Multiple sequence alignment - TraesCS3D01G132600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G132600 chr3D 100.000 2744 0 0 1 2744 92264890 92262147 0.000000e+00 5068.0
1 TraesCS3D01G132600 chr3D 92.611 1854 82 17 364 2175 91833764 91831924 0.000000e+00 2614.0
2 TraesCS3D01G132600 chr3D 89.319 1498 146 13 636 2127 92360216 92358727 0.000000e+00 1868.0
3 TraesCS3D01G132600 chr3D 89.694 1407 134 8 730 2127 92125240 92123836 0.000000e+00 1784.0
4 TraesCS3D01G132600 chr3D 87.444 1553 168 20 632 2170 91802890 91801351 0.000000e+00 1762.0
5 TraesCS3D01G132600 chr3D 97.712 306 5 1 2441 2744 91831599 91831294 2.420000e-145 525.0
6 TraesCS3D01G132600 chr3D 88.997 309 28 4 2440 2744 92216312 92216006 7.170000e-101 377.0
7 TraesCS3D01G132600 chr3D 85.761 309 35 6 2442 2744 91801275 91800970 4.410000e-83 318.0
8 TraesCS3D01G132600 chr3D 86.316 190 5 15 123 310 91833954 91833784 1.300000e-43 187.0
9 TraesCS3D01G132600 chr3D 95.455 66 3 0 2375 2440 91831621 91831556 3.740000e-19 106.0
10 TraesCS3D01G132600 chr3D 100.000 35 0 0 2337 2371 91831925 91831891 6.340000e-07 65.8
11 TraesCS3D01G132600 chr3D 97.436 39 0 1 66 103 91833994 91833956 6.340000e-07 65.8
12 TraesCS3D01G132600 chr3B 89.011 1547 144 17 636 2170 141864529 141862997 0.000000e+00 1892.0
13 TraesCS3D01G132600 chr3B 87.778 1571 150 24 631 2170 141815819 141814260 0.000000e+00 1799.0
14 TraesCS3D01G132600 chr3B 90.494 1052 95 5 729 1777 141752484 141751435 0.000000e+00 1384.0
15 TraesCS3D01G132600 chr3B 96.732 306 8 2 2441 2744 141808997 141808692 2.440000e-140 508.0
16 TraesCS3D01G132600 chr3B 87.296 307 35 3 2440 2744 141862928 141862624 5.620000e-92 348.0
17 TraesCS3D01G132600 chr3B 86.731 309 32 6 2442 2744 141745611 141745306 4.380000e-88 335.0
18 TraesCS3D01G132600 chr3B 85.761 309 35 6 2442 2744 141814184 141813879 4.410000e-83 318.0
19 TraesCS3D01G132600 chr3B 94.776 134 7 0 2042 2175 141809362 141809229 2.770000e-50 209.0
20 TraesCS3D01G132600 chr3B 95.455 66 3 0 2375 2440 141809019 141808954 3.740000e-19 106.0
21 TraesCS3D01G132600 chr3A 86.738 1674 178 35 525 2170 545358823 545357166 0.000000e+00 1821.0
22 TraesCS3D01G132600 chr3A 95.074 1015 33 4 1178 2175 545364841 545363827 0.000000e+00 1581.0
23 TraesCS3D01G132600 chr3A 88.230 1130 121 11 636 1761 545892272 545891151 0.000000e+00 1339.0
24 TraesCS3D01G132600 chr3A 86.842 646 72 9 1530 2170 545891150 545890513 0.000000e+00 710.0
25 TraesCS3D01G132600 chr3A 87.702 309 32 3 2440 2744 545357130 545356824 3.360000e-94 355.0
26 TraesCS3D01G132600 chr3A 87.338 308 33 4 2441 2744 545890443 545890138 5.620000e-92 348.0
27 TraesCS3D01G132600 chr3A 88.031 259 24 3 235 486 545372772 545372514 1.600000e-77 300.0
28 TraesCS3D01G132600 chr3A 92.913 127 7 2 66 190 545372896 545372770 1.680000e-42 183.0
29 TraesCS3D01G132600 chr3A 89.474 114 2 1 2337 2440 545363828 545363715 4.770000e-28 135.0
30 TraesCS3D01G132600 chr7B 93.452 168 11 0 2172 2339 281384671 281384504 1.630000e-62 250.0
31 TraesCS3D01G132600 chr2D 93.373 166 9 2 2174 2338 78766006 78766170 7.590000e-61 244.0
32 TraesCS3D01G132600 chr1D 92.771 166 12 0 2174 2339 293904765 293904600 9.820000e-60 241.0
33 TraesCS3D01G132600 chr1D 91.765 170 14 0 2171 2340 220154131 220154300 1.270000e-58 237.0
34 TraesCS3D01G132600 chr6B 92.216 167 13 0 2174 2340 151137077 151136911 1.270000e-58 237.0
35 TraesCS3D01G132600 chr5D 91.279 172 13 2 2174 2344 35164437 35164267 1.640000e-57 233.0
36 TraesCS3D01G132600 chr5D 90.503 179 11 5 2171 2347 324659659 324659485 5.910000e-57 231.0
37 TraesCS3D01G132600 chr5D 98.214 56 1 0 2 57 193139820 193139765 6.250000e-17 99.0
38 TraesCS3D01G132600 chr7D 90.286 175 17 0 2164 2338 246603626 246603800 2.130000e-56 230.0
39 TraesCS3D01G132600 chr5B 90.286 175 17 0 2171 2345 262533789 262533615 2.130000e-56 230.0
40 TraesCS3D01G132600 chr5B 92.982 57 4 0 1 57 692225857 692225801 1.750000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G132600 chr3D 92262147 92264890 2743 True 5068.000000 5068 100.000000 1 2744 1 chr3D.!!$R3 2743
1 TraesCS3D01G132600 chr3D 92358727 92360216 1489 True 1868.000000 1868 89.319000 636 2127 1 chr3D.!!$R4 1491
2 TraesCS3D01G132600 chr3D 92123836 92125240 1404 True 1784.000000 1784 89.694000 730 2127 1 chr3D.!!$R1 1397
3 TraesCS3D01G132600 chr3D 91800970 91802890 1920 True 1040.000000 1762 86.602500 632 2744 2 chr3D.!!$R5 2112
4 TraesCS3D01G132600 chr3D 91831294 91833994 2700 True 593.933333 2614 94.921667 66 2744 6 chr3D.!!$R6 2678
5 TraesCS3D01G132600 chr3B 141751435 141752484 1049 True 1384.000000 1384 90.494000 729 1777 1 chr3B.!!$R2 1048
6 TraesCS3D01G132600 chr3B 141862624 141864529 1905 True 1120.000000 1892 88.153500 636 2744 2 chr3B.!!$R5 2108
7 TraesCS3D01G132600 chr3B 141813879 141815819 1940 True 1058.500000 1799 86.769500 631 2744 2 chr3B.!!$R4 2113
8 TraesCS3D01G132600 chr3B 141808692 141809362 670 True 274.333333 508 95.654333 2042 2744 3 chr3B.!!$R3 702
9 TraesCS3D01G132600 chr3A 545356824 545358823 1999 True 1088.000000 1821 87.220000 525 2744 2 chr3A.!!$R1 2219
10 TraesCS3D01G132600 chr3A 545363715 545364841 1126 True 858.000000 1581 92.274000 1178 2440 2 chr3A.!!$R2 1262
11 TraesCS3D01G132600 chr3A 545890138 545892272 2134 True 799.000000 1339 87.470000 636 2744 3 chr3A.!!$R4 2108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 364 0.106918 AGAAAAACCTCCACCGCACA 60.107 50.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2080 0.329261 TTCACCAGGAGCAGGAATGG 59.671 55.0 0.0 0.0 38.83 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.313118 CTGGCATAAATAGGTTTGAAAAATACC 57.687 33.333 0.00 0.00 0.00 2.73
29 30 8.261522 TGGCATAAATAGGTTTGAAAAATACCC 58.738 33.333 0.00 0.00 32.20 3.69
