Multiple sequence alignment - TraesCS3D01G133900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G133900 chr3D 100.000 2378 0 0 1 2378 93186532 93184155 0.000000e+00 4392.0
1 TraesCS3D01G133900 chr3D 92.157 408 21 8 1 407 413622966 413623363 1.230000e-157 566.0
2 TraesCS3D01G133900 chr3D 91.505 412 28 5 1 408 5018233 5018641 5.740000e-156 560.0
3 TraesCS3D01G133900 chr3B 92.220 1234 63 25 476 1680 143167325 143168554 0.000000e+00 1716.0
4 TraesCS3D01G133900 chr3B 87.445 677 70 9 1711 2378 143168545 143169215 0.000000e+00 765.0
5 TraesCS3D01G133900 chr3B 86.628 172 13 3 1522 1685 526735576 526735407 5.220000e-42 182.0
6 TraesCS3D01G133900 chr3A 91.061 895 40 21 476 1360 546698828 546699692 0.000000e+00 1173.0
7 TraesCS3D01G133900 chr3A 83.991 887 86 24 1441 2316 546699698 546700539 0.000000e+00 800.0
8 TraesCS3D01G133900 chr3A 77.060 449 60 23 1522 1953 408023229 408023651 3.980000e-53 219.0
9 TraesCS3D01G133900 chr7D 92.647 408 22 7 1 407 434163161 434162761 4.410000e-162 580.0
10 TraesCS3D01G133900 chr7D 91.687 409 22 8 1 407 1411131 1411529 7.430000e-155 556.0
11 TraesCS3D01G133900 chr7D 91.198 409 24 9 1 408 614489957 614489560 1.610000e-151 545.0
12 TraesCS3D01G133900 chr7D 81.818 154 25 3 2154 2305 202019882 202019730 2.480000e-25 126.0
13 TraesCS3D01G133900 chr7D 76.471 204 40 7 2142 2341 503088575 503088376 1.160000e-18 104.0
14 TraesCS3D01G133900 chr5D 92.308 403 25 5 6 407 498436637 498437034 3.430000e-158 568.0
15 TraesCS3D01G133900 chr5D 91.019 412 27 7 3 408 281165851 281166258 4.470000e-152 547.0
16 TraesCS3D01G133900 chr5D 75.499 351 52 19 1563 1907 437216905 437216583 8.860000e-30 141.0
17 TraesCS3D01G133900 chr5D 79.227 207 35 8 2140 2340 464994059 464994263 1.150000e-28 137.0
18 TraesCS3D01G133900 chr5D 91.525 59 3 2 2140 2196 60213217 60213159 1.960000e-11 80.5
19 TraesCS3D01G133900 chr2D 91.443 409 26 9 1 408 433715411 433715011 9.610000e-154 553.0
20 TraesCS3D01G133900 chr2D 83.673 98 13 3 2142 2237 205588079 205588175 3.260000e-14 89.8
21 TraesCS3D01G133900 chr4D 91.463 410 21 11 1 407 49799482 49799084 3.450000e-153 551.0
22 TraesCS3D01G133900 chr1D 85.030 167 15 8 1522 1684 190482796 190482636 6.800000e-36 161.0
23 TraesCS3D01G133900 chr6B 82.558 172 16 5 1522 1684 666900981 666901147 3.190000e-29 139.0
24 TraesCS3D01G133900 chr7A 75.429 350 47 17 1521 1855 19963190 19963515 1.480000e-27 134.0
25 TraesCS3D01G133900 chr5B 80.368 163 24 8 2138 2294 572347439 572347599 1.490000e-22 117.0
26 TraesCS3D01G133900 chr5B 76.355 203 37 9 1719 1916 531400503 531400307 5.410000e-17 99.0
27 TraesCS3D01G133900 chr2A 79.048 105 16 5 2142 2243 277615985 277615884 1.530000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G133900 chr3D 93184155 93186532 2377 True 4392.0 4392 100.0000 1 2378 1 chr3D.!!$R1 2377
1 TraesCS3D01G133900 chr3B 143167325 143169215 1890 False 1240.5 1716 89.8325 476 2378 2 chr3B.!!$F1 1902
2 TraesCS3D01G133900 chr3A 546698828 546700539 1711 False 986.5 1173 87.5260 476 2316 2 chr3A.!!$F2 1840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.032952 TCTCGCTAAAGCACAACCGT 59.967 50.0 2.44 0.0 42.21 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1729 0.627451 TGCAAGGCCCTCATCTCATT 59.373 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.061740 AGTAAAACCGTGACTCTCGC 57.938 50.000 0.00 0.00 0.00 5.03
29 30 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
51 52 4.975921 AAAACAGAAAACGCGTTTTTGT 57.024 31.818 40.53 36.61 42.26 2.83
52 53 4.975921 AAACAGAAAACGCGTTTTTGTT 57.024 31.818 37.43 37.43 42.26 2.83
53 54 4.975921 AACAGAAAACGCGTTTTTGTTT 57.024 31.818 37.43 30.80 42.26 2.83
54 55 6.687531 AAAAACAGAAAACGCGTTTTTGTTTT 59.312 26.923 42.81 42.81 45.93 2.43
55 56 4.693155 ACAGAAAACGCGTTTTTGTTTTG 58.307 34.783 40.53 32.10 45.47 2.44
56 57 4.209495 ACAGAAAACGCGTTTTTGTTTTGT 59.791 33.333 40.53 32.58 45.47 2.83
57 58 5.133952 CAGAAAACGCGTTTTTGTTTTGTT 58.866 33.333 40.53 22.44 45.47 2.83
58 59 5.617589 CAGAAAACGCGTTTTTGTTTTGTTT 59.382 32.000 40.53 21.76 45.47 2.83
59 60 5.841811 AGAAAACGCGTTTTTGTTTTGTTTC 59.158 32.000 40.53 27.22 45.47 2.78
60 61 3.708714 ACGCGTTTTTGTTTTGTTTCC 57.291 38.095 5.58 0.00 0.00 3.13
61 62 2.090812 ACGCGTTTTTGTTTTGTTTCCG 59.909 40.909 5.58 0.00 0.00 4.30
62 63 2.341760 CGCGTTTTTGTTTTGTTTCCGA 59.658 40.909 0.00 0.00 0.00 4.55
63 64 3.181543 CGCGTTTTTGTTTTGTTTCCGAA 60.182 39.130 0.00 0.00 0.00 4.30
64 65 4.663389 CGCGTTTTTGTTTTGTTTCCGAAA 60.663 37.500 0.00 0.00 0.00 3.46
65 66 4.779023 GCGTTTTTGTTTTGTTTCCGAAAG 59.221 37.500 0.00 0.00 0.00 2.62
86 87 3.506096 CGGCCGTGACTCTCGCTA 61.506 66.667 19.50 0.00 0.00 4.26
87 88 2.882876 GGCCGTGACTCTCGCTAA 59.117 61.111 0.00 0.00 0.00 3.09
88 89 1.214589 GGCCGTGACTCTCGCTAAA 59.785 57.895 0.00 0.00 0.00 1.85
89 90 0.802607 GGCCGTGACTCTCGCTAAAG 60.803 60.000 0.00 0.00 0.00 1.85
90 91 1.414527 GCCGTGACTCTCGCTAAAGC 61.415 60.000 0.00 0.00 37.78 3.51
91 92 0.109272 CCGTGACTCTCGCTAAAGCA 60.109 55.000 2.44 0.00 42.21 3.91
92 93 0.985549 CGTGACTCTCGCTAAAGCAC 59.014 55.000 2.44 0.00 42.21 4.40
93 94 1.666023 CGTGACTCTCGCTAAAGCACA 60.666 52.381 2.44 0.00 42.21 4.57
94 95 2.404215 GTGACTCTCGCTAAAGCACAA 58.596 47.619 2.44 0.00 42.21 3.33
95 96 2.155924 GTGACTCTCGCTAAAGCACAAC 59.844 50.000 2.44 0.00 42.21 3.32
96 97 1.727335 GACTCTCGCTAAAGCACAACC 59.273 52.381 2.44 0.00 42.21 3.77
97 98 0.716108 CTCTCGCTAAAGCACAACCG 59.284 55.000 2.44 0.00 42.21 4.44
98 99 0.032952 TCTCGCTAAAGCACAACCGT 59.967 50.000 2.44 0.00 42.21 4.83
99 100 0.163788 CTCGCTAAAGCACAACCGTG 59.836 55.000 2.44 0.00 46.56 4.94
107 108 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
178 179 8.601243 TTTTCGCGCAAAATTTTTATTTTTCA 57.399 23.077 8.75 0.00 31.96 2.69
179 180 8.601243 TTTCGCGCAAAATTTTTATTTTTCAA 57.399 23.077 8.75 0.00 31.96 2.69
180 181 8.601243 TTCGCGCAAAATTTTTATTTTTCAAA 57.399 23.077 8.75 0.00 31.96 2.69
181 182 8.601243 TCGCGCAAAATTTTTATTTTTCAAAA 57.399 23.077 8.75 0.00 31.96 2.44
182 183 9.226345 TCGCGCAAAATTTTTATTTTTCAAAAT 57.774 22.222 8.75 3.13 41.24 1.82
183 184 9.826805 CGCGCAAAATTTTTATTTTTCAAAATT 57.173 22.222 8.75 0.00 42.00 1.82
200 201 8.941127 TTCAAAATTTTCTTTTGGTTGAAACG 57.059 26.923 0.00 0.00 39.25 3.60
201 202 7.018235 TCAAAATTTTCTTTTGGTTGAAACGC 58.982 30.769 0.00 0.00 39.25 4.84
202 203 6.735678 AAATTTTCTTTTGGTTGAAACGCT 57.264 29.167 0.00 0.00 32.72 5.07
203 204 7.835634 AAATTTTCTTTTGGTTGAAACGCTA 57.164 28.000 0.00 0.00 32.72 4.26
204 205 7.835634 AATTTTCTTTTGGTTGAAACGCTAA 57.164 28.000 0.00 0.00 32.72 3.09
