.647 29.630 0.00 0.00 0.00 2.83
271 643 6.600882 AAAATCTTGCATGGATCTTCACTT 57.399 33.333 0.00 0.00 0.00 3.16
276 648 6.946340 TCTTGCATGGATCTTCACTTAAGTA 58.054 36.000 8.04 0.00 36.51 2.24
277 649 7.568349 TCTTGCATGGATCTTCACTTAAGTAT 58.432 34.615 8.04 0.00 36.51 2.12
282 654 7.429633 CATGGATCTTCACTTAAGTATCGACT 58.570 38.462 8.04 0.00 37.59 4.18
283 655 6.796426 TGGATCTTCACTTAAGTATCGACTG 58.204 40.000 8.04 0.00 35.52 3.51
285 657 7.136119 GGATCTTCACTTAAGTATCGACTGAG 58.864 42.308 8.04 0.00 35.52 3.35
287 659 7.074507 TCTTCACTTAAGTATCGACTGAGAC 57.925 40.000 8.04 0.00 35.52 3.36
295 667 5.821516 AGTATCGACTGAGACTTGGTAAG 57.178 43.478 0.00 0.00 43.97 2.34
296 668 5.254901 AGTATCGACTGAGACTTGGTAAGT 58.745 41.667 0.00 0.00 43.97 2.24
300 672 3.502595 CGACTGAGACTTGGTAAGTGAGA 59.497 47.826 0.00 0.00 43.03 3.27
301 673 4.156922 CGACTGAGACTTGGTAAGTGAGAT 59.843 45.833 0.00 0.00 43.03 2.75
303 675 6.038825 CGACTGAGACTTGGTAAGTGAGATAT 59.961 42.308 0.00 0.00 43.03 1.63
304 676 7.226918 CGACTGAGACTTGGTAAGTGAGATATA 59.773 40.741 0.00 0.00 43.03 0.86
306 678 8.688151 ACTGAGACTTGGTAAGTGAGATATAAC 58.312 37.037 0.00 0.00 43.03 1.89
308 680 9.031537 TGAGACTTGGTAAGTGAGATATAACAA 57.968 33.333 0.00 0.00 43.03 2.83
315 687 8.486210 TGGTAAGTGAGATATAACAATTCTGCT 58.514 33.333 0.00 0.00 0.00 4.24
316 688 9.331282 GGTAAGTGAGATATAACAATTCTGCTT 57.669 33.333 0.00 0.00 0.00 3.91
320 692 8.680903 AGTGAGATATAACAATTCTGCTTTTGG 58.319 33.333 0.00 0.00 0.00 3.28
321 693 8.677300 GTGAGATATAACAATTCTGCTTTTGGA 58.323 33.333 0.00 0.00 0.00 3.53
322 694 9.241919 TGAGATATAACAATTCTGCTTTTGGAA 57.758 29.630 0.00 0.00 0.00 3.53
324 696 9.860898 AGATATAACAATTCTGCTTTTGGAAAC 57.139 29.630 0.00 0.00 0.00 2.78
325 697 9.087424 GATATAACAATTCTGCTTTTGGAAACC 57.913 33.333 0.00 0.00 0.00 3.27
326 698 4.751767 ACAATTCTGCTTTTGGAAACCA 57.248 36.364 0.00 0.00 0.00 3.67
327 699 5.294734 ACAATTCTGCTTTTGGAAACCAT 57.705 34.783 0.00 0.00 31.53 3.55
333 705 6.024552 TCTGCTTTTGGAAACCATATGTTC 57.975 37.500 1.24 0.00 35.67 3.18
338 710 3.992943 TGGAAACCATATGTTCTCGGT 57.007 42.857 1.24 0.00 35.67 4.69
343 715 4.553330 AACCATATGTTCTCGGTGAAGT 57.447 40.909 1.24 0.00 35.01 3.01
350 722 3.921677 TGTTCTCGGTGAAGTTGGATAC 58.078 45.455 0.00 0.00 35.01 2.24
353 725 3.162666 TCTCGGTGAAGTTGGATACTGT 58.837 45.455 0.00 0.00 37.12 3.55
355 727 4.954202 TCTCGGTGAAGTTGGATACTGTAT 59.046 41.667 0.00 0.00 37.12 2.29
357 729 4.707934 TCGGTGAAGTTGGATACTGTATCA 59.292 41.667 24.71 11.49 37.12 2.15
379 751 3.296709 GAAGGTTCGGAGGCGCTCA 62.297 63.158 7.64 0.00 31.08 4.26
435 807 4.070552 GGAAGAGGCCACGTCGCT 62.071 66.667 5.01 0.00 0.00 4.93
436 808 2.507324 GAAGAGGCCACGTCGCTC 60.507 66.667 5.01 0.95 0.00 5.03
437 809 3.991536 GAAGAGGCCACGTCGCTCC 62.992 68.421 5.01 0.00 0.00 4.70
439 811 4.803426 GAGGCCACGTCGCTCCTG 62.803 72.222 5.01 0.00 0.00 3.86
443 815 3.680786 CCACGTCGCTCCTGTCCA 61.681 66.667 0.00 0.00 0.00 4.02
446 818 1.977009 ACGTCGCTCCTGTCCATCA 60.977 57.895 0.00 0.00 0.00 3.07
447 819 1.215382 CGTCGCTCCTGTCCATCAA 59.785 57.895 0.00 0.00 0.00 2.57
448 820 1.078759 CGTCGCTCCTGTCCATCAAC 61.079 60.000 0.00 0.00 0.00 3.18
450 822 1.191489 TCGCTCCTGTCCATCAACCA 61.191 55.000 0.00 0.00 0.00 3.67
451 823 0.742281 CGCTCCTGTCCATCAACCAG 60.742 60.000 0.00 0.00 0.00 4.00
452 824 1.028868 GCTCCTGTCCATCAACCAGC 61.029 60.000 0.00 0.00 0.00 4.85
453 825 0.617413 CTCCTGTCCATCAACCAGCT 59.383 55.000 0.00 0.00 0.00 4.24
456 828 1.081892 CTGTCCATCAACCAGCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
457 829 0.396435 TGTCCATCAACCAGCTTCGT 59.604 50.000 0.00 0.00 0.00 3.85
458 830 1.079503 GTCCATCAACCAGCTTCGTC 58.920 55.000 0.00 0.00 0.00 4.20
460 832 1.066858 TCCATCAACCAGCTTCGTCTC 60.067 52.381 0.00 0.00 0.00 3.36
461 833 0.994995 CATCAACCAGCTTCGTCTCG 59.005 55.000 0.00 0.00 0.00 4.04
462 834 0.603569 ATCAACCAGCTTCGTCTCGT 59.396 50.000 0.00 0.00 0.00 4.18
463 835 0.387929 TCAACCAGCTTCGTCTCGTT 59.612 50.000 0.00 0.00 0.00 3.85
495 867 1.432251 CGCCGAACCGTGTCTATCT 59.568 57.895 0.00 0.00 0.00 1.98
561 944 2.657237 CGAAACCCTGCCGACTCT 59.343 61.111 0.00 0.00 0.00 3.24
562 945 1.738099 CGAAACCCTGCCGACTCTG 60.738 63.158 0.00 0.00 0.00 3.35
595 978 2.770232 GGAAAGAACCCGGGAGAGATAA 59.230 50.000 32.02 0.00 0.00 1.75
596 979 3.181464 GGAAAGAACCCGGGAGAGATAAG 60.181 52.174 32.02 0.00 0.00 1.73
598 981 2.668625 AGAACCCGGGAGAGATAAGAC 58.331 52.381 32.02 5.34 0.00 3.01
599 982 1.337387 GAACCCGGGAGAGATAAGACG 59.663 57.143 32.02 0.00 0.00 4.18
600 983 1.108132 ACCCGGGAGAGATAAGACGC 61.108 60.000 32.02 0.00 0.00 5.19
602 985 1.370657 CGGGAGAGATAAGACGCGC 60.371 63.158 5.73 0.00 32.84 6.86
603 986 1.787057 CGGGAGAGATAAGACGCGCT 61.787 60.000 5.73 0.50 32.84 5.92
604 987 0.039888 GGGAGAGATAAGACGCGCTC 60.040 60.000 5.73 3.10 0.00 5.03
609 992 0.457851 AGATAAGACGCGCTCAAGCT 59.542 50.000 5.73 2.06 39.32 3.74
619 1002 3.406361 CTCAAGCTCGCGCACGTT 61.406 61.111 8.75 0.00 41.18 3.99
621 1004 4.430423 CAAGCTCGCGCACGTTCC 62.430 66.667 8.75 0.00 41.18 3.62
622 1005 4.664677 AAGCTCGCGCACGTTCCT 62.665 61.111 8.75 0.00 41.18 3.36
677 1085 3.991051 CCGTCAGGCGACACCACT 61.991 66.667 0.00 0.00 42.74 4.00
746 1174 0.454957 CATGCAAGCGCCAACTGTAC 60.455 55.000 2.29 0.00 37.32 2.90
747 1175 1.911293 ATGCAAGCGCCAACTGTACG 61.911 55.000 2.29 0.00 37.32 3.67