30 31 8.482943 GGCATAAATAGGTTTGAAAAATACCCT 58.517 33.333 0.00 0.00 32.20 4.34
31 32 9.529325 GCATAAATAGGTTTGAAAAATACCCTC 57.471 33.333 0.00 0.00 32.20 4.30
37 38 9.990868 ATAGGTTTGAAAAATACCCTCTAATGT 57.009 29.630 0.00 0.00 32.20 2.71
39 40 9.816787 AGGTTTGAAAAATACCCTCTAATGTAA 57.183 29.630 0.00 0.00 32.20 2.41
49 50 8.980832 ATACCCTCTAATGTAATCCTTCATCT 57.019 34.615 0.00 0.00 0.00 2.90
50 51 7.309770 ACCCTCTAATGTAATCCTTCATCTC 57.690 40.000 0.00 0.00 0.00 2.75
51 52 6.271159 ACCCTCTAATGTAATCCTTCATCTCC 59.729 42.308 0.00 0.00 0.00 3.71
52 53 6.393990 CCTCTAATGTAATCCTTCATCTCCG 58.606 44.000 0.00 0.00 0.00 4.63
53 54 6.209589 CCTCTAATGTAATCCTTCATCTCCGA 59.790 42.308 0.00 0.00 0.00 4.55
54 55 6.982852 TCTAATGTAATCCTTCATCTCCGAC 58.017 40.000 0.00 0.00 0.00 4.79
55 56 5.878406 AATGTAATCCTTCATCTCCGACT 57.122 39.130 0.00 0.00 0.00 4.18
56 57 4.920640 TGTAATCCTTCATCTCCGACTC 57.079 45.455 0.00 0.00 0.00 3.36
57 58 4.278310 TGTAATCCTTCATCTCCGACTCA 58.722 43.478 0.00 0.00 0.00 3.41
58 59 4.709886 TGTAATCCTTCATCTCCGACTCAA 59.290 41.667 0.00 0.00 0.00 3.02
59 60 5.363868 TGTAATCCTTCATCTCCGACTCAAT 59.636 40.000 0.00 0.00 0.00 2.57
60 61 6.549736 TGTAATCCTTCATCTCCGACTCAATA 59.450 38.462 0.00 0.00 0.00 1.90
61 62 6.485830 AATCCTTCATCTCCGACTCAATAA 57.514 37.500 0.00 0.00 0.00 1.40
62 63 6.678568 ATCCTTCATCTCCGACTCAATAAT 57.321 37.500 0.00 0.00 0.00 1.28
63 64 6.485830 TCCTTCATCTCCGACTCAATAATT 57.514 37.500 0.00 0.00 0.00 1.40
64 65 6.889198 TCCTTCATCTCCGACTCAATAATTT 58.111 36.000 0.00 0.00 0.00 1.82
65 66 6.986817 TCCTTCATCTCCGACTCAATAATTTC 59.013 38.462 0.00 0.00 0.00 2.17
66 67 6.763135 CCTTCATCTCCGACTCAATAATTTCA 59.237 38.462 0.00 0.00 0.00 2.69
67 68 7.443575 CCTTCATCTCCGACTCAATAATTTCAT 59.556 37.037 0.00 0.00 0.00 2.57
68 69 8.737168 TTCATCTCCGACTCAATAATTTCATT 57.263 30.769 0.00 0.00 0.00 2.57
69 70 8.737168 TCATCTCCGACTCAATAATTTCATTT 57.263 30.769 0.00 0.00 0.00 2.32
103 104 7.498900 AGTGATCACTTGTCACAATCTTAACAA 59.501 33.333 22.89 0.00 46.46 2.83
104 105 7.587757 GTGATCACTTGTCACAATCTTAACAAC 59.412 37.037 18.83 0.00 44.13 3.32
105 106 7.498900 TGATCACTTGTCACAATCTTAACAACT 59.501 33.333 0.00 0.00 0.00 3.16
106 107 7.624360 TCACTTGTCACAATCTTAACAACTT 57.376 32.000 0.00 0.00 0.00 2.66
107 108 7.471721 TCACTTGTCACAATCTTAACAACTTG 58.528 34.615 0.00 0.00 0.00 3.16
108 109 7.335673 TCACTTGTCACAATCTTAACAACTTGA 59.664 33.333 0.00 0.00 0.00 3.02
109 110 7.967854 CACTTGTCACAATCTTAACAACTTGAA 59.032 33.333 0.00 0.00 0.00 2.69
110 111 7.968405 ACTTGTCACAATCTTAACAACTTGAAC 59.032 33.333 0.00 0.00 0.00 3.18
111 112 7.384439 TGTCACAATCTTAACAACTTGAACA 57.616 32.000 0.00 0.00 0.00 3.18
112 113 7.471721 TGTCACAATCTTAACAACTTGAACAG 58.528 34.615 0.00 0.00 0.00 3.16
113 114 6.912591 GTCACAATCTTAACAACTTGAACAGG 59.087 38.462 0.00 0.00 0.00 4.00
114 115 6.601613 TCACAATCTTAACAACTTGAACAGGT 59.398 34.615 0.00 0.00 0.00 4.00
116 117 6.601613 ACAATCTTAACAACTTGAACAGGTGA 59.398 34.615 0.00 0.00 44.01 4.02
117 118 7.122055 ACAATCTTAACAACTTGAACAGGTGAA 59.878 33.333 0.00 0.00 44.01 3.18
118 119 7.639113 ATCTTAACAACTTGAACAGGTGAAA 57.361 32.000 0.00 0.00 44.01 2.69
119 120 7.083875 TCTTAACAACTTGAACAGGTGAAAG 57.916 36.000 0.00 0.00 44.01 2.62
120 121 6.657541 TCTTAACAACTTGAACAGGTGAAAGT 59.342 34.615 0.00 0.00 44.01 2.66
121 122 7.825270 TCTTAACAACTTGAACAGGTGAAAGTA 59.175 33.333 0.00 0.00 44.01 2.24
157 158 4.025396 CAGCGCTTAATCAGTGATTTCGAT 60.025 41.667 22.90 18.27 34.56 3.59
209 210 3.785859 GGCCTCGCCCAGACATGA 61.786 66.667 0.00 0.00 44.06 3.07
210 211 2.512515 GCCTCGCCCAGACATGAC 60.513 66.667 0.00 0.00 0.00 3.06
211 212 2.202797 CCTCGCCCAGACATGACG 60.203 66.667 0.00 0.00 0.00 4.35
212 213 2.573869 CTCGCCCAGACATGACGT 59.426 61.111 0.00 0.00 0.00 4.34
213 214 1.807165 CTCGCCCAGACATGACGTG 60.807 63.158 0.00 0.00 0.00 4.49
214 215 3.490759 CGCCCAGACATGACGTGC 61.491 66.667 0.00 0.00 0.00 5.34
215 216 3.127533 GCCCAGACATGACGTGCC 61.128 66.667 0.00 0.00 0.00 5.01
236 237 3.357079 CACACGTGCTTCTGGGCC 61.357 66.667 17.22 0.00 0.00 5.80
237 238 4.988598 ACACGTGCTTCTGGGCCG 62.989 66.667 17.22 0.00 34.12 6.13
316 318 2.984471 TGTTCGCACGAATCTAACTGAC 59.016 45.455 8.91 0.00 36.45 3.51
317 319 1.891178 TCGCACGAATCTAACTGACG 58.109 50.000 0.00 0.00 0.00 4.35
318 320 1.198408 TCGCACGAATCTAACTGACGT 59.802 47.619 0.00 0.00 37.68 4.34
319 321 1.983605 CGCACGAATCTAACTGACGTT 59.016 47.619 0.00 0.00 35.05 3.99
321 323 3.718036 CGCACGAATCTAACTGACGTTTG 60.718 47.826 0.00 0.00 35.05 2.93
322 324 3.722123 CACGAATCTAACTGACGTTTGC 58.278 45.455 0.00 0.00 35.05 3.68
323 325 3.183574 CACGAATCTAACTGACGTTTGCA 59.816 43.478 0.00 0.00 35.05 4.08
324 326 3.183775 ACGAATCTAACTGACGTTTGCAC 59.816 43.478 0.00 0.00 34.59 4.57
325 327 3.428870 CGAATCTAACTGACGTTTGCACT 59.571 43.478 0.00 0.00 34.59 4.40
326 328 4.664139 CGAATCTAACTGACGTTTGCACTG 60.664 45.833 0.00 0.00 34.59 3.66
327 329 3.173668 TCTAACTGACGTTTGCACTGT 57.826 42.857 0.00 0.00 34.59 3.55
328 330 4.310357 TCTAACTGACGTTTGCACTGTA 57.690 40.909 0.00 0.00 34.59 2.74
329 331 4.295870 TCTAACTGACGTTTGCACTGTAG 58.704 43.478 0.00 0.00 34.59 2.74
330 332 1.217882 ACTGACGTTTGCACTGTAGC 58.782 50.000 0.00 0.00 0.00 3.58
331 333 1.217001 CTGACGTTTGCACTGTAGCA 58.783 50.000 0.00 1.65 43.99 3.49
332 334 1.800586 CTGACGTTTGCACTGTAGCAT 59.199 47.619 0.00 0.00 45.19 3.79
333 335 2.217750 TGACGTTTGCACTGTAGCATT 58.782 42.857 0.00 0.00 45.19 3.56
334 336 2.616376 TGACGTTTGCACTGTAGCATTT 59.384 40.909 0.00 0.00 45.19 2.32
335 337 2.973224 GACGTTTGCACTGTAGCATTTG 59.027 45.455 0.00 2.78 45.19 2.32
336 338 2.287547 ACGTTTGCACTGTAGCATTTGG 60.288 45.455 5.90 1.06 45.19 3.28
337 339 2.676076 GTTTGCACTGTAGCATTTGGG 58.324 47.619 5.90 0.00 45.19 4.12
