Multiple sequence alignment - TraesCS3D01G132900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G132900 chr3D 100.000 2448 0 0 1 2448 92369506 92367059 0.000000e+00 4521.0
1 TraesCS3D01G132900 chr3D 100.000 196 0 0 2726 2921 92366781 92366586 2.140000e-96 363.0
2 TraesCS3D01G132900 chr3D 86.424 302 33 4 2079 2379 92128237 92127943 1.010000e-84 324.0
3 TraesCS3D01G132900 chr3D 97.619 42 0 1 2035 2075 574112933 574112892 1.450000e-08 71.3
4 TraesCS3D01G132900 chr3D 97.436 39 1 0 695 733 45687195 45687157 1.880000e-07 67.6
5 TraesCS3D01G132900 chr3A 93.781 1608 67 9 420 2009 545900929 545899337 0.000000e+00 2385.0
6 TraesCS3D01G132900 chr3A 83.562 365 43 10 1 353 545902791 545902432 2.810000e-85 326.0
7 TraesCS3D01G132900 chr3A 85.274 292 39 4 1018 1306 57226878 57226588 6.120000e-77 298.0
8 TraesCS3D01G132900 chr3A 91.837 98 8 0 327 424 545902427 545902330 1.410000e-28 137.0
9 TraesCS3D01G132900 chr3A 97.436 39 1 0 695 733 57245073 57245035 1.880000e-07 67.6
10 TraesCS3D01G132900 chr3A 93.182 44 2 1 2033 2075 587969363 587969406 2.430000e-06 63.9
11 TraesCS3D01G132900 chr3B 90.530 1605 96 21 595 2153 141922339 141920745 0.000000e+00 2071.0
12 TraesCS3D01G132900 chr3B 94.118 272 13 2 299 570 141924244 141923976 7.530000e-111 411.0
13 TraesCS3D01G132900 chr3B 94.611 167 8 1 1 166 141924420 141924254 1.040000e-64 257.0
14 TraesCS3D01G132900 chr2A 84.337 83 12 1 163 244 397943114 397943196 2.410000e-11 80.5
15 TraesCS3D01G132900 chr2A 93.182 44 2 1 2039 2081 734597129 734597086 2.430000e-06 63.9
16 TraesCS3D01G132900 chr2D 94.118 51 2 1 242 291 302238191 302238241 3.120000e-10 76.8
17 TraesCS3D01G132900 chr2D 97.500 40 1 0 2042 2081 31733380 31733419 5.220000e-08 69.4
18 TraesCS3D01G132900 chr7D 92.453 53 3 1 243 294 563531381 563531433 1.120000e-09 75.0
19 TraesCS3D01G132900 chr7D 89.655 58 3 3 242 299 14440351 14440297 1.450000e-08 71.3
20 TraesCS3D01G132900 chr7D 89.655 58 3 3 242 299 489012687 489012633 1.450000e-08 71.3
21 TraesCS3D01G132900 chr7B 92.157 51 3 1 242 291 324138661 324138711 1.450000e-08 71.3
22 TraesCS3D01G132900 chr7B 82.812 64 10 1 182 244 695696884 695696821 4.070000e-04 56.5
23 TraesCS3D01G132900 chr7A 87.302 63 7 1 242 303 379029976 379030038 1.450000e-08 71.3
24 TraesCS3D01G132900 chr7A 91.304 46 3 1 2037 2081 22166129 22166084 8.740000e-06 62.1
25 TraesCS3D01G132900 chr5B 83.544 79 6 7 242 315 595294836 595294760 1.880000e-07 67.6
26 TraesCS3D01G132900 chr5B 97.500 40 0 1 2037 2075 605787328 605787367 1.880000e-07 67.6
27 TraesCS3D01G132900 chr5B 81.176 85 12 2 163 244 95385519 95385436 6.760000e-07 65.8
28 TraesCS3D01G132900 chr4A 83.784 74 9 3 224 296 743665199 743665270 1.880000e-07 67.6
29 TraesCS3D01G132900 chr4A 95.238 42 1 1 2037 2077 113335644 113335603 6.760000e-07 65.8
30 TraesCS3D01G132900 chr6D 97.436 39 0 1 2037 2074 426293690 426293728 6.760000e-07 65.8
31 TraesCS3D01G132900 chr6B 83.333 72 8 3 222 292 620860196 620860264 2.430000e-06 63.9
32 TraesCS3D01G132900 chr2B 80.233 86 12 4 163 244 564860602 564860686 3.140000e-05 60.2
33 TraesCS3D01G132900 chr5D 87.037 54 4 3 2025 2075 361186010 361186063 1.130000e-04 58.4
34 TraesCS3D01G132900 chr5D 94.286 35 2 0 210 244 83902824 83902858 1.000000e-03 54.7
35 TraesCS3D01G132900 chr5A 78.824 85 15 2 163 244 27727717 27727633 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G132900 chr3D 92366586 92369506 2920 True 2442.000000 4521 100.000000 1 2921 2 chr3D.!!$R4 2920
1 TraesCS3D01G132900 chr3A 545899337 545902791 3454 True 949.333333 2385 89.726667 1 2009 3 chr3A.!!$R3 2008
2 TraesCS3D01G132900 chr3B 141920745 141924420 3675 True 913.000000 2071 93.086333 1 2153 3 chr3B.!!$R1 2152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 3651 0.647410 CTGGTTGAGCTGAATACGCG 59.353 55.0 3.53 3.53 0.0 6.01 F
1413 4488 0.393537 CAATGGACCCCACTCTCTGC 60.394 60.0 0.00 0.00 35.8 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 4804 0.165944 GAAAATCAGACCACGCACGG 59.834 55.0 0.00 0.00 0.0 4.94 R
2834 5947 0.027586 GTGTTGCAACCGTCAGTGAC 59.972 55.0 26.14 13.56 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 7.989826 ACATATAGTGAAAGAACAGATTTGGC 58.010 34.615 0.00 0.00 0.00 4.52
170 172 6.290294 AGCCATAAACTTTCGTACTTCCTA 57.710 37.500 0.00 0.00 0.00 2.94
256 269 9.125026 ACATATTTTAGAGTTCATGGTGGAATC 57.875 33.333 0.00 0.00 0.00 2.52
261 274 7.733773 TTAGAGTTCATGGTGGAATCTCTAA 57.266 36.000 15.66 15.66 40.37 2.10
265 278 7.609532 AGAGTTCATGGTGGAATCTCTAAAAAG 59.390 37.037 0.00 0.00 35.48 2.27
289 302 7.938715 AGACTTATATTTACGAACGGATGAGT 58.061 34.615 0.00 0.00 0.00 3.41
295 308 6.690194 ATTTACGAACGGATGAGTAGTACT 57.310 37.500 1.37 1.37 0.00 2.73
304 317 4.574013 CGGATGAGTAGTACTAACCTTCGT 59.426 45.833 3.61 2.27 0.00 3.85
325 338 9.455847 CTTCGTTTTTCTCTCTTTGATTGAATT 57.544 29.630 0.00 0.00 0.00 2.17
383 427 6.319048 ACATTGTGGTCTCTTTCTATCCAT 57.681 37.500 0.00 0.00 0.00 3.41
384 428 6.725364 ACATTGTGGTCTCTTTCTATCCATT 58.275 36.000 0.00 0.00 0.00 3.16
397 441 7.708322 TCTTTCTATCCATTCTTCTCGTCATTG 59.292 37.037 0.00 0.00 0.00 2.82
399 443 4.760530 ATCCATTCTTCTCGTCATTGGA 57.239 40.909 0.00 0.00 36.32 3.53
469 1918 4.023622 TGCATCGATCTCTTACTCTACTGC 60.024 45.833 0.00 0.00 0.00 4.40
590 3651 0.647410 CTGGTTGAGCTGAATACGCG 59.353 55.000 3.53 3.53 0.00 6.01
655 3717 5.621197 TTTCCATATATTATGCACGTGGC 57.379 39.130 18.88 10.30 45.13 5.01
722 3784 5.612688 AGAAAGGGAGGGAGCATATTTATCA 59.387 40.000 0.00 0.00 0.00 2.15
815 3878 5.163269 TGACCATATGGAGATCTCTTTGGTG 60.163 44.000 28.77 18.71 36.41 4.17
823 3886 3.256704 AGATCTCTTTGGTGGTGGGTAA 58.743 45.455 0.00 0.00 0.00 2.85
886 3950 4.202202 CCCAAGTGTTGCCATTTTGTAAGA 60.202 41.667 0.00 0.00 0.00 2.10
1140 4204 4.699522 GGCACCGTCACCACCCTC 62.700 72.222 0.00 0.00 0.00 4.30
1318 4393 1.136872 CGCCAACAACAACAACACCG 61.137 55.000 0.00 0.00 0.00 4.94
1413 4488 0.393537 CAATGGACCCCACTCTCTGC 60.394 60.000 0.00 0.00 35.80 4.26
1686 4761 1.374758 CGTCAAGGACCTGAGCACC 60.375 63.158 0.00 0.00 0.00 5.01
1708 4783 1.893786 CAGGAGAGGACGGTGAAGG 59.106 63.158 0.00 0.00 0.00 3.46
1727 4802 3.121030 CGGCAAGGAAGAGGTGCG 61.121 66.667 0.00 0.00 39.22 5.34
1728 4803 2.032681 GGCAAGGAAGAGGTGCGT 59.967 61.111 0.00 0.00 39.22 5.24
1729 4804 2.035442 GGCAAGGAAGAGGTGCGTC 61.035 63.158 0.00 0.00 39.22 5.19
1730 4805 2.035442 GCAAGGAAGAGGTGCGTCC 61.035 63.158 0.00 0.00 44.48 4.79
1733 4808 2.432628 GGAAGAGGTGCGTCCGTG 60.433 66.667 0.00 0.00 41.99 4.94
1734 4809 3.112709 GAAGAGGTGCGTCCGTGC 61.113 66.667 0.00 0.00 41.99 5.34
1772 4854 1.327303 TGGGTTTGGAATCACTGTGC 58.673 50.000 2.12 0.00 0.00 4.57
1773 4855 1.327303 GGGTTTGGAATCACTGTGCA 58.673 50.000 2.12 0.00 0.00 4.57
1806 4897 1.177895 TGCTTTTCGGAATGCAGGCA 61.178 50.000 12.70 0.00 39.95 4.75
1827 4918 1.300233 GGGGATACTCGCTGCTTCG 60.300 63.158 0.00 0.00 0.00 3.79
1843 4934 1.740332 TTCGCTCACGTCCAAGACCA 61.740 55.000 0.00 0.00 41.18 4.02
1860 4951 1.070758 ACCATGCTGACTGACGTCTTT 59.929 47.619 17.92 2.83 40.86 2.52
1976 5067 9.462606 TTCCAGAAAACTTCTTTAGAACTTTCT 57.537 29.630 13.81 13.81 39.37 2.52
1984 5075 9.930693 AACTTCTTTAGAACTTTCTGATACGAT 57.069 29.630 1.52 0.00 38.19 3.73
2026 5138 3.051032 ACTTATGAGAGGAAGGGGGATCA 60.051 47.826 0.00 0.00 0.00 2.92
2033 5145 4.581233 AGAGGAAGGGGGATCATGAATTA 58.419 43.478 0.00 0.00 0.00 1.40
2049 5161 5.041951 TGAATTATGGTGTCAAAACGCTC 57.958 39.130 0.00 0.00 36.14 5.03
2059 5172 9.772973 ATGGTGTCAAAACGCTCTTATATTATA 57.227 29.630 0.00 0.00 36.14 0.98
2061 5174 8.709646 GGTGTCAAAACGCTCTTATATTATAGG 58.290 37.037 0.00 0.00 36.14 2.57
2067 5180 6.680874 ACGCTCTTATATTATAGGACGGAG 57.319 41.667 15.28 0.00 0.00 4.63
2093 5206 5.315348 AGTAGGATATACGAGTCCAAGTCC 58.685 45.833 0.00 0.00 36.96 3.85
2096 5209 3.635373 GGATATACGAGTCCAAGTCCACA 59.365 47.826 0.00 0.00 34.57 4.17
