AutoCloner

Multiple sequence alignment - TraesCS3D01G132000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G132000	chr3D	100.000	3433	0	0	1	3433	91796470	91799902	0.000000e+00	6340
1	TraesCS3D01G132000	chr3D	89.539	889	78	8	1262	2139	91708286	91709170	0.000000e+00	1112
2	TraesCS3D01G132000	chr3D	84.105	799	116	9	1235	2025	91682831	91682036	0.000000e+00	761
3	TraesCS3D01G132000	chr3D	90.110	273	23	3	2904	3173	91829881	91830152	5.450000e-93	351
4	TraesCS3D01G132000	chr3D	93.939	165	10	0	1079	1243	91708068	91708232	2.050000e-62	250
5	TraesCS3D01G132000	chr3D	86.404	228	30	1	1396	1622	91696362	91696589	7.360000e-62	248
6	TraesCS3D01G132000	chr3D	86.134	238	11	3	3213	3428	92261015	92261252	1.590000e-58	237
7	TraesCS3D01G132000	chr3D	88.272	162	19	0	1082	1243	91690882	91691043	9.720000e-46	195
8	TraesCS3D01G132000	chr3D	84.507	213	11	3	3238	3428	91830165	91830377	1.260000e-44	191
9	TraesCS3D01G132000	chr3D	78.000	300	32	17	3094	3377	92121837	92122118	1.280000e-34	158
10	TraesCS3D01G132000	chr3A	95.515	981	36	2	1235	2208	545331554	545332533	0.000000e+00	1561
11	TraesCS3D01G132000	chr3A	90.525	876	68	7	1257	2120	545281557	545282429	0.000000e+00	1144
12	TraesCS3D01G132000	chr3A	89.946	746	43	9	18	735	693588239	693587498	0.000000e+00	933
13	TraesCS3D01G132000	chr3A	91.530	673	33	9	2785	3433	545355075	545355747	0.000000e+00	905
14	TraesCS3D01G132000	chr3A	86.414	817	105	5	1235	2048	545257679	545258492	0.000000e+00	889
15	TraesCS3D01G132000	chr3A	96.845	317	9	1	2225	2541	545332518	545332833	2.350000e-146	529
16	TraesCS3D01G132000	chr3A	91.909	309	17	4	935	1243	545331229	545331529	3.170000e-115	425
17	TraesCS3D01G132000	chr3A	83.258	442	37	14	3019	3428	545361914	545362350	4.180000e-99	372
18	TraesCS3D01G132000	chr3A	95.000	160	8	0	1084	1243	545281346	545281505	5.690000e-63	252
19	TraesCS3D01G132000	chr3A	92.405	158	7	1	2559	2716	545334804	545334956	1.600000e-53	220
20	TraesCS3D01G132000	chr3A	88.623	167	19	0	1082	1248	545257493	545257659	1.620000e-48	204
21	TraesCS3D01G132000	chr3B	94.903	981	41	5	1235	2207	141740310	141741289	0.000000e+00	1526
22	TraesCS3D01G132000	chr3B	89.916	833	72	5	1235	2056	141735578	141736409	0.000000e+00	1062
23	TraesCS3D01G132000	chr3B	90.335	807	70	2	1258	2056	141289139	141289945	0.000000e+00	1051
24	TraesCS3D01G132000	chr3B	88.591	894	49	21	2566	3428	141743340	141744211	0.000000e+00	1037