777 1209 1.146263 CCTCGCCGGCCTAATTCTT 59.854 57.895 23.46 0.00 0.00 2.52
824 1264 3.740128 ATGGCCGCCGATCAGTGTC 62.740 63.158 4.58 0.00 0.00 3.67
830 1270 0.179250 CGCCGATCAGTGTCAAAACG 60.179 55.000 0.00 0.00 0.00 3.60
833 1273 1.148310 CGATCAGTGTCAAAACGCCT 58.852 50.000 0.00 0.00 36.52 5.52
834 1274 2.333926 CGATCAGTGTCAAAACGCCTA 58.666 47.619 0.00 0.00 36.52 3.93
847 1287 1.568504 ACGCCTAGAGGACAAATGGA 58.431 50.000 0.00 0.00 37.39 3.41
954 1410 2.457080 GCACAAGCGACCTACTTCC 58.543 57.895 0.00 0.00 0.00 3.46
955 1411 1.019805 GCACAAGCGACCTACTTCCC 61.020 60.000 0.00 0.00 0.00 3.97
956 1412 0.736325 CACAAGCGACCTACTTCCCG 60.736 60.000 0.00 0.00 0.00 5.14
957 1413 1.153628 CAAGCGACCTACTTCCCGG 60.154 63.158 0.00 0.00 0.00 5.73
958 1414 3.015312 AAGCGACCTACTTCCCGGC 62.015 63.158 0.00 0.00 0.00 6.13
959 1415 3.766691 GCGACCTACTTCCCGGCA 61.767 66.667 0.00 0.00 0.00 5.69
960 1416 3.090219 GCGACCTACTTCCCGGCAT 62.090 63.158 0.00 0.00 0.00 4.40
961 1417 1.067582 CGACCTACTTCCCGGCATC 59.932 63.158 0.00 0.00 0.00 3.91
962 1418 1.067582 GACCTACTTCCCGGCATCG 59.932 63.158 0.00 0.00 0.00 3.84
963 1419 2.280186 CCTACTTCCCGGCATCGC 60.280 66.667 0.00 0.00 34.56 4.58
964 1420 2.499205 CTACTTCCCGGCATCGCA 59.501 61.111 0.00 0.00 34.56 5.10
965 1421 1.592669 CTACTTCCCGGCATCGCAG 60.593 63.158 0.00 0.00 34.56 5.18
966 1422 2.298158 CTACTTCCCGGCATCGCAGT 62.298 60.000 0.00 0.00 34.56 4.40
967 1423 1.038681 TACTTCCCGGCATCGCAGTA 61.039 55.000 0.00 0.00 34.56 2.74
986 1442 3.371087 GCTAGCTAGCTTGGTGGTC 57.629 57.895 33.71 3.73 45.62 4.02
987 1443 0.827368 GCTAGCTAGCTTGGTGGTCT 59.173 55.000 33.71 0.00 45.62 3.85
988 1444 1.202475 GCTAGCTAGCTTGGTGGTCTC 60.202 57.143 33.71 4.79 45.62 3.36
989 1445 2.383855 CTAGCTAGCTTGGTGGTCTCT 58.616 52.381 24.88 0.00 0.00 3.10
1164 1620 0.451383 CTGTCCTCTGCGTCTCTGAG 59.549 60.000 0.00 0.00 39.60 3.35
1168 1624 0.175302 CCTCTGCGTCTCTGAGCAAT 59.825 55.000 0.00 0.00 43.31 3.56
1211 1667 1.220206 CTCCGCTGAATCTGCTGGT 59.780 57.895 16.99 0.00 0.00 4.00
1297 1753 1.079681 CCGCGGTGCAGGTAAGTTA 60.080 57.895 19.50 0.00 0.00 2.24
1311 1786 5.807011 CAGGTAAGTTAAATGCCAATCTTGC 59.193 40.000 0.70 0.00 0.00 4.01
1312 1787 5.480073 AGGTAAGTTAAATGCCAATCTTGCA 59.520 36.000 0.00 0.00 43.97 4.08
1313 1788 5.807011 GGTAAGTTAAATGCCAATCTTGCAG 59.193 40.000 0.00 0.00 42.92 4.41
1314 1789 5.726980 AAGTTAAATGCCAATCTTGCAGA 57.273 34.783 0.00 0.00 42.92 4.26
1315 1790 5.927281 AGTTAAATGCCAATCTTGCAGAT 57.073 34.783 0.00 0.00 42.92 2.90
1316 1791 6.290294 AGTTAAATGCCAATCTTGCAGATT 57.710 33.333 5.80 5.80 45.23 2.40
1317 1792 7.408756 AGTTAAATGCCAATCTTGCAGATTA 57.591 32.000 9.96 0.00 42.67 1.75
1318 1793 7.260603 AGTTAAATGCCAATCTTGCAGATTAC 58.739 34.615 9.96 7.27 42.67 1.89
1319 1794 4.660789 AATGCCAATCTTGCAGATTACC 57.339 40.909 9.96 6.23 42.67 2.85
1320 1795 3.370840 TGCCAATCTTGCAGATTACCT 57.629 42.857 9.96 0.00 42.67 3.08
1321 1796 3.282021 TGCCAATCTTGCAGATTACCTC 58.718 45.455 9.96 3.30 42.67 3.85
1351 1826 3.557595 ACGATTCGAGAAATGCAAGGATC 59.442 43.478 13.95 0.00 0.00 3.36
1365 1842 3.549070 GCAAGGATCGTGAAATGAAATGC 59.451 43.478 0.00 0.00 34.16 3.56
1547 2024 3.057548 CAGCCGCAGCATTGTCCA 61.058 61.111 0.00 0.00 43.56 4.02
1555 2032 1.150536 AGCATTGTCCAACCGGTGT 59.849 52.632 8.52 0.00 0.00 4.16
1623 2100 1.315257 GGCGTCCAATGGCAAGTGAT 61.315 55.000 0.00 0.00 0.00 3.06
1635 2112 1.078143 AAGTGATTCTGCCTCCCGC 60.078 57.895 0.00 0.00 38.31 6.13
1656 2133 0.689623 CTCCACTTTCTGGGCTCAGT 59.310 55.000 14.66 0.00 41.06 3.41
1662 2139 2.972713 ACTTTCTGGGCTCAGTGTTCTA 59.027 45.455 14.66 0.00 41.59 2.10
1665 2142 4.640771 TTCTGGGCTCAGTGTTCTAAAT 57.359 40.909 14.66 0.00 41.59 1.40
1687 2166 6.788598 ATCTCTGATCACTCTGCTTCTTAA 57.211 37.500 0.00 0.00 0.00 1.85
1688 2167 6.788598 TCTCTGATCACTCTGCTTCTTAAT 57.211 37.500 0.00 0.00 0.00 1.40
1689 2168 7.180322 TCTCTGATCACTCTGCTTCTTAATT 57.820 36.000 0.00 0.00 0.00 1.40
1690 2169 7.040494 TCTCTGATCACTCTGCTTCTTAATTG 58.960 38.462 0.00 0.00 0.00 2.32
1691 2170 6.939622 TCTGATCACTCTGCTTCTTAATTGA 58.060 36.000 0.00 0.00 0.00 2.57
1692 2171 7.563020 TCTGATCACTCTGCTTCTTAATTGAT 58.437 34.615 0.00 0.00 0.00 2.57
1693 2172 7.710044 TCTGATCACTCTGCTTCTTAATTGATC 59.290 37.037 0.00 0.00 38.95 2.92
1694 2173 7.563020 TGATCACTCTGCTTCTTAATTGATCT 58.437 34.615 9.08 0.00 39.14 2.75
1695 2174 8.699130 TGATCACTCTGCTTCTTAATTGATCTA 58.301 33.333 9.08 0.00 39.14 1.98
1696 2175 9.709495 GATCACTCTGCTTCTTAATTGATCTAT 57.291 33.333 0.00 0.00 36.66 1.98
1698 2177 9.973450 TCACTCTGCTTCTTAATTGATCTATAC 57.027 33.333 0.00 0.00 0.00 1.47
1699 2178 8.910666 CACTCTGCTTCTTAATTGATCTATACG 58.089 37.037 0.00 0.00 0.00 3.06
1700 2179 7.596995 ACTCTGCTTCTTAATTGATCTATACGC 59.403 37.037 0.00 0.00 0.00 4.42
1701 2180 7.661968 TCTGCTTCTTAATTGATCTATACGCT 58.338 34.615 0.00 0.00 0.00 5.07
1702 2181 7.810282 TCTGCTTCTTAATTGATCTATACGCTC 59.190 37.037 0.00 0.00 0.00 5.03
1754 2233 3.561310 TGTTGTTCAGACATGCAGAACTC 59.439 43.478 19.68 14.83 41.86 3.01
1839 2318 2.008268 AACCAGCTGCAGCAACACAC 62.008 55.000 38.24 9.36 45.16 3.82
1849 2328 0.036388 AGCAACACACCCAGGTATCG 60.036 55.000 0.00 0.00 0.00 2.92
1850 2329 1.024579 GCAACACACCCAGGTATCGG 61.025 60.000 0.00 0.00 0.00 4.18
1851 2330 0.323629 CAACACACCCAGGTATCGGT 59.676 55.000 0.00 0.00 0.00 4.69
1852 2331 1.061546 AACACACCCAGGTATCGGTT 58.938 50.000 0.00 0.00 0.00 4.44
