Multiple sequence alignment - TraesCS3D01G132200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G132200 chr3D 100.000 2624 0 0 1 2624 91834364 91831741 0.000000e+00 4846.0
1 TraesCS3D01G132200 chr3D 92.611 1854 82 17 601 2441 92264527 92262716 0.000000e+00 2614.0
2 TraesCS3D01G132200 chr3D 88.497 1617 162 17 863 2474 91802910 91801313 0.000000e+00 1934.0
3 TraesCS3D01G132200 chr3D 87.240 1732 162 29 750 2455 92125484 92123786 0.000000e+00 1919.0
4 TraesCS3D01G132200 chr3D 88.575 1593 138 23 887 2474 92360216 92358663 0.000000e+00 1893.0
5 TraesCS3D01G132200 chr3D 88.517 897 84 12 1580 2474 92217228 92216349 0.000000e+00 1068.0
6 TraesCS3D01G132200 chr3D 88.876 854 61 14 750 1585 92224146 92223309 0.000000e+00 1020.0
7 TraesCS3D01G132200 chr3D 86.316 190 5 15 411 581 92264768 92264581 1.240000e-43 187.0
8 TraesCS3D01G132200 chr3D 100.000 35 0 0 2440 2474 92262554 92262520 6.060000e-07 65.8
9 TraesCS3D01G132200 chr3D 97.436 39 0 1 371 409 92264825 92264788 6.060000e-07 65.8
10 TraesCS3D01G132200 chr3B 88.249 1753 167 23 750 2474 141815963 141814222 0.000000e+00 2060.0
11 TraesCS3D01G132200 chr3B 89.308 1590 143 18 887 2474 141864529 141862965 0.000000e+00 1969.0
12 TraesCS3D01G132200 chr3B 87.814 1313 130 18 750 2036 141752743 141751435 0.000000e+00 1511.0
13 TraesCS3D01G132200 chr3B 85.169 445 58 6 2034 2474 141746089 141745649 1.430000e-122 449.0
14 TraesCS3D01G132200 chr3A 87.866 1706 170 23 750 2451 545358822 545357150 0.000000e+00 1969.0
15 TraesCS3D01G132200 chr3A 86.385 1300 133 21 750 2020 545892435 545891151 0.000000e+00 1380.0
16 TraesCS3D01G132200 chr3A 95.417 240 8 2 764 1003 545372519 545372283 1.910000e-101 379.0
17 TraesCS3D01G132200 chr3A 90.244 123 12 0 601 723 545372636 545372514 7.520000e-36 161.0
18 TraesCS3D01G132200 chr3A 93.443 61 3 1 514 574 545372762 545372703 3.600000e-14 89.8
19 TraesCS3D01G132200 chr6A 94.444 162 6 3 2466 2624 514037310 514037471 2.020000e-61 246.0
20 TraesCS3D01G132200 chr6A 92.169 166 10 2 2459 2624 182315190 182315028 5.650000e-57 231.0
21 TraesCS3D01G132200 chr5A 96.622 148 5 0 2477 2624 566177993 566178140 2.020000e-61 246.0
22 TraesCS3D01G132200 chr7A 96.000 150 6 0 2475 2624 578444491 578444640 7.250000e-61 244.0
23 TraesCS3D01G132200 chr7A 95.333 150 7 0 2475 2624 527996559 527996708 3.380000e-59 239.0
24 TraesCS3D01G132200 chr5D 95.302 149 6 1 2476 2624 333119771 333119918 4.370000e-58 235.0
25 TraesCS3D01G132200 chr5D 79.310 145 23 6 23 163 3760147 3760288 7.730000e-16 95.3
26 TraesCS3D01G132200 chr4A 93.210 162 8 2 2463 2624 112854397 112854555 4.370000e-58 235.0
27 TraesCS3D01G132200 chr4A 100.000 29 0 0 23 51 647103194 647103222 1.000000e-03 54.7
28 TraesCS3D01G132200 chr2D 93.125 160 9 2 2467 2624 229706872 229707031 1.570000e-57 233.0
29 TraesCS3D01G132200 chr6D 94.079 152 8 1 2473 2624 253351583 253351433 2.030000e-56 230.0
30 TraesCS3D01G132200 chr6D 84.071 113 13 3 23 134 264168425 264168533 1.280000e-18 104.0
31 TraesCS3D01G132200 chr6D 82.353 102 7 8 32 127 35327204 35327108 7.790000e-11 78.7
32 TraesCS3D01G132200 chr6D 94.444 36 2 0 18 53 47022735 47022770 3.650000e-04 56.5
33 TraesCS3D01G132200 chr4D 88.312 77 4 4 158 233 295415679 295415607 1.290000e-13 87.9
34 TraesCS3D01G132200 chr4B 88.158 76 6 2 158 233 364350085 364350157 1.290000e-13 87.9
35 TraesCS3D01G132200 chr6B 85.542 83 9 2 23 105 689028911 689028990 1.670000e-12 84.2
36 TraesCS3D01G132200 chr1B 94.737 38 2 0 26 63 439828089 439828126 2.820000e-05 60.2
37 TraesCS3D01G132200 chr1D 85.455 55 6 1 100 154 387557198 387557146 3.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G132200 chr3D 91831741 91834364 2623 True 4846.00 4846 100.00000 1 2624 1 chr3D.!!$R2 2623
1 TraesCS3D01G132200 chr3D 91801313 91802910 1597 True 1934.00 1934 88.49700 863 2474 1 chr3D.!!$R1 1611
2 TraesCS3D01G132200 chr3D 92123786 92125484 1698 True 1919.00 1919 87.24000 750 2455 1 chr3D.!!$R3 1705
3 TraesCS3D01G132200 chr3D 92358663 92360216 1553 True 1893.00 1893 88.57500 887 2474 1 chr3D.!!$R6 1587
4 TraesCS3D01G132200 chr3D 92216349 92217228 879 True 1068.00 1068 88.51700 1580 2474 1 chr3D.!!$R4 894
5 TraesCS3D01G132200 chr3D 92223309 92224146 837 True 1020.00 1020 88.87600 750 1585 1 chr3D.!!$R5 835
6 TraesCS3D01G132200 chr3D 92262520 92264825 2305 True 733.15 2614 94.09075 371 2474 4 chr3D.!!$R7 2103
7 TraesCS3D01G132200 chr3B 141814222 141815963 1741 True 2060.00 2060 88.24900 750 2474 1 chr3B.!!$R3 1724
8 TraesCS3D01G132200 chr3B 141862965 141864529 1564 True 1969.00 1969 89.30800 887 2474 1 chr3B.!!$R4 1587
9 TraesCS3D01G132200 chr3B 141751435 141752743 1308 True 1511.00 1511 87.81400 750 2036 1 chr3B.!!$R2 1286
10 TraesCS3D01G132200 chr3A 545357150 545358822 1672 True 1969.00 1969 87.86600 750 2451 1 chr3A.!!$R1 1701
11 TraesCS3D01G132200 chr3A 545891151 545892435 1284 True 1380.00 1380 86.38500 750 2020 1 chr3A.!!$R2 1270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.179189 GCGGTGCGAGAAATCCAAAG 60.179 55.0 0.0 0.0 0.0 2.77 F
588 625 0.248661 TCGCACGAATCTGCTAGAGC 60.249 55.0 0.0 0.0 42.5 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1644 0.320421 GCACGCCCTCTTCAGTGTAA 60.320 55.000 0.00 0.0 36.99 2.41 R
2483 2878 2.882137 TGCAAACTAAAAAGGACCGGAG 59.118 45.455 9.46 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.906065 TTCACATGAGGCATAGATTTGC 57.094 40.909 0.00 0.00 42.01 3.68
37 38 4.160642 TCACATGAGGCATAGATTTGCT 57.839 40.909 0.00 0.00 42.38 3.91
38 39 4.529897 TCACATGAGGCATAGATTTGCTT 58.470 39.130 0.00 0.00 42.38 3.91
39 40 4.577693 TCACATGAGGCATAGATTTGCTTC 59.422 41.667 0.00 2.03 45.88 3.86
40 41 4.579340 CACATGAGGCATAGATTTGCTTCT 59.421 41.667 0.00 0.00 45.87 2.85
41 42 4.820716 ACATGAGGCATAGATTTGCTTCTC 59.179 41.667 0.00 3.68 45.87 2.87