2098 5211 2.806608 TACGAGTCCAAGTCCACAAC 57.193 50.000 0.00 0.00 0.00 3.32
2099 5212 1.120530 ACGAGTCCAAGTCCACAACT 58.879 50.000 0.00 0.00 41.10 3.16
2153 5266 6.946583 AGCTATCCATACGAGTTGGTATTCTA 59.053 38.462 0.00 0.00 35.64 2.10
2154 5267 7.121463 AGCTATCCATACGAGTTGGTATTCTAG 59.879 40.741 0.00 0.00 35.64 2.43
2155 5268 6.591750 ATCCATACGAGTTGGTATTCTAGG 57.408 41.667 0.00 0.00 35.64 3.02
2156 5269 5.452255 TCCATACGAGTTGGTATTCTAGGT 58.548 41.667 0.00 0.00 35.64 3.08
2157 5270 6.604171 TCCATACGAGTTGGTATTCTAGGTA 58.396 40.000 0.00 0.00 35.64 3.08
2158 5271 7.062322 TCCATACGAGTTGGTATTCTAGGTAA 58.938 38.462 0.00 0.00 35.64 2.85
2159 5272 7.727186 TCCATACGAGTTGGTATTCTAGGTAAT 59.273 37.037 0.00 0.00 35.64 1.89
2160 5273 8.365647 CCATACGAGTTGGTATTCTAGGTAATT 58.634 37.037 0.00 0.00 30.86 1.40
2161 5274 9.408069 CATACGAGTTGGTATTCTAGGTAATTC 57.592 37.037 0.00 0.00 30.86 2.17
2162 5275 6.501781 ACGAGTTGGTATTCTAGGTAATTCG 58.498 40.000 0.00 0.00 34.75 3.34
2163 5276 6.096001 ACGAGTTGGTATTCTAGGTAATTCGT 59.904 38.462 0.00 0.00 36.26 3.85
2164 5277 6.976925 CGAGTTGGTATTCTAGGTAATTCGTT 59.023 38.462 0.00 0.00 0.00 3.85
2165 5278 7.043590 CGAGTTGGTATTCTAGGTAATTCGTTG 60.044 40.741 0.00 0.00 0.00 4.10
2166 5279 7.618137 AGTTGGTATTCTAGGTAATTCGTTGT 58.382 34.615 0.00 0.00 0.00 3.32
2167 5280 8.098912 AGTTGGTATTCTAGGTAATTCGTTGTT 58.901 33.333 0.00 0.00 0.00 2.83
2168 5281 8.724229 GTTGGTATTCTAGGTAATTCGTTGTTT 58.276 33.333 0.00 0.00 0.00 2.83
2169 5282 9.941325 TTGGTATTCTAGGTAATTCGTTGTTTA 57.059 29.630 0.00 0.00 0.00 2.01
2170 5283 9.590451 TGGTATTCTAGGTAATTCGTTGTTTAG 57.410 33.333 0.00 0.00 0.00 1.85
2171 5284 9.591792 GGTATTCTAGGTAATTCGTTGTTTAGT 57.408 33.333 0.00 0.00 0.00 2.24
2173 5286 7.801547 TTCTAGGTAATTCGTTGTTTAGTCG 57.198 36.000 0.00 0.00 0.00 4.18
2174 5287 6.913170 TCTAGGTAATTCGTTGTTTAGTCGT 58.087 36.000 0.00 0.00 0.00 4.34
2175 5288 5.834239 AGGTAATTCGTTGTTTAGTCGTG 57.166 39.130 0.00 0.00 0.00 4.35
2176 5289 5.531634 AGGTAATTCGTTGTTTAGTCGTGA 58.468 37.500 0.00 0.00 0.00 4.35
2177 5290 6.161381 AGGTAATTCGTTGTTTAGTCGTGAT 58.839 36.000 0.00 0.00 0.00 3.06
2178 5291 7.315142 AGGTAATTCGTTGTTTAGTCGTGATA 58.685 34.615 0.00 0.00 0.00 2.15
2179 5292 7.814107 AGGTAATTCGTTGTTTAGTCGTGATAA 59.186 33.333 0.00 0.00 0.00 1.75
2180 5293 8.434661 GGTAATTCGTTGTTTAGTCGTGATAAA 58.565 33.333 0.00 0.00 0.00 1.40
2181 5294 9.962759 GTAATTCGTTGTTTAGTCGTGATAAAT 57.037 29.630 0.00 0.00 0.00 1.40
2185 5298 9.796062 TTCGTTGTTTAGTCGTGATAAATTAAC 57.204 29.630 0.00 0.00 0.00 2.01
2186 5299 8.155294 TCGTTGTTTAGTCGTGATAAATTAACG 58.845 33.333 19.88 19.88 41.12 3.18
2187 5300 8.155294 CGTTGTTTAGTCGTGATAAATTAACGA 58.845 33.333 20.48 0.00 41.58 3.85
2188 5301 9.456797 GTTGTTTAGTCGTGATAAATTAACGAG 57.543 33.333 0.75 0.00 46.01 4.18
2189 5302 8.969121 TGTTTAGTCGTGATAAATTAACGAGA 57.031 30.769 0.75 0.00 46.01 4.04
2190 5303 9.069078 TGTTTAGTCGTGATAAATTAACGAGAG 57.931 33.333 0.75 0.00 46.01 3.20
2191 5304 8.529911 GTTTAGTCGTGATAAATTAACGAGAGG 58.470 37.037 0.75 0.00 46.01 3.69
2192 5305 5.589192 AGTCGTGATAAATTAACGAGAGGG 58.411 41.667 0.75 0.00 46.01 4.30
2193 5306 4.208666 GTCGTGATAAATTAACGAGAGGGC 59.791 45.833 0.75 0.00 46.01 5.19
2194 5307 4.116961 CGTGATAAATTAACGAGAGGGCA 58.883 43.478 0.00 0.00 39.64 5.36
2195 5308 4.750098 CGTGATAAATTAACGAGAGGGCAT 59.250 41.667 0.00 0.00 39.64 4.40
2196 5309 5.333339 CGTGATAAATTAACGAGAGGGCATG 60.333 44.000 0.00 0.00 39.64 4.06
2197 5310 5.527582 GTGATAAATTAACGAGAGGGCATGT 59.472 40.000 0.00 0.00 0.00 3.21
2198 5311 6.038271 GTGATAAATTAACGAGAGGGCATGTT 59.962 38.462 0.00 0.00 0.00 2.71
2199 5312 6.601613 TGATAAATTAACGAGAGGGCATGTTT 59.398 34.615 0.00 0.00 0.00 2.83
2200 5313 4.965119 AATTAACGAGAGGGCATGTTTC 57.035 40.909 0.00 0.00 0.00 2.78
2201 5314 3.695830 TTAACGAGAGGGCATGTTTCT 57.304 42.857 0.00 0.00 0.00 2.52
2202 5315 2.568623 AACGAGAGGGCATGTTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
2203 5316 2.100605 ACGAGAGGGCATGTTTCTTC 57.899 50.000 0.00 0.00 0.00 2.87
2204 5317 1.625818 ACGAGAGGGCATGTTTCTTCT 59.374 47.619 0.00 0.00 0.00 2.85
2205 5318 2.005451 CGAGAGGGCATGTTTCTTCTG 58.995 52.381 0.00 0.00 0.00 3.02
2206 5319 1.742268 GAGAGGGCATGTTTCTTCTGC 59.258 52.381 0.00 0.00 35.16 4.26
2207 5320 0.449388 GAGGGCATGTTTCTTCTGCG 59.551 55.000 0.00 0.00 36.76 5.18
2208 5321 0.962356 AGGGCATGTTTCTTCTGCGG 60.962 55.000 0.00 0.00 36.76 5.69
2209 5322 0.960364 GGGCATGTTTCTTCTGCGGA 60.960 55.000 0.00 0.00 36.76 5.54
2210 5323 0.169009 GGCATGTTTCTTCTGCGGAC 59.831 55.000 0.00 0.00 36.76 4.79
2211 5324 1.160137 GCATGTTTCTTCTGCGGACT 58.840 50.000 0.00 0.00 0.00 3.85
2212 5325 1.135859 GCATGTTTCTTCTGCGGACTG 60.136 52.381 0.00 0.00 0.00 3.51
2213 5326 1.135859 CATGTTTCTTCTGCGGACTGC 60.136 52.381 0.00 0.00 46.70 4.40
2230 5343 3.003478 CGGTCGCTGCCGTAATTC 58.997 61.111 7.53 0.00 46.11 2.17
2231 5344 1.518572 CGGTCGCTGCCGTAATTCT 60.519 57.895 7.53 0.00 46.11 2.40
2232 5345 1.752501 CGGTCGCTGCCGTAATTCTG 61.753 60.000 7.53 0.00 46.11 3.02
2233 5346 1.348594 GTCGCTGCCGTAATTCTGC 59.651 57.895 0.00 0.00 35.54 4.26
2234 5347 1.813753 TCGCTGCCGTAATTCTGCC 60.814 57.895 0.00 0.00 35.54 4.85
2235 5348 2.106074 CGCTGCCGTAATTCTGCCA 61.106 57.895 0.00 0.00 0.00 4.92
2236 5349 1.643868 CGCTGCCGTAATTCTGCCAA 61.644 55.000 0.00 0.00 0.00 4.52
2237 5350 0.525761 GCTGCCGTAATTCTGCCAAA 59.474 50.000 0.00 0.00 0.00 3.28
2238 5351 1.134946 GCTGCCGTAATTCTGCCAAAT 59.865 47.619 0.00 0.00 0.00 2.32
2239 5352 2.417243 GCTGCCGTAATTCTGCCAAATT 60.417 45.455 0.00 0.00 33.54 1.82
2240 5353 3.181397 CTGCCGTAATTCTGCCAAATTG 58.819 45.455 4.19 0.00 31.50 2.32
2241 5354 1.926510 GCCGTAATTCTGCCAAATTGC 59.073 47.619 4.19 2.39 31.50 3.56
2242 5355 2.673610 GCCGTAATTCTGCCAAATTGCA 60.674 45.455 8.81 0.00 39.37 4.08
2243 5356 3.784338 CCGTAATTCTGCCAAATTGCAT 58.216 40.909 8.81 0.00 41.16 3.96
2244 5357 4.736168 GCCGTAATTCTGCCAAATTGCATA 60.736 41.667 8.81 0.00 41.16 3.14
2245 5358 5.531634 CCGTAATTCTGCCAAATTGCATAT 58.468 37.500 8.81 0.00 41.16 1.78
2246 5359 5.630680 CCGTAATTCTGCCAAATTGCATATC 59.369 40.000 8.81 0.00 41.16 1.63
2247 5360 6.207928 CGTAATTCTGCCAAATTGCATATCA 58.792 36.000 8.81 0.00 41.16 2.15
2248 5361 6.696583 CGTAATTCTGCCAAATTGCATATCAA 59.303 34.615 8.81 0.00 41.16 2.57
2249 5362 7.222417 CGTAATTCTGCCAAATTGCATATCAAA 59.778 33.333 8.81 0.00 41.16 2.69
2250 5363 7.925043 AATTCTGCCAAATTGCATATCAAAA 57.075 28.000 0.00 0.00 41.16 2.44
2251 5364 7.925043 ATTCTGCCAAATTGCATATCAAAAA 57.075 28.000 0.00 0.00 41.16 1.94
2252 5365 6.724694 TCTGCCAAATTGCATATCAAAAAC 57.275 33.333 0.00 0.00 41.16 2.43
2253 5366 6.228995 TCTGCCAAATTGCATATCAAAAACA 58.771 32.000 0.00 0.00 41.16 2.83
2254 5367 6.369340 TCTGCCAAATTGCATATCAAAAACAG 59.631 34.615 0.00 0.00 41.16 3.16
2255 5368 5.411977 TGCCAAATTGCATATCAAAAACAGG 59.588 36.000 0.00 0.00 38.34 4.00
2256 5369 5.642919 GCCAAATTGCATATCAAAAACAGGA 59.357 36.000 0.00 0.00 38.34 3.86
2257 5370 6.402442 GCCAAATTGCATATCAAAAACAGGAC 60.402 38.462 0.00 0.00 38.34 3.85
2258 5371 6.183360 CCAAATTGCATATCAAAAACAGGACG 60.183 38.462 0.00 0.00 38.34 4.79
2259 5372 5.643379 ATTGCATATCAAAAACAGGACGT 57.357 34.783 0.00 0.00 38.34 4.34
2260 5373 4.418013 TGCATATCAAAAACAGGACGTG 57.582 40.909 0.00 0.00 0.00 4.49
2261 5374 4.068599 TGCATATCAAAAACAGGACGTGA 58.931 39.130 0.00 0.00 0.00 4.35
2262 5375 4.154015 TGCATATCAAAAACAGGACGTGAG 59.846 41.667 0.00 0.00 0.00 3.51
2263 5376 8.916757 ATTGCATATCAAAAACAGGACGTGAGT 61.917 37.037 0.00 0.00 42.87 3.41
2280 5393 7.507733 ACGTGAGTACTAGAGGGTATTATTG 57.492 40.000 0.00 0.00 46.88 1.90
2281 5394 7.059156 ACGTGAGTACTAGAGGGTATTATTGT 58.941 38.462 0.00 0.00 46.88 2.71
2282 5395 7.559170 ACGTGAGTACTAGAGGGTATTATTGTT 59.441 37.037 0.00 0.00 46.88 2.83
2283 5396 8.411683 CGTGAGTACTAGAGGGTATTATTGTTT 58.588 37.037 0.00 0.00 0.00 2.83