1853 2332 0.611714 ACACACCCAGGTATCGGTTC 59.388 55.000 0.00 0.00 0.00 3.62
1854 2333 0.611200 CACACCCAGGTATCGGTTCA 59.389 55.000 0.00 0.00 0.00 3.18
1855 2334 1.209504 CACACCCAGGTATCGGTTCAT 59.790 52.381 0.00 0.00 0.00 2.57
1856 2335 1.209504 ACACCCAGGTATCGGTTCATG 59.790 52.381 0.00 0.00 0.00 3.07
1857 2336 1.209504 CACCCAGGTATCGGTTCATGT 59.790 52.381 0.00 0.00 0.00 3.21
1888 2371 1.448119 TTTCCATTTCCGCACGCACA 61.448 50.000 0.00 0.00 0.00 4.57
1901 2384 1.277739 CGCACACACAGAGTTGCAG 59.722 57.895 0.00 0.00 35.42 4.41
1921 2404 4.274069 CAGCGAAAACACCATAATCATCG 58.726 43.478 0.00 0.00 0.00 3.84
1971 2471 1.640069 CCGAGCTTCGACGATACGA 59.360 57.895 0.00 0.00 43.74 3.43
1990 2490 1.748122 GCATGGACTGGACTGGCAG 60.748 63.158 14.16 14.16 0.00 4.85
1991 2491 1.681666 CATGGACTGGACTGGCAGT 59.318 57.895 22.26 22.26 0.00 4.40
2051 2551 2.026301 GAGACGATTCCGCTCCCG 59.974 66.667 0.00 0.00 39.95 5.14
2112 2612 7.860373 CGATGGTTAAATTTGTTCTCTGAAACA 59.140 33.333 0.00 0.00 37.37 2.83
2113 2613 9.528018 GATGGTTAAATTTGTTCTCTGAAACAA 57.472 29.630 0.00 11.46 44.98 2.83
2114 2614 8.696410 TGGTTAAATTTGTTCTCTGAAACAAC 57.304 30.769 13.74 3.41 45.98 3.32
2116 2616 8.807581 GGTTAAATTTGTTCTCTGAAACAACTG 58.192 33.333 13.74 0.00 45.98 3.16
2121 2621 9.921637 AATTTGTTCTCTGAAACAACTGTAAAA 57.078 25.926 13.74 3.62 45.98 1.52
2122 2622 8.964420 TTTGTTCTCTGAAACAACTGTAAAAG 57.036 30.769 13.74 0.00 45.98 2.27
2131 2631 5.453567 AACAACTGTAAAAGCTGAATCCC 57.546 39.130 0.00 0.00 0.00 3.85
2132 2632 3.502211 ACAACTGTAAAAGCTGAATCCCG 59.498 43.478 0.00 0.00 0.00 5.14
2183 2687 4.178214 ATGCATTTCGCGCGGGTG 62.178 61.111 31.69 24.80 46.97 4.61
2264 2768 2.485814 GCAGAAACTCAAGGACATGGAC 59.514 50.000 0.00 0.00 0.00 4.02
2273 2777 1.819632 GGACATGGACGGCATCACC 60.820 63.158 0.00 0.00 0.00 4.02
2306 2810 5.738619 TGAGTGCTTCACTTCCAGTTATA 57.261 39.130 0.66 0.00 45.44 0.98
2307 2811 5.479306 TGAGTGCTTCACTTCCAGTTATAC 58.521 41.667 0.66 0.00 45.44 1.47
2308 2812 5.246203 TGAGTGCTTCACTTCCAGTTATACT 59.754 40.000 0.66 0.00 45.44 2.12
2372 2884 4.682859 GCTCTGCTCCTCATATGAACAACT 60.683 45.833 6.90 0.00 0.00 3.16
2375 2887 7.524532 GCTCTGCTCCTCATATGAACAACTATA 60.525 40.741 6.90 0.00 0.00 1.31
2431 2943 0.036732 TGCTGGTGCTAAGGAACCTG 59.963 55.000 0.00 0.00 41.79 4.00
2449 2961 1.053835 TGGAGACCAACCTGACAGCA 61.054 55.000 0.00 0.00 0.00 4.41
2484 2996 1.134965 CATCGTGAGTGTCCCTTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
2504 3016 1.472878 CGAACTCTCCATCCGTTCTCA 59.527 52.381 0.00 0.00 35.95 3.27
2505 3017 2.094700 CGAACTCTCCATCCGTTCTCAA 60.095 50.000 0.00 0.00 35.95 3.02
2576 3089 5.202765 ACAATGGCAATTGACATCCATCTA 58.797 37.500 26.79 0.00 44.48 1.98
2711 4913 9.557061 AAGAAAACTAAACGAGAAAGGAAGTAT 57.443 29.630 0.00 0.00 0.00 2.12
2745 4947 2.958355 TGGCAAGGGAGAAAGAAAGTTG 59.042 45.455 0.00 0.00 0.00 3.16
2784 4990 8.940012 ATATGGGAGGTTGGAATAGAATAGAT 57.060 34.615 0.00 0.00 0.00 1.98
2795 5008 8.430573 TGGAATAGAATAGATAATTGGTCGGA 57.569 34.615 0.00 0.00 0.00 4.55
2901 5219 0.823356 GTGTGATGTGCCCACTGGTT 60.823 55.000 0.00 0.00 35.66 3.67
2912 5230 1.270412 CCCACTGGTTGTTGTAGCGTA 60.270 52.381 0.00 0.00 0.00 4.42
2945 5263 1.202794 TGTGATGTGCTCAGCTTGGAA 60.203 47.619 5.55 0.00 33.51 3.53
2946 5264 1.467734 GTGATGTGCTCAGCTTGGAAG 59.532 52.381 5.55 0.00 33.51 3.46
2949 5267 2.346766 TGTGCTCAGCTTGGAAGAAA 57.653 45.000 0.00 0.00 0.00 2.52
2950 5268 1.949525 TGTGCTCAGCTTGGAAGAAAC 59.050 47.619 0.00 0.00 0.00 2.78
2951 5269 1.949525 GTGCTCAGCTTGGAAGAAACA 59.050 47.619 0.00 0.00 0.00 2.83
2952 5270 2.555757 GTGCTCAGCTTGGAAGAAACAT 59.444 45.455 0.00 0.00 0.00 2.71
2953 5271 3.005155 GTGCTCAGCTTGGAAGAAACATT 59.995 43.478 0.00 0.00 0.00 2.71
2954 5272 3.638160 TGCTCAGCTTGGAAGAAACATTT 59.362 39.130 0.00 0.00 0.00 2.32
3103 5421 1.373590 AAACACCGGGTATGCGCATC 61.374 55.000 29.11 17.89 0.00 3.91
3124 5442 2.855660 TTCTCACGTCGAACTTGTGA 57.144 45.000 0.00 9.70 40.12 3.58
3155 5473 2.125832 TTGGCTAGCCGTACGTGC 60.126 61.111 28.28 16.56 39.42 5.34
3214 5532 1.373497 GAGTGTGCTCTGTGGACGG 60.373 63.158 0.00 0.00 40.08 4.79
3215 5533 2.088674 GAGTGTGCTCTGTGGACGGT 62.089 60.000 0.00 0.00 40.08 4.83
3216 5534 1.664965 GTGTGCTCTGTGGACGGTC 60.665 63.158 0.00 0.00 40.08 4.79
3248 7146 0.683179 TCCGGAAGATCTGAAGCGGA 60.683 55.000 0.00 0.00 0.00 5.54
3253 7151 2.158900 GGAAGATCTGAAGCGGATTGGA 60.159 50.000 0.00 0.00 28.51 3.53
3287 7188 1.896465 TGGGGTTTATTTTTCTGGGCG 59.104 47.619 0.00 0.00 0.00 6.13
3289 7190 1.624487 GGTTTATTTTTCTGGGCGCG 58.376 50.000 0.00 0.00 0.00 6.86
3391 7297 6.100279 ACTGGTTGATCCTGATAAGATTGCTA 59.900 38.462 0.00 0.00 38.33 3.49
3402 7308 3.782889 AAGATTGCTATTTTCCCGCAC 57.217 42.857 0.00 0.00 32.71 5.34
3407 7313 1.436983 GCTATTTTCCCGCACCTCCG 61.437 60.000 0.00 0.00 0.00 4.63
3448 7355 3.801997 CTTGAGGAGCCCCGCCAT 61.802 66.667 0.00 0.00 37.58 4.40
3449 7356 3.764160 CTTGAGGAGCCCCGCCATC 62.764 68.421 0.00 0.00 37.58 3.51
3451 7358 4.554036 GAGGAGCCCCGCCATCAC 62.554 72.222 0.00 0.00 37.58 3.06
3458 7365 4.697756 CCCGCCATCACCACGTGT 62.698 66.667 15.65 0.00 34.79 4.49
3459 7366 3.118454 CCGCCATCACCACGTGTC 61.118 66.667 15.65 0.00 34.79 3.67
3460 7367 3.478394 CGCCATCACCACGTGTCG 61.478 66.667 15.65 4.88 34.79 4.35
3461 7368 3.788766 GCCATCACCACGTGTCGC 61.789 66.667 15.65 2.57 34.79 5.19