42 43 4.492494 TGAGGCATAGATTTGCTTCTCA 57.508 40.909 9.48 5.89 45.87 3.27
43 44 5.045012 TGAGGCATAGATTTGCTTCTCAT 57.955 39.130 9.48 0.00 45.87 2.90
44 45 4.820173 TGAGGCATAGATTTGCTTCTCATG 59.180 41.667 9.48 0.00 45.87 3.07
45 46 4.142790 AGGCATAGATTTGCTTCTCATGG 58.857 43.478 0.00 0.00 42.38 3.66
46 47 4.139786 GGCATAGATTTGCTTCTCATGGA 58.860 43.478 0.00 0.00 42.38 3.41
47 48 4.215827 GGCATAGATTTGCTTCTCATGGAG 59.784 45.833 0.00 0.00 42.38 3.86
48 49 4.215827 GCATAGATTTGCTTCTCATGGAGG 59.784 45.833 0.00 0.00 39.57 4.30
49 50 2.652590 AGATTTGCTTCTCATGGAGGC 58.347 47.619 10.15 10.15 45.68 4.70
55 56 3.137446 GCTTCTCATGGAGGCATATGT 57.863 47.619 4.29 0.00 44.96 2.29
56 57 3.484407 GCTTCTCATGGAGGCATATGTT 58.516 45.455 4.29 0.00 44.96 2.71
57 58 3.887716 GCTTCTCATGGAGGCATATGTTT 59.112 43.478 4.29 0.00 44.96 2.83
58 59 4.261489 GCTTCTCATGGAGGCATATGTTTG 60.261 45.833 4.29 0.00 44.96 2.93
59 60 3.216800 TCTCATGGAGGCATATGTTTGC 58.783 45.455 4.29 0.00 42.01 3.68
60 61 3.117776 TCTCATGGAGGCATATGTTTGCT 60.118 43.478 4.29 0.00 42.38 3.91
61 62 3.634504 TCATGGAGGCATATGTTTGCTT 58.365 40.909 4.29 0.00 42.38 3.91
62 63 3.633525 TCATGGAGGCATATGTTTGCTTC 59.366 43.478 4.29 0.00 45.20 3.86
63 64 3.370840 TGGAGGCATATGTTTGCTTCT 57.629 42.857 4.29 0.00 45.24 2.85
64 65 4.502105 TGGAGGCATATGTTTGCTTCTA 57.498 40.909 4.29 0.16 45.24 2.10
65 66 4.454678 TGGAGGCATATGTTTGCTTCTAG 58.545 43.478 4.29 0.00 45.24 2.43
66 67 3.817647 GGAGGCATATGTTTGCTTCTAGG 59.182 47.826 4.29 0.00 45.24 3.02
67 68 4.444876 GGAGGCATATGTTTGCTTCTAGGA 60.445 45.833 4.29 0.00 45.24 2.94
68 69 4.712476 AGGCATATGTTTGCTTCTAGGAG 58.288 43.478 4.29 0.00 42.38 3.69
69 70 4.410228 AGGCATATGTTTGCTTCTAGGAGA 59.590 41.667 0.77 0.00 42.38 3.71
70 71 4.754114 GGCATATGTTTGCTTCTAGGAGAG 59.246 45.833 0.77 0.00 42.38 3.20
71 72 4.754114 GCATATGTTTGCTTCTAGGAGAGG 59.246 45.833 0.77 0.00 39.57 3.69
72 73 2.770164 TGTTTGCTTCTAGGAGAGGC 57.230 50.000 0.77 3.79 46.21 4.70
77 78 2.017138 GCTTCTAGGAGAGGCACAAC 57.983 55.000 0.77 0.00 45.45 3.32
78 79 1.276421 GCTTCTAGGAGAGGCACAACA 59.724 52.381 0.77 0.00 45.45 3.33
79 80 2.289694 GCTTCTAGGAGAGGCACAACAA 60.290 50.000 0.77 0.00 45.45 2.83
80 81 3.330267 CTTCTAGGAGAGGCACAACAAC 58.670 50.000 0.00 0.00 0.00 3.32
81 82 2.609747 TCTAGGAGAGGCACAACAACT 58.390 47.619 0.00 0.00 0.00 3.16
82 83 2.300152 TCTAGGAGAGGCACAACAACTG 59.700 50.000 0.00 0.00 0.00 3.16
83 84 0.839946 AGGAGAGGCACAACAACTGT 59.160 50.000 0.00 0.00 39.56 3.55
91 92 2.992089 ACAACAACTGTGCCTCTCG 58.008 52.632 0.00 0.00 36.69 4.04
92 93 0.532862 ACAACAACTGTGCCTCTCGG 60.533 55.000 0.00 0.00 36.69 4.63
93 94 0.249868 CAACAACTGTGCCTCTCGGA 60.250 55.000 0.00 0.00 0.00 4.55
94 95 0.468226 AACAACTGTGCCTCTCGGAA 59.532 50.000 0.00 0.00 0.00 4.30
95 96 0.468226 ACAACTGTGCCTCTCGGAAA 59.532 50.000 0.00 0.00 0.00 3.13
96 97 1.151668 CAACTGTGCCTCTCGGAAAG 58.848 55.000 0.00 0.00 0.00 2.62
97 98 1.048601 AACTGTGCCTCTCGGAAAGA 58.951 50.000 0.00 0.00 0.00 2.52
134 135 6.582677 TTTTTCTTCCACAAGAGACACAAA 57.417 33.333 0.00 0.00 39.90 2.83
135 136 6.773976 TTTTCTTCCACAAGAGACACAAAT 57.226 33.333 0.00 0.00 39.90 2.32
136 137 6.773976 TTTCTTCCACAAGAGACACAAATT 57.226 33.333 0.00 0.00 39.90 1.82
137 138 6.773976 TTCTTCCACAAGAGACACAAATTT 57.226 33.333 0.00 0.00 39.90 1.82
138 139 6.135290 TCTTCCACAAGAGACACAAATTTG 57.865 37.500 16.67 16.67 33.38 2.32
139 140 4.305989 TCCACAAGAGACACAAATTTGC 57.694 40.909 18.12 2.19 0.00 3.68
140 141 3.953612 TCCACAAGAGACACAAATTTGCT 59.046 39.130 18.12 7.27 0.00 3.91
141 142 4.402155 TCCACAAGAGACACAAATTTGCTT 59.598 37.500 18.12 9.72 0.00 3.91
142 143 4.741676 CCACAAGAGACACAAATTTGCTTC 59.258 41.667 18.12 13.72 0.00 3.86
143 144 5.450965 CCACAAGAGACACAAATTTGCTTCT 60.451 40.000 18.12 17.93 0.00 2.85
144 145 5.684626 CACAAGAGACACAAATTTGCTTCTC 59.315 40.000 27.32 27.32 38.62 2.87
145 146 5.357878 ACAAGAGACACAAATTTGCTTCTCA 59.642 36.000 31.69 0.00 39.80 3.27
146 147 6.040166 ACAAGAGACACAAATTTGCTTCTCAT 59.960 34.615 31.69 24.50 39.80 2.90
147 148 7.229306 ACAAGAGACACAAATTTGCTTCTCATA 59.771 33.333 31.69 0.00 39.80 2.15
148 149 7.750229 AGAGACACAAATTTGCTTCTCATAA 57.250 32.000 31.69 0.00 39.80 1.90
149 150 8.169977 AGAGACACAAATTTGCTTCTCATAAA 57.830 30.769 31.69 0.00 39.80 1.40
150 151 8.632679 AGAGACACAAATTTGCTTCTCATAAAA 58.367 29.630 31.69 0.00 39.80 1.52
151 152 8.807667 AGACACAAATTTGCTTCTCATAAAAG 57.192 30.769 18.12 0.00 0.00 2.27
162 163 7.158243 GCTTCTCATAAAAGCATAATTGTGC 57.842 36.000 18.52 18.52 46.63 4.57
163 164 6.199719 GCTTCTCATAAAAGCATAATTGTGCC 59.800 38.462 21.90 6.10 46.63 5.01
164 165 7.408756 TTCTCATAAAAGCATAATTGTGCCT 57.591 32.000 21.90 8.02 46.19 4.75
165 166 7.031226 TCTCATAAAAGCATAATTGTGCCTC 57.969 36.000 21.90 0.00 46.19 4.70
166 167 6.830324 TCTCATAAAAGCATAATTGTGCCTCT 59.170 34.615 21.90 9.98 46.19 3.69
167 168 7.012704 TCTCATAAAAGCATAATTGTGCCTCTC 59.987 37.037 21.90 0.00 46.19 3.20
168 169 4.361451 AAAAGCATAATTGTGCCTCTCG 57.639 40.909 21.90 0.00 46.19 4.04
169 170 1.959042 AGCATAATTGTGCCTCTCGG 58.041 50.000 21.90 0.00 46.19 4.63
170 171 1.486310 AGCATAATTGTGCCTCTCGGA 59.514 47.619 21.90 0.00 46.19 4.55
171 172 2.092968 AGCATAATTGTGCCTCTCGGAA 60.093 45.455 21.90 0.00 46.19 4.30
172 173 2.682856 GCATAATTGTGCCTCTCGGAAA 59.317 45.455 15.69 0.00 39.18 3.13
173 174 3.128589 GCATAATTGTGCCTCTCGGAAAA 59.871 43.478 15.69 0.00 39.18 2.29
174 175 4.731773 GCATAATTGTGCCTCTCGGAAAAG 60.732 45.833 15.69 0.00 39.18 2.27
175 176 1.826385 ATTGTGCCTCTCGGAAAAGG 58.174 50.000 2.46 2.46 35.65 3.11
176 177 0.250727 TTGTGCCTCTCGGAAAAGGG 60.251 55.000 7.88 0.00 32.98 3.95
177 178 1.125093 TGTGCCTCTCGGAAAAGGGA 61.125 55.000 7.88 2.91 32.98 4.20
178 179 0.391793 GTGCCTCTCGGAAAAGGGAG 60.392 60.000 7.88 0.00 38.44 4.30