2284 5397 9.530633 GTGAGTACTAGAGGGTATTATTGTTTG 57.469 37.037 0.00 0.00 0.00 2.93
2285 5398 9.263446 TGAGTACTAGAGGGTATTATTGTTTGT 57.737 33.333 0.00 0.00 0.00 2.83
2286 5399 9.530633 GAGTACTAGAGGGTATTATTGTTTGTG 57.469 37.037 0.00 0.00 0.00 3.33
2287 5400 9.043548 AGTACTAGAGGGTATTATTGTTTGTGT 57.956 33.333 0.00 0.00 0.00 3.72
2288 5401 9.095065 GTACTAGAGGGTATTATTGTTTGTGTG 57.905 37.037 0.00 0.00 0.00 3.82
2289 5402 7.913789 ACTAGAGGGTATTATTGTTTGTGTGA 58.086 34.615 0.00 0.00 0.00 3.58
2290 5403 8.041323 ACTAGAGGGTATTATTGTTTGTGTGAG 58.959 37.037 0.00 0.00 0.00 3.51
2291 5404 7.016153 AGAGGGTATTATTGTTTGTGTGAGA 57.984 36.000 0.00 0.00 0.00 3.27
2292 5405 7.458397 AGAGGGTATTATTGTTTGTGTGAGAA 58.542 34.615 0.00 0.00 0.00 2.87
2293 5406 7.607991 AGAGGGTATTATTGTTTGTGTGAGAAG 59.392 37.037 0.00 0.00 0.00 2.85
2294 5407 6.151144 AGGGTATTATTGTTTGTGTGAGAAGC 59.849 38.462 0.00 0.00 0.00 3.86
2295 5408 6.072175 GGGTATTATTGTTTGTGTGAGAAGCA 60.072 38.462 0.00 0.00 0.00 3.91
2296 5409 7.362920 GGGTATTATTGTTTGTGTGAGAAGCAT 60.363 37.037 0.00 0.00 0.00 3.79
2297 5410 8.028938 GGTATTATTGTTTGTGTGAGAAGCATT 58.971 33.333 0.00 0.00 0.00 3.56
2298 5411 9.410556 GTATTATTGTTTGTGTGAGAAGCATTT 57.589 29.630 0.00 0.00 0.00 2.32
2299 5412 8.891671 ATTATTGTTTGTGTGAGAAGCATTTT 57.108 26.923 0.00 0.00 0.00 1.82
2300 5413 6.592798 ATTGTTTGTGTGAGAAGCATTTTG 57.407 33.333 0.00 0.00 0.00 2.44
2301 5414 5.070770 TGTTTGTGTGAGAAGCATTTTGT 57.929 34.783 0.00 0.00 0.00 2.83
2302 5415 5.477510 TGTTTGTGTGAGAAGCATTTTGTT 58.522 33.333 0.00 0.00 0.00 2.83
2303 5416 6.625362 TGTTTGTGTGAGAAGCATTTTGTTA 58.375 32.000 0.00 0.00 0.00 2.41
2304 5417 6.751425 TGTTTGTGTGAGAAGCATTTTGTTAG 59.249 34.615 0.00 0.00 0.00 2.34
2305 5418 6.691754 TTGTGTGAGAAGCATTTTGTTAGA 57.308 33.333 0.00 0.00 0.00 2.10
2306 5419 6.691754 TGTGTGAGAAGCATTTTGTTAGAA 57.308 33.333 0.00 0.00 0.00 2.10
2307 5420 7.275888 TGTGTGAGAAGCATTTTGTTAGAAT 57.724 32.000 0.00 0.00 0.00 2.40
2308 5421 7.715657 TGTGTGAGAAGCATTTTGTTAGAATT 58.284 30.769 0.00 0.00 0.00 2.17
2309 5422 8.845227 TGTGTGAGAAGCATTTTGTTAGAATTA 58.155 29.630 0.00 0.00 0.00 1.40
2310 5423 9.677567 GTGTGAGAAGCATTTTGTTAGAATTAA 57.322 29.630 0.00 0.00 0.00 1.40
2311 5424 9.677567 TGTGAGAAGCATTTTGTTAGAATTAAC 57.322 29.630 0.00 0.00 39.69 2.01
2312 5425 9.677567 GTGAGAAGCATTTTGTTAGAATTAACA 57.322 29.630 0.00 0.00 45.54 2.41
2322 5435 5.771469 TGTTAGAATTAACAACCGAGTCGA 58.229 37.500 15.64 0.00 44.56 4.20
2323 5436 5.860182 TGTTAGAATTAACAACCGAGTCGAG 59.140 40.000 15.64 6.79 44.56 4.04
2324 5437 4.778534 AGAATTAACAACCGAGTCGAGA 57.221 40.909 15.64 0.00 0.00 4.04
2325 5438 4.483311 AGAATTAACAACCGAGTCGAGAC 58.517 43.478 15.64 0.00 0.00 3.36
2326 5439 2.320805 TTAACAACCGAGTCGAGACG 57.679 50.000 15.64 0.00 36.20 4.18
2327 5440 1.229428 TAACAACCGAGTCGAGACGT 58.771 50.000 15.64 0.00 36.20 4.34
2328 5441 1.229428 AACAACCGAGTCGAGACGTA 58.771 50.000 15.64 0.00 36.20 3.57
2329 5442 1.229428 ACAACCGAGTCGAGACGTAA 58.771 50.000 15.64 0.00 36.20 3.18
2330 5443 1.069636 ACAACCGAGTCGAGACGTAAC 60.070 52.381 15.64 0.00 36.20 2.50
2331 5444 1.196354 CAACCGAGTCGAGACGTAACT 59.804 52.381 15.64 0.00 36.20 2.24
2332 5445 1.517242 ACCGAGTCGAGACGTAACTT 58.483 50.000 15.64 0.00 36.20 2.66
2333 5446 1.462670 ACCGAGTCGAGACGTAACTTC 59.537 52.381 15.64 0.00 36.20 3.01
2334 5447 1.462283 CCGAGTCGAGACGTAACTTCA 59.538 52.381 15.64 0.00 36.20 3.02
2335 5448 2.096069 CCGAGTCGAGACGTAACTTCAA 60.096 50.000 15.64 0.00 36.20 2.69
2336 5449 2.901264 CGAGTCGAGACGTAACTTCAAC 59.099 50.000 6.73 0.00 36.20 3.18
2337 5450 3.605461 CGAGTCGAGACGTAACTTCAACA 60.605 47.826 6.73 0.00 36.20 3.33
2338 5451 4.285292 GAGTCGAGACGTAACTTCAACAA 58.715 43.478 0.00 0.00 36.20 2.83
2339 5452 4.868067 AGTCGAGACGTAACTTCAACAAT 58.132 39.130 0.00 0.00 36.20 2.71
2340 5453 4.680110 AGTCGAGACGTAACTTCAACAATG 59.320 41.667 0.00 0.00 36.20 2.82
2341 5454 3.985279 TCGAGACGTAACTTCAACAATGG 59.015 43.478 0.00 0.00 0.00 3.16
2342 5455 3.122948 CGAGACGTAACTTCAACAATGGG 59.877 47.826 0.00 0.00 0.00 4.00
2343 5456 2.812011 AGACGTAACTTCAACAATGGGC 59.188 45.455 0.00 0.00 0.00 5.36
2344 5457 2.550606 GACGTAACTTCAACAATGGGCA 59.449 45.455 0.00 0.00 0.00 5.36
2345 5458 2.552315 ACGTAACTTCAACAATGGGCAG 59.448 45.455 0.00 0.00 0.00 4.85
2346 5459 2.668279 CGTAACTTCAACAATGGGCAGC 60.668 50.000 0.00 0.00 0.00 5.25
2347 5460 0.314935 AACTTCAACAATGGGCAGCG 59.685 50.000 0.00 0.00 0.00 5.18
2348 5461 1.444895 CTTCAACAATGGGCAGCGC 60.445 57.895 0.00 0.00 0.00 5.92
2349 5462 1.870055 CTTCAACAATGGGCAGCGCT 61.870 55.000 2.64 2.64 0.00 5.92
2350 5463 2.126228 CAACAATGGGCAGCGCTG 60.126 61.111 32.83 32.83 0.00 5.18
2351 5464 3.376078 AACAATGGGCAGCGCTGG 61.376 61.111 36.47 21.74 0.00 4.85
2382 5495 4.959596 GCGGAGGCTCAGATCGGC 62.960 72.222 19.08 6.50 35.12 5.54
2387 5500 3.474570 GGCTCAGATCGGCCACCT 61.475 66.667 18.00 0.00 46.84 4.00
2388 5501 2.107953 GCTCAGATCGGCCACCTC 59.892 66.667 2.24 0.00 0.00 3.85
2389 5502 2.818132 CTCAGATCGGCCACCTCC 59.182 66.667 2.24 0.00 0.00 4.30
2390 5503 2.764128 TCAGATCGGCCACCTCCC 60.764 66.667 2.24 0.00 0.00 4.30
2391 5504 4.227134 CAGATCGGCCACCTCCCG 62.227 72.222 2.24 0.00 46.88 5.14
2402 5515 3.790437 CCTCCCGCACTGGCTGAT 61.790 66.667 0.00 0.00 38.10 2.90
2403 5516 2.513204 CTCCCGCACTGGCTGATG 60.513 66.667 0.00 0.00 38.10 3.07
2404 5517 4.783621 TCCCGCACTGGCTGATGC 62.784 66.667 0.00 3.86 38.10 3.91
2419 5532 3.398310 TGCGCCCTAGCATCACCA 61.398 61.111 4.18 0.00 42.92 4.17
2420 5533 2.897350 GCGCCCTAGCATCACCAC 60.897 66.667 0.00 0.00 39.83 4.16
2421 5534 2.203070 CGCCCTAGCATCACCACC 60.203 66.667 0.00 0.00 39.83 4.61
2422 5535 2.735772 CGCCCTAGCATCACCACCT 61.736 63.158 0.00 0.00 39.83 4.00
2423 5536 1.153086 GCCCTAGCATCACCACCTG 60.153 63.158 0.00 0.00 39.53 4.00
2424 5537 1.626356 GCCCTAGCATCACCACCTGA 61.626 60.000 0.00 0.00 39.53 3.86
2425 5538 1.135094 CCCTAGCATCACCACCTGAT 58.865 55.000 0.00 0.00 40.59 2.90
2426 5539 1.492176 CCCTAGCATCACCACCTGATT 59.508 52.381 0.00 0.00 37.53 2.57
2427 5540 2.705658 CCCTAGCATCACCACCTGATTA 59.294 50.000 0.00 0.00 37.53 1.75
2428 5541 3.244353 CCCTAGCATCACCACCTGATTAG 60.244 52.174 0.00 0.00 37.53 1.73
2429 5542 3.643320 CCTAGCATCACCACCTGATTAGA 59.357 47.826 0.00 0.00 37.53 2.10
2430 5543 4.285517 CCTAGCATCACCACCTGATTAGAT 59.714 45.833 0.00 0.00 37.53 1.98
2431 5544 4.348863 AGCATCACCACCTGATTAGATC 57.651 45.455 0.00 0.00 37.53 2.75
2432 5545 3.062763 GCATCACCACCTGATTAGATCG 58.937 50.000 0.00 0.00 37.53 3.69
2433 5546 3.493350 GCATCACCACCTGATTAGATCGT 60.493 47.826 0.00 0.00 37.53 3.73
2434 5547 4.302455 CATCACCACCTGATTAGATCGTC 58.698 47.826 0.00 0.00 37.53 4.20
2435 5548 3.632333 TCACCACCTGATTAGATCGTCT 58.368 45.455 0.00 0.00 0.00 4.18
2436 5549 4.023980 TCACCACCTGATTAGATCGTCTT 58.976 43.478 0.00 0.00 0.00 3.01
2437 5550 4.098044 TCACCACCTGATTAGATCGTCTTC 59.902 45.833 0.00 0.00 0.00 2.87
2438 5551 3.385111 ACCACCTGATTAGATCGTCTTCC 59.615 47.826 0.00 0.00 0.00 3.46
2439 5552 3.243907 CCACCTGATTAGATCGTCTTCCC 60.244 52.174 0.00 0.00 0.00 3.97
2440 5553 3.639094 CACCTGATTAGATCGTCTTCCCT 59.361 47.826 0.00 0.00 0.00 4.20
2441 5554 3.639094 ACCTGATTAGATCGTCTTCCCTG 59.361 47.826 0.00 0.00 0.00 4.45
2442 5555 3.639094 CCTGATTAGATCGTCTTCCCTGT 59.361 47.826 0.00 0.00 0.00 4.00
2443 5556 4.261825 CCTGATTAGATCGTCTTCCCTGTC 60.262 50.000 0.00 0.00 0.00 3.51
2444 5557 4.537751 TGATTAGATCGTCTTCCCTGTCT 58.462 43.478 0.00 0.00 0.00 3.41
2445 5558 4.580995 TGATTAGATCGTCTTCCCTGTCTC 59.419 45.833 0.00 0.00 0.00 3.36
2446 5559 1.770294 AGATCGTCTTCCCTGTCTCC 58.230 55.000 0.00 0.00 0.00 3.71
2447 5560 0.747852 GATCGTCTTCCCTGTCTCCC 59.252 60.000 0.00 0.00 0.00 4.30
2742 5855 2.196776 GGCTGCCACATGCCCTAT 59.803 61.111 15.17 0.00 43.11 2.57
2743 5856 2.198287 GGCTGCCACATGCCCTATG 61.198 63.158 15.17 0.00 43.11 2.23
2744 5857 2.853290 GCTGCCACATGCCCTATGC 61.853 63.158 0.00 0.00 40.59 3.14