338 340 2.284754 TTGCACTGTAGCATTTGGGA 57.715 45.000 5.90 0.00 45.19 4.37
339 341 2.284754 TGCACTGTAGCATTTGGGAA 57.715 45.000 1.65 0.00 40.11 3.97
340 342 2.591923 TGCACTGTAGCATTTGGGAAA 58.408 42.857 1.65 0.00 40.11 3.13
341 343 2.961741 TGCACTGTAGCATTTGGGAAAA 59.038 40.909 1.65 0.00 40.11 2.29
342 344 3.386078 TGCACTGTAGCATTTGGGAAAAA 59.614 39.130 1.65 0.00 40.11 1.94
359 361 2.882927 AAAAGAAAAACCTCCACCGC 57.117 45.000 0.00 0.00 0.00 5.68
360 362 1.770294 AAAGAAAAACCTCCACCGCA 58.230 45.000 0.00 0.00 0.00 5.69
361 363 1.029681 AAGAAAAACCTCCACCGCAC 58.970 50.000 0.00 0.00 0.00 5.34
362 364 0.106918 AGAAAAACCTCCACCGCACA 60.107 50.000 0.00 0.00 0.00 4.57
423 425 0.663568 GAGGTGTGGAACTCGTCACG 60.664 60.000 0.00 0.00 42.70 4.35
445 447 3.626924 ACAGGTCCACCAGCGTCC 61.627 66.667 0.00 0.00 38.89 4.79
492 494 1.898574 CCACCACCAGCTCAACCAC 60.899 63.158 0.00 0.00 0.00 4.16
501 503 1.086067 AGCTCAACCACATCATCGCG 61.086 55.000 0.00 0.00 0.00 5.87
579 582 2.817844 TGAGTCATTCCTCTTCGTCGAA 59.182 45.455 7.57 7.57 32.50 3.71
606 609 2.710096 TTCTGATTAGCTTTCCGGGG 57.290 50.000 0.00 0.00 0.00 5.73
653 683 4.552166 TCCTTCTGAAAGTTCTTTTGCG 57.448 40.909 0.00 0.00 33.76 4.85
654 687 4.196193 TCCTTCTGAAAGTTCTTTTGCGA 58.804 39.130 0.00 0.00 33.76 5.10
662 695 6.738114 TGAAAGTTCTTTTGCGATCTGATTT 58.262 32.000 0.00 0.00 0.00 2.17
672 705 3.009723 GCGATCTGATTTCACCTTCCAA 58.990 45.455 0.00 0.00 0.00 3.53
698 739 2.579738 GGAGCGACCCTTGTCCTC 59.420 66.667 0.00 0.00 38.32 3.71
745 797 4.888038 CATCCTCTGCAAAAATCGATGA 57.112 40.909 0.00 0.00 0.00 2.92
788 840 0.820226 TCTCCAGATTCGAGCACAGG 59.180 55.000 0.00 0.00 0.00 4.00
789 841 0.809241 CTCCAGATTCGAGCACAGGC 60.809 60.000 0.00 0.00 41.61 4.85
900 952 3.565764 TGATCCTGGCACCTCATTTAG 57.434 47.619 0.00 0.00 0.00 1.85
905 957 2.171448 CCTGGCACCTCATTTAGCTAGT 59.829 50.000 0.00 0.00 34.28 2.57
974 1026 1.663379 TACTCATCTGGCGACCGTGG 61.663 60.000 0.00 0.00 0.00 4.94
1023 1075 2.890945 GTCCACCAACAAGCTTTACCAT 59.109 45.455 0.00 0.00 0.00 3.55
1125 1177 5.563085 GCGGTCGAATCTCATACTAGTCAAT 60.563 44.000 0.00 0.00 0.00 2.57
1224 1278 3.862267 GCGTGCTAGATGGATATGATGTC 59.138 47.826 0.00 0.00 0.00 3.06
1450 1504 1.344114 GTGGAAAAGGCAATTGCTGGA 59.656 47.619 28.42 4.79 41.70 3.86
1627 1921 0.548031 TCAAGCACCATGGGGAGATC 59.452 55.000 21.28 0.00 38.05 2.75
1785 2080 3.451141 TGTTCATTGGTTTCAACAGCC 57.549 42.857 0.00 0.00 35.48 4.85
1798 2093 1.504275 AACAGCCCATTCCTGCTCCT 61.504 55.000 0.00 0.00 35.12 3.69
1837 2132 6.938596 TCTACATTGATTCCCAATAGCATCTG 59.061 38.462 0.00 0.00 43.27 2.90
2093 2416 8.800370 TGTATTCATGTTCTGTAAATGGCTAA 57.200 30.769 0.00 0.00 0.00 3.09
2107 2430 7.552687 TGTAAATGGCTAATCAGACCTTTGTAG 59.447 37.037 0.00 0.00 31.01 2.74
2172 2495 2.921126 GCACTTATGCCGCATGATAAC 58.079 47.619 16.40 0.00 46.97 1.89
2173 2496 2.549754 GCACTTATGCCGCATGATAACT 59.450 45.455 16.40 0.00 46.97 2.24
2174 2497 3.745975 GCACTTATGCCGCATGATAACTA 59.254 43.478 16.40 0.00 46.97 2.24
2175 2498 4.377431 GCACTTATGCCGCATGATAACTAC 60.377 45.833 16.40 0.00 46.97 2.73
2176 2499 4.991056 CACTTATGCCGCATGATAACTACT 59.009 41.667 16.40 0.00 0.00 2.57
2177 2500 5.119279 CACTTATGCCGCATGATAACTACTC 59.881 44.000 16.40 0.00 0.00 2.59
2178 2501 2.526304 TGCCGCATGATAACTACTCC 57.474 50.000 0.00 0.00 0.00 3.85
2179 2502 1.070134 TGCCGCATGATAACTACTCCC 59.930 52.381 0.00 0.00 0.00 4.30
2180 2503 1.344763 GCCGCATGATAACTACTCCCT 59.655 52.381 0.00 0.00 0.00 4.20
2181 2504 2.610727 GCCGCATGATAACTACTCCCTC 60.611 54.545 0.00 0.00 0.00 4.30
2182 2505 2.028930 CCGCATGATAACTACTCCCTCC 60.029 54.545 0.00 0.00 0.00 4.30
2183 2506 2.351835 CGCATGATAACTACTCCCTCCG 60.352 54.545 0.00 0.00 0.00 4.63
2184 2507 2.628657 GCATGATAACTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
2185 2508 3.069729 GCATGATAACTACTCCCTCCGTT 59.930 47.826 0.00 0.00 0.00 4.44
2186 2509 4.796618 GCATGATAACTACTCCCTCCGTTC 60.797 50.000 0.00 0.00 0.00 3.95
2187 2510 3.294214 TGATAACTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
2188 2511 3.053095 TGATAACTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
2189 2512 4.166725 TGATAACTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
2190 2513 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2191 2514 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2192 2515 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2193 2516 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2194 2517 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2195 2518 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
2196 2519 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
2197 2520 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2198 2521 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2199 2522 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2200 2523 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
2201 2524 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
2202 2525 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
2203 2526 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2204 2527 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
2220 2543 8.940397 AAGTCCTTTTAGAGATTTCAAATGGA 57.060 30.769 0.00 9.53 34.75 3.41
2221 2544 8.341892 AGTCCTTTTAGAGATTTCAAATGGAC 57.658 34.615 21.78 21.78 46.54 4.02
2222 2545 8.341892 GTCCTTTTAGAGATTTCAAATGGACT 57.658 34.615 21.88 0.00 44.76 3.85
2223 2546 9.449719 GTCCTTTTAGAGATTTCAAATGGACTA 57.550 33.333 21.88 0.00 44.76 2.59
2224 2547 9.449719 TCCTTTTAGAGATTTCAAATGGACTAC 57.550 33.333 0.00 0.00 33.17 2.73
2225 2548 9.231297 CCTTTTAGAGATTTCAAATGGACTACA 57.769 33.333 0.00 0.00 31.44 2.74