3478 7385 2.281761 CGTGCTGGGTGCTTCCTT 60.282 61.111 0.00 0.00 43.37 3.36
3479 7386 2.328099 CGTGCTGGGTGCTTCCTTC 61.328 63.158 0.00 0.00 43.37 3.46
3480 7387 1.228245 GTGCTGGGTGCTTCCTTCA 60.228 57.895 0.00 0.00 43.37 3.02
3481 7388 1.073722 TGCTGGGTGCTTCCTTCAG 59.926 57.895 0.00 0.00 43.37 3.02
3482 7389 1.073897 GCTGGGTGCTTCCTTCAGT 59.926 57.895 0.00 0.00 38.95 3.41
3483 7390 0.538287 GCTGGGTGCTTCCTTCAGTT 60.538 55.000 0.00 0.00 38.95 3.16
3484 7391 1.986882 CTGGGTGCTTCCTTCAGTTT 58.013 50.000 0.00 0.00 36.25 2.66
3485 7392 2.310538 CTGGGTGCTTCCTTCAGTTTT 58.689 47.619 0.00 0.00 36.25 2.43
3486 7393 2.695147 CTGGGTGCTTCCTTCAGTTTTT 59.305 45.455 0.00 0.00 36.25 1.94
3510 7417 7.793907 TTTTTCTGTACGCGTTTTTAACTTT 57.206 28.000 20.78 0.00 0.00 2.66
3511 7418 7.421955 TTTTCTGTACGCGTTTTTAACTTTC 57.578 32.000 20.78 0.00 0.00 2.62
3512 7419 5.715429 TCTGTACGCGTTTTTAACTTTCA 57.285 34.783 20.78 0.00 0.00 2.69
3513 7420 5.730269 TCTGTACGCGTTTTTAACTTTCAG 58.270 37.500 20.78 10.44 0.00 3.02
3514 7421 5.519566 TCTGTACGCGTTTTTAACTTTCAGA 59.480 36.000 20.78 12.40 0.00 3.27
3515 7422 6.201425 TCTGTACGCGTTTTTAACTTTCAGAT 59.799 34.615 20.78 0.00 0.00 2.90
3516 7423 6.130723 TGTACGCGTTTTTAACTTTCAGATG 58.869 36.000 20.78 0.00 0.00 2.90
3517 7424 5.412526 ACGCGTTTTTAACTTTCAGATGA 57.587 34.783 5.58 0.00 0.00 2.92
3518 7425 5.997385 ACGCGTTTTTAACTTTCAGATGAT 58.003 33.333 5.58 0.00 0.00 2.45
3519 7426 6.435428 ACGCGTTTTTAACTTTCAGATGATT 58.565 32.000 5.58 0.00 0.00 2.57
3520 7427 6.915843 ACGCGTTTTTAACTTTCAGATGATTT 59.084 30.769 5.58 0.00 0.00 2.17
3521 7428 7.434013 ACGCGTTTTTAACTTTCAGATGATTTT 59.566 29.630 5.58 0.00 0.00 1.82
3522 7429 8.265998 CGCGTTTTTAACTTTCAGATGATTTTT 58.734 29.630 0.00 0.00 0.00 1.94
3523 7430 9.567917 GCGTTTTTAACTTTCAGATGATTTTTC 57.432 29.630 0.00 0.00 0.00 2.29
3535 7442 9.624697 TTCAGATGATTTTTCTTGTTTTATCGG 57.375 29.630 0.00 0.00 0.00 4.18
3536 7443 7.754924 TCAGATGATTTTTCTTGTTTTATCGGC 59.245 33.333 0.00 0.00 0.00 5.54
3537 7444 7.756722 CAGATGATTTTTCTTGTTTTATCGGCT 59.243 33.333 0.00 0.00 0.00 5.52
3538 7445 8.306761 AGATGATTTTTCTTGTTTTATCGGCTT 58.693 29.630 0.00 0.00 0.00 4.35
3539 7446 8.831715 ATGATTTTTCTTGTTTTATCGGCTTT 57.168 26.923 0.00 0.00 0.00 3.51
3540 7447 8.655651 TGATTTTTCTTGTTTTATCGGCTTTT 57.344 26.923 0.00 0.00 0.00 2.27
3541 7448 8.760569 TGATTTTTCTTGTTTTATCGGCTTTTC 58.239 29.630 0.00 0.00 0.00 2.29
3542 7449 6.741448 TTTTCTTGTTTTATCGGCTTTTCG 57.259 33.333 0.00 0.00 0.00 3.46
3543 7450 3.817238 TCTTGTTTTATCGGCTTTTCGC 58.183 40.909 0.00 0.00 38.13 4.70
3544 7451 3.500680 TCTTGTTTTATCGGCTTTTCGCT 59.499 39.130 0.00 0.00 39.13 4.93
3545 7452 3.907894 TGTTTTATCGGCTTTTCGCTT 57.092 38.095 0.00 0.00 39.13 4.68
3546 7453 4.231718 TGTTTTATCGGCTTTTCGCTTT 57.768 36.364 0.00 0.00 39.13 3.51
3547 7454 4.612943 TGTTTTATCGGCTTTTCGCTTTT 58.387 34.783 0.00 0.00 39.13 2.27
3548 7455 5.044558 TGTTTTATCGGCTTTTCGCTTTTT 58.955 33.333 0.00 0.00 39.13 1.94
3570 7477 5.799827 TTCCTTGTTTTCCATAGGTTTGG 57.200 39.130 0.00 0.00 38.18 3.28
3571 7478 5.068215 TCCTTGTTTTCCATAGGTTTGGA 57.932 39.130 0.00 0.00 44.08 3.53
3620 7527 6.916360 AAAAAGGAAATTATGAGAGGCACA 57.084 33.333 0.00 0.00 0.00 4.57
3621 7528 6.521151 AAAAGGAAATTATGAGAGGCACAG 57.479 37.500 0.00 0.00 0.00 3.66
3622 7529 5.441718 AAGGAAATTATGAGAGGCACAGA 57.558 39.130 0.00 0.00 0.00 3.41
3623 7530 5.643421 AGGAAATTATGAGAGGCACAGAT 57.357 39.130 0.00 0.00 0.00 2.90
3624 7531 6.011122 AGGAAATTATGAGAGGCACAGATT 57.989 37.500 0.00 0.00 0.00 2.40
3625 7532 6.430007 AGGAAATTATGAGAGGCACAGATTT 58.570 36.000 0.00 0.00 0.00 2.17
3626 7533 6.320672 AGGAAATTATGAGAGGCACAGATTTG 59.679 38.462 0.00 0.00 0.00 2.32
3627 7534 5.511234 AATTATGAGAGGCACAGATTTGC 57.489 39.130 0.00 0.00 42.18 3.68
3628 7535 2.803030 ATGAGAGGCACAGATTTGCT 57.197 45.000 0.00 0.00 42.56 3.91
3629 7536 2.574006 TGAGAGGCACAGATTTGCTT 57.426 45.000 0.00 0.00 42.56 3.91
3630 7537 2.430465 TGAGAGGCACAGATTTGCTTC 58.570 47.619 0.00 0.00 46.31 3.86
3631 7538 1.742268 GAGAGGCACAGATTTGCTTCC 59.258 52.381 3.83 0.00 46.96 3.46
3632 7539 0.449388 GAGGCACAGATTTGCTTCCG 59.551 55.000 0.00 0.00 41.54 4.30
3633 7540 1.153958 GGCACAGATTTGCTTCCGC 60.154 57.895 0.00 0.00 42.56 5.54
3634 7541 1.153958 GCACAGATTTGCTTCCGCC 60.154 57.895 0.00 0.00 39.59 6.13
3635 7542 1.865788 GCACAGATTTGCTTCCGCCA 61.866 55.000 0.00 0.00 39.59 5.69
3636 7543 0.169672 CACAGATTTGCTTCCGCCAG 59.830 55.000 0.00 0.00 34.43 4.85
3637 7544 0.962356 ACAGATTTGCTTCCGCCAGG 60.962 55.000 0.00 0.00 39.46 4.45
3638 7545 1.379044 AGATTTGCTTCCGCCAGGG 60.379 57.895 0.00 0.00 38.33 4.45
3639 7546 2.362889 ATTTGCTTCCGCCAGGGG 60.363 61.111 0.00 0.00 38.33 4.79
3650 7557 2.753043 CCAGGGGCACAGTCATGC 60.753 66.667 0.00 0.00 45.34 4.06
3656 7563 3.791539 GCACAGTCATGCCTCTCG 58.208 61.111 0.00 0.00 39.86 4.04
3657 7564 1.812922 GCACAGTCATGCCTCTCGG 60.813 63.158 0.00 0.00 39.86 4.63
3658 7565 1.893062 CACAGTCATGCCTCTCGGA 59.107 57.895 0.00 0.00 0.00 4.55
3659 7566 0.247460 CACAGTCATGCCTCTCGGAA 59.753 55.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.038162 GGCAAAGATATACCTCGAGTCACT 59.962 45.833 12.31 0.00 0.00 3.41
1 2 4.299978 GGCAAAGATATACCTCGAGTCAC 58.700 47.826 12.31 0.00 0.00 3.67
87 91 2.560981 TCTATGTTGCCTCGTGTCTGAA 59.439 45.455 0.00 0.00 0.00 3.02