2745 5858 2.516695 TGCCACATGCCCTATGCG 60.517 61.111 0.00 0.00 45.60 4.73
2746 5859 3.969802 GCCACATGCCCTATGCGC 61.970 66.667 0.00 0.00 45.60 6.09
2747 5860 2.516695 CCACATGCCCTATGCGCA 60.517 61.111 14.96 14.96 45.60 6.09
2748 5861 2.717485 CACATGCCCTATGCGCAC 59.283 61.111 14.90 0.00 45.60 5.34
2749 5862 2.896854 ACATGCCCTATGCGCACG 60.897 61.111 14.90 6.94 45.60 5.34
2750 5863 4.318021 CATGCCCTATGCGCACGC 62.318 66.667 14.90 13.17 45.60 5.34
2754 5867 4.838152 CCCTATGCGCACGCCAGT 62.838 66.667 14.90 0.00 41.09 4.00
2755 5868 3.264897 CCTATGCGCACGCCAGTC 61.265 66.667 14.90 0.00 41.09 3.51
2756 5869 3.620428 CTATGCGCACGCCAGTCG 61.620 66.667 14.90 0.00 45.38 4.18
2766 5879 3.512516 GCCAGTCGCCTTGCCATC 61.513 66.667 0.00 0.00 0.00 3.51
2767 5880 2.825836 CCAGTCGCCTTGCCATCC 60.826 66.667 0.00 0.00 0.00 3.51
2768 5881 2.825836 CAGTCGCCTTGCCATCCC 60.826 66.667 0.00 0.00 0.00 3.85
2769 5882 4.473520 AGTCGCCTTGCCATCCCG 62.474 66.667 0.00 0.00 0.00 5.14
2770 5883 4.778143 GTCGCCTTGCCATCCCGT 62.778 66.667 0.00 0.00 0.00 5.28
2771 5884 4.467084 TCGCCTTGCCATCCCGTC 62.467 66.667 0.00 0.00 0.00 4.79
2772 5885 4.776322 CGCCTTGCCATCCCGTCA 62.776 66.667 0.00 0.00 0.00 4.35
2773 5886 3.134127 GCCTTGCCATCCCGTCAC 61.134 66.667 0.00 0.00 0.00 3.67
2774 5887 2.819595 CCTTGCCATCCCGTCACG 60.820 66.667 0.00 0.00 0.00 4.35
2775 5888 2.047274 CTTGCCATCCCGTCACGT 60.047 61.111 0.00 0.00 0.00 4.49
2776 5889 1.671054 CTTGCCATCCCGTCACGTT 60.671 57.895 0.00 0.00 0.00 3.99
2777 5890 1.635663 CTTGCCATCCCGTCACGTTC 61.636 60.000 0.00 0.00 0.00 3.95
2778 5891 2.818274 GCCATCCCGTCACGTTCC 60.818 66.667 0.00 0.00 0.00 3.62
2779 5892 2.660206 CCATCCCGTCACGTTCCA 59.340 61.111 0.00 0.00 0.00 3.53
2780 5893 1.447838 CCATCCCGTCACGTTCCAG 60.448 63.158 0.00 0.00 0.00 3.86
2781 5894 1.292223 CATCCCGTCACGTTCCAGT 59.708 57.895 0.00 0.00 0.00 4.00
2782 5895 0.320421 CATCCCGTCACGTTCCAGTT 60.320 55.000 0.00 0.00 0.00 3.16
2783 5896 0.320421 ATCCCGTCACGTTCCAGTTG 60.320 55.000 0.00 0.00 0.00 3.16
2784 5897 2.604174 CCCGTCACGTTCCAGTTGC 61.604 63.158 0.00 0.00 0.00 4.17
2785 5898 1.885388 CCGTCACGTTCCAGTTGCA 60.885 57.895 0.00 0.00 0.00 4.08
2786 5899 1.564622 CGTCACGTTCCAGTTGCAG 59.435 57.895 0.00 0.00 0.00 4.41
2787 5900 1.279840 GTCACGTTCCAGTTGCAGC 59.720 57.895 0.00 0.00 0.00 5.25
2788 5901 1.153269 TCACGTTCCAGTTGCAGCA 60.153 52.632 2.55 0.00 0.00 4.41
2789 5902 1.009675 CACGTTCCAGTTGCAGCAC 60.010 57.895 2.55 0.00 0.00 4.40
2790 5903 2.186826 ACGTTCCAGTTGCAGCACC 61.187 57.895 2.55 0.00 0.00 5.01
2791 5904 2.639286 GTTCCAGTTGCAGCACCG 59.361 61.111 2.55 0.00 0.00 4.94
2792 5905 2.186826 GTTCCAGTTGCAGCACCGT 61.187 57.895 2.55 0.00 0.00 4.83
2793 5906 1.891919 TTCCAGTTGCAGCACCGTC 60.892 57.895 2.55 0.00 0.00 4.79
2794 5907 2.591429 CCAGTTGCAGCACCGTCA 60.591 61.111 2.55 0.00 0.00 4.35
2795 5908 2.186160 CCAGTTGCAGCACCGTCAA 61.186 57.895 2.55 0.00 0.00 3.18
2796 5909 1.723608 CCAGTTGCAGCACCGTCAAA 61.724 55.000 2.55 0.00 0.00 2.69
2797 5910 0.317269 CAGTTGCAGCACCGTCAAAG 60.317 55.000 2.55 0.00 0.00 2.77
2798 5911 1.658409 GTTGCAGCACCGTCAAAGC 60.658 57.895 0.00 0.00 0.00 3.51
2799 5912 2.844451 TTGCAGCACCGTCAAAGCC 61.844 57.895 0.00 0.00 0.00 4.35
2800 5913 2.980233 GCAGCACCGTCAAAGCCT 60.980 61.111 0.00 0.00 0.00 4.58
2801 5914 2.970974 GCAGCACCGTCAAAGCCTC 61.971 63.158 0.00 0.00 0.00 4.70
2802 5915 2.357517 AGCACCGTCAAAGCCTCG 60.358 61.111 0.00 0.00 0.00 4.63
2803 5916 4.090057 GCACCGTCAAAGCCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
2804 5917 3.423154 CACCGTCAAAGCCTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
2805 5918 3.936203 ACCGTCAAAGCCTCGCCA 61.936 61.111 0.00 0.00 0.00 5.69
2806 5919 3.423154 CCGTCAAAGCCTCGCCAC 61.423 66.667 0.00 0.00 0.00 5.01
2807 5920 2.664851 CGTCAAAGCCTCGCCACA 60.665 61.111 0.00 0.00 0.00 4.17
2808 5921 2.034879 CGTCAAAGCCTCGCCACAT 61.035 57.895 0.00 0.00 0.00 3.21
2809 5922 1.577328 CGTCAAAGCCTCGCCACATT 61.577 55.000 0.00 0.00 0.00 2.71
2810 5923 0.109597 GTCAAAGCCTCGCCACATTG 60.110 55.000 0.00 0.00 0.00 2.82
2811 5924 1.444895 CAAAGCCTCGCCACATTGC 60.445 57.895 0.00 0.00 0.00 3.56
2812 5925 1.604593 AAAGCCTCGCCACATTGCT 60.605 52.632 0.00 0.00 0.00 3.91
2813 5926 0.322456 AAAGCCTCGCCACATTGCTA 60.322 50.000 0.00 0.00 0.00 3.49
2814 5927 0.745845 AAGCCTCGCCACATTGCTAG 60.746 55.000 0.00 0.00 0.00 3.42
2815 5928 2.828128 GCCTCGCCACATTGCTAGC 61.828 63.158 8.10 8.10 0.00 3.42
2816 5929 1.153289 CCTCGCCACATTGCTAGCT 60.153 57.895 17.23 0.00 0.00 3.32
2817 5930 0.745845 CCTCGCCACATTGCTAGCTT 60.746 55.000 17.23 0.00 0.00 3.74
2818 5931 0.376152 CTCGCCACATTGCTAGCTTG 59.624 55.000 17.23 15.51 0.00 4.01
2819 5932 0.321564 TCGCCACATTGCTAGCTTGT 60.322 50.000 17.23 16.16 0.00 3.16
2820 5933 0.179181 CGCCACATTGCTAGCTTGTG 60.179 55.000 29.32 29.32 40.29 3.33
2821 5934 0.457337 GCCACATTGCTAGCTTGTGC 60.457 55.000 30.18 24.30 39.48 4.57
2822 5935 0.171903 CCACATTGCTAGCTTGTGCC 59.828 55.000 30.18 1.04 39.48 5.01
2823 5936 0.171903 CACATTGCTAGCTTGTGCCC 59.828 55.000 27.04 0.00 40.80 5.36
2824 5937 0.038744 ACATTGCTAGCTTGTGCCCT 59.961 50.000 17.23 0.00 40.80 5.19
2825 5938 0.737219 CATTGCTAGCTTGTGCCCTC 59.263 55.000 17.23 0.00 40.80 4.30
2826 5939 0.745845 ATTGCTAGCTTGTGCCCTCG 60.746 55.000 17.23 0.00 40.80 4.63
2827 5940 3.198489 GCTAGCTTGTGCCCTCGC 61.198 66.667 7.70 0.00 40.80 5.03
2828 5941 2.512515 CTAGCTTGTGCCCTCGCC 60.513 66.667 0.00 0.00 40.80 5.54
2829 5942 4.451150 TAGCTTGTGCCCTCGCCG 62.451 66.667 0.00 0.00 40.80 6.46
2832 5945 2.978010 CTTGTGCCCTCGCCGTTT 60.978 61.111 0.00 0.00 0.00 3.60
2833 5946 3.254014 CTTGTGCCCTCGCCGTTTG 62.254 63.158 0.00 0.00 0.00 2.93
2838 5951 3.047877 CCCTCGCCGTTTGGTCAC 61.048 66.667 0.00 0.00 37.67 3.67
2839 5952 2.030562 CCTCGCCGTTTGGTCACT 59.969 61.111 0.00 0.00 37.67 3.41
2840 5953 2.317609 CCTCGCCGTTTGGTCACTG 61.318 63.158 0.00 0.00 37.67 3.66
2841 5954 1.300620 CTCGCCGTTTGGTCACTGA 60.301 57.895 0.00 0.00 37.67 3.41
2842 5955 1.557443 CTCGCCGTTTGGTCACTGAC 61.557 60.000 0.00 0.00 37.67 3.51
2843 5956 2.935955 GCCGTTTGGTCACTGACG 59.064 61.111 3.04 0.00 37.67 4.35
2845 5958 4.431035 CGTTTGGTCACTGACGGT 57.569 55.556 3.04 0.00 32.65 4.83
2846 5959 2.685364 CGTTTGGTCACTGACGGTT 58.315 52.632 3.04 0.00 32.65 4.44
2847 5960 0.303493 CGTTTGGTCACTGACGGTTG 59.697 55.000 3.04 0.00 32.65 3.77
2848 5961 0.028902 GTTTGGTCACTGACGGTTGC 59.971 55.000 3.04 0.00 32.65 4.17
2849 5962 0.393132 TTTGGTCACTGACGGTTGCA 60.393 50.000 3.04 0.00 32.65 4.08
2850 5963 0.393132 TTGGTCACTGACGGTTGCAA 60.393 50.000 0.00 0.00 32.65 4.08
2851 5964 1.092921 TGGTCACTGACGGTTGCAAC 61.093 55.000 21.59 21.59 32.65 4.17
2852 5965 1.092921 GGTCACTGACGGTTGCAACA 61.093 55.000 29.55 9.52 32.65 3.33
2853 5966 0.027586 GTCACTGACGGTTGCAACAC 59.972 55.000 29.55 19.66 0.00 3.32
2854 5967 0.391793 TCACTGACGGTTGCAACACA 60.392 50.000 29.55 22.62 0.00 3.72
2855 5968 0.449786 CACTGACGGTTGCAACACAA 59.550 50.000 29.55 11.84 35.33 3.33
2865 5978 2.783828 TGCAACACAACCATTAACGG 57.216 45.000 0.00 0.00 0.00 4.44
2866 5979 2.025155 TGCAACACAACCATTAACGGT 58.975 42.857 0.00 0.00 42.71 4.83
2873 5986 3.339547 ACCATTAACGGTTGCAGCT 57.660 47.368 3.07 0.00 34.91 4.24
2874 5987 1.616159 ACCATTAACGGTTGCAGCTT 58.384 45.000 3.07 0.00 34.91 3.74
2875 5988 1.539827 ACCATTAACGGTTGCAGCTTC 59.460 47.619 3.07 0.00 34.91 3.86
2876 5989 1.812571 CCATTAACGGTTGCAGCTTCT 59.187 47.619 3.07 0.00 0.00 2.85
2877 5990 2.228822 CCATTAACGGTTGCAGCTTCTT 59.771 45.455 3.07 0.00 0.00 2.52
2878 5991 3.492313 CATTAACGGTTGCAGCTTCTTC 58.508 45.455 3.07 0.00 0.00 2.87
2879 5992 1.519408 TAACGGTTGCAGCTTCTTCC 58.481 50.000 3.07 0.00 0.00 3.46
2880 5993 0.465460 AACGGTTGCAGCTTCTTCCA 60.465 50.000 0.00 0.00 0.00 3.53
2881 5994 0.250901 ACGGTTGCAGCTTCTTCCAT 60.251 50.000 0.00 0.00 0.00 3.41