2228 2551 9.567776 TTTAGAGATTTCAAATGGACTACAACA 57.432 29.630 0.00 0.00 0.00 3.33
2229 2552 7.678947 AGAGATTTCAAATGGACTACAACAG 57.321 36.000 0.00 0.00 0.00 3.16
2230 2553 6.656693 AGAGATTTCAAATGGACTACAACAGG 59.343 38.462 0.00 0.00 0.00 4.00
2231 2554 6.542821 AGATTTCAAATGGACTACAACAGGA 58.457 36.000 0.00 0.00 0.00 3.86
2232 2555 7.177878 AGATTTCAAATGGACTACAACAGGAT 58.822 34.615 0.00 0.00 0.00 3.24
2233 2556 6.573664 TTTCAAATGGACTACAACAGGATG 57.426 37.500 0.00 0.00 46.00 3.51
2234 2557 5.497464 TCAAATGGACTACAACAGGATGA 57.503 39.130 0.00 0.00 39.69 2.92
2235 2558 6.065976 TCAAATGGACTACAACAGGATGAT 57.934 37.500 0.00 0.00 39.69 2.45
2236 2559 5.882000 TCAAATGGACTACAACAGGATGATG 59.118 40.000 0.00 0.00 45.28 3.07
2268 2591 8.993424 AGACATATTTTAGGGTGTAGAATCACT 58.007 33.333 0.00 0.00 38.28 3.41
2269 2592 9.262358 GACATATTTTAGGGTGTAGAATCACTC 57.738 37.037 0.00 0.00 38.92 3.51
2270 2593 8.768397 ACATATTTTAGGGTGTAGAATCACTCA 58.232 33.333 0.00 0.00 40.86 3.41
2271 2594 9.784531 CATATTTTAGGGTGTAGAATCACTCAT 57.215 33.333 0.00 0.00 40.86 2.90
2274 2597 8.934023 TTTTAGGGTGTAGAATCACTCATTTT 57.066 30.769 0.00 0.00 40.86 1.82
2275 2598 7.921786 TTAGGGTGTAGAATCACTCATTTTG 57.078 36.000 0.00 0.00 40.86 2.44
2276 2599 4.702131 AGGGTGTAGAATCACTCATTTTGC 59.298 41.667 0.00 0.00 40.86 3.68
2277 2600 4.702131 GGGTGTAGAATCACTCATTTTGCT 59.298 41.667 0.00 0.00 38.54 3.91
2278 2601 5.163713 GGGTGTAGAATCACTCATTTTGCTC 60.164 44.000 0.00 0.00 38.54 4.26
2279 2602 5.163713 GGTGTAGAATCACTCATTTTGCTCC 60.164 44.000 0.00 0.00 38.28 4.70
2280 2603 4.631377 TGTAGAATCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2281 2604 3.679389 AGAATCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2282 2605 4.832248 AGAATCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2283 2606 5.431765 AGAATCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2284 2607 5.295292 AGAATCACTCATTTTGCTCCGTATG 59.705 40.000 0.00 0.00 0.00 2.39
2285 2608 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2286 2609 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2287 2610 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2288 2611 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2289 2612 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2290 2613 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2291 2614 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
2292 2615 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
2293 2616 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
2294 2617 1.754803 TGCTCCGTATGTAGTCCCTTG 59.245 52.381 0.00 0.00 0.00 3.61
2295 2618 1.755380 GCTCCGTATGTAGTCCCTTGT 59.245 52.381 0.00 0.00 0.00 3.16
2296 2619 2.167900 GCTCCGTATGTAGTCCCTTGTT 59.832 50.000 0.00 0.00 0.00 2.83
2297 2620 3.782046 CTCCGTATGTAGTCCCTTGTTG 58.218 50.000 0.00 0.00 0.00 3.33
2298 2621 3.167485 TCCGTATGTAGTCCCTTGTTGT 58.833 45.455 0.00 0.00 0.00 3.32
2299 2622 4.343231 TCCGTATGTAGTCCCTTGTTGTA 58.657 43.478 0.00 0.00 0.00 2.41
2300 2623 4.771577 TCCGTATGTAGTCCCTTGTTGTAA 59.228 41.667 0.00 0.00 0.00 2.41
2301 2624 5.422970 TCCGTATGTAGTCCCTTGTTGTAAT 59.577 40.000 0.00 0.00 0.00 1.89
2302 2625 5.751990 CCGTATGTAGTCCCTTGTTGTAATC 59.248 44.000 0.00 0.00 0.00 1.75
2303 2626 6.406624 CCGTATGTAGTCCCTTGTTGTAATCT 60.407 42.308 0.00 0.00 0.00 2.40
2304 2627 6.696148 CGTATGTAGTCCCTTGTTGTAATCTC 59.304 42.308 0.00 0.00 0.00 2.75
2305 2628 6.875972 ATGTAGTCCCTTGTTGTAATCTCT 57.124 37.500 0.00 0.00 0.00 3.10
2306 2629 7.973048 ATGTAGTCCCTTGTTGTAATCTCTA 57.027 36.000 0.00 0.00 0.00 2.43
2307 2630 7.406031 TGTAGTCCCTTGTTGTAATCTCTAG 57.594 40.000 0.00 0.00 0.00 2.43
2308 2631 7.179966 TGTAGTCCCTTGTTGTAATCTCTAGA 58.820 38.462 0.00 0.00 0.00 2.43
2309 2632 7.672660 TGTAGTCCCTTGTTGTAATCTCTAGAA 59.327 37.037 0.00 0.00 0.00 2.10
2310 2633 7.554959 AGTCCCTTGTTGTAATCTCTAGAAA 57.445 36.000 0.00 0.00 0.00 2.52
2311 2634 7.616313 AGTCCCTTGTTGTAATCTCTAGAAAG 58.384 38.462 0.00 0.00 0.00 2.62
2312 2635 7.455008 AGTCCCTTGTTGTAATCTCTAGAAAGA 59.545 37.037 0.00 0.00 0.00 2.52
2313 2636 7.546316 GTCCCTTGTTGTAATCTCTAGAAAGAC 59.454 40.741 0.00 0.00 0.00 3.01
2314 2637 7.455008 TCCCTTGTTGTAATCTCTAGAAAGACT 59.545 37.037 0.00 0.00 0.00 3.24
2315 2638 8.750298 CCCTTGTTGTAATCTCTAGAAAGACTA 58.250 37.037 0.00 0.00 0.00 2.59
2325 2648 7.792364 TCTCTAGAAAGACTAACATTTGGGA 57.208 36.000 0.00 0.00 0.00 4.37
2326 2649 8.202461 TCTCTAGAAAGACTAACATTTGGGAA 57.798 34.615 0.00 0.00 0.00 3.97
2327 2650 8.095169 TCTCTAGAAAGACTAACATTTGGGAAC 58.905 37.037 0.00 0.00 0.00 3.62
2328 2651 7.741785 TCTAGAAAGACTAACATTTGGGAACA 58.258 34.615 0.00 0.00 39.83 3.18
2329 2652 6.884280 AGAAAGACTAACATTTGGGAACAG 57.116 37.500 0.00 0.00 44.54 3.16
2330 2653 6.601332 AGAAAGACTAACATTTGGGAACAGA 58.399 36.000 0.00 0.00 44.54 3.41
2331 2654 6.712547 AGAAAGACTAACATTTGGGAACAGAG 59.287 38.462 0.00 0.00 44.54 3.35
2332 2655 4.911390 AGACTAACATTTGGGAACAGAGG 58.089 43.478 0.00 0.00 44.54 3.69
2333 2656 4.010349 GACTAACATTTGGGAACAGAGGG 58.990 47.826 0.00 0.00 44.54 4.30
2426 3180 9.988815 AGTAGGATAAGATTGCTACAGTTATTG 57.011 33.333 6.02 0.00 41.48 1.90
2429 3183 7.653713 AGGATAAGATTGCTACAGTTATTGTCG 59.346 37.037 0.00 0.00 41.29 4.35
2430 3184 7.652105 GGATAAGATTGCTACAGTTATTGTCGA 59.348 37.037 0.00 0.00 41.29 4.20
2431 3185 9.197694 GATAAGATTGCTACAGTTATTGTCGAT 57.802 33.333 0.00 0.00 41.29 3.59
2432 3186 6.834959 AGATTGCTACAGTTATTGTCGATG 57.165 37.500 0.00 0.00 41.29 3.84
2433 3187 6.573434 AGATTGCTACAGTTATTGTCGATGA 58.427 36.000 0.00 0.00 41.29 2.92
2434 3188 7.041721 AGATTGCTACAGTTATTGTCGATGAA 58.958 34.615 0.00 0.00 41.29 2.57
2435 3189 6.403333 TTGCTACAGTTATTGTCGATGAAC 57.597 37.500 0.00 0.00 41.29 3.18
2436 3190 5.474825 TGCTACAGTTATTGTCGATGAACA 58.525 37.500 0.00 0.00 41.29 3.18