183 184 3.418684 CTCTCGGAAAAGGGAGGAAAA 57.581 47.619 0.00 0.00 35.15 2.29
184 185 3.339141 CTCTCGGAAAAGGGAGGAAAAG 58.661 50.000 0.00 0.00 35.15 2.27
185 186 2.709397 TCTCGGAAAAGGGAGGAAAAGT 59.291 45.455 0.00 0.00 0.00 2.66
186 187 2.814336 CTCGGAAAAGGGAGGAAAAGTG 59.186 50.000 0.00 0.00 0.00 3.16
187 188 2.440253 TCGGAAAAGGGAGGAAAAGTGA 59.560 45.455 0.00 0.00 0.00 3.41
188 189 3.117813 TCGGAAAAGGGAGGAAAAGTGAA 60.118 43.478 0.00 0.00 0.00 3.18
189 190 3.634910 CGGAAAAGGGAGGAAAAGTGAAA 59.365 43.478 0.00 0.00 0.00 2.69
190 191 4.098807 CGGAAAAGGGAGGAAAAGTGAAAA 59.901 41.667 0.00 0.00 0.00 2.29
191 192 5.221441 CGGAAAAGGGAGGAAAAGTGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
192 193 6.015772 CGGAAAAGGGAGGAAAAGTGAAAATA 60.016 38.462 0.00 0.00 0.00 1.40
193 194 7.470841 CGGAAAAGGGAGGAAAAGTGAAAATAA 60.471 37.037 0.00 0.00 0.00 1.40
194 195 8.208224 GGAAAAGGGAGGAAAAGTGAAAATAAA 58.792 33.333 0.00 0.00 0.00 1.40
195 196 9.607988 GAAAAGGGAGGAAAAGTGAAAATAAAA 57.392 29.630 0.00 0.00 0.00 1.52
197 198 9.778741 AAAGGGAGGAAAAGTGAAAATAAAATC 57.221 29.630 0.00 0.00 0.00 2.17
198 199 8.491045 AGGGAGGAAAAGTGAAAATAAAATCA 57.509 30.769 0.00 0.00 0.00 2.57
199 200 9.104713 AGGGAGGAAAAGTGAAAATAAAATCAT 57.895 29.630 0.00 0.00 0.00 2.45
200 201 9.154847 GGGAGGAAAAGTGAAAATAAAATCATG 57.845 33.333 0.00 0.00 0.00 3.07
201 202 8.659491 GGAGGAAAAGTGAAAATAAAATCATGC 58.341 33.333 0.00 0.00 0.00 4.06
202 203 9.428097 GAGGAAAAGTGAAAATAAAATCATGCT 57.572 29.630 0.00 0.00 0.00 3.79
203 204 9.783081 AGGAAAAGTGAAAATAAAATCATGCTT 57.217 25.926 0.00 0.00 0.00 3.91
206 207 7.816945 AAGTGAAAATAAAATCATGCTTCCG 57.183 32.000 0.00 0.00 0.00 4.30
207 208 6.332630 AGTGAAAATAAAATCATGCTTCCGG 58.667 36.000 0.00 0.00 0.00 5.14
208 209 6.071391 AGTGAAAATAAAATCATGCTTCCGGT 60.071 34.615 0.00 0.00 0.00 5.28
209 210 6.589907 GTGAAAATAAAATCATGCTTCCGGTT 59.410 34.615 0.00 0.00 0.00 4.44
210 211 6.811170 TGAAAATAAAATCATGCTTCCGGTTC 59.189 34.615 0.00 0.00 0.00 3.62
211 212 2.919666 AAAATCATGCTTCCGGTTCG 57.080 45.000 0.00 0.00 0.00 3.95
224 225 3.263602 CCGGTTCGGTTTTCTTTCTTC 57.736 47.619 0.00 0.00 42.73 2.87
225 226 2.031420 CCGGTTCGGTTTTCTTTCTTCC 60.031 50.000 0.00 0.00 42.73 3.46
226 227 2.614983 CGGTTCGGTTTTCTTTCTTCCA 59.385 45.455 0.00 0.00 0.00 3.53
227 228 3.252458 CGGTTCGGTTTTCTTTCTTCCAT 59.748 43.478 0.00 0.00 0.00 3.41
228 229 4.261447 CGGTTCGGTTTTCTTTCTTCCATT 60.261 41.667 0.00 0.00 0.00 3.16
229 230 5.597806 GGTTCGGTTTTCTTTCTTCCATTT 58.402 37.500 0.00 0.00 0.00 2.32
230 231 6.046593 GGTTCGGTTTTCTTTCTTCCATTTT 58.953 36.000 0.00 0.00 0.00 1.82
231 232 6.537301 GGTTCGGTTTTCTTTCTTCCATTTTT 59.463 34.615 0.00 0.00 0.00 1.94
259 260 3.814991 TTTTTGTGCGGTGCGAGA 58.185 50.000 0.00 0.00 0.00 4.04
260 261 2.099143 TTTTTGTGCGGTGCGAGAA 58.901 47.368 0.00 0.00 0.00 2.87
261 262 0.452184 TTTTTGTGCGGTGCGAGAAA 59.548 45.000 0.00 0.00 0.00 2.52
262 263 0.665835 TTTTGTGCGGTGCGAGAAAT 59.334 45.000 0.00 0.00 0.00 2.17
263 264 0.237235 TTTGTGCGGTGCGAGAAATC 59.763 50.000 0.00 0.00 0.00 2.17
264 265 1.573829 TTGTGCGGTGCGAGAAATCC 61.574 55.000 0.00 0.00 0.00 3.01
265 266 2.032634 GTGCGGTGCGAGAAATCCA 61.033 57.895 0.00 0.00 0.00 3.41
266 267 1.302112 TGCGGTGCGAGAAATCCAA 60.302 52.632 0.00 0.00 0.00 3.53
267 268 0.886938 TGCGGTGCGAGAAATCCAAA 60.887 50.000 0.00 0.00 0.00 3.28
268 269 0.179189 GCGGTGCGAGAAATCCAAAG 60.179 55.000 0.00 0.00 0.00 2.77
269 270 1.156736 CGGTGCGAGAAATCCAAAGT 58.843 50.000 0.00 0.00 0.00 2.66
270 271 1.135972 CGGTGCGAGAAATCCAAAGTG 60.136 52.381 0.00 0.00 0.00 3.16
271 272 2.151202 GGTGCGAGAAATCCAAAGTGA 58.849 47.619 0.00 0.00 0.00 3.41
272 273 2.552315 GGTGCGAGAAATCCAAAGTGAA 59.448 45.455 0.00 0.00 0.00 3.18
273 274 3.004315 GGTGCGAGAAATCCAAAGTGAAA 59.996 43.478 0.00 0.00 0.00 2.69
274 275 4.499019 GGTGCGAGAAATCCAAAGTGAAAA 60.499 41.667 0.00 0.00 0.00 2.29
275 276 4.441087 GTGCGAGAAATCCAAAGTGAAAAC 59.559 41.667 0.00 0.00 0.00 2.43
276 277 3.664025 GCGAGAAATCCAAAGTGAAAACG 59.336 43.478 0.00 0.00 0.00 3.60
277 278 4.219033 CGAGAAATCCAAAGTGAAAACGG 58.781 43.478 0.00 0.00 0.00 4.44
278 279 4.261031 CGAGAAATCCAAAGTGAAAACGGT 60.261 41.667 0.00 0.00 0.00 4.83
279 280 5.588240 GAGAAATCCAAAGTGAAAACGGTT 58.412 37.500 0.00 0.00 0.00 4.44
280 281 5.972935 AGAAATCCAAAGTGAAAACGGTTT 58.027 33.333 0.00 0.00 0.00 3.27
281 282 5.810074 AGAAATCCAAAGTGAAAACGGTTTG 59.190 36.000 1.45 0.00 0.00 2.93
282 283 2.882324 TCCAAAGTGAAAACGGTTTGC 58.118 42.857 1.45 5.69 0.00 3.68
283 284 1.586123 CCAAAGTGAAAACGGTTTGCG 59.414 47.619 1.45 0.00 0.00 4.85
284 285 2.520979 CAAAGTGAAAACGGTTTGCGA 58.479 42.857 1.45 0.00 0.00 5.10
285 286 3.112580 CAAAGTGAAAACGGTTTGCGAT 58.887 40.909 1.45 0.00 0.00 4.58
286 287 3.430333 AAGTGAAAACGGTTTGCGATT 57.570 38.095 1.45 1.32 0.00 3.34
287 288 3.430333 AGTGAAAACGGTTTGCGATTT 57.570 38.095 1.45 0.00 0.00 2.17
288 289 3.112580 AGTGAAAACGGTTTGCGATTTG 58.887 40.909 1.45 0.00 0.00 2.32
289 290 3.109619 GTGAAAACGGTTTGCGATTTGA 58.890 40.909 1.45 0.00 0.00 2.69
290 291 3.548268 GTGAAAACGGTTTGCGATTTGAA 59.452 39.130 1.45 0.00 0.00 2.69
291 292 3.548268 TGAAAACGGTTTGCGATTTGAAC 59.452 39.130 1.45 0.00 0.00 3.18
292 293 1.749153 AACGGTTTGCGATTTGAACG 58.251 45.000 0.00 0.00 0.00 3.95
303 304 4.956139 CGATTTGAACGCACGATTTAAG 57.044 40.909 0.00 0.00 0.00 1.85
304 305 4.634000 CGATTTGAACGCACGATTTAAGA 58.366 39.130 0.00 0.00 0.00 2.10
305 306 4.719164 CGATTTGAACGCACGATTTAAGAG 59.281 41.667 0.00 0.00 0.00 2.85
306 307 4.398549 TTTGAACGCACGATTTAAGAGG 57.601 40.909 0.00 0.00 0.00 3.69
307 308 3.034721 TGAACGCACGATTTAAGAGGT 57.965 42.857 0.00 0.00 0.00 3.85
308 309 4.177165 TGAACGCACGATTTAAGAGGTA 57.823 40.909 0.00 0.00 0.00 3.08
309 310 4.558178 TGAACGCACGATTTAAGAGGTAA 58.442 39.130 0.00 0.00 0.00 2.85