25	TraesCS3D01G132000	chr3B	86.593	813	106	3	1235	2046	141285795	141286605	0.000000e+00	894
26	TraesCS3D01G132000	chr3B	87.337	766	45	18	2713	3433	141811780	141812538	0.000000e+00	830
27	TraesCS3D01G132000	chr3B	85.496	524	37	11	2941	3425	141806932	141807455	8.500000e-141	510
28	TraesCS3D01G132000	chr3B	86.774	310	8	13	935	1243	141740008	141740285	7.150000e-82	315
29	TraesCS3D01G132000	chr3B	93.333	165	11	0	1079	1243	141288922	141289086	9.520000e-61	244
30	TraesCS3D01G132000	chr3B	89.062	192	15	3	1058	1243	141735362	141735553	2.060000e-57	233
31	TraesCS3D01G132000	chr3B	92.715	151	9	2	2566	2715	141809792	141809941	2.070000e-52	217
32	TraesCS3D01G132000	chr3B	88.889	162	18	0	1082	1243	141285609	141285770	2.090000e-47	200
33	TraesCS3D01G132000	chr3B	87.179	156	11	6	2392	2539	141809360	141809514	5.890000e-38	169
34	TraesCS3D01G132000	chr3B	85.816	141	13	4	3244	3377	141861141	141861281	3.570000e-30	143
35	TraesCS3D01G132000	chr2D	95.112	941	24	6	17	935	391385784	391384844	0.000000e+00	1463
36	TraesCS3D01G132000	chr7A	93.952	926	42	8	19	935	16241122	16242042	0.000000e+00	1387
37	TraesCS3D01G132000	chr7A	79.055	487	68	21	2912	3375	509479052	509479527	1.550000e-78	303
38	TraesCS3D01G132000	chr4A	90.919	947	55	13	18	936	519195433	519196376	0.000000e+00	1243
39	TraesCS3D01G132000	chr4A	90.067	745	44	7	18	735	711665840	711666581	0.000000e+00	939
40	TraesCS3D01G132000	chr7B	90.147	954	57	11	18	939	722935793	722934845	0.000000e+00	1206
41	TraesCS3D01G132000	chr7B	79.424	486	68	22	2912	3375	440801755	440801280	7.150000e-82	315
42	TraesCS3D01G132000	chrUn	87.058	989	55	13	18	938	280986709	280985726	0.000000e+00	1050
43	TraesCS3D01G132000	chrUn	87.058	989	55	13	18	938	281014538	281013555	0.000000e+00	1050
44	TraesCS3D01G132000	chrUn	87.120	986	54	13	18	935	346329063	346330043	0.000000e+00	1050
45	TraesCS3D01G132000	chr2B	90.716	754	38	8	18	743	198068191	198068940	0.000000e+00	976
46	TraesCS3D01G132000	chr2B	90.067	745	42	11	19	735	477326609	477327349	0.000000e+00	937
47	TraesCS3D01G132000	chr2B	84.789	355	42	6	592	937	111465277	111464926	2.540000e-91	346
48	TraesCS3D01G132000	chr4B	90.604	745	40	7	18	735	519045865	519045124	0.000000e+00	961
49	TraesCS3D01G132000	chr1D	88.664	247	22	5	644	889	255428361	255428120	2.590000e-76	296
50	TraesCS3D01G132000	chr7D	78.689	488	68	25	2912	3375	423699659	423699184	3.350000e-75	292

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G132000	chr3D	91796470	91799902	3432	False	6340.00	6340	100.00000	1	3433	1	chr3D.!!$F3	3432