2437 3191 5.347635 TGCTACAGTTATTGTCGATGAACAC 59.652 40.000 0.00 0.00 41.29 3.32
2438 3192 5.347635 GCTACAGTTATTGTCGATGAACACA 59.652 40.000 0.00 0.00 41.29 3.72
2439 3193 5.591643 ACAGTTATTGTCGATGAACACAC 57.408 39.130 0.00 0.00 33.87 3.82
2440 3194 4.149922 ACAGTTATTGTCGATGAACACACG 59.850 41.667 0.00 0.00 33.87 4.49
2441 3195 4.149922 CAGTTATTGTCGATGAACACACGT 59.850 41.667 0.00 0.00 0.00 4.49
2442 3196 4.748102 AGTTATTGTCGATGAACACACGTT 59.252 37.500 0.00 0.00 38.33 3.99
2443 3197 9.344884 ACAGTTATTGTCGATGAACACACGTTC 62.345 40.741 0.00 0.00 43.38 3.95
2455 3209 4.330944 ACACACGTTCAGTTGGATAAGA 57.669 40.909 0.00 0.00 0.00 2.10
2456 3210 4.894784 ACACACGTTCAGTTGGATAAGAT 58.105 39.130 0.00 0.00 0.00 2.40
2457 3211 5.305585 ACACACGTTCAGTTGGATAAGATT 58.694 37.500 0.00 0.00 0.00 2.40
2458 3212 5.179368 ACACACGTTCAGTTGGATAAGATTG 59.821 40.000 0.00 0.00 0.00 2.67
2459 3213 4.154195 ACACGTTCAGTTGGATAAGATTGC 59.846 41.667 0.00 0.00 0.00 3.56
2460 3214 4.393062 CACGTTCAGTTGGATAAGATTGCT 59.607 41.667 0.00 0.00 0.00 3.91
2461 3215 5.580691 CACGTTCAGTTGGATAAGATTGCTA 59.419 40.000 0.00 0.00 0.00 3.49
2462 3216 5.581085 ACGTTCAGTTGGATAAGATTGCTAC 59.419 40.000 0.00 0.00 0.00 3.58
2463 3217 5.580691 CGTTCAGTTGGATAAGATTGCTACA 59.419 40.000 0.00 0.00 0.00 2.74
2464 3218 6.237942 CGTTCAGTTGGATAAGATTGCTACAG 60.238 42.308 0.00 0.00 0.00 2.74
2465 3219 6.299805 TCAGTTGGATAAGATTGCTACAGT 57.700 37.500 0.00 0.00 0.00 3.55
2466 3220 6.711277 TCAGTTGGATAAGATTGCTACAGTT 58.289 36.000 0.00 0.00 0.00 3.16
2467 3221 7.847096 TCAGTTGGATAAGATTGCTACAGTTA 58.153 34.615 0.00 0.00 0.00 2.24
2468 3222 8.486210 TCAGTTGGATAAGATTGCTACAGTTAT 58.514 33.333 0.00 0.00 0.00 1.89
2469 3223 9.113838 CAGTTGGATAAGATTGCTACAGTTATT 57.886 33.333 0.00 0.00 0.00 1.40
2470 3224 9.113838 AGTTGGATAAGATTGCTACAGTTATTG 57.886 33.333 0.00 0.00 0.00 1.90
2471 3225 8.893727 GTTGGATAAGATTGCTACAGTTATTGT 58.106 33.333 0.00 0.00 43.96 2.71
2472 3226 8.662781 TGGATAAGATTGCTACAGTTATTGTC 57.337 34.615 0.00 0.00 41.29 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.313118 GGTATTTTTCAAACCTATTTATGCCAG 57.687 33.333 0.00 0.00 0.00 4.85
3 4 8.261522 GGGTATTTTTCAAACCTATTTATGCCA 58.738 33.333 0.00 0.00 33.59 4.92
4 5 8.482943 AGGGTATTTTTCAAACCTATTTATGCC 58.517 33.333 0.00 0.00 33.59 4.40
5 6 9.529325 GAGGGTATTTTTCAAACCTATTTATGC 57.471 33.333 0.00 0.00 33.59 3.14
11 12 9.990868 ACATTAGAGGGTATTTTTCAAACCTAT 57.009 29.630 0.00 0.00 33.59 2.57
13 14 9.816787 TTACATTAGAGGGTATTTTTCAAACCT 57.183 29.630 0.00 0.00 33.59 3.50
23 24 9.398921 AGATGAAGGATTACATTAGAGGGTATT 57.601 33.333 0.00 0.00 0.00 1.89
24 25 8.980832 AGATGAAGGATTACATTAGAGGGTAT 57.019 34.615 0.00 0.00 0.00 2.73
25 26 7.455008 GGAGATGAAGGATTACATTAGAGGGTA 59.545 40.741 0.00 0.00 0.00 3.69
26 27 6.271159 GGAGATGAAGGATTACATTAGAGGGT 59.729 42.308 0.00 0.00 0.00 4.34
27 28 6.573289 CGGAGATGAAGGATTACATTAGAGGG 60.573 46.154 0.00 0.00 0.00 4.30
28 29 6.209589 TCGGAGATGAAGGATTACATTAGAGG 59.790 42.308 0.00 0.00 0.00 3.69
29 30 7.040062 AGTCGGAGATGAAGGATTACATTAGAG 60.040 40.741 0.00 0.00 40.67 2.43
30 31 6.778069 AGTCGGAGATGAAGGATTACATTAGA 59.222 38.462 0.00 0.00 40.67 2.10
31 32 6.987386 AGTCGGAGATGAAGGATTACATTAG 58.013 40.000 0.00 0.00 40.67 1.73
32 33 6.549736 TGAGTCGGAGATGAAGGATTACATTA 59.450 38.462 0.00 0.00 40.67 1.90
33 34 5.363868 TGAGTCGGAGATGAAGGATTACATT 59.636 40.000 0.00 0.00 40.67 2.71
34 35 4.895889 TGAGTCGGAGATGAAGGATTACAT 59.104 41.667 0.00 0.00 40.67 2.29
35 36 4.278310 TGAGTCGGAGATGAAGGATTACA 58.722 43.478 0.00 0.00 40.67 2.41
36 37 4.920640 TGAGTCGGAGATGAAGGATTAC 57.079 45.455 0.00 0.00 40.67 1.89
37 38 7.597288 TTATTGAGTCGGAGATGAAGGATTA 57.403 36.000 0.00 0.00 40.67 1.75
38 39 6.485830 TTATTGAGTCGGAGATGAAGGATT 57.514 37.500 0.00 0.00 40.67 3.01
39 40 6.678568 ATTATTGAGTCGGAGATGAAGGAT 57.321 37.500 0.00 0.00 40.67 3.24
40 41 6.485830 AATTATTGAGTCGGAGATGAAGGA 57.514 37.500 0.00 0.00 40.67 3.36
41 42 6.763135 TGAAATTATTGAGTCGGAGATGAAGG 59.237 38.462 0.00 0.00 40.67 3.46
42 43 7.776933 TGAAATTATTGAGTCGGAGATGAAG 57.223 36.000 0.00 0.00 40.67 3.02
43 44 8.737168 AATGAAATTATTGAGTCGGAGATGAA 57.263 30.769 0.00 0.00 33.68 2.57
44 45 8.737168 AAATGAAATTATTGAGTCGGAGATGA 57.263 30.769 0.00 0.00 34.35 2.92
47 48 9.443323 TGTTAAATGAAATTATTGAGTCGGAGA 57.557 29.630 0.00 0.00 33.67 3.71
50 51 8.745837 GCATGTTAAATGAAATTATTGAGTCGG 58.254 33.333 0.00 0.00 33.67 4.79
51 52 9.288124 TGCATGTTAAATGAAATTATTGAGTCG 57.712 29.630 0.00 0.00 33.67 4.18
59 60 9.571810 GTGATCACTGCATGTTAAATGAAATTA 57.428 29.630 18.83 0.00 33.67 1.40
60 61 8.308931 AGTGATCACTGCATGTTAAATGAAATT 58.691 29.630 27.37 0.00 40.75 1.82
61 62 7.833786 AGTGATCACTGCATGTTAAATGAAAT 58.166 30.769 27.37 0.00 40.75 2.17
62 63 7.218228 AGTGATCACTGCATGTTAAATGAAA 57.782 32.000 27.37 0.00 40.75 2.69
63 64 6.822667 AGTGATCACTGCATGTTAAATGAA 57.177 33.333 27.37 0.00 40.75 2.57
64 65 6.207221 ACAAGTGATCACTGCATGTTAAATGA 59.793 34.615 28.52 0.00 41.58 2.57
65 66 6.384224 ACAAGTGATCACTGCATGTTAAATG 58.616 36.000 28.52 19.54 41.58 2.32
66 67 6.207221 TGACAAGTGATCACTGCATGTTAAAT 59.793 34.615 28.52 6.34 41.58 1.40
67 68 5.530543 TGACAAGTGATCACTGCATGTTAAA 59.469 36.000 28.52 14.97 41.58 1.52
68 69 5.049474 GTGACAAGTGATCACTGCATGTTAA 60.049 40.000 28.52 17.08 42.68 2.01
69 70 4.452114 GTGACAAGTGATCACTGCATGTTA 59.548 41.667 28.52 21.15 42.68 2.41
103 104 5.112129 AGGTTACTTTCACCTGTTCAAGT 57.888 39.130 0.00 0.00 43.52 3.16
104 105 4.515567 GGAGGTTACTTTCACCTGTTCAAG 59.484 45.833 0.00 0.00 45.30 3.02
105 106 4.080243 TGGAGGTTACTTTCACCTGTTCAA 60.080 41.667 0.00 0.00 45.30 2.69
106 107 3.456644 TGGAGGTTACTTTCACCTGTTCA 59.543 43.478 0.00 0.00 45.30 3.18