205 206 6.879188 TTTTCTTTTGGTTGAAACGCTAAG 57.121 33.333 0.00 0.00 32.72 2.18
206 207 4.561735 TCTTTTGGTTGAAACGCTAAGG 57.438 40.909 0.00 0.00 0.00 2.69
207 208 4.200874 TCTTTTGGTTGAAACGCTAAGGA 58.799 39.130 0.00 0.00 0.00 3.36
208 209 4.641094 TCTTTTGGTTGAAACGCTAAGGAA 59.359 37.500 0.00 0.00 0.00 3.36
209 210 4.561735 TTTGGTTGAAACGCTAAGGAAG 57.438 40.909 0.00 0.00 0.00 3.46
210 211 3.478857 TGGTTGAAACGCTAAGGAAGA 57.521 42.857 0.00 0.00 0.00 2.87
211 212 4.015872 TGGTTGAAACGCTAAGGAAGAT 57.984 40.909 0.00 0.00 0.00 2.40
212 213 4.000988 TGGTTGAAACGCTAAGGAAGATC 58.999 43.478 0.00 0.00 0.00 2.75
213 214 3.062234 GGTTGAAACGCTAAGGAAGATCG 59.938 47.826 0.00 0.00 0.00 3.69
214 215 2.888594 TGAAACGCTAAGGAAGATCGG 58.111 47.619 0.00 0.00 0.00 4.18
215 216 2.202566 GAAACGCTAAGGAAGATCGGG 58.797 52.381 0.00 0.00 0.00 5.14
216 217 0.464452 AACGCTAAGGAAGATCGGGG 59.536 55.000 0.00 0.00 0.00 5.73
217 218 0.396695 ACGCTAAGGAAGATCGGGGA 60.397 55.000 0.00 0.00 0.00 4.81
218 219 0.750850 CGCTAAGGAAGATCGGGGAA 59.249 55.000 0.00 0.00 0.00 3.97
219 220 1.138266 CGCTAAGGAAGATCGGGGAAA 59.862 52.381 0.00 0.00 0.00 3.13
220 221 2.419574 CGCTAAGGAAGATCGGGGAAAA 60.420 50.000 0.00 0.00 0.00 2.29
221 222 3.617284 GCTAAGGAAGATCGGGGAAAAA 58.383 45.455 0.00 0.00 0.00 1.94
222 223 3.377485 GCTAAGGAAGATCGGGGAAAAAC 59.623 47.826 0.00 0.00 0.00 2.43
223 224 2.509166 AGGAAGATCGGGGAAAAACC 57.491 50.000 0.00 0.00 38.08 3.27
224 225 1.708551 AGGAAGATCGGGGAAAAACCA 59.291 47.619 0.00 0.00 41.20 3.67
225 226 2.109304 AGGAAGATCGGGGAAAAACCAA 59.891 45.455 0.00 0.00 41.20 3.67
226 227 2.894765 GGAAGATCGGGGAAAAACCAAA 59.105 45.455 0.00 0.00 41.20 3.28
227 228 3.322541 GGAAGATCGGGGAAAAACCAAAA 59.677 43.478 0.00 0.00 41.20 2.44
228 229 4.304110 GAAGATCGGGGAAAAACCAAAAC 58.696 43.478 0.00 0.00 41.20 2.43
229 230 2.295070 AGATCGGGGAAAAACCAAAACG 59.705 45.455 0.00 0.00 41.20 3.60
230 231 1.472188 TCGGGGAAAAACCAAAACGT 58.528 45.000 0.00 0.00 41.20 3.99
231 232 1.404748 TCGGGGAAAAACCAAAACGTC 59.595 47.619 0.00 0.00 41.20 4.34
232 233 1.134560 CGGGGAAAAACCAAAACGTCA 59.865 47.619 0.00 0.00 41.20 4.35
233 234 2.416972 CGGGGAAAAACCAAAACGTCAA 60.417 45.455 0.00 0.00 41.20 3.18
234 235 3.597255 GGGGAAAAACCAAAACGTCAAA 58.403 40.909 0.00 0.00 41.20 2.69
235 236 4.001652 GGGGAAAAACCAAAACGTCAAAA 58.998 39.130 0.00 0.00 41.20 2.44
236 237 4.454847 GGGGAAAAACCAAAACGTCAAAAA 59.545 37.500 0.00 0.00 41.20 1.94
264 265 8.528917 ACCAGGAAAATAATCGTTTAAAAAGC 57.471 30.769 0.00 0.00 0.00 3.51
265 266 7.601130 ACCAGGAAAATAATCGTTTAAAAAGCC 59.399 33.333 0.00 0.00 0.00 4.35
266 267 7.201401 CCAGGAAAATAATCGTTTAAAAAGCCG 60.201 37.037 0.00 0.00 0.00 5.52
267 268 7.539366 CAGGAAAATAATCGTTTAAAAAGCCGA 59.461 33.333 1.72 1.72 0.00 5.54
268 269 8.083462 AGGAAAATAATCGTTTAAAAAGCCGAA 58.917 29.630 3.20 0.00 32.53 4.30
269 270 8.701540 GGAAAATAATCGTTTAAAAAGCCGAAA 58.298 29.630 3.20 0.00 32.53 3.46
271 272 9.852481 AAAATAATCGTTTAAAAAGCCGAAAAC 57.148 25.926 3.20 0.00 32.53 2.43
273 274 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
274 275 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
275 276 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
276 277 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
277 278 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
278 279 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
281 282 4.003011 CCGAAAACGCGTGCGGAA 62.003 61.111 31.93 0.00 46.29 4.30
282 283 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
283 284 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
284 285 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
285 286 1.125270 GAAAACGCGTGCGGAAAAAT 58.875 45.000 14.98 0.00 44.69 1.82
286 287 2.308811 GAAAACGCGTGCGGAAAAATA 58.691 42.857 14.98 0.00 44.69 1.40
287 288 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
288 289 2.402640 AACGCGTGCGGAAAAATAAA 57.597 40.000 14.98 0.00 44.69 1.40
289 290 2.402640 ACGCGTGCGGAAAAATAAAA 57.597 40.000 12.93 0.00 44.69 1.52
290 291 2.728922 ACGCGTGCGGAAAAATAAAAA 58.271 38.095 12.93 0.00 44.69 1.94
311 312 6.544928 AAAAACAAAATCTGAAGGGAGTGT 57.455 33.333 0.00 0.00 0.00 3.55
312 313 5.774498 AAACAAAATCTGAAGGGAGTGTC 57.226 39.130 0.00 0.00 0.00 3.67
313 314 3.756117 ACAAAATCTGAAGGGAGTGTCC 58.244 45.455 0.00 0.00 35.23 4.02
314 315 3.138283 ACAAAATCTGAAGGGAGTGTCCA 59.862 43.478 0.00 0.00 38.64 4.02
315 316 3.710209 AAATCTGAAGGGAGTGTCCAG 57.290 47.619 0.00 0.00 38.64 3.86
316 317 2.630889 ATCTGAAGGGAGTGTCCAGA 57.369 50.000 0.00 0.00 38.64 3.86
317 318 1.930251 TCTGAAGGGAGTGTCCAGAG 58.070 55.000 0.00 0.00 38.64 3.35
318 319 0.248843 CTGAAGGGAGTGTCCAGAGC 59.751 60.000 0.00 0.00 38.64 4.09
319 320 1.216710 GAAGGGAGTGTCCAGAGCG 59.783 63.158 0.00 0.00 38.64 5.03
320 321 2.844072 GAAGGGAGTGTCCAGAGCGC 62.844 65.000 0.00 0.00 38.64 5.92
321 322 4.803426 GGGAGTGTCCAGAGCGCG 62.803 72.222 0.00 0.00 38.64 6.86
322 323 3.749064 GGAGTGTCCAGAGCGCGA 61.749 66.667 12.10 0.00 36.28 5.87
323 324 2.505118 GAGTGTCCAGAGCGCGAC 60.505 66.667 12.10 3.67 0.00 5.19
324 325 3.268965 GAGTGTCCAGAGCGCGACA 62.269 63.158 12.10 11.17 36.67 4.35
327 328 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
328 329 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
338 339 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
339 340 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
340 341 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
341 342 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
342 343 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
343 344 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
344 345 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
345 346 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
346 347 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
347 348 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
348 349 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
349 350 4.463879 AATGGCTGAGAGCGCGCT 62.464 61.111 37.28 37.28 43.62 5.92
350 351 2.960957 GAATGGCTGAGAGCGCGCTA 62.961 60.000 36.69 18.72 43.62 4.26
351 352 2.578163 AATGGCTGAGAGCGCGCTAA 62.578 55.000 36.69 21.47 43.62 3.09
352 353 2.279784 GGCTGAGAGCGCGCTAAT 60.280 61.111 36.69 26.20 43.62 1.73
353 354 1.884926 GGCTGAGAGCGCGCTAATT 60.885 57.895 36.69 22.76 43.62 1.40
354 355 1.275066 GCTGAGAGCGCGCTAATTG 59.725 57.895 36.69 24.23 0.00 2.32
355 356 1.930100 CTGAGAGCGCGCTAATTGG 59.070 57.895 36.69 18.91 0.00 3.16