88 92 2.094700 GTCTATGTTGCCTCGTGTCTGA 60.095 50.000 0.00 0.00 0.00 3.27
115 119 1.203928 CGGCTACTGCGATCAAAGAG 58.796 55.000 0.00 0.00 40.82 2.85
117 121 1.154205 CCCGGCTACTGCGATCAAAG 61.154 60.000 0.00 0.00 40.82 2.77
118 122 1.153449 CCCGGCTACTGCGATCAAA 60.153 57.895 0.00 0.00 40.82 2.69
119 123 1.399744 ATCCCGGCTACTGCGATCAA 61.400 55.000 0.00 0.00 40.82 2.57
120 124 1.399744 AATCCCGGCTACTGCGATCA 61.400 55.000 0.00 0.00 40.82 2.92
121 125 0.601558 TAATCCCGGCTACTGCGATC 59.398 55.000 0.00 0.00 40.82 3.69
123 127 0.103572 GTTAATCCCGGCTACTGCGA 59.896 55.000 0.00 0.00 40.82 5.10
124 128 0.104304 AGTTAATCCCGGCTACTGCG 59.896 55.000 0.00 0.00 40.82 5.18
125 129 2.327200 AAGTTAATCCCGGCTACTGC 57.673 50.000 0.00 0.00 38.76 4.40
127 131 4.563140 TCAAAAGTTAATCCCGGCTACT 57.437 40.909 0.00 0.00 0.00 2.57
128 132 5.392703 CCTTTCAAAAGTTAATCCCGGCTAC 60.393 44.000 0.00 0.00 34.20 3.58
130 134 3.509967 CCTTTCAAAAGTTAATCCCGGCT 59.490 43.478 0.00 0.00 34.20 5.52
131 135 3.508402 TCCTTTCAAAAGTTAATCCCGGC 59.492 43.478 0.00 0.00 34.20 6.13
132 136 5.185056 ACATCCTTTCAAAAGTTAATCCCGG 59.815 40.000 0.00 0.00 34.20 5.73
134 138 6.398095 CCACATCCTTTCAAAAGTTAATCCC 58.602 40.000 2.09 0.00 34.20 3.85
135 139 6.014584 ACCCACATCCTTTCAAAAGTTAATCC 60.015 38.462 2.09 0.00 34.20 3.01
137 141 6.994421 ACCCACATCCTTTCAAAAGTTAAT 57.006 33.333 2.09 0.00 34.20 1.40
138 142 7.899648 TTACCCACATCCTTTCAAAAGTTAA 57.100 32.000 2.09 0.00 34.20 2.01
139 143 7.899648 TTTACCCACATCCTTTCAAAAGTTA 57.100 32.000 2.09 0.00 34.20 2.24
140 144 6.800072 TTTACCCACATCCTTTCAAAAGTT 57.200 33.333 2.09 0.00 34.20 2.66
143 147 6.780031 TGAGATTTACCCACATCCTTTCAAAA 59.220 34.615 0.00 0.00 0.00 2.44
144 148 6.310941 TGAGATTTACCCACATCCTTTCAAA 58.689 36.000 0.00 0.00 0.00 2.69
146 150 5.014123 ACTGAGATTTACCCACATCCTTTCA 59.986 40.000 0.00 0.00 0.00 2.69
147 151 5.501156 ACTGAGATTTACCCACATCCTTTC 58.499 41.667 0.00 0.00 0.00 2.62
149 153 4.383118 CGACTGAGATTTACCCACATCCTT 60.383 45.833 0.00 0.00 0.00 3.36
150 154 3.133003 CGACTGAGATTTACCCACATCCT 59.867 47.826 0.00 0.00 0.00 3.24
151 155 3.132289 TCGACTGAGATTTACCCACATCC 59.868 47.826 0.00 0.00 0.00 3.51
152 156 4.142138 ACTCGACTGAGATTTACCCACATC 60.142 45.833 0.00 0.00 45.57 3.06
155 159 3.444388 AGACTCGACTGAGATTTACCCAC 59.556 47.826 0.00 0.00 45.57 4.61
158 162 4.966965 TCAGACTCGACTGAGATTTACC 57.033 45.455 1.80 0.00 45.57 2.85
166 170 3.752222 GGTTAAGTCTCAGACTCGACTGA 59.248 47.826 8.09 5.69 42.59 3.41
167 171 3.502595 TGGTTAAGTCTCAGACTCGACTG 59.497 47.826 8.09 0.00 42.59 3.51
169 173 4.023021 ACTTGGTTAAGTCTCAGACTCGAC 60.023 45.833 8.09 9.68 43.53 4.20
170 174 4.142790 ACTTGGTTAAGTCTCAGACTCGA 58.857 43.478 8.09 0.00 43.53 4.04
171 175 4.506886 ACTTGGTTAAGTCTCAGACTCG 57.493 45.455 8.09 0.00 43.53 4.18
182 186 9.665264 GTCATTTTAACTTCAGACTTGGTTAAG 57.335 33.333 0.00 0.00 36.15 1.85
183 187 9.179909 TGTCATTTTAACTTCAGACTTGGTTAA 57.820 29.630 0.00 0.00 33.95 2.01
184 188 8.740123 TGTCATTTTAACTTCAGACTTGGTTA 57.260 30.769 0.00 0.00 0.00 2.85
185 189 7.639113 TGTCATTTTAACTTCAGACTTGGTT 57.361 32.000 0.00 0.00 0.00 3.67
186 190 7.639113 TTGTCATTTTAACTTCAGACTTGGT 57.361 32.000 0.00 0.00 0.00 3.67
187 191 8.807581 GTTTTGTCATTTTAACTTCAGACTTGG 58.192 33.333 0.00 0.00 0.00 3.61
188 192 9.352784 TGTTTTGTCATTTTAACTTCAGACTTG 57.647 29.630 0.00 0.00 0.00 3.16
244 248 8.755977 AGTGAAGATCCATGCAAGATTTTATTT 58.244 29.630 4.28 0.00 0.00 1.40
249 253 7.395489 ACTTAAGTGAAGATCCATGCAAGATTT 59.605 33.333 7.48 0.00 38.65 2.17
253 257 7.307042 CGATACTTAAGTGAAGATCCATGCAAG 60.307 40.741 18.56 0.00 38.65 4.01
256 260 6.144724 GTCGATACTTAAGTGAAGATCCATGC 59.855 42.308 18.56 0.00 38.65 4.06
257 261 7.380870 CAGTCGATACTTAAGTGAAGATCCATG 59.619 40.741 18.56 6.85 38.65 3.66
258 262 7.285629 TCAGTCGATACTTAAGTGAAGATCCAT 59.714 37.037 18.56 0.53 38.65 3.41
259 263 6.602009 TCAGTCGATACTTAAGTGAAGATCCA 59.398 38.462 18.56 0.00 38.65 3.41
260 264 7.012515 TCTCAGTCGATACTTAAGTGAAGATCC 59.987 40.741 18.56 2.09 38.65 3.36
261 265 7.853929 GTCTCAGTCGATACTTAAGTGAAGATC 59.146 40.741 18.56 11.52 38.65 2.75
264 268 7.079182 AGTCTCAGTCGATACTTAAGTGAAG 57.921 40.000 18.56 8.75 41.37 3.02
267 271 6.030849 CCAAGTCTCAGTCGATACTTAAGTG 58.969 44.000 18.56 1.62 36.67 3.16
271 643 6.883217 ACTTACCAAGTCTCAGTCGATACTTA 59.117 38.462 0.00 0.00 36.67 2.24
276 648 4.079970 TCACTTACCAAGTCTCAGTCGAT 58.920 43.478 0.00 0.00 40.46 3.59
277 649 3.483421 TCACTTACCAAGTCTCAGTCGA 58.517 45.455 0.00 0.00 40.46 4.20
282 654 8.589701 TGTTATATCTCACTTACCAAGTCTCA 57.410 34.615 0.00 0.00 40.46 3.27
290 662 8.894768 AGCAGAATTGTTATATCTCACTTACC 57.105 34.615 0.00 0.00 0.00 2.85
295 667 8.677300 TCCAAAAGCAGAATTGTTATATCTCAC 58.323 33.333 0.00 0.00 0.00 3.51
296 668 8.806429 TCCAAAAGCAGAATTGTTATATCTCA 57.194 30.769 0.00 0.00 0.00 3.27
300 672 8.592809 TGGTTTCCAAAAGCAGAATTGTTATAT 58.407 29.630 0.50 0.00 0.00 0.86
301 673 7.957002 TGGTTTCCAAAAGCAGAATTGTTATA 58.043 30.769 0.50 0.00 0.00 0.98
303 675 6.227298 TGGTTTCCAAAAGCAGAATTGTTA 57.773 33.333 0.50 0.00 0.00 2.41
304 676 5.096443 TGGTTTCCAAAAGCAGAATTGTT 57.904 34.783 0.50 0.00 0.00 2.83
306 678 6.875195 ACATATGGTTTCCAAAAGCAGAATTG 59.125 34.615 7.80 4.93 36.95 2.32
308 680 6.610075 ACATATGGTTTCCAAAAGCAGAAT 57.390 33.333 7.80 4.22 36.95 2.40
309 681 6.267471 AGAACATATGGTTTCCAAAAGCAGAA 59.733 34.615 7.80 2.33 40.63 3.02