1	TraesCS3D01G132000	chr3D	91682036	91682831	795	True	761.00	761	84.10500	1235	2025	1	chr3D.!!$R1	790
2	TraesCS3D01G132000	chr3D	91708068	91709170	1102	False	681.00	1112	91.73900	1079	2139	2	chr3D.!!$F6	1060
3	TraesCS3D01G132000	chr3A	693587498	693588239	741	True	933.00	933	89.94600	18	735	1	chr3A.!!$R1	717
4	TraesCS3D01G132000	chr3A	545355075	545355747	672	False	905.00	905	91.53000	2785	3433	1	chr3A.!!$F1	648
5	TraesCS3D01G132000	chr3A	545281346	545282429	1083	False	698.00	1144	92.76250	1084	2120	2	chr3A.!!$F4	1036
6	TraesCS3D01G132000	chr3A	545331229	545334956	3727	False	683.75	1561	94.16850	935	2716	4	chr3A.!!$F5	1781
7	TraesCS3D01G132000	chr3A	545257493	545258492	999	False	546.50	889	87.51850	1082	2048	2	chr3A.!!$F3	966
8	TraesCS3D01G132000	chr3B	141735362	141744211	8849	False	834.60	1526	89.84920	935	3428	5	chr3B.!!$F3	2493
9	TraesCS3D01G132000	chr3B	141285609	141289945	4336	False	597.25	1051	89.78750	1079	2056	4	chr3B.!!$F2	977
10	TraesCS3D01G132000	chr3B	141806932	141812538	5606	False	431.50	830	88.18175	2392	3433	4	chr3B.!!$F4	1041
11	TraesCS3D01G132000	chr2D	391384844	391385784	940	True	1463.00	1463	95.11200	17	935	1	chr2D.!!$R1	918
12	TraesCS3D01G132000	chr7A	16241122	16242042	920	False	1387.00	1387	93.95200	19	935	1	chr7A.!!$F1	916
13	TraesCS3D01G132000	chr4A	519195433	519196376	943	False	1243.00	1243	90.91900	18	936	1	chr4A.!!$F1	918
14	TraesCS3D01G132000	chr4A	711665840	711666581	741	False	939.00	939	90.06700	18	735	1	chr4A.!!$F2	717
15	TraesCS3D01G132000	chr7B	722934845	722935793	948	True	1206.00	1206	90.14700	18	939	1	chr7B.!!$R2	921
16	TraesCS3D01G132000	chrUn	280985726	280986709	983	True	1050.00	1050	87.05800	18	938	1	chrUn.!!$R1	920
17	TraesCS3D01G132000	chrUn	281013555	281014538	983	True	1050.00	1050	87.05800	18	938	1	chrUn.!!$R2	920
18	TraesCS3D01G132000	chrUn	346329063	346330043	980	False	1050.00	1050	87.12000	18	935	1	chrUn.!!$F1	917
19	TraesCS3D01G132000	chr2B	198068191	198068940	749	False	976.00	976	90.71600	18	743	1	chr2B.!!$F1	725
20	TraesCS3D01G132000	chr2B	477326609	477327349	740	False	937.00	937	90.06700	19	735	1	chr2B.!!$F2	716
21	TraesCS3D01G132000	chr4B	519045124	519045865	741	True	961.00	961	90.60400	18	735	1	chr4B.!!$R1	717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