356 357 2.098842 CTGAGAGCGCGCTAATTGGC 62.099 60.000 36.69 20.78 0.00 4.52
366 367 2.566952 GCTAATTGGCGCTGATTGTT 57.433 45.000 7.64 0.00 0.00 2.83
367 368 2.187707 GCTAATTGGCGCTGATTGTTG 58.812 47.619 7.64 4.77 0.00 3.33
368 369 2.187707 CTAATTGGCGCTGATTGTTGC 58.812 47.619 7.64 0.00 0.00 4.17
374 375 3.583383 GCTGATTGTTGCGAGGCT 58.417 55.556 0.00 0.00 0.00 4.58
375 376 1.427020 GCTGATTGTTGCGAGGCTC 59.573 57.895 3.87 3.87 0.00 4.70
376 377 1.986575 GCTGATTGTTGCGAGGCTCC 61.987 60.000 9.32 2.37 0.00 4.70
377 378 1.372087 CTGATTGTTGCGAGGCTCCC 61.372 60.000 9.32 0.00 0.00 4.30
378 379 1.078143 GATTGTTGCGAGGCTCCCT 60.078 57.895 9.32 0.00 36.03 4.20
379 380 0.178068 GATTGTTGCGAGGCTCCCTA 59.822 55.000 9.32 0.00 31.76 3.53
380 381 0.618458 ATTGTTGCGAGGCTCCCTAA 59.382 50.000 9.32 0.00 31.76 2.69
381 382 0.036388 TTGTTGCGAGGCTCCCTAAG 60.036 55.000 9.32 0.00 31.76 2.18
382 383 1.153349 GTTGCGAGGCTCCCTAAGG 60.153 63.158 9.32 0.00 31.76 2.69
383 384 1.305802 TTGCGAGGCTCCCTAAGGA 60.306 57.895 9.32 0.00 41.08 3.36
391 392 2.044252 TCCCTAAGGAGCGCTCGT 60.044 61.111 29.81 27.91 37.19 4.18
392 393 1.681327 TCCCTAAGGAGCGCTCGTT 60.681 57.895 37.90 37.90 37.19 3.85
393 394 0.394762 TCCCTAAGGAGCGCTCGTTA 60.395 55.000 36.49 36.49 37.19 3.18
394 395 0.458669 CCCTAAGGAGCGCTCGTTAA 59.541 55.000 37.36 26.29 38.81 2.01
395 396 1.557651 CCTAAGGAGCGCTCGTTAAC 58.442 55.000 37.36 23.22 38.81 2.01
396 397 1.134560 CCTAAGGAGCGCTCGTTAACT 59.865 52.381 37.36 24.78 38.81 2.24
397 398 2.357009 CCTAAGGAGCGCTCGTTAACTA 59.643 50.000 37.36 25.35 38.81 2.24
398 399 2.563471 AAGGAGCGCTCGTTAACTAG 57.437 50.000 36.34 3.24 36.12 2.57
399 400 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
400 401 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
401 402 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
402 403 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
403 404 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
404 405 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
405 406 1.918609 CGCTCGTTAACTAGTTGCTCC 59.081 52.381 18.56 2.45 0.00 4.70
406 407 2.269172 GCTCGTTAACTAGTTGCTCCC 58.731 52.381 18.56 0.76 0.00 4.30
407 408 2.889852 CTCGTTAACTAGTTGCTCCCC 58.110 52.381 18.56 0.00 0.00 4.81
408 409 1.203052 TCGTTAACTAGTTGCTCCCCG 59.797 52.381 18.56 10.33 0.00 5.73
409 410 1.067354 CGTTAACTAGTTGCTCCCCGT 60.067 52.381 18.56 0.00 0.00 5.28
410 411 2.614779 GTTAACTAGTTGCTCCCCGTC 58.385 52.381 18.56 0.00 0.00 4.79
411 412 2.226962 TAACTAGTTGCTCCCCGTCT 57.773 50.000 18.56 0.00 0.00 4.18
412 413 2.226962 AACTAGTTGCTCCCCGTCTA 57.773 50.000 7.48 0.00 0.00 2.59
413 414 2.226962 ACTAGTTGCTCCCCGTCTAA 57.773 50.000 0.00 0.00 0.00 2.10
414 415 2.532843 ACTAGTTGCTCCCCGTCTAAA 58.467 47.619 0.00 0.00 0.00 1.85
415 416 2.233186 ACTAGTTGCTCCCCGTCTAAAC 59.767 50.000 0.00 0.00 0.00 2.01
416 417 1.053424 AGTTGCTCCCCGTCTAAACA 58.947 50.000 0.00 0.00 0.00 2.83
417 418 1.002087 AGTTGCTCCCCGTCTAAACAG 59.998 52.381 0.00 0.00 0.00 3.16
418 419 0.321298 TTGCTCCCCGTCTAAACAGC 60.321 55.000 0.00 0.00 0.00 4.40
419 420 1.449778 GCTCCCCGTCTAAACAGCC 60.450 63.158 0.00 0.00 0.00 4.85
420 421 1.221021 CTCCCCGTCTAAACAGCCC 59.779 63.158 0.00 0.00 0.00 5.19
421 422 2.125269 CCCCGTCTAAACAGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
422 423 2.660802 CCCGTCTAAACAGCCCGT 59.339 61.111 0.00 0.00 0.00 5.28
423 424 1.004200 CCCGTCTAAACAGCCCGTT 60.004 57.895 0.00 0.00 40.50 4.44
424 425 1.017701 CCCGTCTAAACAGCCCGTTC 61.018 60.000 0.00 0.00 36.59 3.95
425 426 1.017701 CCGTCTAAACAGCCCGTTCC 61.018 60.000 0.00 0.00 36.59 3.62
426 427 1.017701 CGTCTAAACAGCCCGTTCCC 61.018 60.000 0.00 0.00 36.59 3.97
427 428 0.323957 GTCTAAACAGCCCGTTCCCT 59.676 55.000 0.00 0.00 36.59 4.20
428 429 1.061546 TCTAAACAGCCCGTTCCCTT 58.938 50.000 0.00 0.00 36.59 3.95
429 430 1.002773 TCTAAACAGCCCGTTCCCTTC 59.997 52.381 0.00 0.00 36.59 3.46
430 431 0.037160 TAAACAGCCCGTTCCCTTCC 59.963 55.000 0.00 0.00 36.59 3.46
431 432 2.708593 AAACAGCCCGTTCCCTTCCC 62.709 60.000 0.00 0.00 36.59 3.97
432 433 3.646715 CAGCCCGTTCCCTTCCCA 61.647 66.667 0.00 0.00 0.00 4.37
433 434 3.647771 AGCCCGTTCCCTTCCCAC 61.648 66.667 0.00 0.00 0.00 4.61
434 435 3.961414 GCCCGTTCCCTTCCCACA 61.961 66.667 0.00 0.00 0.00 4.17
435 436 2.033602 CCCGTTCCCTTCCCACAC 59.966 66.667 0.00 0.00 0.00 3.82
436 437 2.358247 CCGTTCCCTTCCCACACG 60.358 66.667 0.00 0.00 0.00 4.49
437 438 2.358247 CGTTCCCTTCCCACACGG 60.358 66.667 0.00 0.00 0.00 4.94
447 448 2.281484 CCACACGGGTCTGGTTGG 60.281 66.667 0.00 0.00 0.00 3.77
448 449 2.281484 CACACGGGTCTGGTTGGG 60.281 66.667 0.00 0.00 0.00 4.12
449 450 4.265056 ACACGGGTCTGGTTGGGC 62.265 66.667 0.00 0.00 0.00 5.36
452 453 3.006728 CGGGTCTGGTTGGGCCTA 61.007 66.667 4.53 0.00 38.35 3.93
453 454 2.598787 CGGGTCTGGTTGGGCCTAA 61.599 63.158 4.53 0.00 38.35 2.69
454 455 1.921869 CGGGTCTGGTTGGGCCTAAT 61.922 60.000 4.25 0.00 38.35 1.73
455 456 0.395724 GGGTCTGGTTGGGCCTAATG 60.396 60.000 4.25 0.00 38.35 1.90
456 457 0.395724 GGTCTGGTTGGGCCTAATGG 60.396 60.000 4.25 0.00 38.35 3.16
457 458 0.623723 GTCTGGTTGGGCCTAATGGA 59.376 55.000 4.25 1.03 38.35 3.41
458 459 0.918983 TCTGGTTGGGCCTAATGGAG 59.081 55.000 4.25 1.61 38.35 3.86
469 470 2.524306 CCTAATGGAGGCAACCAAACA 58.476 47.619 7.45 0.00 43.47 2.83
470 471 2.231235 CCTAATGGAGGCAACCAAACAC 59.769 50.000 7.45 0.00 43.47 3.32
471 472 1.786937 AATGGAGGCAACCAAACACA 58.213 45.000 7.45 0.00 43.47 3.72
472 473 1.039856 ATGGAGGCAACCAAACACAC 58.960 50.000 7.45 0.00 43.47 3.82
473 474 1.040339 TGGAGGCAACCAAACACACC 61.040 55.000 1.08 0.00 36.96 4.16
474 475 1.739667 GAGGCAACCAAACACACCC 59.260 57.895 0.00 0.00 37.17 4.61
480 481 3.215975 GCAACCAAACACACCCTTAGTA 58.784 45.455 0.00 0.00 0.00 1.82
508 509 0.471591 TTGGGCCTTTTGTGATGCCT 60.472 50.000 4.53 0.00 43.50 4.75
561 562 5.332707 GGCACGATATTTTCCTTCTCAAAC 58.667 41.667 0.00 0.00 0.00 2.93
595 596 4.396166 CGGCACAATATTTCAGGTTCTCTT 59.604 41.667 0.00 0.00 0.00 2.85
596 597 5.447818 CGGCACAATATTTCAGGTTCTCTTC 60.448 44.000 0.00 0.00 0.00 2.87
598 599 5.649831 GCACAATATTTCAGGTTCTCTTCCT 59.350 40.000 0.00 0.00 35.45 3.36
602 603 8.579863 ACAATATTTCAGGTTCTCTTCCTTTTG 58.420 33.333 0.00 0.00 32.37 2.44
603 604 4.918810 TTTCAGGTTCTCTTCCTTTTGC 57.081 40.909 0.00 0.00 32.37 3.68
606 607 3.136443 TCAGGTTCTCTTCCTTTTGCTCA 59.864 43.478 0.00 0.00 32.37 4.26
607 608 3.885297 CAGGTTCTCTTCCTTTTGCTCAA 59.115 43.478 0.00 0.00 32.37 3.02
608 609 4.339247 CAGGTTCTCTTCCTTTTGCTCAAA 59.661 41.667 0.00 0.00 32.37 2.69
610 611 6.207417 CAGGTTCTCTTCCTTTTGCTCAAATA 59.793 38.462 0.00 0.00 32.37 1.40