310 682 5.774690 AGAACATATGGTTTCCAAAAGCAGA 59.225 36.000 7.80 6.03 40.63 4.26
311 683 6.029346 AGAACATATGGTTTCCAAAAGCAG 57.971 37.500 7.80 0.63 40.63 4.24
313 685 5.095490 CGAGAACATATGGTTTCCAAAAGC 58.905 41.667 7.80 0.00 40.63 3.51
315 687 5.048364 CACCGAGAACATATGGTTTCCAAAA 60.048 40.000 7.80 0.00 40.63 2.44
316 688 4.457603 CACCGAGAACATATGGTTTCCAAA 59.542 41.667 7.80 0.00 40.63 3.28
317 689 4.006989 CACCGAGAACATATGGTTTCCAA 58.993 43.478 7.80 0.00 40.63 3.53
318 690 3.262151 TCACCGAGAACATATGGTTTCCA 59.738 43.478 7.80 0.00 40.63 3.53
319 691 3.869065 TCACCGAGAACATATGGTTTCC 58.131 45.455 7.80 0.00 40.63 3.13
320 692 4.935808 ACTTCACCGAGAACATATGGTTTC 59.064 41.667 7.80 4.29 40.63 2.78
321 693 4.906618 ACTTCACCGAGAACATATGGTTT 58.093 39.130 7.80 0.00 40.63 3.27
322 694 4.553330 ACTTCACCGAGAACATATGGTT 57.447 40.909 7.80 0.00 44.10 3.67
323 695 4.253685 CAACTTCACCGAGAACATATGGT 58.746 43.478 7.80 0.00 34.29 3.55
324 696 3.623060 CCAACTTCACCGAGAACATATGG 59.377 47.826 7.80 0.00 31.61 2.74
325 697 4.503910 TCCAACTTCACCGAGAACATATG 58.496 43.478 0.00 0.00 31.61 1.78
326 698 4.819105 TCCAACTTCACCGAGAACATAT 57.181 40.909 0.00 0.00 31.61 1.78
327 699 4.819105 ATCCAACTTCACCGAGAACATA 57.181 40.909 0.00 0.00 31.61 2.29
333 705 3.594603 ACAGTATCCAACTTCACCGAG 57.405 47.619 0.00 0.00 35.76 4.63
338 710 7.718334 TCTTCTGATACAGTATCCAACTTCA 57.282 36.000 16.62 0.00 35.76 3.02
343 715 7.496346 AACCTTCTTCTGATACAGTATCCAA 57.504 36.000 16.62 9.27 34.26 3.53
350 722 4.440802 CCTCCGAACCTTCTTCTGATACAG 60.441 50.000 0.00 0.00 0.00 2.74
353 725 2.431057 GCCTCCGAACCTTCTTCTGATA 59.569 50.000 0.00 0.00 0.00 2.15
355 727 0.608640 GCCTCCGAACCTTCTTCTGA 59.391 55.000 0.00 0.00 0.00 3.27
357 729 1.592223 CGCCTCCGAACCTTCTTCT 59.408 57.895 0.00 0.00 36.29 2.85
435 807 1.003580 GAAGCTGGTTGATGGACAGGA 59.996 52.381 0.00 0.00 32.98 3.86
436 808 1.457346 GAAGCTGGTTGATGGACAGG 58.543 55.000 0.00 0.00 32.98 4.00
437 809 1.081892 CGAAGCTGGTTGATGGACAG 58.918 55.000 0.00 0.00 35.40 3.51
438 810 0.396435 ACGAAGCTGGTTGATGGACA 59.604 50.000 0.00 0.00 0.00 4.02
439 811 1.079503 GACGAAGCTGGTTGATGGAC 58.920 55.000 0.00 0.00 0.00 4.02
442 814 0.994995 CGAGACGAAGCTGGTTGATG 59.005 55.000 0.00 0.00 0.00 3.07
443 815 0.603569 ACGAGACGAAGCTGGTTGAT 59.396 50.000 0.00 0.00 0.00 2.57
446 818 0.674534 AGAACGAGACGAAGCTGGTT 59.325 50.000 0.00 0.00 39.14 3.67
447 819 0.241481 GAGAACGAGACGAAGCTGGT 59.759 55.000 0.00 0.00 0.00 4.00
448 820 0.794981 CGAGAACGAGACGAAGCTGG 60.795 60.000 0.00 0.00 42.66 4.85
450 822 0.110147 CACGAGAACGAGACGAAGCT 60.110 55.000 0.00 0.00 42.66 3.74
451 823 1.066114 CCACGAGAACGAGACGAAGC 61.066 60.000 0.00 0.00 42.66 3.86
452 824 0.516001 TCCACGAGAACGAGACGAAG 59.484 55.000 0.00 0.00 42.66 3.79
453 825 0.236711 GTCCACGAGAACGAGACGAA 59.763 55.000 0.00 0.00 42.66 3.85
456 828 0.168568 GGAGTCCACGAGAACGAGAC 59.831 60.000 3.60 0.00 42.06 3.36
457 829 1.296755 CGGAGTCCACGAGAACGAGA 61.297 60.000 10.49 0.00 42.66 4.04
458 830 1.134901 CGGAGTCCACGAGAACGAG 59.865 63.158 10.49 0.00 42.66 4.18
460 832 2.504244 GCGGAGTCCACGAGAACG 60.504 66.667 10.49 0.00 45.75 3.95
461 833 2.504244 CGCGGAGTCCACGAGAAC 60.504 66.667 14.50 0.00 32.84 3.01
462 834 4.415332 GCGCGGAGTCCACGAGAA 62.415 66.667 23.39 0.00 32.84 2.87
508 880 2.746277 GGCACGGCTCGTTTCCAT 60.746 61.111 0.00 0.00 38.32 3.41
509 881 3.936203 AGGCACGGCTCGTTTCCA 61.936 61.111 13.97 0.00 38.32 3.53
510 882 3.423154 CAGGCACGGCTCGTTTCC 61.423 66.667 0.00 3.30 38.32 3.13
613 996 4.452733 CGGGAGGGAGGAACGTGC 62.453 72.222 0.00 0.00 0.00 5.34
777 1209 0.606944 ACGTTATTCTTGGCGGCCAA 60.607 50.000 30.88 30.88 41.69 4.52
824 1264 3.119849 CCATTTGTCCTCTAGGCGTTTTG 60.120 47.826 0.00 0.00 34.44 2.44
830 1270 4.511826 CGTAAATCCATTTGTCCTCTAGGC 59.488 45.833 0.00 0.00 34.44 3.93
833 1273 4.116961 CGCGTAAATCCATTTGTCCTCTA 58.883 43.478 0.00 0.00 0.00 2.43
834 1274 2.936498 CGCGTAAATCCATTTGTCCTCT 59.064 45.455 0.00 0.00 0.00 3.69
868 1308 0.956902 TATATAGACTCCGCCGCGCA 60.957 55.000 8.75 0.00 0.00 6.09
943 1399 1.067582 GATGCCGGGAAGTAGGTCG 59.932 63.158 0.00 0.00 0.00 4.79
950 1406 1.592669 CTACTGCGATGCCGGGAAG 60.593 63.158 0.00 0.00 36.06 3.46
951 1407 2.499205 CTACTGCGATGCCGGGAA 59.501 61.111 0.00 0.00 36.06 3.97
952 1408 4.221422 GCTACTGCGATGCCGGGA 62.221 66.667 2.18 0.00 36.06 5.14
953 1409 2.755542 CTAGCTACTGCGATGCCGGG 62.756 65.000 2.18 0.00 45.42 5.73
954 1410 1.372251 CTAGCTACTGCGATGCCGG 60.372 63.158 0.00 0.00 45.42 6.13
955 1411 2.018866 GCTAGCTACTGCGATGCCG 61.019 63.158 7.70 0.00 45.42 5.69
956 1412 0.598562 TAGCTAGCTACTGCGATGCC 59.401 55.000 20.67 0.00 45.42 4.40
957 1413 1.975837 CTAGCTAGCTACTGCGATGC 58.024 55.000 20.67 0.00 45.42 3.91
958 1414 1.975837 GCTAGCTAGCTACTGCGATG 58.024 55.000 33.71 10.13 45.62 3.84
981 1437 1.561643 TGATCCACCAGAGAGACCAC 58.438 55.000 0.00 0.00 0.00 4.16
986 1442 0.249784 CGCCATGATCCACCAGAGAG 60.250 60.000 0.00 0.00 0.00 3.20
987 1443 1.689243 CCGCCATGATCCACCAGAGA 61.689 60.000 0.00 0.00 0.00 3.10
988 1444 1.227764 CCGCCATGATCCACCAGAG 60.228 63.158 0.00 0.00 0.00 3.35
989 1445 1.688884 TCCGCCATGATCCACCAGA 60.689 57.895 0.00 0.00 0.00 3.86
1056 1512 0.911769 TGATGGTGTAGGGCTTCCTG 59.088 55.000 0.00 0.00 41.87 3.86
1104 1560 4.785512 AGGAAGCGCTCGTGCTCG 62.786 66.667 12.06 0.81 46.60 5.03