2882 5995 0.449388 CGGTTGCAGCTTCTTCCATC 59.551 55.000 0.00 0.00 0.00 3.51
2883 5996 0.449388 GGTTGCAGCTTCTTCCATCG 59.551 55.000 0.00 0.00 0.00 3.84
2884 5997 0.449388 GTTGCAGCTTCTTCCATCGG 59.551 55.000 0.00 0.00 0.00 4.18
2885 5998 0.036732 TTGCAGCTTCTTCCATCGGT 59.963 50.000 0.00 0.00 0.00 4.69
2886 5999 0.674581 TGCAGCTTCTTCCATCGGTG 60.675 55.000 0.00 0.00 0.00 4.94
2887 6000 0.674895 GCAGCTTCTTCCATCGGTGT 60.675 55.000 0.00 0.00 0.00 4.16
2888 6001 1.813513 CAGCTTCTTCCATCGGTGTT 58.186 50.000 0.00 0.00 0.00 3.32
2889 6002 1.466167 CAGCTTCTTCCATCGGTGTTG 59.534 52.381 0.00 0.00 0.00 3.33
2890 6003 0.169009 GCTTCTTCCATCGGTGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
2891 6004 1.522668 CTTCTTCCATCGGTGTTGCA 58.477 50.000 0.00 0.00 0.00 4.08
2892 6005 1.466167 CTTCTTCCATCGGTGTTGCAG 59.534 52.381 0.00 0.00 0.00 4.41
2893 6006 0.955428 TCTTCCATCGGTGTTGCAGC 60.955 55.000 0.00 0.00 0.00 5.25
2894 6007 0.957395 CTTCCATCGGTGTTGCAGCT 60.957 55.000 1.17 0.00 0.00 4.24
2895 6008 0.537143 TTCCATCGGTGTTGCAGCTT 60.537 50.000 1.17 0.00 0.00 3.74
2896 6009 0.537143 TCCATCGGTGTTGCAGCTTT 60.537 50.000 1.17 0.00 0.00 3.51
2897 6010 0.314935 CCATCGGTGTTGCAGCTTTT 59.685 50.000 1.17 0.00 0.00 2.27
2898 6011 1.411394 CATCGGTGTTGCAGCTTTTG 58.589 50.000 1.17 0.00 0.00 2.44
2899 6012 1.032014 ATCGGTGTTGCAGCTTTTGT 58.968 45.000 1.17 0.00 0.00 2.83
2900 6013 0.100325 TCGGTGTTGCAGCTTTTGTG 59.900 50.000 1.17 0.00 0.00 3.33
2901 6014 1.481819 CGGTGTTGCAGCTTTTGTGC 61.482 55.000 1.17 0.00 41.59 4.57
2902 6015 1.153597 GGTGTTGCAGCTTTTGTGCC 61.154 55.000 1.17 0.00 40.43 5.01
2903 6016 1.226916 TGTTGCAGCTTTTGTGCCG 60.227 52.632 1.17 0.00 40.43 5.69
2904 6017 1.950630 GTTGCAGCTTTTGTGCCGG 60.951 57.895 0.00 0.00 40.43 6.13
2905 6018 3.788616 TTGCAGCTTTTGTGCCGGC 62.789 57.895 22.73 22.73 40.43 6.13
2907 6020 4.705519 CAGCTTTTGTGCCGGCCG 62.706 66.667 26.77 21.04 0.00 6.13
2910 6023 3.601685 CTTTTGTGCCGGCCGGTT 61.602 61.111 42.53 0.00 37.65 4.44
2911 6024 3.551887 CTTTTGTGCCGGCCGGTTC 62.552 63.158 42.53 33.23 37.65 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.897271 TATCTCAAAGCCCAGCCAAA 57.103 45.000 0.00 0.00 0.00 3.28
42 43 4.582240 GGGAAGAAATATCTCAAAGCCCAG 59.418 45.833 0.00 0.00 33.77 4.45
228 232 7.861629 TCCACCATGAACTCTAAAATATGTCT 58.138 34.615 0.00 0.00 0.00 3.41
229 233 8.506168 TTCCACCATGAACTCTAAAATATGTC 57.494 34.615 0.00 0.00 0.00 3.06
232 236 9.566432 GAGATTCCACCATGAACTCTAAAATAT 57.434 33.333 0.00 0.00 0.00 1.28
233 237 8.772250 AGAGATTCCACCATGAACTCTAAAATA 58.228 33.333 0.00 0.00 34.21 1.40
239 243 6.627087 TTTAGAGATTCCACCATGAACTCT 57.373 37.500 0.00 0.00 36.99 3.24
240 244 7.607991 TCTTTTTAGAGATTCCACCATGAACTC 59.392 37.037 0.00 0.00 0.00 3.01
244 257 7.020827 AGTCTTTTTAGAGATTCCACCATGA 57.979 36.000 0.00 0.00 0.00 3.07
261 274 9.590451 TCATCCGTTCGTAAATATAAGTCTTTT 57.410 29.630 0.00 0.00 0.00 2.27
265 278 9.327529 CTACTCATCCGTTCGTAAATATAAGTC 57.672 37.037 0.00 0.00 0.00 3.01
277 290 4.574013 AGGTTAGTACTACTCATCCGTTCG 59.426 45.833 0.91 0.00 0.00 3.95
278 291 6.448207 AAGGTTAGTACTACTCATCCGTTC 57.552 41.667 0.91 0.00 0.00 3.95
282 295 6.448207 AACGAAGGTTAGTACTACTCATCC 57.552 41.667 0.91 1.26 33.72 3.51
285 298 7.945134 AGAAAAACGAAGGTTAGTACTACTCA 58.055 34.615 0.91 0.00 34.62 3.41
286 299 8.296000 AGAGAAAAACGAAGGTTAGTACTACTC 58.704 37.037 0.91 1.56 34.62 2.59
289 302 8.401490 AGAGAGAAAAACGAAGGTTAGTACTA 57.599 34.615 0.00 0.00 34.62 1.82
295 308 8.342634 CAATCAAAGAGAGAAAAACGAAGGTTA 58.657 33.333 0.00 0.00 34.62 2.85
325 338 1.965414 TGTTGGCAGGAGGAGGATTA 58.035 50.000 0.00 0.00 0.00 1.75
412 456 9.716531 TGAAGCATCTGGATATAAGACATTTAG 57.283 33.333 0.00 0.00 0.00 1.85
571 2020 0.647410 CGCGTATTCAGCTCAACCAG 59.353 55.000 0.00 0.00 0.00 4.00
655 3717 0.863144 CCGGTACACAACAAGGAACG 59.137 55.000 0.00 0.00 31.24 3.95
700 3762 5.134339 TGTGATAAATATGCTCCCTCCCTTT 59.866 40.000 0.00 0.00 0.00 3.11
722 3784 2.499289 TGCAAACCAACCTCATGTTTGT 59.501 40.909 13.78 0.00 46.51 2.83
760 3823 4.988540 GGGTTAACCAAAAGCTAGCAAAAG 59.011 41.667 25.71 3.86 39.85 2.27
766 3829 5.535030 ACTTGAAGGGTTAACCAAAAGCTAG 59.465 40.000 25.71 16.16 43.89 3.42
815 3878 8.803397 ATAGATTTTTGTAGACTTTACCCACC 57.197 34.615 0.00 0.00 0.00 4.61
924 3988 2.544685 CCACGAGTAAGATGAAGCCAG 58.455 52.381 0.00 0.00 0.00 4.85
968 4032 3.140144 TGAGATTCCCAAGGTTTCCTGTT 59.860 43.478 0.00 0.00 32.13 3.16
1140 4204 2.110967 CATGCGCTCCTTGGTCAGG 61.111 63.158 9.73 0.00 45.64 3.86
1318 4393 3.732721 GTGTATAAATAGGTGACGCCGTC 59.267 47.826 10.96 10.96 43.70 4.79
1413 4488 2.828549 GTGCTTGGGGGTATGGCG 60.829 66.667 0.00 0.00 0.00 5.69
1686 4761 2.681778 ACCGTCCTCTCCTGCAGG 60.682 66.667 27.87 27.87 0.00 4.85
1708 4783 2.035442 GCACCTCTTCCTTGCCGAC 61.035 63.158 0.00 0.00 0.00 4.79
1727 4802 0.949105 AAATCAGACCACGCACGGAC 60.949 55.000 0.00 0.00 0.00 4.79
1728 4803 0.250124 AAAATCAGACCACGCACGGA 60.250 50.000 0.00 0.00 0.00 4.69
1729 4804 0.165944 GAAAATCAGACCACGCACGG 59.834 55.000 0.00 0.00 0.00 4.94
1730 4805 0.165944 GGAAAATCAGACCACGCACG 59.834 55.000 0.00 0.00 0.00 5.34
1731 4806 1.523758 AGGAAAATCAGACCACGCAC 58.476 50.000 0.00 0.00 0.00 5.34
1732 4807 2.270352 AAGGAAAATCAGACCACGCA 57.730 45.000 0.00 0.00 0.00 5.24
1733 4808 3.308530 CAAAAGGAAAATCAGACCACGC 58.691 45.455 0.00 0.00 0.00 5.34
1734 4809 3.305335 CCCAAAAGGAAAATCAGACCACG 60.305 47.826 0.00 0.00 38.24 4.94
1772 4854 5.051508 CCGAAAAGCAAAATTCAGTCAAGTG 60.052 40.000 0.00 0.00 0.00 3.16
1773 4855 5.043248 CCGAAAAGCAAAATTCAGTCAAGT 58.957 37.500 0.00 0.00 0.00 3.16
1806 4897 0.978146 AAGCAGCGAGTATCCCCAGT 60.978 55.000 0.00 0.00 0.00 4.00
1827 4918 1.639298 GCATGGTCTTGGACGTGAGC 61.639 60.000 0.00 0.00 32.65 4.26
1860 4951 1.676916 CGAGCATTCTTCTTGGGCAGA 60.677 52.381 0.00 0.00 0.00 4.26
1934 5025 2.478134 CTGGAACGAGCAAGTTCTGAAG 59.522 50.000 19.12 12.67 46.99 3.02
2026 5138 5.415701 AGAGCGTTTTGACACCATAATTCAT 59.584 36.000 0.00 0.00 0.00 2.57
2033 5145 8.677148 ATAATATAAGAGCGTTTTGACACCAT 57.323 30.769 0.00 0.00 0.00 3.55
2049 5161 7.720515 CCTACTCCCTCCGTCCTATAATATAAG 59.279 44.444 0.00 0.00 0.00 1.73
2059 5172 1.830486 TATCCTACTCCCTCCGTCCT 58.170 55.000 0.00 0.00 0.00 3.85
2061 5174 3.055530 TCGTATATCCTACTCCCTCCGTC 60.056 52.174 0.00 0.00 0.00 4.79
2067 5180 4.298103 TGGACTCGTATATCCTACTCCC 57.702 50.000 0.00 0.00 35.86 4.30
2093 5206 9.645059 TCTCTCATAATACTCAGAAAAGTTGTG 57.355 33.333 0.00 0.00 0.00 3.33
2122 5235 8.818622 ACCAACTCGTATGGATAGCTATAATA 57.181 34.615 6.13 5.45 40.56 0.98
2123 5236 7.719871 ACCAACTCGTATGGATAGCTATAAT 57.280 36.000 6.13 6.43 40.56 1.28
2125 5238 8.818622 AATACCAACTCGTATGGATAGCTATA 57.181 34.615 6.13 0.00 40.56 1.31
2130 5243 7.393796 ACCTAGAATACCAACTCGTATGGATAG 59.606 40.741 10.14 5.18 40.56 2.08
2132 5245 6.075984 ACCTAGAATACCAACTCGTATGGAT 58.924 40.000 10.14 0.00 40.56 3.41
2139 5252 6.501781 ACGAATTACCTAGAATACCAACTCG 58.498 40.000 0.00 0.00 0.00 4.18
2153 5266 5.531634 TCACGACTAAACAACGAATTACCT 58.468 37.500 0.00 0.00 0.00 3.08
2154 5267 5.827568 TCACGACTAAACAACGAATTACC 57.172 39.130 0.00 0.00 0.00 2.85
2155 5268 9.962759 ATTTATCACGACTAAACAACGAATTAC 57.037 29.630 0.00 0.00 0.00 1.89
2159 5272 9.796062 GTTAATTTATCACGACTAAACAACGAA 57.204 29.630 0.00 0.00 0.00 3.85
2160 5273 8.155294 CGTTAATTTATCACGACTAAACAACGA 58.845 33.333 18.83 0.00 39.36 3.85
2161 5274 8.155294 TCGTTAATTTATCACGACTAAACAACG 58.845 33.333 18.26 18.26 38.00 4.10
2162 5275 9.456797 CTCGTTAATTTATCACGACTAAACAAC 57.543 33.333 0.00 0.00 38.00 3.32
2163 5276 9.409312 TCTCGTTAATTTATCACGACTAAACAA 57.591 29.630 0.00 0.00 38.00 2.83
2164 5277 8.969121 TCTCGTTAATTTATCACGACTAAACA 57.031 30.769 0.00 0.00 38.00 2.83
2165 5278 8.529911 CCTCTCGTTAATTTATCACGACTAAAC 58.470 37.037 0.00 0.00 38.00 2.01
2166 5279 7.703621 CCCTCTCGTTAATTTATCACGACTAAA 59.296 37.037 0.00 0.00 38.00 1.85