683	741	1.009389	GTCGGCGAGAAACACAGGAG	61.009	60.0	11.2	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2561	8484	0.618968	ACCTGCCTGGAGTAAGGAGG	60.619	60.0	0.0	0.0	40.02	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
113	115	1.959226	GCATCGACCGGTGTTGTGT	60.959	57.895	14.63	0.00	0.00	3.72
419	452	4.094590	TGCAACCAGTTTCAATTTTTGCTG	59.905	37.500	0.00	0.00	38.89	4.41
683	741	1.009389	GTCGGCGAGAAACACAGGAG	61.009	60.000	11.20	0.00	0.00	3.69
684	742	1.176619	TCGGCGAGAAACACAGGAGA	61.177	55.000	4.99	0.00	0.00	3.71
954	1039	4.024556	GCCCAAATTATCGAGAGTGACATG	60.025	45.833	0.00	0.00	0.00	3.21
991	1076	4.819105	TCGCTTTGGATCCTTCTCTAAA	57.181	40.909	14.23	2.90	0.00	1.85
992	1077	4.759782	TCGCTTTGGATCCTTCTCTAAAG	58.240	43.478	14.23	13.61	43.03	1.85
994	1079	4.568760	CGCTTTGGATCCTTCTCTAAAGTC	59.431	45.833	14.23	8.35	42.48	3.01
997	1082	7.331791	GCTTTGGATCCTTCTCTAAAGTCTAA	58.668	38.462	14.23	0.00	42.48	2.10
1029	1114	2.288825	TGGCTCCACTTTAACTCTCACG	60.289	50.000	0.00	0.00	0.00	4.35
1045	1130	2.347630	ACGAATCACCGTGTCCTCA	58.652	52.632	0.00	0.00	41.70	3.86
1055	1140	1.946768	CCGTGTCCTCAAAAGCTCAAA	59.053	47.619	0.00	0.00	0.00	2.69
1979	7462	2.654877	GTCCTTCAGCCGTTCGGA	59.345	61.111	15.69	0.00	0.00	4.55
2166	7665	2.784347	TGTTGAGTGTTGTGTGTTGGA	58.216	42.857	0.00	0.00	0.00	3.53
2172	7671	0.749649	TGTTGTGTGTTGGATTGCCC	59.250	50.000	0.00	0.00	0.00	5.36
2176	7675	0.319813	GTGTGTTGGATTGCCCTTGC	60.320	55.000	0.00	0.00	35.38	4.01
2206	7705	9.262358	GAGCGTAGAAATAAATCTAGTCCATTT	57.738	33.333	0.00	0.00	32.72	2.32
2207	7706	9.262358	AGCGTAGAAATAAATCTAGTCCATTTC	57.738	33.333	10.89	10.89	36.37	2.17
2208	7707	8.496751	GCGTAGAAATAAATCTAGTCCATTTCC	58.503	37.037	13.33	4.62	36.64	3.13
2209	7708	9.765795	CGTAGAAATAAATCTAGTCCATTTCCT	57.234	33.333	13.33	0.00	36.64	3.36
2306	7805	6.764877	TCTCGACTCAATTGTTTCTAACAC	57.235	37.500	5.13	0.00	41.97	3.32
2318	7817	3.350219	TTCTAACACAATGCTCCCTCC	57.650	47.619	0.00	0.00	0.00	4.30
2350	7849	5.712152	AATGGTCCTCACTCAAACAAATC	57.288	39.130	0.00	0.00	0.00	2.17
2369	7869	7.327975	ACAAATCGTTTCTATCTGGATGTACA	58.672	34.615	0.00	0.00	0.00	2.90
2716	12829	2.624838	CCCGTCCGCTAACTATCCTAAA	59.375	50.000	0.00	0.00	0.00	1.85
2725	12838	4.654724	GCTAACTATCCTAAACCACCCTCT	59.345	45.833	0.00	0.00	0.00	3.69
2728	12841	5.745988	ACTATCCTAAACCACCCTCTAGA	57.254	43.478	0.00	0.00	0.00	2.43
2756	12873	3.131577	TGGAAACGCCGTATTCATAGTCT	59.868	43.478	12.01	0.00	40.66	3.24
2757	12874	4.117685	GGAAACGCCGTATTCATAGTCTT	58.882	43.478	12.01	0.00	0.00	3.01