310 311 4.624024 TGAACGCACGATTTAAGAGGTAAG 59.376 41.667 0.00 0.00 0.00 2.34
311 312 4.445452 ACGCACGATTTAAGAGGTAAGA 57.555 40.909 0.00 0.00 0.00 2.10
312 313 4.171754 ACGCACGATTTAAGAGGTAAGAC 58.828 43.478 0.00 0.00 0.00 3.01
313 314 4.171005 CGCACGATTTAAGAGGTAAGACA 58.829 43.478 0.00 0.00 0.00 3.41
314 315 4.804139 CGCACGATTTAAGAGGTAAGACAT 59.196 41.667 0.00 0.00 0.00 3.06
315 316 5.291128 CGCACGATTTAAGAGGTAAGACATT 59.709 40.000 0.00 0.00 0.00 2.71
316 317 6.183360 CGCACGATTTAAGAGGTAAGACATTT 60.183 38.462 0.00 0.00 0.00 2.32
317 318 7.180748 GCACGATTTAAGAGGTAAGACATTTC 58.819 38.462 0.00 0.00 0.00 2.17
318 319 7.148474 GCACGATTTAAGAGGTAAGACATTTCA 60.148 37.037 0.00 0.00 0.00 2.69
319 320 8.717821 CACGATTTAAGAGGTAAGACATTTCAA 58.282 33.333 0.00 0.00 0.00 2.69
320 321 9.449719 ACGATTTAAGAGGTAAGACATTTCAAT 57.550 29.630 0.00 0.00 0.00 2.57
328 329 9.965902 AGAGGTAAGACATTTCAATAATTGAGT 57.034 29.630 0.00 0.00 41.38 3.41
330 331 9.965902 AGGTAAGACATTTCAATAATTGAGTCT 57.034 29.630 0.00 0.00 41.58 3.24
409 410 7.663081 AGTGATCACTTGTCACAATCTTAACAT 59.337 33.333 22.89 0.00 46.46 2.71
445 464 4.092821 CACCGCTTAATCAGTGATTTCGAA 59.907 41.667 22.90 10.90 34.56 3.71
505 536 1.673665 CCAGAGGGCACAACTGCTC 60.674 63.158 7.52 0.00 45.38 4.26
549 586 2.311124 GGCCACCTATATGCCGTATC 57.689 55.000 0.00 0.00 35.08 2.24
582 619 4.725758 GTGTTCGCACGAATCTGC 57.274 55.556 8.91 0.00 38.46 4.26
583 620 2.153913 GTGTTCGCACGAATCTGCT 58.846 52.632 8.91 0.00 38.46 4.24
584 621 1.346365 GTGTTCGCACGAATCTGCTA 58.654 50.000 8.91 0.00 38.46 3.49
587 624 1.849219 GTTCGCACGAATCTGCTAGAG 59.151 52.381 8.91 0.00 36.45 2.43
588 625 0.248661 TCGCACGAATCTGCTAGAGC 60.249 55.000 0.00 0.00 42.50 4.09
660 731 0.387929 GAGGTGTGGAACTCGTCACA 59.612 55.000 0.00 0.00 42.70 3.58
671 742 2.049526 CGTCACAGCGCACAGGTA 60.050 61.111 11.47 0.00 0.00 3.08
682 753 1.365999 CACAGGTACACCAGCGTCA 59.634 57.895 0.38 0.00 38.89 4.35
729 800 1.075482 CCACCACCAGCTCAACCAT 59.925 57.895 0.00 0.00 0.00 3.55
738 809 2.549563 CCAGCTCAACCATATCATCGCT 60.550 50.000 0.00 0.00 0.00 4.93
743 814 0.667487 AACCATATCATCGCTCGCGG 60.667 55.000 6.13 0.00 40.25 6.46
746 817 3.649277 ATATCATCGCTCGCGGCCC 62.649 63.158 6.13 0.00 40.25 5.80
806 891 2.995283 TCATTCCTCTCCGTCGAGTTA 58.005 47.619 0.00 0.00 37.40 2.24
837 923 4.474651 TGATTAGCTTTCTGGGAGGATTCA 59.525 41.667 0.00 0.00 0.00 2.57
860 974 2.094182 AGGTTATGAGTGCAGGTGTACG 60.094 50.000 0.00 0.00 35.74 3.67
876 990 6.015350 CAGGTGTACGATATTTCTCTGGGTAT 60.015 42.308 0.00 0.00 0.00 2.73
949 1127 2.050350 CGGAGCGACCCTTGTCCTA 61.050 63.158 0.00 0.00 38.32 2.94
1010 1208 4.082571 CCTGCAAAAATCGATGGAGAAAGT 60.083 41.667 6.81 0.00 37.19 2.66
1029 1227 3.274288 AGTTTCTGCTTCCGATGATTCC 58.726 45.455 0.00 0.00 0.00 3.01
1032 1230 0.471617 CTGCTTCCGATGATTCCCCT 59.528 55.000 0.00 0.00 0.00 4.79
1033 1231 0.918983 TGCTTCCGATGATTCCCCTT 59.081 50.000 0.00 0.00 0.00 3.95
1101 1299 2.630158 CTCCAGATCTTTGGCACTCTG 58.370 52.381 0.00 8.01 38.16 3.35
1104 1302 3.278668 CAGATCTTTGGCACTCTGGAT 57.721 47.619 0.00 0.00 33.15 3.41
1110 1308 0.758734 TTGGCACTCTGGATATCCCG 59.241 55.000 19.34 13.06 37.93 5.14
1125 1323 0.260230 TCCCGGATCTCTTCAGCTCT 59.740 55.000 0.73 0.00 0.00 4.09
1134 1332 2.031012 TTCAGCTCTGGTGCGGTG 59.969 61.111 0.00 0.00 38.13 4.94
1171 1369 1.140852 TCATTTATCTGGAGGCCCGTG 59.859 52.381 0.00 0.00 34.29 4.94
1224 1422 3.560025 CCTGCCTTGTTTACTCATCTGGT 60.560 47.826 0.00 0.00 0.00 4.00
1266 1464 1.635487 ACCCTGCATAACATGTCCACT 59.365 47.619 0.00 0.00 0.00 4.00
1293 1491 3.762288 AGCTTTACCACGTCACTCTATCA 59.238 43.478 0.00 0.00 0.00 2.15
1446 1644 3.436704 CCATGAACAATGTTAGACTGCGT 59.563 43.478 0.00 0.00 34.11 5.24
1568 1766 2.620779 GAAGCCCGCTTCTTCTTTTC 57.379 50.000 19.77 0.00 46.38 2.29
1722 1920 7.256286 GCAATTGCTGGGAATATCAAGATATC 58.744 38.462 23.21 0.00 38.21 1.63
1829 2027 6.920210 GCTGAAGTGAAAGTTATTTTGAAGCT 59.080 34.615 0.00 0.00 0.00 3.74
1940 2138 5.452078 AATGCGAATGGAAAAAGAGAACA 57.548 34.783 0.00 0.00 0.00 3.18
2264 2468 6.173339 GGATTCAACCATCACTTACTTGAGA 58.827 40.000 0.00 0.00 0.00 3.27
2486 2881 8.871125 TCTTAGAATATTTCATGTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
2487 2882 6.102897 AGAATATTTCATGTACTCCCTCCG 57.897 41.667 0.00 0.00 0.00 4.63
2488 2883 4.891992 ATATTTCATGTACTCCCTCCGG 57.108 45.455 0.00 0.00 0.00 5.14
2489 2884 1.946984 TTTCATGTACTCCCTCCGGT 58.053 50.000 0.00 0.00 0.00 5.28
2490 2885 1.481871 TTCATGTACTCCCTCCGGTC 58.518 55.000 0.00 0.00 0.00 4.79
2491 2886 0.396695 TCATGTACTCCCTCCGGTCC 60.397 60.000 0.00 0.00 0.00 4.46
2492 2887 0.397254 CATGTACTCCCTCCGGTCCT 60.397 60.000 0.00 0.00 0.00 3.85
2493 2888 0.338814 ATGTACTCCCTCCGGTCCTT 59.661 55.000 0.00 0.00 0.00 3.36
2494 2889 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
2495 2890 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
2496 2891 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2497 2892 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2498 2893 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
2499 2894 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
2500 2895 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
2501 2896 2.712627 TCCCTCCGGTCCTTTTTAGTTT 59.287 45.455 0.00 0.00 0.00 2.66
2502 2897 2.817844 CCCTCCGGTCCTTTTTAGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
2503 2898 2.228103 CCTCCGGTCCTTTTTAGTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
2504 2899 2.882137 CTCCGGTCCTTTTTAGTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
2505 2900 3.492337 TCCGGTCCTTTTTAGTTTGCAT 58.508 40.909 0.00 0.00 0.00 3.96
2506 2901 4.653868 TCCGGTCCTTTTTAGTTTGCATA 58.346 39.130 0.00 0.00 0.00 3.14
2507 2902 5.258051 TCCGGTCCTTTTTAGTTTGCATAT 58.742 37.500 0.00 0.00 0.00 1.78