107 108 4.081322 TGGAGGTTACTTTCACCTGTTC 57.919 45.455 0.00 0.00 45.30 3.18
108 109 4.513406 TTGGAGGTTACTTTCACCTGTT 57.487 40.909 0.00 0.00 45.30 3.16
109 110 4.461198 CTTTGGAGGTTACTTTCACCTGT 58.539 43.478 0.00 0.00 45.30 4.00
110 111 3.821033 CCTTTGGAGGTTACTTTCACCTG 59.179 47.826 0.00 0.00 45.30 4.00
112 113 3.154710 CCCTTTGGAGGTTACTTTCACC 58.845 50.000 0.00 0.00 41.85 4.02
113 114 2.557056 GCCCTTTGGAGGTTACTTTCAC 59.443 50.000 0.00 0.00 41.85 3.18
114 115 2.175931 TGCCCTTTGGAGGTTACTTTCA 59.824 45.455 0.00 0.00 41.85 2.69
115 116 2.820197 CTGCCCTTTGGAGGTTACTTTC 59.180 50.000 0.00 0.00 41.85 2.62
116 117 2.876581 CTGCCCTTTGGAGGTTACTTT 58.123 47.619 0.00 0.00 41.85 2.66
117 118 1.547901 GCTGCCCTTTGGAGGTTACTT 60.548 52.381 0.00 0.00 41.85 2.24
118 119 0.038310 GCTGCCCTTTGGAGGTTACT 59.962 55.000 0.00 0.00 41.85 2.24
119 120 1.305930 CGCTGCCCTTTGGAGGTTAC 61.306 60.000 0.00 0.00 41.85 2.50
120 121 1.002624 CGCTGCCCTTTGGAGGTTA 60.003 57.895 0.00 0.00 41.85 2.85
121 122 2.282462 CGCTGCCCTTTGGAGGTT 60.282 61.111 0.00 0.00 41.85 3.50
136 137 3.925688 TCGAAATCACTGATTAAGCGC 57.074 42.857 0.00 0.00 31.46 5.92
157 158 2.670251 CCTGCACGGCCCGTTTAA 60.670 61.111 5.76 0.00 38.32 1.52
193 194 2.512515 GTCATGTCTGGGCGAGGC 60.513 66.667 0.00 0.00 0.00 4.70
310 312 1.597663 GCTACAGTGCAAACGTCAGTT 59.402 47.619 0.00 0.00 43.50 3.16
311 313 1.217882 GCTACAGTGCAAACGTCAGT 58.782 50.000 0.00 0.00 0.00 3.41
312 314 1.217001 TGCTACAGTGCAAACGTCAG 58.783 50.000 0.00 0.00 40.29 3.51
313 315 1.877637 ATGCTACAGTGCAAACGTCA 58.122 45.000 0.00 0.00 46.61 4.35
316 318 2.318578 CCAAATGCTACAGTGCAAACG 58.681 47.619 0.00 0.00 46.61 3.60
317 319 2.295909 TCCCAAATGCTACAGTGCAAAC 59.704 45.455 0.00 0.00 46.61 2.93
318 320 2.591923 TCCCAAATGCTACAGTGCAAA 58.408 42.857 0.00 0.00 46.61 3.68
319 321 2.284754 TCCCAAATGCTACAGTGCAA 57.715 45.000 0.00 0.00 46.61 4.08
321 323 3.658757 TTTTCCCAAATGCTACAGTGC 57.341 42.857 0.00 0.00 0.00 4.40
339 341 2.498078 TGCGGTGGAGGTTTTTCTTTTT 59.502 40.909 0.00 0.00 0.00 1.94
340 342 2.104170 TGCGGTGGAGGTTTTTCTTTT 58.896 42.857 0.00 0.00 0.00 2.27
341 343 1.407618 GTGCGGTGGAGGTTTTTCTTT 59.592 47.619 0.00 0.00 0.00 2.52
342 344 1.029681 GTGCGGTGGAGGTTTTTCTT 58.970 50.000 0.00 0.00 0.00 2.52
343 345 0.106918 TGTGCGGTGGAGGTTTTTCT 60.107 50.000 0.00 0.00 0.00 2.52
344 346 0.310854 CTGTGCGGTGGAGGTTTTTC 59.689 55.000 0.00 0.00 0.00 2.29
345 347 0.106918 TCTGTGCGGTGGAGGTTTTT 60.107 50.000 0.00 0.00 0.00 1.94
346 348 0.535102 CTCTGTGCGGTGGAGGTTTT 60.535 55.000 0.00 0.00 0.00 2.43
347 349 1.071471 CTCTGTGCGGTGGAGGTTT 59.929 57.895 0.00 0.00 0.00 3.27
348 350 2.743718 CTCTGTGCGGTGGAGGTT 59.256 61.111 0.00 0.00 0.00 3.50
349 351 4.008933 GCTCTGTGCGGTGGAGGT 62.009 66.667 0.00 0.00 0.00 3.85
350 352 4.767255 GGCTCTGTGCGGTGGAGG 62.767 72.222 0.00 0.00 44.05 4.30
351 353 3.947132 CTGGCTCTGTGCGGTGGAG 62.947 68.421 0.00 0.00 44.05 3.86
352 354 4.007644 CTGGCTCTGTGCGGTGGA 62.008 66.667 0.00 0.00 44.05 4.02
353 355 3.535629 TTCTGGCTCTGTGCGGTGG 62.536 63.158 0.00 0.00 44.05 4.61
354 356 2.031012 TTCTGGCTCTGTGCGGTG 59.969 61.111 0.00 0.00 44.05 4.94
355 357 2.031163 GTTCTGGCTCTGTGCGGT 59.969 61.111 0.00 0.00 44.05 5.68
356 358 2.743928 GGTTCTGGCTCTGTGCGG 60.744 66.667 0.00 0.00 44.05 5.69
357 359 2.743928 GGGTTCTGGCTCTGTGCG 60.744 66.667 0.00 0.00 44.05 5.34
358 360 1.376553 GAGGGTTCTGGCTCTGTGC 60.377 63.158 0.00 0.00 41.94 4.57
359 361 1.079543 CGAGGGTTCTGGCTCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
360 362 1.534235 ACGAGGGTTCTGGCTCTGT 60.534 57.895 0.00 0.00 0.00 3.41
361 363 1.079543 CACGAGGGTTCTGGCTCTG 60.080 63.158 0.00 0.00 0.00 3.35
362 364 2.948720 GCACGAGGGTTCTGGCTCT 61.949 63.158 0.00 0.00 0.00 4.09
561 564 3.927142 ACAATTCGACGAAGAGGAATGAC 59.073 43.478 16.40 0.00 34.50 3.06
613 616 5.537300 AGGATATTGTACACCTGCACTAG 57.463 43.478 0.00 0.00 0.00 2.57
653 683 4.274459 CCGATTGGAAGGTGAAATCAGATC 59.726 45.833 0.00 0.00 37.49 2.75
654 687 4.202441 CCGATTGGAAGGTGAAATCAGAT 58.798 43.478 0.00 0.00 37.49 2.90
662 695 0.036765 CGAACCCGATTGGAAGGTGA 60.037 55.000 0.00 0.00 37.49 4.02
672 705 3.834799 GGTCGCTCCGAACCCGAT 61.835 66.667 0.00 0.00 37.65 4.18
768 820 1.202394 CCTGTGCTCGAATCTGGAGAG 60.202 57.143 0.00 0.00 33.27 3.20
900 952 2.047560 AAACGACGGGCCACTAGC 60.048 61.111 4.39 0.00 42.60 3.42
922 974 1.221466 CTCTGTTTCGGCGAGCACAA 61.221 55.000 20.23 6.56 0.00 3.33
1023 1075 1.393603 CAGGCTCCGATAGAGTGACA 58.606 55.000 0.00 0.00 45.21 3.58
1125 1177 0.833409 TCTGAGCTCTGGTTGCAGGA 60.833 55.000 19.23 0.00 0.00 3.86
1224 1278 5.521735 CGAAGAGAACAGATCCATGTAAAGG 59.478 44.000 0.00 0.00 31.70 3.11
1785 2080 0.329261 TTCACCAGGAGCAGGAATGG 59.671 55.000 0.00 0.00 38.83 3.16
1798 2093 6.419484 TCAATGTAGAGAAGTCTTTCACCA 57.581 37.500 0.00 0.00 35.70 4.17
1837 2132 1.639298 GAGCAAGTCATCCGTGTGGC 61.639 60.000 0.00 0.00 34.14 5.01
2057 2377 9.507329 ACAGAACATGAATACATACTCAAAACT 57.493 29.630 0.00 0.00 35.09 2.66
2064 2387 8.840321 GCCATTTACAGAACATGAATACATACT 58.160 33.333 0.00 0.00 35.09 2.12
2093 2416 1.899814 TGCCGACTACAAAGGTCTGAT 59.100 47.619 0.00 0.00 0.00 2.90
2107 2430 1.442769 ACATGATCACTTGTGCCGAC 58.557 50.000 0.00 0.00 34.02 4.79
2171 2494 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
2172 2495 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
2173 2496 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2174 2497 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2175 2498 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
2176 2499 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
2177 2500 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
2178 2501 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