2167 5280 7.198390 CCCTCTCGTTAATTTATCACGACTAA 58.802 38.462 0.00 0.00 38.00 2.24
2168 5281 6.732154 CCCTCTCGTTAATTTATCACGACTA 58.268 40.000 0.00 0.00 38.00 2.59
2169 5282 5.589192 CCCTCTCGTTAATTTATCACGACT 58.411 41.667 0.00 0.00 38.00 4.18
2170 5283 4.208666 GCCCTCTCGTTAATTTATCACGAC 59.791 45.833 0.00 0.00 38.00 4.34
2171 5284 4.142116 TGCCCTCTCGTTAATTTATCACGA 60.142 41.667 0.00 3.96 40.53 4.35
2172 5285 4.116961 TGCCCTCTCGTTAATTTATCACG 58.883 43.478 0.00 0.00 35.18 4.35
2173 5286 5.527582 ACATGCCCTCTCGTTAATTTATCAC 59.472 40.000 0.00 0.00 0.00 3.06
2174 5287 5.680619 ACATGCCCTCTCGTTAATTTATCA 58.319 37.500 0.00 0.00 0.00 2.15
2175 5288 6.619801 AACATGCCCTCTCGTTAATTTATC 57.380 37.500 0.00 0.00 0.00 1.75
2176 5289 6.828785 AGAAACATGCCCTCTCGTTAATTTAT 59.171 34.615 0.00 0.00 0.00 1.40
2177 5290 6.177610 AGAAACATGCCCTCTCGTTAATTTA 58.822 36.000 0.00 0.00 0.00 1.40
2178 5291 5.010282 AGAAACATGCCCTCTCGTTAATTT 58.990 37.500 0.00 0.00 0.00 1.82
2179 5292 4.589908 AGAAACATGCCCTCTCGTTAATT 58.410 39.130 0.00 0.00 0.00 1.40
2180 5293 4.222124 AGAAACATGCCCTCTCGTTAAT 57.778 40.909 0.00 0.00 0.00 1.40
2181 5294 3.695830 AGAAACATGCCCTCTCGTTAA 57.304 42.857 0.00 0.00 0.00 2.01
2182 5295 3.260884 AGAAGAAACATGCCCTCTCGTTA 59.739 43.478 0.00 0.00 0.00 3.18
2183 5296 2.039084 AGAAGAAACATGCCCTCTCGTT 59.961 45.455 0.00 0.00 0.00 3.85
2184 5297 1.625818 AGAAGAAACATGCCCTCTCGT 59.374 47.619 0.00 0.00 0.00 4.18
2185 5298 2.005451 CAGAAGAAACATGCCCTCTCG 58.995 52.381 0.00 0.00 0.00 4.04
2186 5299 1.742268 GCAGAAGAAACATGCCCTCTC 59.258 52.381 0.00 0.00 33.81 3.20
2187 5300 1.831580 GCAGAAGAAACATGCCCTCT 58.168 50.000 0.00 0.00 33.81 3.69
2188 5301 0.449388 CGCAGAAGAAACATGCCCTC 59.551 55.000 0.00 0.00 36.60 4.30
2189 5302 0.962356 CCGCAGAAGAAACATGCCCT 60.962 55.000 0.00 0.00 36.60 5.19
2190 5303 0.960364 TCCGCAGAAGAAACATGCCC 60.960 55.000 0.00 0.00 36.60 5.36
2191 5304 0.169009 GTCCGCAGAAGAAACATGCC 59.831 55.000 0.00 0.00 36.60 4.40
2192 5305 1.135859 CAGTCCGCAGAAGAAACATGC 60.136 52.381 0.00 0.00 36.60 4.06
2193 5306 1.135859 GCAGTCCGCAGAAGAAACATG 60.136 52.381 0.00 0.00 41.79 3.21
2194 5307 1.160137 GCAGTCCGCAGAAGAAACAT 58.840 50.000 0.00 0.00 41.79 2.71
2195 5308 1.221466 CGCAGTCCGCAGAAGAAACA 61.221 55.000 0.00 0.00 42.60 2.83
2196 5309 1.493311 CGCAGTCCGCAGAAGAAAC 59.507 57.895 0.00 0.00 42.60 2.78
2197 5310 1.667830 CCGCAGTCCGCAGAAGAAA 60.668 57.895 0.00 0.00 42.60 2.52
2198 5311 2.048222 CCGCAGTCCGCAGAAGAA 60.048 61.111 0.00 0.00 42.60 2.52
2199 5312 3.282745 GACCGCAGTCCGCAGAAGA 62.283 63.158 0.00 0.00 42.60 2.87
2200 5313 2.811317 GACCGCAGTCCGCAGAAG 60.811 66.667 0.00 0.00 42.60 2.85
2201 5314 4.717629 CGACCGCAGTCCGCAGAA 62.718 66.667 0.00 0.00 42.60 3.02
2214 5327 2.006772 CAGAATTACGGCAGCGACC 58.993 57.895 0.00 0.00 0.00 4.79
2215 5328 1.348594 GCAGAATTACGGCAGCGAC 59.651 57.895 0.00 0.00 39.38 5.19
2216 5329 1.813753 GGCAGAATTACGGCAGCGA 60.814 57.895 0.00 0.00 41.24 4.93
2217 5330 1.643868 TTGGCAGAATTACGGCAGCG 61.644 55.000 3.50 0.00 41.24 5.18
2218 5331 0.525761 TTTGGCAGAATTACGGCAGC 59.474 50.000 3.50 0.00 41.24 5.25
2219 5332 3.181397 CAATTTGGCAGAATTACGGCAG 58.819 45.455 7.13 0.00 41.24 4.85
2220 5333 2.673610 GCAATTTGGCAGAATTACGGCA 60.674 45.455 0.00 0.00 41.24 5.69
2221 5334 1.926510 GCAATTTGGCAGAATTACGGC 59.073 47.619 0.00 0.00 38.89 5.68
2222 5335 3.229276 TGCAATTTGGCAGAATTACGG 57.771 42.857 0.00 0.00 39.25 4.02
2232 5345 5.642919 TCCTGTTTTTGATATGCAATTTGGC 59.357 36.000 0.00 0.00 36.15 4.52
2233 5346 6.183360 CGTCCTGTTTTTGATATGCAATTTGG 60.183 38.462 0.00 0.00 36.15 3.28
2234 5347 6.365789 ACGTCCTGTTTTTGATATGCAATTTG 59.634 34.615 0.00 0.00 36.15 2.32
2235 5348 6.365789 CACGTCCTGTTTTTGATATGCAATTT 59.634 34.615 0.00 0.00 36.15 1.82
2236 5349 5.863397 CACGTCCTGTTTTTGATATGCAATT 59.137 36.000 0.00 0.00 36.15 2.32
2237 5350 5.182950 TCACGTCCTGTTTTTGATATGCAAT 59.817 36.000 0.00 0.00 36.15 3.56
2238 5351 4.517075 TCACGTCCTGTTTTTGATATGCAA 59.483 37.500 0.00 0.00 33.88 4.08
2239 5352 4.068599 TCACGTCCTGTTTTTGATATGCA 58.931 39.130 0.00 0.00 0.00 3.96
2240 5353 4.154195 ACTCACGTCCTGTTTTTGATATGC 59.846 41.667 0.00 0.00 0.00 3.14
2241 5354 5.862924 ACTCACGTCCTGTTTTTGATATG 57.137 39.130 0.00 0.00 0.00 1.78
2242 5355 6.698380 AGTACTCACGTCCTGTTTTTGATAT 58.302 36.000 0.00 0.00 0.00 1.63
2243 5356 6.092955 AGTACTCACGTCCTGTTTTTGATA 57.907 37.500 0.00 0.00 0.00 2.15
2244 5357 4.957296 AGTACTCACGTCCTGTTTTTGAT 58.043 39.130 0.00 0.00 0.00 2.57
2245 5358 4.395959 AGTACTCACGTCCTGTTTTTGA 57.604 40.909 0.00 0.00 0.00 2.69
2246 5359 5.526115 TCTAGTACTCACGTCCTGTTTTTG 58.474 41.667 0.00 0.00 0.00 2.44
2247 5360 5.278858 CCTCTAGTACTCACGTCCTGTTTTT 60.279 44.000 0.00 0.00 0.00 1.94
2248 5361 4.217983 CCTCTAGTACTCACGTCCTGTTTT 59.782 45.833 0.00 0.00 0.00 2.43
2249 5362 3.757493 CCTCTAGTACTCACGTCCTGTTT 59.243 47.826 0.00 0.00 0.00 2.83
2250 5363 3.345414 CCTCTAGTACTCACGTCCTGTT 58.655 50.000 0.00 0.00 0.00 3.16
2251 5364 2.355920 CCCTCTAGTACTCACGTCCTGT 60.356 54.545 0.00 0.00 0.00 4.00
2252 5365 2.290464 CCCTCTAGTACTCACGTCCTG 58.710 57.143 0.00 0.00 0.00 3.86
2253 5366 1.914798 ACCCTCTAGTACTCACGTCCT 59.085 52.381 0.00 0.00 0.00 3.85
2254 5367 2.416680 ACCCTCTAGTACTCACGTCC 57.583 55.000 0.00 0.00 0.00 4.79
2255 5368 7.228308 ACAATAATACCCTCTAGTACTCACGTC 59.772 40.741 0.00 0.00 0.00 4.34
2256 5369 7.059156 ACAATAATACCCTCTAGTACTCACGT 58.941 38.462 0.00 0.00 0.00 4.49
2257 5370 7.507733 ACAATAATACCCTCTAGTACTCACG 57.492 40.000 0.00 0.00 0.00 4.35
2258 5371 9.530633 CAAACAATAATACCCTCTAGTACTCAC 57.469 37.037 0.00 0.00 0.00 3.51
2259 5372 9.263446 ACAAACAATAATACCCTCTAGTACTCA 57.737 33.333 0.00 0.00 0.00 3.41
2260 5373 9.530633 CACAAACAATAATACCCTCTAGTACTC 57.469 37.037 0.00 0.00 0.00 2.59
2261 5374 9.043548 ACACAAACAATAATACCCTCTAGTACT 57.956 33.333 0.00 0.00 0.00 2.73
2262 5375 9.095065 CACACAAACAATAATACCCTCTAGTAC 57.905 37.037 0.00 0.00 0.00 2.73
2263 5376 9.038072 TCACACAAACAATAATACCCTCTAGTA 57.962 33.333 0.00 0.00 0.00 1.82
2264 5377 7.913789 TCACACAAACAATAATACCCTCTAGT 58.086 34.615 0.00 0.00 0.00 2.57
2265 5378 8.258007 TCTCACACAAACAATAATACCCTCTAG 58.742 37.037 0.00 0.00 0.00 2.43
2266 5379 8.141298 TCTCACACAAACAATAATACCCTCTA 57.859 34.615 0.00 0.00 0.00 2.43
2267 5380 7.016153 TCTCACACAAACAATAATACCCTCT 57.984 36.000 0.00 0.00 0.00 3.69
2268 5381 7.626452 GCTTCTCACACAAACAATAATACCCTC 60.626 40.741 0.00 0.00 0.00 4.30
2269 5382 6.151144 GCTTCTCACACAAACAATAATACCCT 59.849 38.462 0.00 0.00 0.00 4.34
2270 5383 6.072175 TGCTTCTCACACAAACAATAATACCC 60.072 38.462 0.00 0.00 0.00 3.69
2271 5384 6.908825 TGCTTCTCACACAAACAATAATACC 58.091 36.000 0.00 0.00 0.00 2.73
2272 5385 8.970691 AATGCTTCTCACACAAACAATAATAC 57.029 30.769 0.00 0.00 0.00 1.89
2273 5386 9.979578 AAAATGCTTCTCACACAAACAATAATA 57.020 25.926 0.00 0.00 0.00 0.98
2274 5387 8.767085 CAAAATGCTTCTCACACAAACAATAAT 58.233 29.630 0.00 0.00 0.00 1.28
2275 5388 7.763528 ACAAAATGCTTCTCACACAAACAATAA 59.236 29.630 0.00 0.00 0.00 1.40
2276 5389 7.264221 ACAAAATGCTTCTCACACAAACAATA 58.736 30.769 0.00 0.00 0.00 1.90
2277 5390 6.108015 ACAAAATGCTTCTCACACAAACAAT 58.892 32.000 0.00 0.00 0.00 2.71
2278 5391 5.477510 ACAAAATGCTTCTCACACAAACAA 58.522 33.333 0.00 0.00 0.00 2.83
2279 5392 5.070770 ACAAAATGCTTCTCACACAAACA 57.929 34.783 0.00 0.00 0.00 2.83
2280 5393 6.972328 TCTAACAAAATGCTTCTCACACAAAC 59.028 34.615 0.00 0.00 0.00 2.93
2281 5394 7.094508 TCTAACAAAATGCTTCTCACACAAA 57.905 32.000 0.00 0.00 0.00 2.83
2282 5395 6.691754 TCTAACAAAATGCTTCTCACACAA 57.308 33.333 0.00 0.00 0.00 3.33
2283 5396 6.691754 TTCTAACAAAATGCTTCTCACACA 57.308 33.333 0.00 0.00 0.00 3.72
2284 5397 9.677567 TTAATTCTAACAAAATGCTTCTCACAC 57.322 29.630 0.00 0.00 0.00 3.82
2285 5398 9.677567 GTTAATTCTAACAAAATGCTTCTCACA 57.322 29.630 0.00 0.00 37.85 3.58
2286 5399 9.677567 TGTTAATTCTAACAAAATGCTTCTCAC 57.322 29.630 0.00 0.00 43.50 3.51