2508 2903 6.416415 TCCGGTCCTTTTTAGTTTGCATATA 58.584 36.000 0.00 0.00 0.00 0.86
2509 2904 6.885376 TCCGGTCCTTTTTAGTTTGCATATAA 59.115 34.615 0.00 0.00 0.00 0.98
2510 2905 7.066525 TCCGGTCCTTTTTAGTTTGCATATAAG 59.933 37.037 0.00 0.00 0.00 1.73
2511 2906 7.066525 CCGGTCCTTTTTAGTTTGCATATAAGA 59.933 37.037 0.00 0.00 0.00 2.10
2512 2907 8.621286 CGGTCCTTTTTAGTTTGCATATAAGAT 58.379 33.333 0.00 0.00 0.00 2.40
2539 2934 6.746745 TTTGAAGTCAAACCTCGTAAACTT 57.253 33.333 2.32 0.00 40.55 2.66
2540 2935 6.746745 TTGAAGTCAAACCTCGTAAACTTT 57.253 33.333 0.00 0.00 32.11 2.66
2541 2936 6.114221 TGAAGTCAAACCTCGTAAACTTTG 57.886 37.500 0.00 0.00 0.00 2.77
2542 2937 5.875910 TGAAGTCAAACCTCGTAAACTTTGA 59.124 36.000 0.00 0.00 31.68 2.69
2543 2938 5.729974 AGTCAAACCTCGTAAACTTTGAC 57.270 39.130 12.19 12.19 46.84 3.18
2544 2939 4.840911 GTCAAACCTCGTAAACTTTGACC 58.159 43.478 9.86 0.00 43.35 4.02
2545 2940 4.333372 GTCAAACCTCGTAAACTTTGACCA 59.667 41.667 9.86 0.00 43.35 4.02
2546 2941 4.942483 TCAAACCTCGTAAACTTTGACCAA 59.058 37.500 0.00 0.00 29.66 3.67
2547 2942 5.065474 TCAAACCTCGTAAACTTTGACCAAG 59.935 40.000 0.00 0.00 38.64 3.61
2581 2976 6.627395 AAAATACCAACATTCAGAACGTGA 57.373 33.333 0.00 0.00 0.00 4.35
2592 2987 5.553290 TTCAGAACGTGAAATCAACAACA 57.447 34.783 0.00 0.00 42.49 3.33
2593 2988 5.749596 TCAGAACGTGAAATCAACAACAT 57.250 34.783 0.00 0.00 29.64 2.71
2594 2989 6.130298 TCAGAACGTGAAATCAACAACATT 57.870 33.333 0.00 0.00 29.64 2.71
2595 2990 7.252965 TCAGAACGTGAAATCAACAACATTA 57.747 32.000 0.00 0.00 29.64 1.90
2596 2991 7.351981 TCAGAACGTGAAATCAACAACATTAG 58.648 34.615 0.00 0.00 29.64 1.73
2597 2992 7.225734 TCAGAACGTGAAATCAACAACATTAGA 59.774 33.333 0.00 0.00 29.64 2.10
2598 2993 8.017373 CAGAACGTGAAATCAACAACATTAGAT 58.983 33.333 0.00 0.00 0.00 1.98
2599 2994 8.017373 AGAACGTGAAATCAACAACATTAGATG 58.983 33.333 0.00 0.00 0.00 2.90
2600 2995 6.086222 ACGTGAAATCAACAACATTAGATGC 58.914 36.000 0.00 0.00 0.00 3.91
2601 2996 5.225743 CGTGAAATCAACAACATTAGATGCG 59.774 40.000 0.00 0.00 0.00 4.73
2602 2997 6.086222 GTGAAATCAACAACATTAGATGCGT 58.914 36.000 0.00 0.00 0.00 5.24
2603 2998 6.249260 GTGAAATCAACAACATTAGATGCGTC 59.751 38.462 0.00 0.00 0.00 5.19
2604 2999 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
2605 3000 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
2606 3001 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
2607 3002 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
2608 3003 4.864916 ACAACATTAGATGCGTCATGAC 57.135 40.909 16.21 16.21 0.00 3.06
2609 3004 4.507710 ACAACATTAGATGCGTCATGACT 58.492 39.130 22.95 4.97 0.00 3.41
2610 3005 4.937620 ACAACATTAGATGCGTCATGACTT 59.062 37.500 22.95 8.27 0.00 3.01
2611 3006 5.412594 ACAACATTAGATGCGTCATGACTTT 59.587 36.000 22.95 7.92 0.00 2.66
2612 3007 6.593770 ACAACATTAGATGCGTCATGACTTTA 59.406 34.615 22.95 9.76 0.00 1.85
2613 3008 6.589830 ACATTAGATGCGTCATGACTTTAC 57.410 37.500 22.95 11.91 0.00 2.01
2614 3009 6.106003 ACATTAGATGCGTCATGACTTTACA 58.894 36.000 22.95 15.36 0.00 2.41
2615 3010 6.763135 ACATTAGATGCGTCATGACTTTACAT 59.237 34.615 22.95 18.85 0.00 2.29
2616 3011 7.280876 ACATTAGATGCGTCATGACTTTACATT 59.719 33.333 22.95 12.91 0.00 2.71
2617 3012 7.609760 TTAGATGCGTCATGACTTTACATTT 57.390 32.000 22.95 16.54 0.00 2.32
2618 3013 6.111768 AGATGCGTCATGACTTTACATTTC 57.888 37.500 22.95 10.95 0.00 2.17
2619 3014 5.643348 AGATGCGTCATGACTTTACATTTCA 59.357 36.000 22.95 7.45 0.00 2.69
2620 3015 5.878332 TGCGTCATGACTTTACATTTCAT 57.122 34.783 22.95 0.00 0.00 2.57
2621 3016 6.976636 TGCGTCATGACTTTACATTTCATA 57.023 33.333 22.95 0.00 0.00 2.15
2622 3017 7.552458 TGCGTCATGACTTTACATTTCATAT 57.448 32.000 22.95 0.00 0.00 1.78
2623 3018 7.984391 TGCGTCATGACTTTACATTTCATATT 58.016 30.769 22.95 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.101332 GCAAATCTATGCCTCATGTGAAAAA 58.899 36.000 0.00 0.00 40.49 1.94
13 14 5.653507 GCAAATCTATGCCTCATGTGAAAA 58.346 37.500 0.00 0.00 40.49 2.29
14 15 5.252969 GCAAATCTATGCCTCATGTGAAA 57.747 39.130 0.00 0.00 40.49 2.69
15 16 4.906065 GCAAATCTATGCCTCATGTGAA 57.094 40.909 0.00 0.00 40.49 3.18
17 18 8.863704 ATGAGAAGCAAATCTATGCCTCATGTG 61.864 40.741 15.47 0.00 45.42 3.21
18 19 6.915961 ATGAGAAGCAAATCTATGCCTCATGT 60.916 38.462 15.47 0.56 45.42 3.21
19 20 5.473846 ATGAGAAGCAAATCTATGCCTCATG 59.526 40.000 15.47 0.00 45.42 3.07
20 21 5.473846 CATGAGAAGCAAATCTATGCCTCAT 59.526 40.000 12.32 12.32 46.76 2.90
25 26 4.215827 CCTCCATGAGAAGCAAATCTATGC 59.784 45.833 0.00 0.00 46.78 3.14
26 27 4.215827 GCCTCCATGAGAAGCAAATCTATG 59.784 45.833 0.00 0.00 0.00 2.23
27 28 4.141321 TGCCTCCATGAGAAGCAAATCTAT 60.141 41.667 0.00 0.00 0.00 1.98
28 29 3.200605 TGCCTCCATGAGAAGCAAATCTA 59.799 43.478 0.00 0.00 0.00 1.98
29 30 2.025605 TGCCTCCATGAGAAGCAAATCT 60.026 45.455 0.00 0.00 0.00 2.40
30 31 2.372264 TGCCTCCATGAGAAGCAAATC 58.628 47.619 0.00 0.00 0.00 2.17
31 32 2.519771 TGCCTCCATGAGAAGCAAAT 57.480 45.000 0.00 0.00 0.00 2.32
32 33 2.519771 ATGCCTCCATGAGAAGCAAA 57.480 45.000 10.31 0.00 32.52 3.68
33 34 3.117776 ACATATGCCTCCATGAGAAGCAA 60.118 43.478 1.58 3.40 32.52 3.91
34 35 2.440627 ACATATGCCTCCATGAGAAGCA 59.559 45.455 1.58 9.11 33.08 3.91
35 36 3.137446 ACATATGCCTCCATGAGAAGC 57.863 47.619 1.58 0.00 32.85 3.86
36 37 4.261489 GCAAACATATGCCTCCATGAGAAG 60.261 45.833 1.58 0.00 40.49 2.85
37 38 3.633525 GCAAACATATGCCTCCATGAGAA 59.366 43.478 1.58 0.00 40.49 2.87
38 39 3.216800 GCAAACATATGCCTCCATGAGA 58.783 45.455 1.58 0.00 40.49 3.27
39 40 3.637998 GCAAACATATGCCTCCATGAG 57.362 47.619 1.58 0.00 40.49 2.90
48 49 4.754114 CCTCTCCTAGAAGCAAACATATGC 59.246 45.833 1.58 0.00 46.78 3.14
49 50 4.754114 GCCTCTCCTAGAAGCAAACATATG 59.246 45.833 0.00 0.00 32.10 1.78
50 51 4.410228 TGCCTCTCCTAGAAGCAAACATAT 59.590 41.667 0.00 0.00 38.61 1.78