2811	12928	7.403312	TTTTCACCAATGACTATACCCATTG	57.597	36.000	12.24	12.24	45.45	2.82
2833	12951	8.726988	CATTGTTCCGAAAGATAGTTTTTCCTA	58.273	33.333	0.00	0.00	32.26	2.94
2894	13015	2.064014	GCAAAGCAGAAAAGCCATCAC	58.936	47.619	0.00	0.00	34.23	3.06
2895	13016	2.288640	GCAAAGCAGAAAAGCCATCACT	60.289	45.455	0.00	0.00	34.23	3.41
2896	13017	3.572584	CAAAGCAGAAAAGCCATCACTC	58.427	45.455	0.00	0.00	34.23	3.51
2897	13018	2.875094	AGCAGAAAAGCCATCACTCT	57.125	45.000	0.00	0.00	34.23	3.24
2898	13019	3.988976	AGCAGAAAAGCCATCACTCTA	57.011	42.857	0.00	0.00	34.23	2.43
2900	13021	4.853007	AGCAGAAAAGCCATCACTCTATT	58.147	39.130	0.00	0.00	34.23	1.73
2902	13023	4.397417	GCAGAAAAGCCATCACTCTATTGT	59.603	41.667	0.00	0.00	0.00	2.71
2931	13067	2.101415	CGTGGCTCTGGATTACTCATCA	59.899	50.000	0.00	0.00	32.79	3.07
2996	13133	1.606606	GAAAGATTTGCTTGACGGCG	58.393	50.000	4.80	4.80	36.80	6.46
3077	13214	2.224621	ACAGTTCCACCACAAGGAGATG	60.225	50.000	0.00	0.00	36.33	2.90
3084	13221	1.078918	CACAAGGAGATGGCAGCGA	60.079	57.895	0.00	0.00	0.00	4.93
3428	13595	6.533730	ACAACCAGTAGAAATGACTCATCAA	58.466	36.000	0.00	0.00	38.69	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.046314	CTTGTGACGCCCCCGATT	60.046	61.111	0.00	0.00	38.29	3.34
7	8	4.030452	GTGGCAGCTTGTGACGCC	62.030	66.667	3.59	3.59	38.99	5.68
8	9	2.722130	CTTGTGGCAGCTTGTGACGC	62.722	60.000	0.00	0.00	46.04	5.19
9	10	1.280746	CTTGTGGCAGCTTGTGACG	59.719	57.895	0.00	0.00	36.69	4.35
10	11	1.008079	GCTTGTGGCAGCTTGTGAC	60.008	57.895	0.00	0.00	41.35	3.67
11	12	2.545596	CGCTTGTGGCAGCTTGTGA	61.546	57.895	0.00	0.00	41.91	3.58
12	13	2.050714	CGCTTGTGGCAGCTTGTG	60.051	61.111	0.00	0.00	41.91	3.33
13	14	3.289834	CCGCTTGTGGCAGCTTGT	61.290	61.111	0.00	0.00	41.91	3.16
14	15	4.047059	CCCGCTTGTGGCAGCTTG	62.047	66.667	0.00	0.00	41.91	4.01
113	115	3.612251	CCGAAGGCTTCTCCCGTA	58.388	61.111	23.74	0.00	46.14	4.02
419	452	3.244976	CAAAATCAAAGACACCGATGGC	58.755	45.455	0.00	0.00	0.00	4.40
683	741	2.202146	CTCACCGTCGTCGTCGTC	60.202	66.667	10.76	0.00	38.33	4.20
684	742	3.720193	CCTCACCGTCGTCGTCGT	61.720	66.667	10.76	0.00	38.33	4.34
831	916	2.069273	CGATCTGGGTCTCACAACAAC	58.931	52.381	0.00	0.00	0.00	3.32
896	981	2.280524	CACCGGCCGAACAGTTGA	60.281	61.111	30.73	0.00	0.00	3.18
922	1007	3.006430	TCGATAATTTGGGCGCTGATAGA	59.994	43.478	7.64	0.00	0.00	1.98
954	1039	0.989890	GCGATGTTACGTCAGGTCAC	59.010	55.000	5.38	0.00	35.59	3.67
992	1077	5.845167	GGAGCCATCCAAGTCGGTTAGAC	62.845	56.522	0.00	0.00	46.61	2.59