611 612 6.777580 AGGTTCTCTTCCTTTTGCTCAAATAA 59.222 34.615 0.00 0.00 30.18 1.40
810 817 2.187239 TCTCTTCCAGAGGCATCCAT 57.813 50.000 0.00 0.00 42.54 3.41
826 833 1.556911 TCCATCAGCTTTCCACTCCTC 59.443 52.381 0.00 0.00 0.00 3.71
827 834 1.280133 CCATCAGCTTTCCACTCCTCA 59.720 52.381 0.00 0.00 0.00 3.86
828 835 2.092538 CCATCAGCTTTCCACTCCTCAT 60.093 50.000 0.00 0.00 0.00 2.90
880 887 4.500116 GCACGTCTCTCCTCCGGC 62.500 72.222 0.00 0.00 0.00 6.13
952 978 0.108186 CCACACGCATAGCTGAGGAA 60.108 55.000 0.00 0.00 0.00 3.36
953 979 1.284657 CACACGCATAGCTGAGGAAG 58.715 55.000 0.00 0.00 0.00 3.46
962 988 2.435586 CTGAGGAAGCCAGGCACG 60.436 66.667 15.80 0.00 0.00 5.34
963 989 3.241530 TGAGGAAGCCAGGCACGT 61.242 61.111 15.80 8.90 0.00 4.49
964 990 1.888436 CTGAGGAAGCCAGGCACGTA 61.888 60.000 15.80 0.00 0.00 3.57
965 991 1.153549 GAGGAAGCCAGGCACGTAG 60.154 63.158 15.80 0.00 0.00 3.51
967 993 0.613853 AGGAAGCCAGGCACGTAGTA 60.614 55.000 15.80 0.00 41.61 1.82
968 994 0.179108 GGAAGCCAGGCACGTAGTAG 60.179 60.000 15.80 0.00 41.61 2.57
969 995 0.815734 GAAGCCAGGCACGTAGTAGA 59.184 55.000 15.80 0.00 41.61 2.59
979 1005 1.602851 CACGTAGTAGATCCCAGACCG 59.397 57.143 0.00 0.00 41.61 4.79
980 1006 1.211457 ACGTAGTAGATCCCAGACCGT 59.789 52.381 0.00 0.00 41.94 4.83
999 1026 2.606272 CGTACGTCCAAATTAAGCTCCC 59.394 50.000 7.22 0.00 0.00 4.30
1014 1044 2.196997 CTCCCATGGACGAGGGCAAA 62.197 60.000 15.22 0.00 45.07 3.68
1167 1197 0.323178 CAGGCTTCTGGGTGCTCATT 60.323 55.000 0.00 0.00 34.96 2.57
1380 1410 1.227556 CCCGGGGTTTAGATGAGCG 60.228 63.158 14.71 0.00 0.00 5.03
1420 1456 4.711846 AGCTATGTATCCCGATGCAGATAA 59.288 41.667 0.00 0.00 36.88 1.75
1431 1467 8.712228 TCCCGATGCAGATAACTATGATATAT 57.288 34.615 0.00 0.00 0.00 0.86
1468 1512 4.307443 AGTAGAAGGTGTTTTTGCAAGC 57.693 40.909 0.00 0.00 0.00 4.01
1523 1567 0.043637 AATTACTCCCTCGGTCCCCA 59.956 55.000 0.00 0.00 0.00 4.96
1668 1719 5.924475 AGTGTGTAAATTTTCAGGACGAG 57.076 39.130 0.00 0.00 0.00 4.18
1671 1722 7.383687 AGTGTGTAAATTTTCAGGACGAGATA 58.616 34.615 0.00 0.00 0.00 1.98
1692 1743 1.672881 CGTTGAAATGAGATGAGGGCC 59.327 52.381 0.00 0.00 0.00 5.80
1698 1749 0.627451 ATGAGATGAGGGCCTTGCAA 59.373 50.000 7.89 0.00 0.00 4.08
1699 1750 0.405198 TGAGATGAGGGCCTTGCAAA 59.595 50.000 7.89 0.00 0.00 3.68
1700 1751 1.203038 TGAGATGAGGGCCTTGCAAAA 60.203 47.619 7.89 0.00 0.00 2.44
1701 1752 1.895131 GAGATGAGGGCCTTGCAAAAA 59.105 47.619 7.89 0.00 0.00 1.94
1702 1753 1.897802 AGATGAGGGCCTTGCAAAAAG 59.102 47.619 7.89 0.00 0.00 2.27
1703 1754 1.895131 GATGAGGGCCTTGCAAAAAGA 59.105 47.619 7.89 0.00 0.00 2.52
1704 1755 1.039856 TGAGGGCCTTGCAAAAAGAC 58.960 50.000 7.89 0.00 0.00 3.01
1705 1756 1.039856 GAGGGCCTTGCAAAAAGACA 58.960 50.000 7.89 0.00 0.00 3.41
1706 1757 1.412343 GAGGGCCTTGCAAAAAGACAA 59.588 47.619 7.89 0.00 0.00 3.18
1707 1758 1.836802 AGGGCCTTGCAAAAAGACAAA 59.163 42.857 0.00 0.00 0.00 2.83
1708 1759 2.158914 AGGGCCTTGCAAAAAGACAAAG 60.159 45.455 0.00 0.00 0.00 2.77
1709 1760 2.212652 GGCCTTGCAAAAAGACAAAGG 58.787 47.619 0.00 0.00 0.00 3.11
1710 1761 2.212652 GCCTTGCAAAAAGACAAAGGG 58.787 47.619 0.00 0.00 0.00 3.95
1711 1762 2.212652 CCTTGCAAAAAGACAAAGGGC 58.787 47.619 0.00 0.00 0.00 5.19
1712 1763 2.212652 CTTGCAAAAAGACAAAGGGCC 58.787 47.619 0.00 0.00 0.00 5.80
1713 1764 1.494960 TGCAAAAAGACAAAGGGCCT 58.505 45.000 0.00 0.00 0.00 5.19
1714 1765 1.836802 TGCAAAAAGACAAAGGGCCTT 59.163 42.857 14.48 14.48 0.00 4.35
1715 1766 2.212652 GCAAAAAGACAAAGGGCCTTG 58.787 47.619 21.72 16.04 0.00 3.61
1716 1767 2.212652 CAAAAAGACAAAGGGCCTTGC 58.787 47.619 21.72 12.54 0.00 4.01
1733 1784 4.810491 GCCTTGCAAAAAGACAAATCTGAA 59.190 37.500 0.00 0.00 34.48 3.02
1840 1892 4.846779 AAATTTTACACACACGCCTCAT 57.153 36.364 0.00 0.00 0.00 2.90
1847 1899 2.205074 CACACACGCCTCATATCCTTC 58.795 52.381 0.00 0.00 0.00 3.46
1860 1912 8.560374 GCCTCATATCCTTCTTTATTTGTACAC 58.440 37.037 0.00 0.00 0.00 2.90
1861 1913 9.838339 CCTCATATCCTTCTTTATTTGTACACT 57.162 33.333 0.00 0.00 0.00 3.55
1930 1984 1.260544 AAGTTGGCCTCCATGAAAGC 58.739 50.000 3.32 0.00 31.53 3.51
1965 2020 3.906218 TGTCATTCTCCTCCATCCCATAG 59.094 47.826 0.00 0.00 0.00 2.23
2065 2124 7.515998 CGTTGTGTCCAATGGAAAAATGTTTAC 60.516 37.037 2.31 0.00 34.54 2.01
2096 2155 2.134789 AAGCGAAGGATGAGCCAAAT 57.865 45.000 0.00 0.00 40.02 2.32
2097 2156 3.281727 AAGCGAAGGATGAGCCAAATA 57.718 42.857 0.00 0.00 40.02 1.40
2116 2175 6.765989 CCAAATAAGACGAGACAATTCCCATA 59.234 38.462 0.00 0.00 0.00 2.74
2181 2240 1.153289 CATCGGCTGGAGGGACAAG 60.153 63.158 0.00 0.00 0.00 3.16
2196 2255 3.429410 GGGACAAGTATTTGGCTTGATGC 60.429 47.826 11.37 2.56 44.29 3.91
2220 2280 6.481134 CCGGATGCAAATCTTCATATATTCG 58.519 40.000 0.00 0.00 0.00 3.34
2221 2281 5.961843 CGGATGCAAATCTTCATATATTCGC 59.038 40.000 0.00 0.00 0.00 4.70
2222 2282 6.261118 GGATGCAAATCTTCATATATTCGCC 58.739 40.000 0.00 0.00 0.00 5.54
2239 2299 0.529773 GCCGTGCGGTGATCAAGATA 60.530 55.000 12.46 0.00 37.65 1.98
2245 2305 2.760650 TGCGGTGATCAAGATAGAGTGT 59.239 45.455 0.00 0.00 0.00 3.55
2254 2314 4.256110 TCAAGATAGAGTGTTGTGCCATG 58.744 43.478 0.00 0.00 33.11 3.66
2255 2315 2.636830 AGATAGAGTGTTGTGCCATGC 58.363 47.619 0.00 0.00 0.00 4.06
2271 2331 3.197265 CCATGCACAGTATTGACGATGA 58.803 45.455 0.00 0.00 0.00 2.92
2303 2363 1.375098 GCAAGGTGCAGCAGGATCTC 61.375 60.000 19.63 0.00 44.26 2.75
2336 2396 4.695993 TCAATGGGCGCGTGCAGA 62.696 61.111 24.18 8.56 45.35 4.26
2357 2417 2.806434 AGGCATGTTCTGTTTGGCATA 58.194 42.857 0.00 0.00 38.31 3.14
2359 2419 2.493278 GGCATGTTCTGTTTGGCATAGT 59.507 45.455 0.00 0.00 36.09 2.12
2361 2421 3.191162 GCATGTTCTGTTTGGCATAGTGA 59.809 43.478 0.00 0.00 0.00 3.41
2362 2422 4.726416 CATGTTCTGTTTGGCATAGTGAC 58.274 43.478 0.00 0.00 0.00 3.67
2366 2426 1.295357 TGTTTGGCATAGTGACGGCG 61.295 55.000 4.80 4.80 0.00 6.46
2373 2433 0.455464 CATAGTGACGGCGTCAACGA 60.455 55.000 40.38 28.65 44.49 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.665161 CGCGAGAGTCACGGTTTTACT 60.665 52.381 11.95 0.00 0.00 2.24
1 2 0.706729 CGCGAGAGTCACGGTTTTAC 59.293 55.000 11.95 0.00 0.00 2.01
2 3 0.592637 TCGCGAGAGTCACGGTTTTA 59.407 50.000 3.71 0.00 34.84 1.52
3 4 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
4 5 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
5 6 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
6 7 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
7 8 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
8 9 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