51 52 3.774766 TGCCTCTCCTAGAAGCAAACATA 59.225 43.478 0.00 0.00 38.61 2.29
52 53 2.573462 TGCCTCTCCTAGAAGCAAACAT 59.427 45.455 0.00 0.00 38.61 2.71
53 54 1.977854 TGCCTCTCCTAGAAGCAAACA 59.022 47.619 0.00 0.00 38.61 2.83
54 55 2.289694 TGTGCCTCTCCTAGAAGCAAAC 60.290 50.000 1.93 0.00 42.67 2.93
55 56 1.977854 TGTGCCTCTCCTAGAAGCAAA 59.022 47.619 1.93 0.00 42.67 3.68
56 57 1.644509 TGTGCCTCTCCTAGAAGCAA 58.355 50.000 1.93 0.00 42.67 3.91
57 58 1.276421 GTTGTGCCTCTCCTAGAAGCA 59.724 52.381 0.00 0.00 39.20 3.91
58 59 1.276421 TGTTGTGCCTCTCCTAGAAGC 59.724 52.381 0.00 0.00 32.42 3.86
59 60 3.007398 AGTTGTTGTGCCTCTCCTAGAAG 59.993 47.826 0.00 0.00 0.00 2.85
60 61 2.972713 AGTTGTTGTGCCTCTCCTAGAA 59.027 45.455 0.00 0.00 0.00 2.10
61 62 2.300152 CAGTTGTTGTGCCTCTCCTAGA 59.700 50.000 0.00 0.00 0.00 2.43
62 63 2.037772 ACAGTTGTTGTGCCTCTCCTAG 59.962 50.000 0.00 0.00 38.99 3.02
63 64 2.047061 ACAGTTGTTGTGCCTCTCCTA 58.953 47.619 0.00 0.00 38.99 2.94
64 65 0.839946 ACAGTTGTTGTGCCTCTCCT 59.160 50.000 0.00 0.00 38.99 3.69
65 66 3.403936 ACAGTTGTTGTGCCTCTCC 57.596 52.632 0.00 0.00 38.99 3.71
73 74 2.992089 CGAGAGGCACAGTTGTTGT 58.008 52.632 0.00 0.00 41.94 3.32
111 112 6.582677 TTTGTGTCTCTTGTGGAAGAAAAA 57.417 33.333 0.00 0.00 37.77 1.94
112 113 6.773976 ATTTGTGTCTCTTGTGGAAGAAAA 57.226 33.333 0.00 0.00 37.77 2.29
113 114 6.773976 AATTTGTGTCTCTTGTGGAAGAAA 57.226 33.333 0.00 0.00 37.77 2.52
114 115 6.563422 CAAATTTGTGTCTCTTGTGGAAGAA 58.437 36.000 10.15 0.00 37.77 2.52
115 116 5.450412 GCAAATTTGTGTCTCTTGTGGAAGA 60.450 40.000 19.03 0.00 36.72 2.87
116 117 4.741676 GCAAATTTGTGTCTCTTGTGGAAG 59.258 41.667 19.03 0.00 0.00 3.46
117 118 4.402155 AGCAAATTTGTGTCTCTTGTGGAA 59.598 37.500 19.03 0.00 0.00 3.53
118 119 3.953612 AGCAAATTTGTGTCTCTTGTGGA 59.046 39.130 19.03 0.00 0.00 4.02
119 120 4.311816 AGCAAATTTGTGTCTCTTGTGG 57.688 40.909 19.03 0.00 0.00 4.17
120 121 5.585390 AGAAGCAAATTTGTGTCTCTTGTG 58.415 37.500 19.03 0.00 0.00 3.33
121 122 5.357878 TGAGAAGCAAATTTGTGTCTCTTGT 59.642 36.000 31.39 20.76 39.18 3.16
122 123 5.824429 TGAGAAGCAAATTTGTGTCTCTTG 58.176 37.500 31.39 8.52 39.18 3.02
123 124 6.645790 ATGAGAAGCAAATTTGTGTCTCTT 57.354 33.333 31.39 26.89 39.18 2.85
124 125 7.750229 TTATGAGAAGCAAATTTGTGTCTCT 57.250 32.000 31.39 24.40 39.18 3.10
125 126 8.801715 TTTTATGAGAAGCAAATTTGTGTCTC 57.198 30.769 28.45 28.45 39.04 3.36
126 127 7.383300 GCTTTTATGAGAAGCAAATTTGTGTCT 59.617 33.333 19.03 19.30 46.67 3.41
127 128 7.504818 GCTTTTATGAGAAGCAAATTTGTGTC 58.495 34.615 19.03 15.43 46.67 3.67
128 129 7.412137 GCTTTTATGAGAAGCAAATTTGTGT 57.588 32.000 19.03 7.66 46.67 3.72
139 140 7.486647 AGGCACAATTATGCTTTTATGAGAAG 58.513 34.615 8.88 0.00 45.38 2.85
140 141 7.340232 AGAGGCACAATTATGCTTTTATGAGAA 59.660 33.333 8.88 0.00 45.38 2.87
141 142 6.830324 AGAGGCACAATTATGCTTTTATGAGA 59.170 34.615 8.88 0.00 45.38 3.27
142 143 7.035840 AGAGGCACAATTATGCTTTTATGAG 57.964 36.000 8.88 0.00 45.38 2.90
143 144 6.238456 CGAGAGGCACAATTATGCTTTTATGA 60.238 38.462 8.88 0.00 45.38 2.15
144 145 5.911280 CGAGAGGCACAATTATGCTTTTATG 59.089 40.000 8.88 0.00 45.38 1.90
145 146 6.064846 CGAGAGGCACAATTATGCTTTTAT 57.935 37.500 8.88 0.00 45.38 1.40
146 147 5.484173 CGAGAGGCACAATTATGCTTTTA 57.516 39.130 8.88 0.00 45.38 1.52
147 148 4.361451 CGAGAGGCACAATTATGCTTTT 57.639 40.909 8.88 0.00 45.38 2.27
163 164 3.244596 ACTTTTCCTCCCTTTTCCGAGAG 60.245 47.826 0.00 0.00 0.00 3.20
164 165 2.709397 ACTTTTCCTCCCTTTTCCGAGA 59.291 45.455 0.00 0.00 0.00 4.04
165 166 2.814336 CACTTTTCCTCCCTTTTCCGAG 59.186 50.000 0.00 0.00 0.00 4.63
166 167 2.440253 TCACTTTTCCTCCCTTTTCCGA 59.560 45.455 0.00 0.00 0.00 4.55
167 168 2.858745 TCACTTTTCCTCCCTTTTCCG 58.141 47.619 0.00 0.00 0.00 4.30
168 169 5.607939 TTTTCACTTTTCCTCCCTTTTCC 57.392 39.130 0.00 0.00 0.00 3.13
169 170 9.607988 TTTTATTTTCACTTTTCCTCCCTTTTC 57.392 29.630 0.00 0.00 0.00 2.29
171 172 9.778741 GATTTTATTTTCACTTTTCCTCCCTTT 57.221 29.630 0.00 0.00 0.00 3.11
172 173 8.933653 TGATTTTATTTTCACTTTTCCTCCCTT 58.066 29.630 0.00 0.00 0.00 3.95
173 174 8.491045 TGATTTTATTTTCACTTTTCCTCCCT 57.509 30.769 0.00 0.00 0.00 4.20
174 175 9.154847 CATGATTTTATTTTCACTTTTCCTCCC 57.845 33.333 0.00 0.00 0.00 4.30
175 176 8.659491 GCATGATTTTATTTTCACTTTTCCTCC 58.341 33.333 0.00 0.00 0.00 4.30
176 177 9.428097 AGCATGATTTTATTTTCACTTTTCCTC 57.572 29.630 0.00 0.00 0.00 3.71
177 178 9.783081 AAGCATGATTTTATTTTCACTTTTCCT 57.217 25.926 0.00 0.00 0.00 3.36
180 181 8.711457 CGGAAGCATGATTTTATTTTCACTTTT 58.289 29.630 0.00 0.00 0.00 2.27
181 182 7.331687 CCGGAAGCATGATTTTATTTTCACTTT 59.668 33.333 0.00 0.00 0.00 2.66
182 183 6.813152 CCGGAAGCATGATTTTATTTTCACTT 59.187 34.615 0.00 0.00 0.00 3.16
183 184 6.071391 ACCGGAAGCATGATTTTATTTTCACT 60.071 34.615 9.46 0.00 0.00 3.41
184 185 6.099341 ACCGGAAGCATGATTTTATTTTCAC 58.901 36.000 9.46 0.00 0.00 3.18
185 186 6.279513 ACCGGAAGCATGATTTTATTTTCA 57.720 33.333 9.46 0.00 0.00 2.69
186 187 6.020678 CGAACCGGAAGCATGATTTTATTTTC 60.021 38.462 9.46 0.00 0.00 2.29
187 188 5.804979 CGAACCGGAAGCATGATTTTATTTT 59.195 36.000 9.46 0.00 0.00 1.82
188 189 5.339990 CGAACCGGAAGCATGATTTTATTT 58.660 37.500 9.46 0.00 0.00 1.40
189 190 4.920376 CGAACCGGAAGCATGATTTTATT 58.080 39.130 9.46 0.00 0.00 1.40
190 191 4.552166 CGAACCGGAAGCATGATTTTAT 57.448 40.909 9.46 0.00 0.00 1.40
192 193 2.919666 CGAACCGGAAGCATGATTTT 57.080 45.000 9.46 0.00 0.00 1.82
205 206 2.614983 TGGAAGAAAGAAAACCGAACCG 59.385 45.455 0.00 0.00 0.00 4.44
206 207 4.848562 ATGGAAGAAAGAAAACCGAACC 57.151 40.909 0.00 0.00 0.00 3.62
207 208 7.534085 AAAAATGGAAGAAAGAAAACCGAAC 57.466 32.000 0.00 0.00 0.00 3.95
242 243 0.452184 TTTCTCGCACCGCACAAAAA 59.548 45.000 0.00 0.00 0.00 1.94
243 244 0.665835 ATTTCTCGCACCGCACAAAA 59.334 45.000 0.00 0.00 0.00 2.44