2299 5412 5.771469 TCGACTCGGTTGTTAATTCTAACA 58.229 37.500 0.00 0.00 44.51 2.41
2300 5413 6.033302 GTCTCGACTCGGTTGTTAATTCTAAC 59.967 42.308 0.00 0.00 38.34 2.34
2301 5414 6.088824 GTCTCGACTCGGTTGTTAATTCTAA 58.911 40.000 0.00 0.00 0.00 2.10
2302 5415 5.634896 GTCTCGACTCGGTTGTTAATTCTA 58.365 41.667 0.00 0.00 0.00 2.10
2303 5416 4.483311 GTCTCGACTCGGTTGTTAATTCT 58.517 43.478 0.00 0.00 0.00 2.40
2304 5417 3.300066 CGTCTCGACTCGGTTGTTAATTC 59.700 47.826 0.00 0.00 0.00 2.17
2305 5418 3.240069 CGTCTCGACTCGGTTGTTAATT 58.760 45.455 0.00 0.00 0.00 1.40
2306 5419 2.227388 ACGTCTCGACTCGGTTGTTAAT 59.773 45.455 0.00 0.00 0.00 1.40
2307 5420 1.603802 ACGTCTCGACTCGGTTGTTAA 59.396 47.619 0.00 0.00 0.00 2.01
2308 5421 1.229428 ACGTCTCGACTCGGTTGTTA 58.771 50.000 0.00 0.00 0.00 2.41
2309 5422 1.229428 TACGTCTCGACTCGGTTGTT 58.771 50.000 0.00 0.00 0.00 2.83
2310 5423 1.069636 GTTACGTCTCGACTCGGTTGT 60.070 52.381 0.00 0.00 0.00 3.32
2311 5424 1.196354 AGTTACGTCTCGACTCGGTTG 59.804 52.381 0.00 0.00 0.00 3.77
2312 5425 1.517242 AGTTACGTCTCGACTCGGTT 58.483 50.000 0.00 0.00 0.00 4.44
2313 5426 1.462670 GAAGTTACGTCTCGACTCGGT 59.537 52.381 0.00 0.00 0.00 4.69
2314 5427 1.462283 TGAAGTTACGTCTCGACTCGG 59.538 52.381 0.00 0.00 0.00 4.63
2315 5428 2.869358 TGAAGTTACGTCTCGACTCG 57.131 50.000 0.00 0.00 0.00 4.18
2316 5429 3.881795 TGTTGAAGTTACGTCTCGACTC 58.118 45.455 0.00 0.00 0.00 3.36
2317 5430 3.976793 TGTTGAAGTTACGTCTCGACT 57.023 42.857 0.00 0.00 0.00 4.18
2318 5431 4.143389 CCATTGTTGAAGTTACGTCTCGAC 60.143 45.833 0.00 0.00 0.00 4.20
2319 5432 3.985279 CCATTGTTGAAGTTACGTCTCGA 59.015 43.478 0.00 0.00 0.00 4.04
2320 5433 3.122948 CCCATTGTTGAAGTTACGTCTCG 59.877 47.826 0.00 0.00 0.00 4.04
2321 5434 3.120304 GCCCATTGTTGAAGTTACGTCTC 60.120 47.826 0.00 0.00 0.00 3.36
2322 5435 2.812011 GCCCATTGTTGAAGTTACGTCT 59.188 45.455 0.00 0.00 0.00 4.18
2323 5436 2.550606 TGCCCATTGTTGAAGTTACGTC 59.449 45.455 0.00 0.00 0.00 4.34
2324 5437 2.552315 CTGCCCATTGTTGAAGTTACGT 59.448 45.455 0.00 0.00 0.00 3.57
2325 5438 2.668279 GCTGCCCATTGTTGAAGTTACG 60.668 50.000 0.00 0.00 0.00 3.18
2326 5439 2.668279 CGCTGCCCATTGTTGAAGTTAC 60.668 50.000 0.00 0.00 0.00 2.50
2327 5440 1.539388 CGCTGCCCATTGTTGAAGTTA 59.461 47.619 0.00 0.00 0.00 2.24
2328 5441 0.314935 CGCTGCCCATTGTTGAAGTT 59.685 50.000 0.00 0.00 0.00 2.66
2329 5442 1.959085 CGCTGCCCATTGTTGAAGT 59.041 52.632 0.00 0.00 0.00 3.01
2330 5443 1.444895 GCGCTGCCCATTGTTGAAG 60.445 57.895 0.00 0.00 0.00 3.02
2331 5444 1.902918 AGCGCTGCCCATTGTTGAA 60.903 52.632 10.39 0.00 0.00 2.69
2332 5445 2.282391 AGCGCTGCCCATTGTTGA 60.282 55.556 10.39 0.00 0.00 3.18
2333 5446 2.126228 CAGCGCTGCCCATTGTTG 60.126 61.111 26.68 0.00 0.00 3.33
2334 5447 3.376078 CCAGCGCTGCCCATTGTT 61.376 61.111 31.96 0.00 0.00 2.83
2359 5472 4.637489 CTGAGCCTCCGCCGATCG 62.637 72.222 8.51 8.51 34.57 3.69
2360 5473 2.485188 GATCTGAGCCTCCGCCGATC 62.485 65.000 0.00 0.00 34.57 3.69
2361 5474 2.522923 ATCTGAGCCTCCGCCGAT 60.523 61.111 0.00 0.00 34.57 4.18
2362 5475 3.219928 GATCTGAGCCTCCGCCGA 61.220 66.667 0.00 0.00 34.57 5.54
2363 5476 4.637489 CGATCTGAGCCTCCGCCG 62.637 72.222 0.00 0.00 34.57 6.46
2364 5477 4.292178 CCGATCTGAGCCTCCGCC 62.292 72.222 0.00 0.00 34.57 6.13
2365 5478 4.959596 GCCGATCTGAGCCTCCGC 62.960 72.222 0.00 0.00 0.00 5.54
2366 5479 4.292178 GGCCGATCTGAGCCTCCG 62.292 72.222 10.19 0.00 46.14 4.63
2371 5484 2.107953 GAGGTGGCCGATCTGAGC 59.892 66.667 0.00 0.00 0.00 4.26
2372 5485 2.801631 GGGAGGTGGCCGATCTGAG 61.802 68.421 0.00 0.00 0.00 3.35
2373 5486 2.764128 GGGAGGTGGCCGATCTGA 60.764 66.667 0.00 0.00 0.00 3.27
2374 5487 4.227134 CGGGAGGTGGCCGATCTG 62.227 72.222 0.00 0.00 0.00 2.90
2385 5498 3.790437 ATCAGCCAGTGCGGGAGG 61.790 66.667 0.00 0.00 44.33 4.30
2386 5499 2.513204 CATCAGCCAGTGCGGGAG 60.513 66.667 0.00 0.00 44.33 4.30
2387 5500 4.783621 GCATCAGCCAGTGCGGGA 62.784 66.667 0.00 0.00 44.33 5.14
2402 5515 3.398310 TGGTGATGCTAGGGCGCA 61.398 61.111 10.83 0.00 45.10 6.09
2403 5516 2.897350 GTGGTGATGCTAGGGCGC 60.897 66.667 0.00 0.00 42.25 6.53
2404 5517 2.203070 GGTGGTGATGCTAGGGCG 60.203 66.667 0.00 0.00 42.25 6.13
2405 5518 1.153086 CAGGTGGTGATGCTAGGGC 60.153 63.158 0.00 0.00 39.26 5.19
2406 5519 1.135094 ATCAGGTGGTGATGCTAGGG 58.865 55.000 0.00 0.00 44.82 3.53
2407 5520 3.643320 TCTAATCAGGTGGTGATGCTAGG 59.357 47.826 0.00 0.00 45.89 3.02
2408 5521 4.944619 TCTAATCAGGTGGTGATGCTAG 57.055 45.455 0.00 0.00 45.89 3.42
2409 5522 4.021981 CGATCTAATCAGGTGGTGATGCTA 60.022 45.833 0.00 0.00 45.89 3.49
2410 5523 3.244009 CGATCTAATCAGGTGGTGATGCT 60.244 47.826 0.00 0.00 45.89 3.79
2411 5524 3.062763 CGATCTAATCAGGTGGTGATGC 58.937 50.000 0.00 0.00 45.89 3.91
2412 5525 4.038522 AGACGATCTAATCAGGTGGTGATG 59.961 45.833 0.00 0.00 45.89 3.07
2414 5527 3.632333 AGACGATCTAATCAGGTGGTGA 58.368 45.455 0.00 0.00 40.38 4.02
2415 5528 4.363999 GAAGACGATCTAATCAGGTGGTG 58.636 47.826 0.00 0.00 0.00 4.17
2416 5529 3.385111 GGAAGACGATCTAATCAGGTGGT 59.615 47.826 0.00 0.00 0.00 4.16
2417 5530 3.243907 GGGAAGACGATCTAATCAGGTGG 60.244 52.174 0.00 0.00 0.00 4.61
2418 5531 3.639094 AGGGAAGACGATCTAATCAGGTG 59.361 47.826 0.00 0.00 0.00 4.00
2419 5532 3.639094 CAGGGAAGACGATCTAATCAGGT 59.361 47.826 0.00 0.00 0.00 4.00
2420 5533 3.639094 ACAGGGAAGACGATCTAATCAGG 59.361 47.826 0.00 0.00 0.00 3.86
2421 5534 4.582656 AGACAGGGAAGACGATCTAATCAG 59.417 45.833 0.00 0.00 0.00 2.90
2422 5535 4.537751 AGACAGGGAAGACGATCTAATCA 58.462 43.478 0.00 0.00 0.00 2.57
2423 5536 4.022676 GGAGACAGGGAAGACGATCTAATC 60.023 50.000 0.00 0.00 0.00 1.75
2424 5537 3.892588 GGAGACAGGGAAGACGATCTAAT 59.107 47.826 0.00 0.00 0.00 1.73
2425 5538 3.288964 GGAGACAGGGAAGACGATCTAA 58.711 50.000 0.00 0.00 0.00 2.10
2426 5539 2.423088 GGGAGACAGGGAAGACGATCTA 60.423 54.545 0.00 0.00 0.00 1.98
2427 5540 1.686741 GGGAGACAGGGAAGACGATCT 60.687 57.143 0.00 0.00 0.00 2.75
2428 5541 0.747852 GGGAGACAGGGAAGACGATC 59.252 60.000 0.00 0.00 0.00 3.69
2429 5542 2.903404 GGGAGACAGGGAAGACGAT 58.097 57.895 0.00 0.00 0.00 3.73
2430 5543 4.436368 GGGAGACAGGGAAGACGA 57.564 61.111 0.00 0.00 0.00 4.20
2729 5842 3.969802 GCGCATAGGGCATGTGGC 61.970 66.667 0.30 0.00 44.00 5.01
2730 5843 2.516695 TGCGCATAGGGCATGTGG 60.517 61.111 5.66 0.00 46.09 4.17
2737 5850 4.838152 ACTGGCGTGCGCATAGGG 62.838 66.667 15.91 4.72 44.11 3.53
2738 5851 3.264897 GACTGGCGTGCGCATAGG 61.265 66.667 15.91 7.62 44.11 2.57
2739 5852 3.620428 CGACTGGCGTGCGCATAG 61.620 66.667 15.91 12.85 44.11 2.23
2750 5863 2.825836 GGATGGCAAGGCGACTGG 60.826 66.667 0.00 0.00 42.68 4.00
2751 5864 2.825836 GGGATGGCAAGGCGACTG 60.826 66.667 0.00 0.00 42.68 3.51
2753 5866 4.778143 ACGGGATGGCAAGGCGAC 62.778 66.667 0.00 0.00 0.00 5.19
2754 5867 4.467084 GACGGGATGGCAAGGCGA 62.467 66.667 0.00 0.00 0.00 5.54
2755 5868 4.776322 TGACGGGATGGCAAGGCG 62.776 66.667 0.00 0.00 0.00 5.52
2756 5869 3.134127 GTGACGGGATGGCAAGGC 61.134 66.667 0.00 0.00 0.00 4.35
2757 5870 2.819595 CGTGACGGGATGGCAAGG 60.820 66.667 0.00 0.00 0.00 3.61
2758 5871 1.635663 GAACGTGACGGGATGGCAAG 61.636 60.000 10.66 0.00 0.00 4.01
2759 5872 1.669760 GAACGTGACGGGATGGCAA 60.670 57.895 10.66 0.00 0.00 4.52
2760 5873 2.047655 GAACGTGACGGGATGGCA 60.048 61.111 10.66 0.00 0.00 4.92
2761 5874 2.818274 GGAACGTGACGGGATGGC 60.818 66.667 10.66 0.00 0.00 4.40
2762 5875 1.447838 CTGGAACGTGACGGGATGG 60.448 63.158 10.66 0.00 0.00 3.51
2763 5876 0.320421 AACTGGAACGTGACGGGATG 60.320 55.000 10.66 0.00 0.00 3.51
2764 5877 0.320421 CAACTGGAACGTGACGGGAT 60.320 55.000 10.66 0.00 0.00 3.85
2765 5878 1.068417 CAACTGGAACGTGACGGGA 59.932 57.895 10.66 0.00 0.00 5.14
2766 5879 2.604174 GCAACTGGAACGTGACGGG 61.604 63.158 10.66 0.00 0.00 5.28
2767 5880 1.831389 CTGCAACTGGAACGTGACGG 61.831 60.000 10.66 0.00 0.00 4.79
2768 5881 1.564622 CTGCAACTGGAACGTGACG 59.435 57.895 2.24 2.24 0.00 4.35