9 10 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
30 31 4.975921 ACAAAAACGCGTTTTCTGTTTT 57.024 31.818 40.39 25.84 45.00 2.43
31 32 4.975921 AACAAAAACGCGTTTTCTGTTT 57.024 31.818 37.43 29.66 41.45 2.83
32 33 4.975921 AAACAAAAACGCGTTTTCTGTT 57.024 31.818 37.43 37.43 41.45 3.16
33 34 4.209495 ACAAAACAAAAACGCGTTTTCTGT 59.791 33.333 40.39 36.52 42.00 3.41
34 35 4.693155 ACAAAACAAAAACGCGTTTTCTG 58.307 34.783 40.39 36.03 42.00 3.02
35 36 4.975921 ACAAAACAAAAACGCGTTTTCT 57.024 31.818 40.39 28.99 42.00 2.52
36 37 5.057046 GGAAACAAAACAAAAACGCGTTTTC 59.943 36.000 40.39 26.81 42.00 2.29
37 38 4.904724 GGAAACAAAACAAAAACGCGTTTT 59.095 33.333 36.93 36.93 44.08 2.43
38 39 4.456019 GGAAACAAAACAAAAACGCGTTT 58.544 34.783 30.36 30.36 36.92 3.60
39 40 3.421955 CGGAAACAAAACAAAAACGCGTT 60.422 39.130 20.79 20.79 0.00 4.84
40 41 2.090812 CGGAAACAAAACAAAAACGCGT 59.909 40.909 5.58 5.58 0.00 6.01
41 42 2.341760 TCGGAAACAAAACAAAAACGCG 59.658 40.909 3.53 3.53 0.00 6.01
42 43 3.974585 TCGGAAACAAAACAAAAACGC 57.025 38.095 0.00 0.00 0.00 4.84
43 44 5.309707 CCTTTCGGAAACAAAACAAAAACG 58.690 37.500 0.00 0.00 0.00 3.60
44 45 5.083389 GCCTTTCGGAAACAAAACAAAAAC 58.917 37.500 0.00 0.00 0.00 2.43
45 46 4.755123 TGCCTTTCGGAAACAAAACAAAAA 59.245 33.333 0.00 0.00 0.00 1.94
46 47 4.152580 GTGCCTTTCGGAAACAAAACAAAA 59.847 37.500 0.00 0.00 0.00 2.44
47 48 3.680458 GTGCCTTTCGGAAACAAAACAAA 59.320 39.130 0.00 0.00 0.00 2.83
48 49 3.254892 GTGCCTTTCGGAAACAAAACAA 58.745 40.909 0.00 0.00 0.00 2.83
49 50 2.732597 CGTGCCTTTCGGAAACAAAACA 60.733 45.455 0.00 0.00 0.00 2.83
50 51 1.849829 CGTGCCTTTCGGAAACAAAAC 59.150 47.619 0.00 0.00 0.00 2.43
51 52 2.196295 CGTGCCTTTCGGAAACAAAA 57.804 45.000 0.00 0.00 0.00 2.44
52 53 3.928343 CGTGCCTTTCGGAAACAAA 57.072 47.368 0.00 0.00 0.00 2.83
69 70 2.537792 TTTAGCGAGAGTCACGGCCG 62.538 60.000 26.86 26.86 0.00 6.13
70 71 0.802607 CTTTAGCGAGAGTCACGGCC 60.803 60.000 11.95 0.00 0.00 6.13
71 72 1.414527 GCTTTAGCGAGAGTCACGGC 61.415 60.000 11.95 2.56 0.00 5.68
72 73 0.109272 TGCTTTAGCGAGAGTCACGG 60.109 55.000 11.95 0.00 45.83 4.94
73 74 0.985549 GTGCTTTAGCGAGAGTCACG 59.014 55.000 5.53 5.53 45.83 4.35
74 75 2.065993 TGTGCTTTAGCGAGAGTCAC 57.934 50.000 0.00 5.49 45.83 3.67
75 76 2.404215 GTTGTGCTTTAGCGAGAGTCA 58.596 47.619 0.00 0.00 45.83 3.41
76 77 1.727335 GGTTGTGCTTTAGCGAGAGTC 59.273 52.381 0.00 0.00 45.83 3.36
77 78 1.797025 GGTTGTGCTTTAGCGAGAGT 58.203 50.000 0.00 0.00 45.83 3.24
78 79 0.716108 CGGTTGTGCTTTAGCGAGAG 59.284 55.000 0.00 0.00 45.83 3.20
79 80 0.032952 ACGGTTGTGCTTTAGCGAGA 59.967 50.000 10.18 0.00 45.83 4.04
80 81 0.163788 CACGGTTGTGCTTTAGCGAG 59.836 55.000 10.18 0.56 45.83 5.03
81 82 2.230892 CACGGTTGTGCTTTAGCGA 58.769 52.632 10.18 0.00 45.83 4.93
82 83 4.818417 CACGGTTGTGCTTTAGCG 57.182 55.556 0.00 0.00 45.83 4.26
92 93 4.717629 TCGCGAGAGGCACGGTTG 62.718 66.667 3.71 0.00 43.84 3.77
93 94 2.981977 TTTTCGCGAGAGGCACGGTT 62.982 55.000 9.59 0.00 43.84 4.44
94 95 2.981977 TTTTTCGCGAGAGGCACGGT 62.982 55.000 9.59 0.00 43.84 4.83
95 96 2.314647 TTTTTCGCGAGAGGCACGG 61.315 57.895 9.59 0.00 43.84 4.94
96 97 3.240203 TTTTTCGCGAGAGGCACG 58.760 55.556 9.59 0.00 43.84 5.34
152 153 9.061610 TGAAAAATAAAAATTTTGCGCGAAAAA 57.938 22.222 26.31 26.31 37.10 1.94
153 154 8.601243 TGAAAAATAAAAATTTTGCGCGAAAA 57.399 23.077 25.75 20.37 37.93 2.29
154 155 8.601243 TTGAAAAATAAAAATTTTGCGCGAAA 57.399 23.077 24.37 24.37 32.89 3.46
155 156 8.601243 TTTGAAAAATAAAAATTTTGCGCGAA 57.399 23.077 12.10 5.81 32.89 4.70
156 157 8.601243 TTTTGAAAAATAAAAATTTTGCGCGA 57.399 23.077 12.10 0.00 32.89 5.87
157 158 9.826805 AATTTTGAAAAATAAAAATTTTGCGCG 57.173 22.222 0.00 0.00 41.07 6.86
174 175 9.387123 CGTTTCAACCAAAAGAAAATTTTGAAA 57.613 25.926 8.47 6.49 40.73 2.69
175 176 7.535599 GCGTTTCAACCAAAAGAAAATTTTGAA 59.464 29.630 8.47 0.16 40.73 2.69
176 177 7.018235 GCGTTTCAACCAAAAGAAAATTTTGA 58.982 30.769 8.47 0.00 40.73 2.69
177 178 7.020602 AGCGTTTCAACCAAAAGAAAATTTTG 58.979 30.769 8.47 6.18 35.71 2.44
178 179 7.139896 AGCGTTTCAACCAAAAGAAAATTTT 57.860 28.000 2.28 2.28 35.71 1.82
179 180 6.735678 AGCGTTTCAACCAAAAGAAAATTT 57.264 29.167 0.00 0.00 35.71 1.82
180 181 7.011016 CCTTAGCGTTTCAACCAAAAGAAAATT 59.989 33.333 0.00 0.00 35.71 1.82
181 182 6.478673 CCTTAGCGTTTCAACCAAAAGAAAAT 59.521 34.615 0.00 0.00 35.71 1.82
182 183 5.808030 CCTTAGCGTTTCAACCAAAAGAAAA 59.192 36.000 0.00 0.00 35.71 2.29
183 184 5.125739 TCCTTAGCGTTTCAACCAAAAGAAA 59.874 36.000 0.00 0.00 0.00 2.52
184 185 4.641094 TCCTTAGCGTTTCAACCAAAAGAA 59.359 37.500 0.00 0.00 0.00 2.52
185 186 4.200874 TCCTTAGCGTTTCAACCAAAAGA 58.799 39.130 0.00 0.00 0.00 2.52
186 187 4.561735 TCCTTAGCGTTTCAACCAAAAG 57.438 40.909 0.00 0.00 0.00 2.27
187 188 4.641094 TCTTCCTTAGCGTTTCAACCAAAA 59.359 37.500 0.00 0.00 0.00 2.44
188 189 4.200874 TCTTCCTTAGCGTTTCAACCAAA 58.799 39.130 0.00 0.00 0.00 3.28
189 190 3.811083 TCTTCCTTAGCGTTTCAACCAA 58.189 40.909 0.00 0.00 0.00 3.67
190 191 3.478857 TCTTCCTTAGCGTTTCAACCA 57.521 42.857 0.00 0.00 0.00 3.67
191 192 3.062234 CGATCTTCCTTAGCGTTTCAACC 59.938 47.826 0.00 0.00 0.00 3.77
192 193 3.062234 CCGATCTTCCTTAGCGTTTCAAC 59.938 47.826 0.00 0.00 0.00 3.18
193 194 3.259064 CCGATCTTCCTTAGCGTTTCAA 58.741 45.455 0.00 0.00 0.00 2.69
194 195 2.418197 CCCGATCTTCCTTAGCGTTTCA 60.418 50.000 0.00 0.00 0.00 2.69
195 196 2.202566 CCCGATCTTCCTTAGCGTTTC 58.797 52.381 0.00 0.00 0.00 2.78
196 197 1.134491 CCCCGATCTTCCTTAGCGTTT 60.134 52.381 0.00 0.00 0.00 3.60
197 198 0.464452 CCCCGATCTTCCTTAGCGTT 59.536 55.000 0.00 0.00 0.00 4.84
198 199 0.396695 TCCCCGATCTTCCTTAGCGT 60.397 55.000 0.00 0.00 0.00 5.07
199 200 0.750850 TTCCCCGATCTTCCTTAGCG 59.249 55.000 0.00 0.00 0.00 4.26
200 201 3.277142 TTTTCCCCGATCTTCCTTAGC 57.723 47.619 0.00 0.00 0.00 3.09
201 202 3.945921 GGTTTTTCCCCGATCTTCCTTAG 59.054 47.826 0.00 0.00 0.00 2.18
202 203 3.331294 TGGTTTTTCCCCGATCTTCCTTA 59.669 43.478 0.00 0.00 34.77 2.69
203 204 2.109304 TGGTTTTTCCCCGATCTTCCTT 59.891 45.455 0.00 0.00 34.77 3.36
204 205 1.708551 TGGTTTTTCCCCGATCTTCCT 59.291 47.619 0.00 0.00 34.77 3.36
205 206 2.209690 TGGTTTTTCCCCGATCTTCC 57.790 50.000 0.00 0.00 34.77 3.46
206 207 4.304110 GTTTTGGTTTTTCCCCGATCTTC 58.696 43.478 0.00 0.00 34.77 2.87
207 208 3.243602 CGTTTTGGTTTTTCCCCGATCTT 60.244 43.478 0.00 0.00 34.77 2.40
208 209 2.295070 CGTTTTGGTTTTTCCCCGATCT 59.705 45.455 0.00 0.00 34.77 2.75
209 210 2.034939 ACGTTTTGGTTTTTCCCCGATC 59.965 45.455 0.00 0.00 34.77 3.69
210 211 2.033372 ACGTTTTGGTTTTTCCCCGAT 58.967 42.857 0.00 0.00 34.77 4.18