244 245 0.237235 GATTTCTCGCACCGCACAAA 59.763 50.000 0.00 0.00 0.00 2.83
245 246 1.573829 GGATTTCTCGCACCGCACAA 61.574 55.000 0.00 0.00 0.00 3.33
246 247 2.032634 GGATTTCTCGCACCGCACA 61.033 57.895 0.00 0.00 0.00 4.57
247 248 1.573829 TTGGATTTCTCGCACCGCAC 61.574 55.000 0.00 0.00 0.00 5.34
248 249 0.886938 TTTGGATTTCTCGCACCGCA 60.887 50.000 0.00 0.00 0.00 5.69
249 250 0.179189 CTTTGGATTTCTCGCACCGC 60.179 55.000 0.00 0.00 0.00 5.68
250 251 1.135972 CACTTTGGATTTCTCGCACCG 60.136 52.381 0.00 0.00 0.00 4.94
251 252 2.151202 TCACTTTGGATTTCTCGCACC 58.849 47.619 0.00 0.00 0.00 5.01
252 253 3.896648 TTCACTTTGGATTTCTCGCAC 57.103 42.857 0.00 0.00 0.00 5.34
253 254 4.606961 GTTTTCACTTTGGATTTCTCGCA 58.393 39.130 0.00 0.00 0.00 5.10
254 255 3.664025 CGTTTTCACTTTGGATTTCTCGC 59.336 43.478 0.00 0.00 0.00 5.03
255 256 4.219033 CCGTTTTCACTTTGGATTTCTCG 58.781 43.478 0.00 0.00 0.00 4.04
256 257 5.183014 ACCGTTTTCACTTTGGATTTCTC 57.817 39.130 0.00 0.00 0.00 2.87
257 258 5.592104 AACCGTTTTCACTTTGGATTTCT 57.408 34.783 0.00 0.00 0.00 2.52
258 259 5.501736 GCAAACCGTTTTCACTTTGGATTTC 60.502 40.000 0.00 0.00 0.00 2.17
259 260 4.331443 GCAAACCGTTTTCACTTTGGATTT 59.669 37.500 0.00 0.00 0.00 2.17
260 261 3.868661 GCAAACCGTTTTCACTTTGGATT 59.131 39.130 0.00 0.00 0.00 3.01
261 262 3.453424 GCAAACCGTTTTCACTTTGGAT 58.547 40.909 0.00 0.00 0.00 3.41
262 263 2.732597 CGCAAACCGTTTTCACTTTGGA 60.733 45.455 0.00 0.00 0.00 3.53
263 264 1.586123 CGCAAACCGTTTTCACTTTGG 59.414 47.619 0.00 0.00 0.00 3.28
264 265 2.520979 TCGCAAACCGTTTTCACTTTG 58.479 42.857 0.00 0.00 38.35 2.77
265 266 2.923605 TCGCAAACCGTTTTCACTTT 57.076 40.000 0.00 0.00 38.35 2.66
266 267 3.430333 AATCGCAAACCGTTTTCACTT 57.570 38.095 0.00 0.00 38.35 3.16
267 268 3.112580 CAAATCGCAAACCGTTTTCACT 58.887 40.909 0.00 0.00 36.89 3.41
268 269 3.109619 TCAAATCGCAAACCGTTTTCAC 58.890 40.909 0.00 0.00 36.89 3.18
269 270 3.422417 TCAAATCGCAAACCGTTTTCA 57.578 38.095 0.00 0.00 36.89 2.69
270 271 3.360289 CGTTCAAATCGCAAACCGTTTTC 60.360 43.478 0.00 0.00 36.89 2.29
271 272 2.532317 CGTTCAAATCGCAAACCGTTTT 59.468 40.909 0.00 0.00 38.88 2.43
272 273 2.113289 CGTTCAAATCGCAAACCGTTT 58.887 42.857 0.00 0.00 38.35 3.60
273 274 1.749153 CGTTCAAATCGCAAACCGTT 58.251 45.000 0.00 0.00 38.35 4.44
274 275 3.448076 CGTTCAAATCGCAAACCGT 57.552 47.368 0.00 0.00 38.35 4.83
282 283 4.634000 TCTTAAATCGTGCGTTCAAATCG 58.366 39.130 0.00 0.00 0.00 3.34
283 284 5.022021 CCTCTTAAATCGTGCGTTCAAATC 58.978 41.667 0.00 0.00 0.00 2.17
284 285 4.454504 ACCTCTTAAATCGTGCGTTCAAAT 59.545 37.500 0.00 0.00 0.00 2.32
285 286 3.810941 ACCTCTTAAATCGTGCGTTCAAA 59.189 39.130 0.00 0.00 0.00 2.69
286 287 3.395639 ACCTCTTAAATCGTGCGTTCAA 58.604 40.909 0.00 0.00 0.00 2.69
287 288 3.034721 ACCTCTTAAATCGTGCGTTCA 57.965 42.857 0.00 0.00 0.00 3.18
288 289 4.860907 TCTTACCTCTTAAATCGTGCGTTC 59.139 41.667 0.00 0.00 0.00 3.95
289 290 4.624452 GTCTTACCTCTTAAATCGTGCGTT 59.376 41.667 0.00 0.00 0.00 4.84
290 291 4.171754 GTCTTACCTCTTAAATCGTGCGT 58.828 43.478 0.00 0.00 0.00 5.24
291 292 4.171005 TGTCTTACCTCTTAAATCGTGCG 58.829 43.478 0.00 0.00 0.00 5.34
292 293 6.663944 AATGTCTTACCTCTTAAATCGTGC 57.336 37.500 0.00 0.00 0.00 5.34
293 294 8.251750 TGAAATGTCTTACCTCTTAAATCGTG 57.748 34.615 0.00 0.00 0.00 4.35
294 295 8.842358 TTGAAATGTCTTACCTCTTAAATCGT 57.158 30.769 0.00 0.00 0.00 3.73
302 303 9.965902 ACTCAATTATTGAAATGTCTTACCTCT 57.034 29.630 9.05 0.00 39.58 3.69
304 305 9.965902 AGACTCAATTATTGAAATGTCTTACCT 57.034 29.630 17.19 2.41 38.69 3.08
366 367 7.174772 AGTGATCACTGCATGTTAACATGTTAA 59.825 33.333 36.56 23.91 43.52 2.01
367 368 6.654582 AGTGATCACTGCATGTTAACATGTTA 59.345 34.615 36.56 27.65 43.52 2.41
368 369 5.474532 AGTGATCACTGCATGTTAACATGTT 59.525 36.000 36.56 24.10 43.52 2.71
369 370 5.005740 AGTGATCACTGCATGTTAACATGT 58.994 37.500 36.56 22.96 43.52 3.21
370 371 5.556355 AGTGATCACTGCATGTTAACATG 57.444 39.130 34.41 34.41 43.96 3.21
371 372 5.474532 ACAAGTGATCACTGCATGTTAACAT 59.525 36.000 28.52 15.47 41.58 2.71
372 373 4.821260 ACAAGTGATCACTGCATGTTAACA 59.179 37.500 28.52 11.41 41.58 2.41
373 374 5.049474 TGACAAGTGATCACTGCATGTTAAC 60.049 40.000 28.52 16.41 41.58 2.01
374 375 5.049474 GTGACAAGTGATCACTGCATGTTAA 60.049 40.000 28.52 17.08 42.68 2.01
375 376 4.452114 GTGACAAGTGATCACTGCATGTTA 59.548 41.667 28.52 21.15 42.68 2.41
409 410 3.074281 CGGTGCCCTTTGGAGGTA 58.926 61.111 0.00 0.00 41.85 3.08
424 443 4.857871 TTCGAAATCACTGATTAAGCGG 57.142 40.909 4.65 0.00 31.46 5.52
445 464 2.437716 CCTGCACGGCCCGTTTAT 60.438 61.111 5.76 0.00 38.32 1.40
581 618 2.103042 CGGGCACAACTGCTCTAGC 61.103 63.158 0.00 0.00 42.44 3.42
582 619 1.448540 CCGGGCACAACTGCTCTAG 60.449 63.158 0.00 0.00 42.44 2.43
583 620 1.888436 CTCCGGGCACAACTGCTCTA 61.888 60.000 0.00 0.00 42.44 2.43
584 621 3.241530 TCCGGGCACAACTGCTCT 61.242 61.111 0.00 0.00 42.44 4.09
588 625 4.641645 TGGCTCCGGGCACAACTG 62.642 66.667 15.49 0.00 43.20 3.16
589 626 4.335647 CTGGCTCCGGGCACAACT 62.336 66.667 15.49 0.00 43.20 3.16
590 627 3.842925 TTCTGGCTCCGGGCACAAC 62.843 63.158 15.49 0.70 43.20 3.32
592 629 4.329545 GTTCTGGCTCCGGGCACA 62.330 66.667 15.49 10.30 43.20 4.57
596 633 3.787001 GAGGGTTCTGGCTCCGGG 61.787 72.222 0.00 0.00 0.00 5.73
597 634 4.148825 CGAGGGTTCTGGCTCCGG 62.149 72.222 0.00 0.00 0.00 5.14
598 635 3.382832 ACGAGGGTTCTGGCTCCG 61.383 66.667 0.00 0.00 0.00 4.63
599 636 2.266055 CACGAGGGTTCTGGCTCC 59.734 66.667 0.00 0.00 0.00 4.70
660 731 2.343758 CTGGTGTACCTGTGCGCT 59.656 61.111 9.73 0.00 36.82 5.92
671 742 3.521529 GAGTGCCTGACGCTGGTGT 62.522 63.158 5.08 0.00 39.93 4.16
729 800 4.357947 GGGCCGCGAGCGATGATA 62.358 66.667 19.72 0.00 45.17 2.15
746 817 1.749258 GGAGCAAAACCCTAGGCCG 60.749 63.158 2.05 0.00 0.00 6.13
747 818 1.749258 CGGAGCAAAACCCTAGGCC 60.749 63.158 2.05 0.00 0.00 5.19