2769 5882 1.279840 GCTGCAACTGGAACGTGAC 59.720 57.895 0.00 0.00 0.00 3.67
2770 5883 1.153269 TGCTGCAACTGGAACGTGA 60.153 52.632 0.00 0.00 0.00 4.35
2771 5884 1.009675 GTGCTGCAACTGGAACGTG 60.010 57.895 2.77 0.00 0.00 4.49
2772 5885 2.186826 GGTGCTGCAACTGGAACGT 61.187 57.895 11.11 0.00 0.00 3.99
2773 5886 2.639286 GGTGCTGCAACTGGAACG 59.361 61.111 11.11 0.00 0.00 3.95
2774 5887 2.117941 GACGGTGCTGCAACTGGAAC 62.118 60.000 16.61 0.00 0.00 3.62
2775 5888 1.891919 GACGGTGCTGCAACTGGAA 60.892 57.895 16.61 0.00 0.00 3.53
2776 5889 2.280797 GACGGTGCTGCAACTGGA 60.281 61.111 16.61 0.00 0.00 3.86
2777 5890 1.723608 TTTGACGGTGCTGCAACTGG 61.724 55.000 16.61 3.42 0.00 4.00
2778 5891 0.317269 CTTTGACGGTGCTGCAACTG 60.317 55.000 16.61 11.64 0.00 3.16
2779 5892 2.024918 CTTTGACGGTGCTGCAACT 58.975 52.632 16.61 2.57 0.00 3.16
2780 5893 1.658409 GCTTTGACGGTGCTGCAAC 60.658 57.895 7.83 7.83 0.00 4.17
2781 5894 2.721231 GCTTTGACGGTGCTGCAA 59.279 55.556 2.77 0.00 0.00 4.08
2782 5895 3.286751 GGCTTTGACGGTGCTGCA 61.287 61.111 0.00 0.00 0.00 4.41
2783 5896 2.970974 GAGGCTTTGACGGTGCTGC 61.971 63.158 0.00 0.00 0.00 5.25
2784 5897 2.671177 CGAGGCTTTGACGGTGCTG 61.671 63.158 0.00 0.00 0.00 4.41
2785 5898 2.357517 CGAGGCTTTGACGGTGCT 60.358 61.111 0.00 0.00 0.00 4.40
2786 5899 4.090057 GCGAGGCTTTGACGGTGC 62.090 66.667 0.00 0.00 0.00 5.01
2787 5900 3.423154 GGCGAGGCTTTGACGGTG 61.423 66.667 0.00 0.00 0.00 4.94
2788 5901 3.936203 TGGCGAGGCTTTGACGGT 61.936 61.111 0.00 0.00 0.00 4.83
2789 5902 3.423154 GTGGCGAGGCTTTGACGG 61.423 66.667 0.00 0.00 0.00 4.79
2790 5903 1.577328 AATGTGGCGAGGCTTTGACG 61.577 55.000 0.00 0.00 0.00 4.35
2791 5904 0.109597 CAATGTGGCGAGGCTTTGAC 60.110 55.000 0.00 0.00 0.00 3.18
2792 5905 1.865788 GCAATGTGGCGAGGCTTTGA 61.866 55.000 0.00 0.00 0.00 2.69
2793 5906 1.444895 GCAATGTGGCGAGGCTTTG 60.445 57.895 0.00 0.00 0.00 2.77
2794 5907 0.322456 TAGCAATGTGGCGAGGCTTT 60.322 50.000 0.00 0.00 39.27 3.51
2795 5908 0.745845 CTAGCAATGTGGCGAGGCTT 60.746 55.000 0.00 0.00 39.27 4.35
2796 5909 1.153289 CTAGCAATGTGGCGAGGCT 60.153 57.895 0.00 0.00 39.27 4.58
2797 5910 2.828128 GCTAGCAATGTGGCGAGGC 61.828 63.158 10.63 0.00 37.06 4.70
2798 5911 0.745845 AAGCTAGCAATGTGGCGAGG 60.746 55.000 18.83 0.00 37.06 4.63
2799 5912 0.376152 CAAGCTAGCAATGTGGCGAG 59.624 55.000 18.83 0.00 39.22 5.03
2800 5913 0.321564 ACAAGCTAGCAATGTGGCGA 60.322 50.000 21.16 0.00 39.27 5.54
2801 5914 0.179181 CACAAGCTAGCAATGTGGCG 60.179 55.000 30.92 15.95 40.51 5.69
2802 5915 0.457337 GCACAAGCTAGCAATGTGGC 60.457 55.000 35.05 27.62 43.54 5.01
2803 5916 0.171903 GGCACAAGCTAGCAATGTGG 59.828 55.000 35.05 24.27 43.54 4.17
2804 5917 0.171903 GGGCACAAGCTAGCAATGTG 59.828 55.000 32.73 32.73 45.54 3.21
2805 5918 0.038744 AGGGCACAAGCTAGCAATGT 59.961 50.000 18.83 18.06 41.70 2.71
2806 5919 0.737219 GAGGGCACAAGCTAGCAATG 59.263 55.000 18.83 17.39 41.70 2.82
2807 5920 0.745845 CGAGGGCACAAGCTAGCAAT 60.746 55.000 18.83 1.77 41.70 3.56
2808 5921 1.375908 CGAGGGCACAAGCTAGCAA 60.376 57.895 18.83 0.00 41.70 3.91
2809 5922 2.265739 CGAGGGCACAAGCTAGCA 59.734 61.111 18.83 0.00 41.70 3.49
2810 5923 3.198489 GCGAGGGCACAAGCTAGC 61.198 66.667 6.62 6.62 41.70 3.42
2811 5924 2.512515 GGCGAGGGCACAAGCTAG 60.513 66.667 5.67 0.00 42.47 3.42
2812 5925 4.451150 CGGCGAGGGCACAAGCTA 62.451 66.667 0.00 0.00 42.47 3.32
2815 5928 2.978010 AAACGGCGAGGGCACAAG 60.978 61.111 16.62 0.00 42.47 3.16
2816 5929 3.283684 CAAACGGCGAGGGCACAA 61.284 61.111 16.62 0.00 42.47 3.33
2821 5934 3.047877 GTGACCAAACGGCGAGGG 61.048 66.667 16.62 14.33 0.00 4.30
2822 5935 2.030562 AGTGACCAAACGGCGAGG 59.969 61.111 16.62 15.08 0.00 4.63
2823 5936 1.300620 TCAGTGACCAAACGGCGAG 60.301 57.895 16.62 2.39 0.00 5.03
2824 5937 1.593209 GTCAGTGACCAAACGGCGA 60.593 57.895 16.62 0.00 0.00 5.54
2825 5938 2.935955 GTCAGTGACCAAACGGCG 59.064 61.111 12.54 4.80 0.00 6.46
2826 5939 2.604174 CCGTCAGTGACCAAACGGC 61.604 63.158 17.57 0.00 46.89 5.68
2828 5941 0.303493 CAACCGTCAGTGACCAAACG 59.697 55.000 17.57 6.02 35.01 3.60
2829 5942 0.028902 GCAACCGTCAGTGACCAAAC 59.971 55.000 17.57 0.29 0.00 2.93
2830 5943 0.393132 TGCAACCGTCAGTGACCAAA 60.393 50.000 17.57 0.00 0.00 3.28
2831 5944 0.393132 TTGCAACCGTCAGTGACCAA 60.393 50.000 17.57 11.97 0.00 3.67
2832 5945 1.092921 GTTGCAACCGTCAGTGACCA 61.093 55.000 19.15 6.39 0.00 4.02
2833 5946 1.092921 TGTTGCAACCGTCAGTGACC 61.093 55.000 26.14 3.71 0.00 4.02
2834 5947 0.027586 GTGTTGCAACCGTCAGTGAC 59.972 55.000 26.14 13.56 0.00 3.67
2835 5948 0.391793 TGTGTTGCAACCGTCAGTGA 60.392 50.000 26.14 2.32 0.00 3.41
2836 5949 0.449786 TTGTGTTGCAACCGTCAGTG 59.550 50.000 26.14 0.00 31.07 3.66
2837 5950 2.861364 TTGTGTTGCAACCGTCAGT 58.139 47.368 26.14 0.00 31.07 3.41
2845 5958 2.427453 ACCGTTAATGGTTGTGTTGCAA 59.573 40.909 13.90 0.00 39.99 4.08
2846 5959 2.025155 ACCGTTAATGGTTGTGTTGCA 58.975 42.857 13.90 0.00 39.99 4.08
2847 5960 2.785713 ACCGTTAATGGTTGTGTTGC 57.214 45.000 13.90 0.00 39.99 4.17
2855 5968 1.539827 GAAGCTGCAACCGTTAATGGT 59.460 47.619 13.90 13.90 46.67 3.55
2856 5969 1.812571 AGAAGCTGCAACCGTTAATGG 59.187 47.619 12.41 12.41 0.00 3.16
2857 5970 3.492313 GAAGAAGCTGCAACCGTTAATG 58.508 45.455 1.02 0.00 0.00 1.90
2858 5971 2.488153 GGAAGAAGCTGCAACCGTTAAT 59.512 45.455 1.02 0.00 0.00 1.40
2859 5972 1.877443 GGAAGAAGCTGCAACCGTTAA 59.123 47.619 1.02 0.00 0.00 2.01
2860 5973 1.202710 TGGAAGAAGCTGCAACCGTTA 60.203 47.619 1.02 0.00 0.00 3.18
2861 5974 0.465460 TGGAAGAAGCTGCAACCGTT 60.465 50.000 1.02 0.00 0.00 4.44
2862 5975 0.250901 ATGGAAGAAGCTGCAACCGT 60.251 50.000 1.02 0.00 0.00 4.83
2863 5976 0.449388 GATGGAAGAAGCTGCAACCG 59.551 55.000 1.02 0.00 0.00 4.44
2864 5977 0.449388 CGATGGAAGAAGCTGCAACC 59.551 55.000 1.02 0.00 0.00 3.77
2865 5978 0.449388 CCGATGGAAGAAGCTGCAAC 59.551 55.000 1.02 0.00 0.00 4.17
2866 5979 0.036732 ACCGATGGAAGAAGCTGCAA 59.963 50.000 1.02 0.00 0.00 4.08
2867 5980 0.674581 CACCGATGGAAGAAGCTGCA 60.675 55.000 1.02 0.00 0.00 4.41
2868 5981 0.674895 ACACCGATGGAAGAAGCTGC 60.675 55.000 0.00 0.00 0.00 5.25
2869 5982 1.466167 CAACACCGATGGAAGAAGCTG 59.534 52.381 0.00 0.00 0.00 4.24
2870 5983 1.813513 CAACACCGATGGAAGAAGCT 58.186 50.000 0.00 0.00 0.00 3.74
2871 5984 0.169009 GCAACACCGATGGAAGAAGC 59.831 55.000 0.00 0.00 0.00 3.86
2872 5985 1.466167 CTGCAACACCGATGGAAGAAG 59.534 52.381 0.00 0.00 0.00 2.85
2873 5986 1.522668 CTGCAACACCGATGGAAGAA 58.477 50.000 0.00 0.00 0.00 2.52
2874 5987 0.955428 GCTGCAACACCGATGGAAGA 60.955 55.000 0.00 0.00 0.00 2.87
2875 5988 0.957395 AGCTGCAACACCGATGGAAG 60.957 55.000 1.02 0.00 0.00 3.46
2876 5989 0.537143 AAGCTGCAACACCGATGGAA 60.537 50.000 1.02 0.00 0.00 3.53
2877 5990 0.537143 AAAGCTGCAACACCGATGGA 60.537 50.000 1.02 0.00 0.00 3.41
2878 5991 0.314935 AAAAGCTGCAACACCGATGG 59.685 50.000 1.02 0.00 0.00 3.51
2879 5992 1.269206 ACAAAAGCTGCAACACCGATG 60.269 47.619 1.02 0.00 0.00 3.84
2880 5993 1.032014 ACAAAAGCTGCAACACCGAT 58.968 45.000 1.02 0.00 0.00 4.18
2881 5994 0.100325 CACAAAAGCTGCAACACCGA 59.900 50.000 1.02 0.00 0.00 4.69
2882 5995 1.481819 GCACAAAAGCTGCAACACCG 61.482 55.000 1.02 0.00 34.56 4.94
2883 5996 1.153597 GGCACAAAAGCTGCAACACC 61.154 55.000 1.02 0.00 36.27 4.16
2884 5997 1.481819 CGGCACAAAAGCTGCAACAC 61.482 55.000 1.02 0.00 36.27 3.32
2885 5998 1.226916 CGGCACAAAAGCTGCAACA 60.227 52.632 1.02 0.00 36.27 3.33
2886 5999 1.950630 CCGGCACAAAAGCTGCAAC 60.951 57.895 1.02 0.00 39.58 4.17
2887 6000 2.416678 CCGGCACAAAAGCTGCAA 59.583 55.556 1.02 0.00 39.58 4.08
2888 6001 4.283403 GCCGGCACAAAAGCTGCA 62.283 61.111 24.80 0.00 39.58 4.41
2890 6003 4.705519 CGGCCGGCACAAAAGCTG 62.706 66.667 30.85 0.00 40.60 4.24
2893 6006 3.551887 GAACCGGCCGGCACAAAAG 62.552 63.158 43.58 18.37 39.32 2.27
2894 6007 3.597728 GAACCGGCCGGCACAAAA 61.598 61.111 43.58 0.00 39.32 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.