2179 2502 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
2195 2518 8.797438 GTCCATTTGAAATCTCTAAAAGGACTT 58.203 33.333 13.13 0.00 39.55 3.01
2196 2519 8.166726 AGTCCATTTGAAATCTCTAAAAGGACT 58.833 33.333 15.86 15.86 43.14 3.85
2197 2520 8.341892 AGTCCATTTGAAATCTCTAAAAGGAC 57.658 34.615 12.72 12.72 41.02 3.85
2198 2521 9.449719 GTAGTCCATTTGAAATCTCTAAAAGGA 57.550 33.333 0.00 0.00 0.00 3.36
2199 2522 9.231297 TGTAGTCCATTTGAAATCTCTAAAAGG 57.769 33.333 0.00 0.00 0.00 3.11
2202 2525 9.567776 TGTTGTAGTCCATTTGAAATCTCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
2203 2526 9.219603 CTGTTGTAGTCCATTTGAAATCTCTAA 57.780 33.333 0.00 0.00 0.00 2.10
2204 2527 7.824289 CCTGTTGTAGTCCATTTGAAATCTCTA 59.176 37.037 0.00 0.00 0.00 2.43
2205 2528 6.656693 CCTGTTGTAGTCCATTTGAAATCTCT 59.343 38.462 0.00 0.00 0.00 3.10
2206 2529 6.655003 TCCTGTTGTAGTCCATTTGAAATCTC 59.345 38.462 0.00 0.00 0.00 2.75
2207 2530 6.542821 TCCTGTTGTAGTCCATTTGAAATCT 58.457 36.000 0.00 0.00 0.00 2.40
2208 2531 6.817765 TCCTGTTGTAGTCCATTTGAAATC 57.182 37.500 0.00 0.00 0.00 2.17
2209 2532 6.947733 TCATCCTGTTGTAGTCCATTTGAAAT 59.052 34.615 0.00 0.00 0.00 2.17
2210 2533 6.303054 TCATCCTGTTGTAGTCCATTTGAAA 58.697 36.000 0.00 0.00 0.00 2.69
2211 2534 5.875224 TCATCCTGTTGTAGTCCATTTGAA 58.125 37.500 0.00 0.00 0.00 2.69
2212 2535 5.497464 TCATCCTGTTGTAGTCCATTTGA 57.503 39.130 0.00 0.00 0.00 2.69
2213 2536 5.649395 ACATCATCCTGTTGTAGTCCATTTG 59.351 40.000 0.00 0.00 29.32 2.32
2214 2537 5.819991 ACATCATCCTGTTGTAGTCCATTT 58.180 37.500 0.00 0.00 29.32 2.32
2215 2538 5.441718 ACATCATCCTGTTGTAGTCCATT 57.558 39.130 0.00 0.00 29.32 3.16
2216 2539 6.753913 ATACATCATCCTGTTGTAGTCCAT 57.246 37.500 4.83 0.00 36.39 3.41
2217 2540 7.855784 ATATACATCATCCTGTTGTAGTCCA 57.144 36.000 4.83 0.00 36.39 4.02
2218 2541 9.244292 TCTATATACATCATCCTGTTGTAGTCC 57.756 37.037 4.83 0.00 36.39 3.85
2220 2543 9.588096 TGTCTATATACATCATCCTGTTGTAGT 57.412 33.333 4.83 0.00 36.39 2.73
2242 2565 8.993424 AGTGATTCTACACCCTAAAATATGTCT 58.007 33.333 0.00 0.00 41.12 3.41
2243 2566 9.262358 GAGTGATTCTACACCCTAAAATATGTC 57.738 37.037 0.00 0.00 41.12 3.06
2244 2567 8.768397 TGAGTGATTCTACACCCTAAAATATGT 58.232 33.333 0.00 0.00 41.12 2.29
2245 2568 9.784531 ATGAGTGATTCTACACCCTAAAATATG 57.215 33.333 0.00 0.00 41.12 1.78
2248 2571 9.533831 AAAATGAGTGATTCTACACCCTAAAAT 57.466 29.630 0.00 0.00 41.12 1.82
2249 2572 8.792633 CAAAATGAGTGATTCTACACCCTAAAA 58.207 33.333 0.00 0.00 41.12 1.52
2250 2573 7.094377 GCAAAATGAGTGATTCTACACCCTAAA 60.094 37.037 0.00 0.00 41.12 1.85
2251 2574 6.374333 GCAAAATGAGTGATTCTACACCCTAA 59.626 38.462 0.00 0.00 41.12 2.69
2252 2575 5.880332 GCAAAATGAGTGATTCTACACCCTA 59.120 40.000 0.00 0.00 41.12 3.53
2253 2576 4.702131 GCAAAATGAGTGATTCTACACCCT 59.298 41.667 0.00 0.00 41.12 4.34
2254 2577 4.702131 AGCAAAATGAGTGATTCTACACCC 59.298 41.667 0.00 0.00 41.12 4.61
2255 2578 5.163713 GGAGCAAAATGAGTGATTCTACACC 60.164 44.000 0.00 0.00 41.12 4.16
2256 2579 5.446473 CGGAGCAAAATGAGTGATTCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2257 2580 4.631377 CGGAGCAAAATGAGTGATTCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2258 2581 4.631813 ACGGAGCAAAATGAGTGATTCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2259 2582 4.832248 ACGGAGCAAAATGAGTGATTCTA 58.168 39.130 0.00 0.00 0.00 2.10
2260 2583 3.679389 ACGGAGCAAAATGAGTGATTCT 58.321 40.909 0.00 0.00 0.00 2.40
2261 2584 5.065218 ACATACGGAGCAAAATGAGTGATTC 59.935 40.000 0.00 0.00 0.00 2.52
2262 2585 4.943705 ACATACGGAGCAAAATGAGTGATT 59.056 37.500 0.00 0.00 0.00 2.57
2263 2586 4.517285 ACATACGGAGCAAAATGAGTGAT 58.483 39.130 0.00 0.00 0.00 3.06
2264 2587 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2265 2588 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2266 2589 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2267 2590 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2268 2591 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2269 2592 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
2270 2593 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
2271 2594 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
2272 2595 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
2273 2596 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
2274 2597 1.754803 CAAGGGACTACATACGGAGCA 59.245 52.381 0.00 0.00 38.49 4.26
2275 2598 1.755380 ACAAGGGACTACATACGGAGC 59.245 52.381 0.00 0.00 38.49 4.70
2276 2599 3.194968 ACAACAAGGGACTACATACGGAG 59.805 47.826 0.00 0.00 38.49 4.63
2277 2600 3.167485 ACAACAAGGGACTACATACGGA 58.833 45.455 0.00 0.00 38.49 4.69
2278 2601 3.604875 ACAACAAGGGACTACATACGG 57.395 47.619 0.00 0.00 38.49 4.02
2279 2602 6.570692 AGATTACAACAAGGGACTACATACG 58.429 40.000 0.00 0.00 38.49 3.06
2280 2603 7.783042 AGAGATTACAACAAGGGACTACATAC 58.217 38.462 0.00 0.00 38.49 2.39
2281 2604 7.973048 AGAGATTACAACAAGGGACTACATA 57.027 36.000 0.00 0.00 38.49 2.29
2282 2605 6.875972 AGAGATTACAACAAGGGACTACAT 57.124 37.500 0.00 0.00 38.49 2.29
2283 2606 7.179966 TCTAGAGATTACAACAAGGGACTACA 58.820 38.462 0.00 0.00 38.49 2.74
2284 2607 7.642082 TCTAGAGATTACAACAAGGGACTAC 57.358 40.000 0.00 0.00 38.49 2.73
2285 2608 8.660295 TTTCTAGAGATTACAACAAGGGACTA 57.340 34.615 0.00 0.00 38.49 2.59
2287 2610 7.546316 GTCTTTCTAGAGATTACAACAAGGGAC 59.454 40.741 0.00 0.00 0.00 4.46
2288 2611 7.455008 AGTCTTTCTAGAGATTACAACAAGGGA 59.545 37.037 0.00 0.00 0.00 4.20
2289 2612 7.616313 AGTCTTTCTAGAGATTACAACAAGGG 58.384 38.462 0.00 0.00 0.00 3.95
2299 2622 8.826765 TCCCAAATGTTAGTCTTTCTAGAGATT 58.173 33.333 0.00 0.00 0.00 2.40
2300 2623 8.380742 TCCCAAATGTTAGTCTTTCTAGAGAT 57.619 34.615 0.00 0.00 0.00 2.75
2301 2624 7.792364 TCCCAAATGTTAGTCTTTCTAGAGA 57.208 36.000 0.00 0.00 0.00 3.10