748 819 1.749258 CCGGAGCAAAACCCTAGGC 60.749 63.158 2.05 0.00 0.00 3.93
837 923 4.202121 CGTACACCTGCACTCATAACCTAT 60.202 45.833 0.00 0.00 0.00 2.57
860 974 6.597280 GGATGCTGAATACCCAGAGAAATATC 59.403 42.308 0.00 0.00 36.29 1.63
1010 1208 2.643551 GGGAATCATCGGAAGCAGAAA 58.356 47.619 0.00 0.00 0.00 2.52
1074 1272 1.280133 CCAAAGATCTGGAGGAGCACA 59.720 52.381 0.00 0.00 38.96 4.57
1101 1299 2.167487 GCTGAAGAGATCCGGGATATCC 59.833 54.545 24.22 13.87 31.45 2.59
1104 1302 2.109128 AGAGCTGAAGAGATCCGGGATA 59.891 50.000 10.08 0.00 34.98 2.59
1110 1308 1.473080 GCACCAGAGCTGAAGAGATCC 60.473 57.143 0.00 0.00 34.98 3.36
1125 1323 2.048597 GATCGACACACCGCACCA 60.049 61.111 0.00 0.00 0.00 4.17
1134 1332 1.153549 GAGGTGCCAGGATCGACAC 60.154 63.158 0.00 0.00 0.00 3.67
1171 1369 2.179517 CGAGCACAGACGGAGACC 59.820 66.667 0.00 0.00 0.00 3.85
1179 1377 3.573772 CTGGTTCGGCGAGCACAGA 62.574 63.158 25.89 4.70 0.00 3.41
1224 1422 4.639824 GTGTTAGCGTCACGGTCA 57.360 55.556 4.49 0.00 38.83 4.02
1266 1464 4.053295 GAGTGACGTGGTAAAGCTTGTTA 58.947 43.478 0.00 0.00 0.00 2.41
1446 1644 0.320421 GCACGCCCTCTTCAGTGTAA 60.320 55.000 0.00 0.00 36.99 2.41
1568 1766 3.321497 CAAGAAAGAACGACCCTCTCAG 58.679 50.000 0.00 0.00 0.00 3.35
1722 1920 7.153985 ACAAACCATCATTGTTGTTATGAAGG 58.846 34.615 0.00 0.00 43.24 3.46
1829 2027 4.806640 TGCGCTTGATAGGATATGATCA 57.193 40.909 9.73 0.00 0.00 2.92
1922 2120 5.215160 CAACCTGTTCTCTTTTTCCATTCG 58.785 41.667 0.00 0.00 0.00 3.34
2483 2878 2.882137 TGCAAACTAAAAAGGACCGGAG 59.118 45.455 9.46 0.00 0.00 4.63
2484 2879 2.933573 TGCAAACTAAAAAGGACCGGA 58.066 42.857 9.46 0.00 0.00 5.14
2485 2880 3.934457 ATGCAAACTAAAAAGGACCGG 57.066 42.857 0.00 0.00 0.00 5.28
2486 2881 7.981142 TCTTATATGCAAACTAAAAAGGACCG 58.019 34.615 0.00 0.00 0.00 4.79
2516 2911 6.746745 AAGTTTACGAGGTTTGACTTCAAA 57.253 33.333 0.07 0.07 42.90 2.69
2517 2912 6.372103 TCAAAGTTTACGAGGTTTGACTTCAA 59.628 34.615 0.00 0.00 34.72 2.69
2518 2913 5.875910 TCAAAGTTTACGAGGTTTGACTTCA 59.124 36.000 0.00 0.00 34.72 3.02
2519 2914 6.354039 TCAAAGTTTACGAGGTTTGACTTC 57.646 37.500 0.00 0.00 34.72 3.01
2523 2918 4.515361 TGGTCAAAGTTTACGAGGTTTGA 58.485 39.130 0.00 0.00 36.74 2.69
2524 2919 4.886247 TGGTCAAAGTTTACGAGGTTTG 57.114 40.909 0.00 0.00 0.00 2.93
2525 2920 5.494632 CTTGGTCAAAGTTTACGAGGTTT 57.505 39.130 0.00 0.00 0.00 3.27
2557 2952 7.033530 TCACGTTCTGAATGTTGGTATTTTT 57.966 32.000 12.38 0.00 0.00 1.94
2558 2953 6.627395 TCACGTTCTGAATGTTGGTATTTT 57.373 33.333 12.38 0.00 0.00 1.82
2559 2954 6.627395 TTCACGTTCTGAATGTTGGTATTT 57.373 33.333 12.38 0.00 33.65 1.40
2560 2955 6.627395 TTTCACGTTCTGAATGTTGGTATT 57.373 33.333 12.38 0.00 38.74 1.89
2561 2956 6.429692 TGATTTCACGTTCTGAATGTTGGTAT 59.570 34.615 12.38 4.74 38.74 2.73
2562 2957 5.760743 TGATTTCACGTTCTGAATGTTGGTA 59.239 36.000 12.38 0.32 38.74 3.25
2563 2958 4.578516 TGATTTCACGTTCTGAATGTTGGT 59.421 37.500 12.38 0.34 38.74 3.67
2564 2959 5.107109 TGATTTCACGTTCTGAATGTTGG 57.893 39.130 12.38 3.47 38.74 3.77
2565 2960 5.970612 TGTTGATTTCACGTTCTGAATGTTG 59.029 36.000 12.38 8.68 38.74 3.33
2566 2961 6.130298 TGTTGATTTCACGTTCTGAATGTT 57.870 33.333 12.38 0.00 38.74 2.71
2567 2962 5.749596 TGTTGATTTCACGTTCTGAATGT 57.250 34.783 9.40 9.40 38.74 2.71
2568 2963 5.970612 TGTTGTTGATTTCACGTTCTGAATG 59.029 36.000 8.04 8.04 38.74 2.67
2569 2964 6.130298 TGTTGTTGATTTCACGTTCTGAAT 57.870 33.333 0.00 0.00 38.74 2.57
2570 2965 5.553290 TGTTGTTGATTTCACGTTCTGAA 57.447 34.783 0.00 0.00 37.08 3.02
2571 2966 5.749596 ATGTTGTTGATTTCACGTTCTGA 57.250 34.783 0.00 0.00 0.00 3.27
2572 2967 7.351981 TCTAATGTTGTTGATTTCACGTTCTG 58.648 34.615 0.00 0.00 0.00 3.02
2573 2968 7.490962 TCTAATGTTGTTGATTTCACGTTCT 57.509 32.000 0.00 0.00 0.00 3.01
2574 2969 7.201266 GCATCTAATGTTGTTGATTTCACGTTC 60.201 37.037 0.00 0.00 0.00 3.95
2575 2970 6.582295 GCATCTAATGTTGTTGATTTCACGTT 59.418 34.615 0.00 0.00 0.00 3.99
2576 2971 6.086222 GCATCTAATGTTGTTGATTTCACGT 58.914 36.000 0.00 0.00 0.00 4.49
2577 2972 5.225743 CGCATCTAATGTTGTTGATTTCACG 59.774 40.000 0.00 0.00 0.00 4.35
2578 2973 6.086222 ACGCATCTAATGTTGTTGATTTCAC 58.914 36.000 0.00 0.00 0.00 3.18
2579 2974 6.072783 TGACGCATCTAATGTTGTTGATTTCA 60.073 34.615 0.00 0.00 0.00 2.69
2580 2975 6.314018 TGACGCATCTAATGTTGTTGATTTC 58.686 36.000 0.00 0.00 0.00 2.17
2581 2976 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
2582 2977 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
2583 2978 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
2584 2979 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
2585 2980 5.023920 GTCATGACGCATCTAATGTTGTTG 58.976 41.667 10.69 0.00 0.00 3.33
2586 2981 4.937620 AGTCATGACGCATCTAATGTTGTT 59.062 37.500 19.85 0.00 36.20 2.83
2587 2982 4.507710 AGTCATGACGCATCTAATGTTGT 58.492 39.130 19.85 0.00 36.20 3.32
2588 2983 5.475273 AAGTCATGACGCATCTAATGTTG 57.525 39.130 19.85 0.00 36.20 3.33
2589 2984 6.593770 TGTAAAGTCATGACGCATCTAATGTT 59.406 34.615 19.85 2.19 36.20 2.71
2590 2985 6.106003 TGTAAAGTCATGACGCATCTAATGT 58.894 36.000 19.85 0.00 36.20 2.71
2591 2986 6.588348 TGTAAAGTCATGACGCATCTAATG 57.412 37.500 19.85 0.00 36.20 1.90
2592 2987 7.792374 AATGTAAAGTCATGACGCATCTAAT 57.208 32.000 19.85 6.89 36.20 1.73
2593 2988 7.333174 TGAAATGTAAAGTCATGACGCATCTAA 59.667 33.333 19.85 4.88 36.20 2.10
2594 2989 6.816140 TGAAATGTAAAGTCATGACGCATCTA 59.184 34.615 19.85 7.13 36.20 1.98
2595 2990 5.643348 TGAAATGTAAAGTCATGACGCATCT 59.357 36.000 19.85 10.03 36.20 2.90
2596 2991 5.868257 TGAAATGTAAAGTCATGACGCATC 58.132 37.500 19.85 12.41 36.20 3.91
2597 2992 5.878332 TGAAATGTAAAGTCATGACGCAT 57.122 34.783 19.85 17.90 36.20 4.73
2598 2993 5.878332 ATGAAATGTAAAGTCATGACGCA 57.122 34.783 19.85 16.60 36.20 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.