211 212 1.404748 GACGTTTTGGTTTTTCCCCGA 59.595 47.619 0.00 0.00 34.77 5.14
212 213 1.134560 TGACGTTTTGGTTTTTCCCCG 59.865 47.619 0.00 0.00 34.77 5.73
213 214 2.963548 TGACGTTTTGGTTTTTCCCC 57.036 45.000 0.00 0.00 34.77 4.81
214 215 5.608676 TTTTTGACGTTTTGGTTTTTCCC 57.391 34.783 0.00 0.00 34.77 3.97
238 239 8.984764 GCTTTTTAAACGATTATTTTCCTGGTT 58.015 29.630 0.00 0.00 0.00 3.67
239 240 7.601130 GGCTTTTTAAACGATTATTTTCCTGGT 59.399 33.333 0.00 0.00 0.00 4.00
240 241 7.201401 CGGCTTTTTAAACGATTATTTTCCTGG 60.201 37.037 0.00 0.00 0.00 4.45
241 242 7.539366 TCGGCTTTTTAAACGATTATTTTCCTG 59.461 33.333 0.00 0.00 0.00 3.86
242 243 7.595604 TCGGCTTTTTAAACGATTATTTTCCT 58.404 30.769 0.00 0.00 0.00 3.36
243 244 7.800015 TCGGCTTTTTAAACGATTATTTTCC 57.200 32.000 0.00 0.00 0.00 3.13
245 246 9.852481 GTTTTCGGCTTTTTAAACGATTATTTT 57.148 25.926 0.00 0.00 35.10 1.82
254 255 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
255 256 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
256 257 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
257 258 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
258 259 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
259 260 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
260 261 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
261 262 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
264 265 2.968330 TTTTCCGCACGCGTTTTCGG 62.968 55.000 28.08 28.08 44.29 4.30
266 267 1.125270 ATTTTTCCGCACGCGTTTTC 58.875 45.000 10.22 0.04 37.81 2.29
267 268 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
268 269 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
269 270 2.402640 TTTATTTTTCCGCACGCGTT 57.597 40.000 10.22 0.00 37.81 4.84
270 271 2.402640 TTTTATTTTTCCGCACGCGT 57.597 40.000 5.58 5.58 37.81 6.01
288 289 6.406961 GGACACTCCCTTCAGATTTTGTTTTT 60.407 38.462 0.00 0.00 0.00 1.94
289 290 5.069119 GGACACTCCCTTCAGATTTTGTTTT 59.931 40.000 0.00 0.00 0.00 2.43
290 291 4.584743 GGACACTCCCTTCAGATTTTGTTT 59.415 41.667 0.00 0.00 0.00 2.83
291 292 4.145052 GGACACTCCCTTCAGATTTTGTT 58.855 43.478 0.00 0.00 0.00 2.83
292 293 3.138283 TGGACACTCCCTTCAGATTTTGT 59.862 43.478 0.00 0.00 35.03 2.83
293 294 3.754965 TGGACACTCCCTTCAGATTTTG 58.245 45.455 0.00 0.00 35.03 2.44
294 295 3.652869 TCTGGACACTCCCTTCAGATTTT 59.347 43.478 0.00 0.00 35.03 1.82
295 296 3.251484 TCTGGACACTCCCTTCAGATTT 58.749 45.455 0.00 0.00 35.03 2.17
296 297 2.836981 CTCTGGACACTCCCTTCAGATT 59.163 50.000 0.00 0.00 35.03 2.40
297 298 2.465813 CTCTGGACACTCCCTTCAGAT 58.534 52.381 0.00 0.00 35.03 2.90
298 299 1.930251 CTCTGGACACTCCCTTCAGA 58.070 55.000 0.00 0.00 35.03 3.27
299 300 0.248843 GCTCTGGACACTCCCTTCAG 59.751 60.000 0.00 0.00 35.03 3.02
300 301 1.536073 CGCTCTGGACACTCCCTTCA 61.536 60.000 0.00 0.00 35.03 3.02
301 302 1.216710 CGCTCTGGACACTCCCTTC 59.783 63.158 0.00 0.00 35.03 3.46
302 303 2.948720 GCGCTCTGGACACTCCCTT 61.949 63.158 0.00 0.00 35.03 3.95
303 304 3.386237 GCGCTCTGGACACTCCCT 61.386 66.667 0.00 0.00 35.03 4.20
304 305 4.803426 CGCGCTCTGGACACTCCC 62.803 72.222 5.56 0.00 35.03 4.30
305 306 3.749064 TCGCGCTCTGGACACTCC 61.749 66.667 5.56 0.00 36.96 3.85
306 307 2.505118 GTCGCGCTCTGGACACTC 60.505 66.667 5.56 0.00 33.41 3.51
307 308 3.295273 TGTCGCGCTCTGGACACT 61.295 61.111 11.17 0.00 38.19 3.55
309 310 4.700365 CGTGTCGCGCTCTGGACA 62.700 66.667 11.17 11.17 40.63 4.02
310 311 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
311 312 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
319 320 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
320 321 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
321 322 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
322 323 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
323 324 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
324 325 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
325 326 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
326 327 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
327 328 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
328 329 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
329 330 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
330 331 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
331 332 2.960957 TAGCGCGCTCTCAGCCATTC 62.961 60.000 40.23 0.00 38.18 2.67
332 333 2.578163 TTAGCGCGCTCTCAGCCATT 62.578 55.000 40.23 12.72 38.18 3.16
333 334 2.374830 ATTAGCGCGCTCTCAGCCAT 62.375 55.000 40.23 13.60 38.18 4.40
334 335 2.578163 AATTAGCGCGCTCTCAGCCA 62.578 55.000 40.23 16.36 38.18 4.75
335 336 1.884926 AATTAGCGCGCTCTCAGCC 60.885 57.895 40.23 1.45 38.18 4.85
336 337 1.275066 CAATTAGCGCGCTCTCAGC 59.725 57.895 40.23 2.23 38.02 4.26
337 338 1.930100 CCAATTAGCGCGCTCTCAG 59.070 57.895 40.23 24.86 0.00 3.35
338 339 2.173669 GCCAATTAGCGCGCTCTCA 61.174 57.895 40.23 23.40 0.00 3.27
339 340 2.628657 GCCAATTAGCGCGCTCTC 59.371 61.111 40.23 16.86 0.00 3.20
347 348 2.187707 CAACAATCAGCGCCAATTAGC 58.812 47.619 2.29 0.00 0.00 3.09
348 349 2.187707 GCAACAATCAGCGCCAATTAG 58.812 47.619 2.29 2.43 0.00 1.73
349 350 2.276472 GCAACAATCAGCGCCAATTA 57.724 45.000 2.29 0.00 0.00 1.40
350 351 3.126729 GCAACAATCAGCGCCAATT 57.873 47.368 2.29 0.46 0.00 2.32
351 352 4.895854 GCAACAATCAGCGCCAAT 57.104 50.000 2.29 0.00 0.00 3.16
357 358 1.427020 GAGCCTCGCAACAATCAGC 59.573 57.895 0.00 0.00 0.00 4.26
358 359 1.372087 GGGAGCCTCGCAACAATCAG 61.372 60.000 3.57 0.00 0.00 2.90
359 360 1.377202 GGGAGCCTCGCAACAATCA 60.377 57.895 3.57 0.00 0.00 2.57
360 361 0.178068 TAGGGAGCCTCGCAACAATC 59.822 55.000 11.67 0.00 34.61 2.67
361 362 0.618458 TTAGGGAGCCTCGCAACAAT 59.382 50.000 11.67 0.00 34.61 2.71
362 363 0.036388 CTTAGGGAGCCTCGCAACAA 60.036 55.000 11.67 1.52 34.61 2.83
363 364 1.596934 CTTAGGGAGCCTCGCAACA 59.403 57.895 11.67 0.00 34.61 3.33
364 365 1.153349 CCTTAGGGAGCCTCGCAAC 60.153 63.158 11.67 0.00 34.61 4.17
365 366 1.305802 TCCTTAGGGAGCCTCGCAA 60.306 57.895 11.67 3.01 36.57 4.85
366 367 2.362963 TCCTTAGGGAGCCTCGCA 59.637 61.111 11.67 0.00 36.57 5.10
374 375 0.394762 TAACGAGCGCTCCTTAGGGA 60.395 55.000 30.66 8.40 37.88 4.20
375 376 0.458669 TTAACGAGCGCTCCTTAGGG 59.541 55.000 30.66 17.99 38.66 3.53
376 377 1.134560 AGTTAACGAGCGCTCCTTAGG 59.865 52.381 30.66 18.71 0.00 2.69
377 378 2.563471 AGTTAACGAGCGCTCCTTAG 57.437 50.000 30.66 19.09 0.00 2.18
378 379 3.012518 ACTAGTTAACGAGCGCTCCTTA 58.987 45.455 30.66 25.00 0.00 2.69
379 380 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
380 381 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