1164 1620 5.517054 CGGAGTTTCAGACTTACTAGATTGC 59.483 44.000 0.00 0.00 39.19 3.56
1168 1624 6.095160 GGATTCGGAGTTTCAGACTTACTAGA 59.905 42.308 0.00 0.00 39.19 2.43
1211 1667 1.265635 CTGGAAAACCGCACGAAATGA 59.734 47.619 0.00 0.00 0.00 2.57
1311 1786 2.798680 CGTCAGAACGGAGGTAATCTG 58.201 52.381 0.00 0.00 45.21 2.90
1351 1826 5.367563 CACAATGTTGCATTTCATTTCACG 58.632 37.500 8.77 0.00 32.85 4.35
1365 1842 2.717580 ATCTGCAGTGCACAATGTTG 57.282 45.000 21.04 9.23 33.79 3.33
1394 1871 0.966179 TGAGGAAGTACTTCTGCGCA 59.034 50.000 29.66 20.44 39.45 6.09
1397 1874 3.591023 GACCTTGAGGAAGTACTTCTGC 58.409 50.000 29.66 22.39 39.45 4.26
1547 2024 0.464916 GACCCTGAACAACACCGGTT 60.465 55.000 2.97 0.00 37.87 4.44
1555 2032 2.738480 CGACGGGACCCTGAACAA 59.262 61.111 9.41 0.00 0.00 2.83
1604 2081 1.315257 ATCACTTGCCATTGGACGCC 61.315 55.000 6.95 0.00 0.00 5.68
1656 2133 6.154192 AGCAGAGTGATCAGAGATTTAGAACA 59.846 38.462 0.00 0.00 0.00 3.18
1662 2139 5.680594 AGAAGCAGAGTGATCAGAGATTT 57.319 39.130 0.00 0.00 0.00 2.17
1665 2142 6.788598 ATTAAGAAGCAGAGTGATCAGAGA 57.211 37.500 0.00 0.00 0.00 3.10
1690 2169 9.018716 CATGTTAGATCAATGAGCGTATAGATC 57.981 37.037 0.00 0.00 35.45 2.75
1691 2170 7.978414 CCATGTTAGATCAATGAGCGTATAGAT 59.022 37.037 0.00 0.00 0.00 1.98
1692 2171 7.315890 CCATGTTAGATCAATGAGCGTATAGA 58.684 38.462 0.00 0.00 0.00 1.98
1693 2172 6.533012 CCCATGTTAGATCAATGAGCGTATAG 59.467 42.308 0.00 0.00 0.00 1.31
1694 2173 6.210584 TCCCATGTTAGATCAATGAGCGTATA 59.789 38.462 0.00 0.00 0.00 1.47
1695 2174 5.012046 TCCCATGTTAGATCAATGAGCGTAT 59.988 40.000 0.00 0.00 0.00 3.06
1696 2175 4.343814 TCCCATGTTAGATCAATGAGCGTA 59.656 41.667 0.00 0.00 0.00 4.42
1697 2176 3.134623 TCCCATGTTAGATCAATGAGCGT 59.865 43.478 0.00 0.00 0.00 5.07
1698 2177 3.732212 TCCCATGTTAGATCAATGAGCG 58.268 45.455 0.00 0.00 0.00 5.03
1699 2178 4.514441 CACTCCCATGTTAGATCAATGAGC 59.486 45.833 0.00 0.00 0.00 4.26
1700 2179 5.526479 CACACTCCCATGTTAGATCAATGAG 59.474 44.000 0.00 0.00 0.00 2.90
1701 2180 5.430886 CACACTCCCATGTTAGATCAATGA 58.569 41.667 0.00 0.00 0.00 2.57
1702 2181 4.036027 GCACACTCCCATGTTAGATCAATG 59.964 45.833 0.00 0.00 0.00 2.82
1839 2318 1.762957 AGACATGAACCGATACCTGGG 59.237 52.381 0.00 0.00 0.00 4.45
1880 2361 1.010797 CAACTCTGTGTGTGCGTGC 60.011 57.895 0.00 0.00 0.00 5.34
1888 2371 1.064060 GTTTTCGCTGCAACTCTGTGT 59.936 47.619 0.00 0.00 0.00 3.72
1901 2384 4.273005 ACGATGATTATGGTGTTTTCGC 57.727 40.909 0.00 0.00 0.00 4.70
1921 2404 2.762535 TGAGCTGCCACCTAAGTAAC 57.237 50.000 0.00 0.00 0.00 2.50
1971 2471 2.194388 CTGCCAGTCCAGTCCATGCT 62.194 60.000 0.00 0.00 0.00 3.79
1990 2490 3.730761 CTTCGCCTGTGCTGCCAC 61.731 66.667 0.00 0.00 42.40 5.01
2024 2524 2.968330 GAATCGTCTCGTCCTCCGCG 62.968 65.000 0.00 0.00 36.19 6.46
2027 2527 1.355916 CGGAATCGTCTCGTCCTCC 59.644 63.158 0.00 0.00 0.00 4.30
2051 2551 0.167251 CATGTTTACCCGGCGACAAC 59.833 55.000 9.30 5.99 0.00 3.32
2060 2560 4.220602 AGGCAAAAGATGACATGTTTACCC 59.779 41.667 18.84 16.58 40.75 3.69
2112 2612 3.751518 ACGGGATTCAGCTTTTACAGTT 58.248 40.909 0.00 0.00 0.00 3.16
2113 2613 3.418684 ACGGGATTCAGCTTTTACAGT 57.581 42.857 0.00 0.00 0.00 3.55
2114 2614 4.215399 TGAAACGGGATTCAGCTTTTACAG 59.785 41.667 0.00 0.00 34.50 2.74
2116 2616 4.759516 TGAAACGGGATTCAGCTTTTAC 57.240 40.909 0.00 0.00 34.50 2.01
2118 2618 4.871933 ATTGAAACGGGATTCAGCTTTT 57.128 36.364 0.00 0.00 40.21 2.27
2121 2621 3.193479 GGAAATTGAAACGGGATTCAGCT 59.807 43.478 0.00 0.00 40.21 4.24
2122 2622 3.193479 AGGAAATTGAAACGGGATTCAGC 59.807 43.478 0.00 0.00 40.21 4.26
2131 2631 1.665735 CGGCACCAGGAAATTGAAACG 60.666 52.381 0.00 0.00 0.00 3.60
2132 2632 1.339929 ACGGCACCAGGAAATTGAAAC 59.660 47.619 0.00 0.00 0.00 2.78
2273 2777 0.597637 AAGCACTCACCGTCTTCACG 60.598 55.000 0.00 0.00 46.29 4.35
2306 2810 6.348540 GCGAATGGTCATACTGAAGAAAAAGT 60.349 38.462 0.00 0.00 0.00 2.66
2307 2811 6.024049 GCGAATGGTCATACTGAAGAAAAAG 58.976 40.000 0.00 0.00 0.00 2.27
2308 2812 5.471797 TGCGAATGGTCATACTGAAGAAAAA 59.528 36.000 0.00 0.00 0.00 1.94
2333 2845 2.102252 CAGAGCAGGGGAGACTGAATAC 59.898 54.545 0.00 0.00 40.97 1.89
2372 2884 9.973450 GTGACAGAGCTTTCTTAATCAGATATA 57.027 33.333 0.00 0.00 0.00 0.86
2375 2887 5.809562 CGTGACAGAGCTTTCTTAATCAGAT 59.190 40.000 0.00 0.00 0.00 2.90
2431 2943 0.603975 GTGCTGTCAGGTTGGTCTCC 60.604 60.000 1.14 0.00 0.00 3.71
2449 2961 0.036010 CGATGGGCTCAAACTGAGGT 60.036 55.000 0.00 0.00 44.43 3.85
2484 2996 1.472878 TGAGAACGGATGGAGAGTTCG 59.527 52.381 2.51 0.00 46.19 3.95
2528 3040 9.439500 GTACATGGTAAGTTGGTAACTGAATAA 57.561 33.333 0.00 0.00 41.91 1.40
2576 3089 3.096092 ACACCACAGAACAAACACCAAT 58.904 40.909 0.00 0.00 0.00 3.16
2711 4913 1.212688 CCTTGCCATCCATGTCACCTA 59.787 52.381 0.00 0.00 0.00 3.08
2745 4947 2.435805 TCCCATATCTGGTCTTCAGTGC 59.564 50.000 0.00 0.00 43.76 4.40
2784 4990 6.016192 GTCATATCTCTCTGTCCGACCAATTA 60.016 42.308 0.00 0.00 0.00 1.40
2785 4991 4.895889 TCATATCTCTCTGTCCGACCAATT 59.104 41.667 0.00 0.00 0.00 2.32
2901 5219 3.737266 GCAAGTACAAGTACGCTACAACA 59.263 43.478 4.85 0.00 40.80 3.33
2912 5230 3.058016 GCACATCACATGCAAGTACAAGT 60.058 43.478 0.00 0.00 42.88 3.16
2989 5307 4.328712 CCAAACGCCAAGGCAAAATTATAC 59.671 41.667 12.19 0.00 42.06 1.47
3103 5421 3.049912 TCACAAGTTCGACGTGAGAATG 58.950 45.455 0.00 0.00 34.83 2.67
3124 5442 4.041917 CCAAGCGCGGCACACAAT 62.042 61.111 8.83 0.00 0.00 2.71