2302 2625 7.878127 TGTTCCCAAATGTTAGTCTTTCTAGAG 59.122 37.037 0.00 0.00 0.00 2.43
2303 2626 7.741785 TGTTCCCAAATGTTAGTCTTTCTAGA 58.258 34.615 0.00 0.00 0.00 2.43
2304 2627 7.878127 TCTGTTCCCAAATGTTAGTCTTTCTAG 59.122 37.037 0.00 0.00 0.00 2.43
2305 2628 7.741785 TCTGTTCCCAAATGTTAGTCTTTCTA 58.258 34.615 0.00 0.00 0.00 2.10
2306 2629 6.601332 TCTGTTCCCAAATGTTAGTCTTTCT 58.399 36.000 0.00 0.00 0.00 2.52
2307 2630 6.072452 CCTCTGTTCCCAAATGTTAGTCTTTC 60.072 42.308 0.00 0.00 0.00 2.62
2308 2631 5.770162 CCTCTGTTCCCAAATGTTAGTCTTT 59.230 40.000 0.00 0.00 0.00 2.52
2309 2632 5.316987 CCTCTGTTCCCAAATGTTAGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
2310 2633 4.263506 CCCTCTGTTCCCAAATGTTAGTCT 60.264 45.833 0.00 0.00 0.00 3.24
2311 2634 4.010349 CCCTCTGTTCCCAAATGTTAGTC 58.990 47.826 0.00 0.00 0.00 2.59
2312 2635 3.655777 TCCCTCTGTTCCCAAATGTTAGT 59.344 43.478 0.00 0.00 0.00 2.24
2313 2636 4.263506 ACTCCCTCTGTTCCCAAATGTTAG 60.264 45.833 0.00 0.00 0.00 2.34
2314 2637 3.655777 ACTCCCTCTGTTCCCAAATGTTA 59.344 43.478 0.00 0.00 0.00 2.41
2315 2638 2.447047 ACTCCCTCTGTTCCCAAATGTT 59.553 45.455 0.00 0.00 0.00 2.71
2316 2639 2.065799 ACTCCCTCTGTTCCCAAATGT 58.934 47.619 0.00 0.00 0.00 2.71
2317 2640 2.887151 ACTCCCTCTGTTCCCAAATG 57.113 50.000 0.00 0.00 0.00 2.32
2318 2641 6.217693 ACTTAATACTCCCTCTGTTCCCAAAT 59.782 38.462 0.00 0.00 0.00 2.32
2319 2642 5.550403 ACTTAATACTCCCTCTGTTCCCAAA 59.450 40.000 0.00 0.00 0.00 3.28
2320 2643 5.098663 ACTTAATACTCCCTCTGTTCCCAA 58.901 41.667 0.00 0.00 0.00 4.12
2321 2644 4.695606 ACTTAATACTCCCTCTGTTCCCA 58.304 43.478 0.00 0.00 0.00 4.37
2322 2645 6.803366 TTACTTAATACTCCCTCTGTTCCC 57.197 41.667 0.00 0.00 0.00 3.97
2323 2646 7.217906 CCATTACTTAATACTCCCTCTGTTCC 58.782 42.308 0.00 0.00 0.00 3.62
2324 2647 6.706716 GCCATTACTTAATACTCCCTCTGTTC 59.293 42.308 0.00 0.00 0.00 3.18
2325 2648 6.387220 AGCCATTACTTAATACTCCCTCTGTT 59.613 38.462 0.00 0.00 0.00 3.16
2326 2649 5.905913 AGCCATTACTTAATACTCCCTCTGT 59.094 40.000 0.00 0.00 0.00 3.41
2327 2650 6.426646 AGCCATTACTTAATACTCCCTCTG 57.573 41.667 0.00 0.00 0.00 3.35
2328 2651 7.073854 TGTAGCCATTACTTAATACTCCCTCT 58.926 38.462 0.00 0.00 33.23 3.69
2329 2652 7.299246 TGTAGCCATTACTTAATACTCCCTC 57.701 40.000 0.00 0.00 33.23 4.30
2330 2653 7.685849 TTGTAGCCATTACTTAATACTCCCT 57.314 36.000 0.00 0.00 33.23 4.20
2331 2654 8.919777 AATTGTAGCCATTACTTAATACTCCC 57.080 34.615 0.00 0.00 33.23 4.30
2433 3187 4.699637 TCTTATCCAACTGAACGTGTGTT 58.300 39.130 0.00 0.00 42.23 3.32
2434 3188 4.330944 TCTTATCCAACTGAACGTGTGT 57.669 40.909 0.00 0.00 0.00 3.72
2435 3189 5.621422 CAATCTTATCCAACTGAACGTGTG 58.379 41.667 0.00 0.00 0.00 3.82
2436 3190 4.154195 GCAATCTTATCCAACTGAACGTGT 59.846 41.667 0.00 0.00 0.00 4.49
2437 3191 4.393062 AGCAATCTTATCCAACTGAACGTG 59.607 41.667 0.00 0.00 0.00 4.49
2438 3192 4.579869 AGCAATCTTATCCAACTGAACGT 58.420 39.130 0.00 0.00 0.00 3.99
2439 3193 5.580691 TGTAGCAATCTTATCCAACTGAACG 59.419 40.000 0.00 0.00 0.00 3.95
2440 3194 6.595716 ACTGTAGCAATCTTATCCAACTGAAC 59.404 38.462 0.00 0.00 0.00 3.18
2441 3195 6.711277 ACTGTAGCAATCTTATCCAACTGAA 58.289 36.000 0.00 0.00 0.00 3.02
2442 3196 6.299805 ACTGTAGCAATCTTATCCAACTGA 57.700 37.500 0.00 0.00 0.00 3.41
2443 3197 6.992063 AACTGTAGCAATCTTATCCAACTG 57.008 37.500 0.00 0.00 0.00 3.16
2444 3198 9.113838 CAATAACTGTAGCAATCTTATCCAACT 57.886 33.333 0.00 0.00 0.00 3.16
2445 3199 8.893727 ACAATAACTGTAGCAATCTTATCCAAC 58.106 33.333 0.00 0.00 36.10 3.77
2446 3200 9.109393 GACAATAACTGTAGCAATCTTATCCAA 57.891 33.333 0.00 0.00 38.84 3.53
2447 3201 7.438160 CGACAATAACTGTAGCAATCTTATCCA 59.562 37.037 0.00 0.00 38.84 3.41
2448 3202 7.652105 TCGACAATAACTGTAGCAATCTTATCC 59.348 37.037 0.00 0.00 38.84 2.59
2449 3203 8.575565 TCGACAATAACTGTAGCAATCTTATC 57.424 34.615 0.00 0.00 38.84 1.75
2450 3204 7.653713 CCTCGACAATAACTGTAGCAATCTTAT 59.346 37.037 0.00 0.00 38.84 1.73
2451 3205 6.978659 CCTCGACAATAACTGTAGCAATCTTA 59.021 38.462 0.00 0.00 38.84 2.10
2452 3206 5.812642 CCTCGACAATAACTGTAGCAATCTT 59.187 40.000 0.00 0.00 38.84 2.40
2453 3207 5.127194 TCCTCGACAATAACTGTAGCAATCT 59.873 40.000 0.00 0.00 38.84 2.40
2454 3208 5.348986 TCCTCGACAATAACTGTAGCAATC 58.651 41.667 0.00 0.00 38.84 2.67
2455 3209 5.339008 TCCTCGACAATAACTGTAGCAAT 57.661 39.130 0.00 0.00 38.84 3.56
2456 3210 4.794278 TCCTCGACAATAACTGTAGCAA 57.206 40.909 0.00 0.00 38.84 3.91
2457 3211 4.021807 TGTTCCTCGACAATAACTGTAGCA 60.022 41.667 0.00 0.00 38.84 3.49
2458 3212 4.326548 GTGTTCCTCGACAATAACTGTAGC 59.673 45.833 0.00 0.00 38.84 3.58
2459 3213 5.345202 GTGTGTTCCTCGACAATAACTGTAG 59.655 44.000 0.00 0.00 38.84 2.74
2460 3214 5.010314 AGTGTGTTCCTCGACAATAACTGTA 59.990 40.000 0.00 0.00 38.84 2.74
2461 3215 4.056050 GTGTGTTCCTCGACAATAACTGT 58.944 43.478 0.00 0.00 42.61 3.55
2462 3216 4.307432 AGTGTGTTCCTCGACAATAACTG 58.693 43.478 0.00 0.00 0.00 3.16
2463 3217 4.602340 AGTGTGTTCCTCGACAATAACT 57.398 40.909 0.00 0.00 0.00 2.24
2464 3218 6.347160 GGTTAAGTGTGTTCCTCGACAATAAC 60.347 42.308 0.00 0.00 31.81 1.89
2465 3219 5.697633 GGTTAAGTGTGTTCCTCGACAATAA 59.302 40.000 0.00 0.00 0.00 1.40
2466 3220 5.232463 GGTTAAGTGTGTTCCTCGACAATA 58.768 41.667 0.00 0.00 0.00 1.90
2467 3221 4.062991 GGTTAAGTGTGTTCCTCGACAAT 58.937 43.478 0.00 0.00 0.00 2.71
2468 3222 3.460103 GGTTAAGTGTGTTCCTCGACAA 58.540 45.455 0.00 0.00 0.00 3.18
2469 3223 2.544277 CGGTTAAGTGTGTTCCTCGACA 60.544 50.000 0.00 0.00 0.00 4.35
2470 3224 2.056577 CGGTTAAGTGTGTTCCTCGAC 58.943 52.381 0.00 0.00 0.00 4.20
2471 3225 1.955778 TCGGTTAAGTGTGTTCCTCGA 59.044 47.619 0.00 0.00 0.00 4.04
2472 3226 2.427232 TCGGTTAAGTGTGTTCCTCG 57.573 50.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.