381 382 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
382 383 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
383 384 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
384 385 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
385 386 1.918609 GGAGCAACTAGTTAACGAGCG 59.081 52.381 14.82 8.20 0.00 5.03
386 387 2.269172 GGGAGCAACTAGTTAACGAGC 58.731 52.381 14.82 7.28 0.00 5.03
387 388 2.734492 CGGGGAGCAACTAGTTAACGAG 60.734 54.545 13.50 13.50 0.00 4.18
388 389 1.203052 CGGGGAGCAACTAGTTAACGA 59.797 52.381 8.04 0.00 0.00 3.85
389 390 1.067354 ACGGGGAGCAACTAGTTAACG 60.067 52.381 8.04 9.06 0.00 3.18
390 391 2.233186 AGACGGGGAGCAACTAGTTAAC 59.767 50.000 8.04 3.72 0.00 2.01
391 392 2.532843 AGACGGGGAGCAACTAGTTAA 58.467 47.619 8.04 0.00 0.00 2.01
392 393 2.226962 AGACGGGGAGCAACTAGTTA 57.773 50.000 8.04 0.00 0.00 2.24
393 394 2.226962 TAGACGGGGAGCAACTAGTT 57.773 50.000 1.12 1.12 0.00 2.24
394 395 2.226962 TTAGACGGGGAGCAACTAGT 57.773 50.000 0.00 0.00 0.00 2.57
395 396 2.232941 TGTTTAGACGGGGAGCAACTAG 59.767 50.000 0.00 0.00 0.00 2.57
396 397 2.232941 CTGTTTAGACGGGGAGCAACTA 59.767 50.000 0.00 0.00 0.00 2.24
397 398 1.002087 CTGTTTAGACGGGGAGCAACT 59.998 52.381 0.00 0.00 0.00 3.16
398 399 1.439679 CTGTTTAGACGGGGAGCAAC 58.560 55.000 0.00 0.00 0.00 4.17
399 400 0.321298 GCTGTTTAGACGGGGAGCAA 60.321 55.000 0.00 0.00 32.54 3.91
400 401 1.295423 GCTGTTTAGACGGGGAGCA 59.705 57.895 0.00 0.00 32.54 4.26
401 402 1.449778 GGCTGTTTAGACGGGGAGC 60.450 63.158 0.00 0.00 32.54 4.70
402 403 1.221021 GGGCTGTTTAGACGGGGAG 59.779 63.158 0.00 0.00 30.29 4.30
403 404 2.652095 CGGGCTGTTTAGACGGGGA 61.652 63.158 0.00 0.00 30.29 4.81
404 405 2.125269 CGGGCTGTTTAGACGGGG 60.125 66.667 0.00 0.00 30.29 5.73
405 406 1.004200 AACGGGCTGTTTAGACGGG 60.004 57.895 5.72 0.00 37.59 5.28
406 407 1.017701 GGAACGGGCTGTTTAGACGG 61.018 60.000 13.88 0.00 42.09 4.79
407 408 1.017701 GGGAACGGGCTGTTTAGACG 61.018 60.000 13.88 0.00 42.09 4.18
408 409 0.323957 AGGGAACGGGCTGTTTAGAC 59.676 55.000 13.88 0.00 42.09 2.59
409 410 1.002773 GAAGGGAACGGGCTGTTTAGA 59.997 52.381 13.88 0.00 42.09 2.10
410 411 1.450025 GAAGGGAACGGGCTGTTTAG 58.550 55.000 13.88 0.00 42.09 1.85
411 412 0.037160 GGAAGGGAACGGGCTGTTTA 59.963 55.000 13.88 0.00 42.09 2.01
412 413 1.228459 GGAAGGGAACGGGCTGTTT 60.228 57.895 13.88 0.00 42.09 2.83
413 414 2.434774 GGAAGGGAACGGGCTGTT 59.565 61.111 12.39 12.39 45.61 3.16
414 415 3.647771 GGGAAGGGAACGGGCTGT 61.648 66.667 0.00 0.00 0.00 4.40
415 416 3.646715 TGGGAAGGGAACGGGCTG 61.647 66.667 0.00 0.00 0.00 4.85
416 417 3.647771 GTGGGAAGGGAACGGGCT 61.648 66.667 0.00 0.00 0.00 5.19
417 418 3.961414 TGTGGGAAGGGAACGGGC 61.961 66.667 0.00 0.00 0.00 6.13
418 419 2.033602 GTGTGGGAAGGGAACGGG 59.966 66.667 0.00 0.00 0.00 5.28
419 420 2.358247 CGTGTGGGAAGGGAACGG 60.358 66.667 0.00 0.00 0.00 4.44
420 421 2.358247 CCGTGTGGGAAGGGAACG 60.358 66.667 0.00 0.00 38.47 3.95
431 432 2.281484 CCCAACCAGACCCGTGTG 60.281 66.667 0.00 0.00 0.00 3.82
432 433 4.265056 GCCCAACCAGACCCGTGT 62.265 66.667 0.00 0.00 0.00 4.49
434 435 3.857521 TAGGCCCAACCAGACCCGT 62.858 63.158 0.00 0.00 43.14 5.28
435 436 1.921869 ATTAGGCCCAACCAGACCCG 61.922 60.000 0.00 0.00 43.14 5.28
436 437 0.395724 CATTAGGCCCAACCAGACCC 60.396 60.000 0.00 0.00 43.14 4.46
437 438 0.395724 CCATTAGGCCCAACCAGACC 60.396 60.000 0.00 0.00 43.14 3.85
438 439 0.623723 TCCATTAGGCCCAACCAGAC 59.376 55.000 0.00 0.00 43.14 3.51
439 440 0.918983 CTCCATTAGGCCCAACCAGA 59.081 55.000 0.00 0.00 43.14 3.86
440 441 0.106519 CCTCCATTAGGCCCAACCAG 60.107 60.000 0.00 0.00 43.14 4.00
441 442 2.006748 CCTCCATTAGGCCCAACCA 58.993 57.895 0.00 0.00 43.14 3.67
450 451 2.890311 TGTGTTTGGTTGCCTCCATTAG 59.110 45.455 0.00 0.00 37.33 1.73
451 452 2.625790 GTGTGTTTGGTTGCCTCCATTA 59.374 45.455 0.00 0.00 37.33 1.90
452 453 1.412343 GTGTGTTTGGTTGCCTCCATT 59.588 47.619 0.00 0.00 37.33 3.16
453 454 1.039856 GTGTGTTTGGTTGCCTCCAT 58.960 50.000 0.00 0.00 37.33 3.41
454 455 1.040339 GGTGTGTTTGGTTGCCTCCA 61.040 55.000 0.00 0.00 35.49 3.86
455 456 1.739667 GGTGTGTTTGGTTGCCTCC 59.260 57.895 0.00 0.00 0.00 4.30
456 457 0.755327 AGGGTGTGTTTGGTTGCCTC 60.755 55.000 0.00 0.00 0.00 4.70
457 458 0.325203 AAGGGTGTGTTTGGTTGCCT 60.325 50.000 0.00 0.00 0.00 4.75
458 459 1.339929 CTAAGGGTGTGTTTGGTTGCC 59.660 52.381 0.00 0.00 0.00 4.52
459 460 2.028876 ACTAAGGGTGTGTTTGGTTGC 58.971 47.619 0.00 0.00 0.00 4.17
460 461 6.399639 AAATACTAAGGGTGTGTTTGGTTG 57.600 37.500 0.00 0.00 29.84 3.77
461 462 5.537295 GGAAATACTAAGGGTGTGTTTGGTT 59.463 40.000 0.00 0.00 30.86 3.67
462 463 5.074804 GGAAATACTAAGGGTGTGTTTGGT 58.925 41.667 0.00 0.00 30.86 3.67
463 464 5.074115 TGGAAATACTAAGGGTGTGTTTGG 58.926 41.667 0.00 0.00 30.86 3.28
464 465 5.183140 CCTGGAAATACTAAGGGTGTGTTTG 59.817 44.000 0.00 0.00 30.86 2.93
465 466 5.163023 ACCTGGAAATACTAAGGGTGTGTTT 60.163 40.000 0.00 0.00 33.87 2.83
466 467 4.352893 ACCTGGAAATACTAAGGGTGTGTT 59.647 41.667 0.00 0.00 33.87 3.32
467 468 3.914435 ACCTGGAAATACTAAGGGTGTGT 59.086 43.478 0.00 0.00 33.87 3.72
468 469 4.569719 ACCTGGAAATACTAAGGGTGTG 57.430 45.455 0.00 0.00 33.87 3.82
469 470 4.263771 CCAACCTGGAAATACTAAGGGTGT 60.264 45.833 0.00 0.00 44.57 4.16
470 471 4.270008 CCAACCTGGAAATACTAAGGGTG 58.730 47.826 0.00 0.00 45.45 4.61
471 472 3.268595 CCCAACCTGGAAATACTAAGGGT 59.731 47.826 0.00 0.00 40.96 4.34
472 473 3.898482 CCCAACCTGGAAATACTAAGGG 58.102 50.000 0.00 0.00 40.96 3.95
473 474 3.288092 GCCCAACCTGGAAATACTAAGG 58.712 50.000 0.00 0.00 40.96 2.69
474 475 3.288092 GGCCCAACCTGGAAATACTAAG 58.712 50.000 0.00 0.00 40.96 2.18
578 579 7.452813 AGCAAAAGGAAGAGAACCTGAAATATT 59.547 33.333 0.00 0.00 37.85 1.28
629 633 3.117963 TGGAAACCTACCCGTGAAAAAGA 60.118 43.478 0.00 0.00 0.00 2.52
810 817 1.556911 GGATGAGGAGTGGAAAGCTGA 59.443 52.381 0.00 0.00 0.00 4.26
826 833 0.609151 TGCTTTTGTGGCCATGGATG 59.391 50.000 18.40 0.62 0.00 3.51
827 834 1.350071 TTGCTTTTGTGGCCATGGAT 58.650 45.000 18.40 0.00 0.00 3.41
828 835 1.070445 CTTTGCTTTTGTGGCCATGGA 59.930 47.619 18.40 0.00 0.00 3.41
882 889 1.670083 GCGCCGTTATATGGGGGAC 60.670 63.158 0.00 0.38 37.65 4.46
886 893 2.325082 GGCAGCGCCGTTATATGGG 61.325 63.158 2.29 0.00 39.62 4.00
952 978 1.033574 GATCTACTACGTGCCTGGCT 58.966 55.000 21.03 1.67 0.00 4.75
953 979 0.032267 GGATCTACTACGTGCCTGGC 59.968 60.000 12.87 12.87 0.00 4.85
954 980 0.674534 GGGATCTACTACGTGCCTGG 59.325 60.000 0.00 0.00 0.00 4.45
955 981 1.338337 CTGGGATCTACTACGTGCCTG 59.662 57.143 0.00 0.00 0.00 4.85