3212 5530 1.459592 CGGAGTGTGCTAAAAAGACCG 59.540 52.381 0.00 0.00 0.00 4.79
3214 5532 2.762745 TCCGGAGTGTGCTAAAAAGAC 58.237 47.619 0.00 0.00 0.00 3.01
3215 5533 3.070446 TCTTCCGGAGTGTGCTAAAAAGA 59.930 43.478 3.34 0.00 0.00 2.52
3216 5534 3.399330 TCTTCCGGAGTGTGCTAAAAAG 58.601 45.455 3.34 0.00 0.00 2.27
3248 7146 3.094572 CCATTCAAGAGCCAAGTCCAAT 58.905 45.455 0.00 0.00 0.00 3.16
3253 7151 0.779997 ACCCCATTCAAGAGCCAAGT 59.220 50.000 0.00 0.00 0.00 3.16
3287 7188 1.153647 GGCCCAGCAAATAAACCGC 60.154 57.895 0.00 0.00 0.00 5.68
3289 7190 0.892063 TTCGGCCCAGCAAATAAACC 59.108 50.000 0.00 0.00 0.00 3.27
3357 7263 4.125703 CAGGATCAACCAGTAAGCTCATC 58.874 47.826 0.00 0.00 42.04 2.92
3407 7313 6.852858 GAGTATCCTTGATTAGTTGCTTCC 57.147 41.667 0.00 0.00 0.00 3.46
3444 7351 3.788766 GCGACACGTGGTGATGGC 61.789 66.667 21.57 7.83 36.96 4.40
3445 7352 3.478394 CGCGACACGTGGTGATGG 61.478 66.667 21.57 0.65 36.96 3.51
3464 7371 0.538287 AACTGAAGGAAGCACCCAGC 60.538 55.000 0.00 0.00 46.19 4.85
3465 7372 1.986882 AAACTGAAGGAAGCACCCAG 58.013 50.000 0.00 0.00 40.05 4.45
3466 7373 2.452600 AAAACTGAAGGAAGCACCCA 57.547 45.000 0.00 0.00 40.05 4.51
3486 7393 7.536622 TGAAAGTTAAAAACGCGTACAGAAAAA 59.463 29.630 14.46 0.00 36.23 1.94
3487 7394 7.020010 TGAAAGTTAAAAACGCGTACAGAAAA 58.980 30.769 14.46 0.00 36.23 2.29
3488 7395 6.541086 TGAAAGTTAAAAACGCGTACAGAAA 58.459 32.000 14.46 0.45 36.23 2.52
3489 7396 6.035866 TCTGAAAGTTAAAAACGCGTACAGAA 59.964 34.615 14.46 1.83 36.23 3.02
3490 7397 5.519566 TCTGAAAGTTAAAAACGCGTACAGA 59.480 36.000 14.46 11.39 36.23 3.41
3491 7398 5.730269 TCTGAAAGTTAAAAACGCGTACAG 58.270 37.500 14.46 9.38 36.23 2.74
3492 7399 5.715429 TCTGAAAGTTAAAAACGCGTACA 57.285 34.783 14.46 0.00 36.23 2.90
3493 7400 6.357198 TCATCTGAAAGTTAAAAACGCGTAC 58.643 36.000 14.46 6.58 36.23 3.67
3494 7401 6.528014 TCATCTGAAAGTTAAAAACGCGTA 57.472 33.333 14.46 0.00 36.23 4.42
3495 7402 5.412526 TCATCTGAAAGTTAAAAACGCGT 57.587 34.783 5.58 5.58 36.23 6.01
3496 7403 6.911484 AATCATCTGAAAGTTAAAAACGCG 57.089 33.333 3.53 3.53 36.23 6.01
3497 7404 9.567917 GAAAAATCATCTGAAAGTTAAAAACGC 57.432 29.630 0.00 0.00 36.23 4.84
3509 7416 9.624697 CCGATAAAACAAGAAAAATCATCTGAA 57.375 29.630 0.00 0.00 0.00 3.02
3510 7417 7.754924 GCCGATAAAACAAGAAAAATCATCTGA 59.245 33.333 0.00 0.00 0.00 3.27
3511 7418 7.756722 AGCCGATAAAACAAGAAAAATCATCTG 59.243 33.333 0.00 0.00 0.00 2.90
3512 7419 7.830739 AGCCGATAAAACAAGAAAAATCATCT 58.169 30.769 0.00 0.00 0.00 2.90
3513 7420 8.466086 AAGCCGATAAAACAAGAAAAATCATC 57.534 30.769 0.00 0.00 0.00 2.92
3514 7421 8.831715 AAAGCCGATAAAACAAGAAAAATCAT 57.168 26.923 0.00 0.00 0.00 2.45
3515 7422 8.655651 AAAAGCCGATAAAACAAGAAAAATCA 57.344 26.923 0.00 0.00 0.00 2.57
3516 7423 7.944649 CGAAAAGCCGATAAAACAAGAAAAATC 59.055 33.333 0.00 0.00 0.00 2.17
3517 7424 7.568679 GCGAAAAGCCGATAAAACAAGAAAAAT 60.569 33.333 0.00 0.00 40.81 1.82
3518 7425 6.291902 GCGAAAAGCCGATAAAACAAGAAAAA 60.292 34.615 0.00 0.00 40.81 1.94
3519 7426 5.174216 GCGAAAAGCCGATAAAACAAGAAAA 59.826 36.000 0.00 0.00 40.81 2.29
3520 7427 4.677832 GCGAAAAGCCGATAAAACAAGAAA 59.322 37.500 0.00 0.00 40.81 2.52
3521 7428 4.223659 GCGAAAAGCCGATAAAACAAGAA 58.776 39.130 0.00 0.00 40.81 2.52
3522 7429 3.817238 GCGAAAAGCCGATAAAACAAGA 58.183 40.909 0.00 0.00 40.81 3.02
3545 7452 7.051000 CCAAACCTATGGAAAACAAGGAAAAA 58.949 34.615 0.00 0.00 43.54 1.94
3546 7453 6.384305 TCCAAACCTATGGAAAACAAGGAAAA 59.616 34.615 0.00 0.00 46.36 2.29
3547 7454 5.900123 TCCAAACCTATGGAAAACAAGGAAA 59.100 36.000 0.00 0.00 46.36 3.13
3548 7455 5.459505 TCCAAACCTATGGAAAACAAGGAA 58.540 37.500 0.00 0.00 46.36 3.36
3549 7456 5.068215 TCCAAACCTATGGAAAACAAGGA 57.932 39.130 0.00 0.00 46.36 3.36
3597 7504 6.721208 TCTGTGCCTCTCATAATTTCCTTTTT 59.279 34.615 0.00 0.00 0.00 1.94
3598 7505 6.248433 TCTGTGCCTCTCATAATTTCCTTTT 58.752 36.000 0.00 0.00 0.00 2.27
3599 7506 5.819991 TCTGTGCCTCTCATAATTTCCTTT 58.180 37.500 0.00 0.00 0.00 3.11
3600 7507 5.441718 TCTGTGCCTCTCATAATTTCCTT 57.558 39.130 0.00 0.00 0.00 3.36
3601 7508 5.643421 ATCTGTGCCTCTCATAATTTCCT 57.357 39.130 0.00 0.00 0.00 3.36
3602 7509 6.501781 CAAATCTGTGCCTCTCATAATTTCC 58.498 40.000 0.00 0.00 0.00 3.13
3603 7510 5.975939 GCAAATCTGTGCCTCTCATAATTTC 59.024 40.000 0.00 0.00 38.66 2.17
3604 7511 5.655532 AGCAAATCTGTGCCTCTCATAATTT 59.344 36.000 0.00 0.00 46.14 1.82
3605 7512 5.198965 AGCAAATCTGTGCCTCTCATAATT 58.801 37.500 0.00 0.00 46.14 1.40
3606 7513 4.789807 AGCAAATCTGTGCCTCTCATAAT 58.210 39.130 0.00 0.00 46.14 1.28
3607 7514 4.226427 AGCAAATCTGTGCCTCTCATAA 57.774 40.909 0.00 0.00 46.14 1.90
3608 7515 3.920231 AGCAAATCTGTGCCTCTCATA 57.080 42.857 0.00 0.00 46.14 2.15
3609 7516 2.803030 AGCAAATCTGTGCCTCTCAT 57.197 45.000 0.00 0.00 46.14 2.90
3610 7517 2.430465 GAAGCAAATCTGTGCCTCTCA 58.570 47.619 0.00 0.00 46.14 3.27
3611 7518 1.742268 GGAAGCAAATCTGTGCCTCTC 59.258 52.381 0.00 0.00 46.14 3.20
3612 7519 1.831580 GGAAGCAAATCTGTGCCTCT 58.168 50.000 0.00 0.00 46.14 3.69
3613 7520 0.449388 CGGAAGCAAATCTGTGCCTC 59.551 55.000 0.00 0.00 46.14 4.70
3614 7521 2.559785 CGGAAGCAAATCTGTGCCT 58.440 52.632 0.00 0.00 46.14 4.75
3633 7540 2.753043 GCATGACTGTGCCCCTGG 60.753 66.667 0.00 0.00 39.18 4.45
3639 7546 3.791539 CGAGAGGCATGACTGTGC 58.208 61.111 5.31 0.00 44.31 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.