956 982 1.214673 TCTGGGATCTACTACGTGCCT 59.785 52.381 0.00 0.00 0.00 4.75
957 983 1.337387 GTCTGGGATCTACTACGTGCC 59.663 57.143 0.00 0.00 0.00 5.01
958 984 1.337387 GGTCTGGGATCTACTACGTGC 59.663 57.143 0.00 0.00 0.00 5.34
959 985 1.602851 CGGTCTGGGATCTACTACGTG 59.397 57.143 0.00 0.00 0.00 4.49
960 986 1.211457 ACGGTCTGGGATCTACTACGT 59.789 52.381 0.00 0.00 0.00 3.57
961 987 1.964552 ACGGTCTGGGATCTACTACG 58.035 55.000 0.00 0.00 0.00 3.51
962 988 2.805099 CGTACGGTCTGGGATCTACTAC 59.195 54.545 7.57 0.00 0.00 2.73
963 989 2.435805 ACGTACGGTCTGGGATCTACTA 59.564 50.000 21.06 0.00 0.00 1.82
964 990 1.211457 ACGTACGGTCTGGGATCTACT 59.789 52.381 21.06 0.00 0.00 2.57
965 991 1.601430 GACGTACGGTCTGGGATCTAC 59.399 57.143 21.06 0.00 42.62 2.59
966 992 1.475751 GGACGTACGGTCTGGGATCTA 60.476 57.143 21.06 0.00 45.35 1.98
967 993 0.750911 GGACGTACGGTCTGGGATCT 60.751 60.000 21.06 0.00 45.35 2.75
968 994 1.033746 TGGACGTACGGTCTGGGATC 61.034 60.000 21.06 4.95 45.35 3.36
969 995 0.612732 TTGGACGTACGGTCTGGGAT 60.613 55.000 21.06 0.00 45.35 3.85
979 1005 3.602483 TGGGAGCTTAATTTGGACGTAC 58.398 45.455 0.00 0.00 0.00 3.67
980 1006 3.985019 TGGGAGCTTAATTTGGACGTA 57.015 42.857 0.00 0.00 0.00 3.57
999 1026 2.810274 CTGATATTTGCCCTCGTCCATG 59.190 50.000 0.00 0.00 0.00 3.66
1305 1335 4.341783 ACCAGCAGCAGAGCCACC 62.342 66.667 0.00 0.00 34.23 4.61
1390 1423 4.602340 TCGGGATACATAGCTTTCCTTC 57.398 45.455 0.00 0.00 39.74 3.46
1391 1424 4.804261 GCATCGGGATACATAGCTTTCCTT 60.804 45.833 0.00 0.00 39.74 3.36
1392 1425 3.307059 GCATCGGGATACATAGCTTTCCT 60.307 47.826 0.00 0.00 39.74 3.36
1466 1510 1.552578 TTTGCTTCATCATGCAGGCT 58.447 45.000 0.00 0.00 40.46 4.58
1468 1512 5.412640 TGTTATTTTGCTTCATCATGCAGG 58.587 37.500 0.00 0.00 40.46 4.85
1523 1567 1.273327 CGGCCTCCAAAAGCAATTTCT 59.727 47.619 0.00 0.00 0.00 2.52
1632 1683 1.027357 CACACTTGCACTCTGCCTTT 58.973 50.000 0.00 0.00 44.23 3.11
1650 1701 6.880822 CGTATCTCGTCCTGAAAATTTACA 57.119 37.500 0.00 0.00 34.52 2.41
1668 1719 4.212214 GCCCTCATCTCATTTCAACGTATC 59.788 45.833 0.00 0.00 0.00 2.24
1671 1722 2.359900 GCCCTCATCTCATTTCAACGT 58.640 47.619 0.00 0.00 0.00 3.99
1673 1724 3.010200 AGGCCCTCATCTCATTTCAAC 57.990 47.619 0.00 0.00 0.00 3.18
1674 1725 3.359033 CAAGGCCCTCATCTCATTTCAA 58.641 45.455 0.00 0.00 0.00 2.69
1675 1726 2.947243 GCAAGGCCCTCATCTCATTTCA 60.947 50.000 0.00 0.00 0.00 2.69
1676 1727 1.680207 GCAAGGCCCTCATCTCATTTC 59.320 52.381 0.00 0.00 0.00 2.17
1677 1728 1.006281 TGCAAGGCCCTCATCTCATTT 59.994 47.619 0.00 0.00 0.00 2.32
1678 1729 0.627451 TGCAAGGCCCTCATCTCATT 59.373 50.000 0.00 0.00 0.00 2.57
1679 1730 0.627451 TTGCAAGGCCCTCATCTCAT 59.373 50.000 0.00 0.00 0.00 2.90
1683 1734 1.895131 TCTTTTTGCAAGGCCCTCATC 59.105 47.619 0.00 0.00 0.00 2.92
1692 1743 2.158914 AGGCCCTTTGTCTTTTTGCAAG 60.159 45.455 0.00 0.00 0.00 4.01
1698 1749 1.494960 TGCAAGGCCCTTTGTCTTTT 58.505 45.000 0.00 0.00 0.00 2.27
1699 1750 1.494960 TTGCAAGGCCCTTTGTCTTT 58.505 45.000 0.00 0.00 0.00 2.52
1700 1751 1.494960 TTTGCAAGGCCCTTTGTCTT 58.505 45.000 0.00 0.00 0.00 3.01
1701 1752 1.494960 TTTTGCAAGGCCCTTTGTCT 58.505 45.000 0.00 0.00 0.00 3.41
1702 1753 2.158971 TCTTTTTGCAAGGCCCTTTGTC 60.159 45.455 0.00 0.00 0.00 3.18
1703 1754 1.836802 TCTTTTTGCAAGGCCCTTTGT 59.163 42.857 0.00 0.00 0.00 2.83
1704 1755 2.212652 GTCTTTTTGCAAGGCCCTTTG 58.787 47.619 0.00 0.00 0.00 2.77
1705 1756 1.836802 TGTCTTTTTGCAAGGCCCTTT 59.163 42.857 0.00 0.00 0.00 3.11
1706 1757 1.494960 TGTCTTTTTGCAAGGCCCTT 58.505 45.000 0.00 0.00 0.00 3.95
1707 1758 1.494960 TTGTCTTTTTGCAAGGCCCT 58.505 45.000 0.00 0.00 0.00 5.19
1708 1759 2.323968 TTTGTCTTTTTGCAAGGCCC 57.676 45.000 0.00 0.00 0.00 5.80
1709 1760 3.495753 CAGATTTGTCTTTTTGCAAGGCC 59.504 43.478 0.00 0.00 0.00 5.19
1710 1761 4.370917 TCAGATTTGTCTTTTTGCAAGGC 58.629 39.130 0.00 0.00 0.00 4.35
1711 1762 6.044682 AGTTCAGATTTGTCTTTTTGCAAGG 58.955 36.000 0.00 0.00 0.00 3.61
1712 1763 7.529880 AAGTTCAGATTTGTCTTTTTGCAAG 57.470 32.000 0.00 0.00 0.00 4.01
1713 1764 7.903995 AAAGTTCAGATTTGTCTTTTTGCAA 57.096 28.000 0.00 0.00 31.35 4.08
1714 1765 7.903995 AAAAGTTCAGATTTGTCTTTTTGCA 57.096 28.000 12.27 0.00 36.84 4.08
1752 1804 9.823647 CAAGTTACTAGTATGTGAGGATGAATT 57.176 33.333 2.79 0.00 0.00 2.17
1793 1845 5.771666 AGGATGGAATACATTGAAATGCGAT 59.228 36.000 2.92 0.00 40.72 4.58
1811 1863 5.571357 GCGTGTGTGTAAAATTTTAGGATGG 59.429 40.000 10.92 0.24 0.00 3.51
1930 1984 4.381292 GGAGAATGACATTTTGGCTCTTGG 60.381 45.833 1.39 0.00 0.00 3.61
1932 1986 4.670765 AGGAGAATGACATTTTGGCTCTT 58.329 39.130 1.39 0.00 0.00 2.85
2053 2112 6.385649 TCACCCAGACTGTAAACATTTTTC 57.614 37.500 0.93 0.00 0.00 2.29
2065 2124 1.151668 CTTCGCTTTCACCCAGACTG 58.848 55.000 0.00 0.00 0.00 3.51
2096 2155 5.853936 CCATATGGGAATTGTCTCGTCTTA 58.146 41.667 14.52 0.00 40.01 2.10
2097 2156 4.708177 CCATATGGGAATTGTCTCGTCTT 58.292 43.478 14.52 0.00 40.01 3.01
2116 2175 7.296628 CCATAGATCCCCAATAATAGATCCCAT 59.703 40.741 0.00 0.00 36.59 4.00
2196 2255 6.481134 CGAATATATGAAGATTTGCATCCGG 58.519 40.000 0.00 0.00 0.00 5.14
2198 2257 6.261118 GGCGAATATATGAAGATTTGCATCC 58.739 40.000 9.40 0.00 42.93 3.51
2200 2259 5.412594 ACGGCGAATATATGAAGATTTGCAT 59.587 36.000 16.62 0.00 42.93 3.96
2201 2260 4.754618 ACGGCGAATATATGAAGATTTGCA 59.245 37.500 16.62 0.00 42.93 4.08
2205 2265 4.928661 GCACGGCGAATATATGAAGATT 57.071 40.909 16.62 0.00 0.00 2.40
2220 2280 0.529773 TATCTTGATCACCGCACGGC 60.530 55.000 9.43 0.00 39.32 5.68
2221 2281 1.067060 TCTATCTTGATCACCGCACGG 59.933 52.381 7.71 7.71 42.03 4.94
2222 2282 2.223595 ACTCTATCTTGATCACCGCACG 60.224 50.000 0.00 0.00 0.00 5.34
2254 2314 2.526077 TCGTCATCGTCAATACTGTGC 58.474 47.619 0.00 0.00 38.33 4.57
2255 2315 3.759418 ACTCGTCATCGTCAATACTGTG 58.241 45.455 0.00 0.00 38.33 3.66
2296 2356 2.175202 GGTATCCAGCATCGAGATCCT 58.825 52.381 0.00 0.00 0.00 3.24
2299 2359 1.621992 ACGGTATCCAGCATCGAGAT 58.378 50.000 0.00 0.00 0.00 2.75
2303 2363 1.934589 TTGAACGGTATCCAGCATCG 58.065 50.000 0.00 0.00 0.00 3.84
2336 2396 1.412079 TGCCAAACAGAACATGCCTT 58.588 45.000 0.00 0.00 0.00 4.35
2342 2402 2.805671 CGTCACTATGCCAAACAGAACA 59.194 45.455 0.00 0.00 0.00 3.18
2344 2404 2.422597 CCGTCACTATGCCAAACAGAA 58.577 47.619 0.00 0.00 0.00 3.02
2345 2405 1.943968 GCCGTCACTATGCCAAACAGA 60.944 52.381 0.00 0.00 0.00 3.41
2352 2412 1.447140 TTGACGCCGTCACTATGCC 60.447 57.895 21.12 0.00 42.60 4.40
2357 2417 2.354305 GTCGTTGACGCCGTCACT 60.354 61.111 21.12 0.00 42.60 3.41
2359 2419 2.354188 CTGTCGTTGACGCCGTCA 60.354 61.111 17.22 17.22 41.09 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.