994	1079	1.473434	GGAGCCATCCAAGTCGGTTAG	60.473	57.143	0.00	0.00	45.87	2.34
997	1082	2.990479	GGAGCCATCCAAGTCGGT	59.010	61.111	0.00	0.00	45.87	4.69
1018	1103	3.928727	ACGGTGATTCGTGAGAGTTAA	57.071	42.857	0.00	0.00	43.69	2.01
1029	1114	2.095718	GCTTTTGAGGACACGGTGATTC	60.096	50.000	16.29	9.35	0.00	2.52
1045	1130	3.037549	TGGATGGTTGGTTTGAGCTTTT	58.962	40.909	0.00	0.00	0.00	2.27
1055	1140	2.169769	ACGAATACGATGGATGGTTGGT	59.830	45.455	0.00	0.00	42.66	3.67
1221	6658	0.311790	GTACACGACGTCCTTCCACA	59.688	55.000	10.58	0.00	0.00	4.17
1283	6764	1.375523	GCCGTGGAAGTACACCAGG	60.376	63.158	18.42	18.42	41.24	4.45
1640	7123	2.175202	GTGAAGAAGGCAGAGAGGAGA	58.825	52.381	0.00	0.00	0.00	3.71
2172	7671	5.389642	TTTATTTCTACGCTCGATGCAAG	57.610	39.130	0.00	0.00	43.06	4.01
2176	7675	7.271653	GGACTAGATTTATTTCTACGCTCGATG	59.728	40.741	0.00	0.00	0.00	3.84
2213	7712	9.981114	GAAATGGACTAGATTTTCCTTCAAAAA	57.019	29.630	0.00	0.00	37.52	1.94
2214	7713	9.367160	AGAAATGGACTAGATTTTCCTTCAAAA	57.633	29.630	0.00	0.00	38.38	2.44
2215	7714	8.796475	CAGAAATGGACTAGATTTTCCTTCAAA	58.204	33.333	0.00	0.00	32.55	2.69
2216	7715	8.163408	TCAGAAATGGACTAGATTTTCCTTCAA	58.837	33.333	0.00	0.00	32.55	2.69
2217	7716	7.689299	TCAGAAATGGACTAGATTTTCCTTCA	58.311	34.615	0.00	0.00	32.55	3.02
2218	7717	8.744568	ATCAGAAATGGACTAGATTTTCCTTC	57.255	34.615	0.00	0.00	32.55	3.46
2219	7718	8.964772	CAATCAGAAATGGACTAGATTTTCCTT	58.035	33.333	0.00	0.00	32.55	3.36
2220	7719	7.559170	CCAATCAGAAATGGACTAGATTTTCCT	59.441	37.037	0.00	0.00	39.12	3.36
2221	7720	7.557719	TCCAATCAGAAATGGACTAGATTTTCC	59.442	37.037	0.00	0.00	40.74	3.13
2222	7721	8.511604	TCCAATCAGAAATGGACTAGATTTTC	57.488	34.615	0.00	0.47	40.74	2.29
2233	7732	5.395682	ACAACACATCCAATCAGAAATGG	57.604	39.130	0.00	0.00	38.09	3.16
2234	7733	6.144886	CACAACAACACATCCAATCAGAAATG	59.855	38.462	0.00	0.00	0.00	2.32
2235	7734	6.218019	CACAACAACACATCCAATCAGAAAT	58.782	36.000	0.00	0.00	0.00	2.17
2236	7735	5.590145	CACAACAACACATCCAATCAGAAA	58.410	37.500	0.00	0.00	0.00	2.52
2237	7736	4.499526	GCACAACAACACATCCAATCAGAA	60.500	41.667	0.00	0.00	0.00	3.02
2306	7805	2.205022	TTTGAGTGGAGGGAGCATTG	57.795	50.000	0.00	0.00	0.00	2.82
2350	7849	4.916870	TCGTGTACATCCAGATAGAAACG	58.083	43.478	0.00	0.00	0.00	3.60
2488	8033	2.906389	TCACAGCTATCTGGTTGGACTT	59.094	45.455	0.00	0.00	44.54	3.01
2560	8483	1.341156	CCTGCCTGGAGTAAGGAGGG	61.341	65.000	0.00	0.00	40.02	4.30
2561	8484	0.618968	ACCTGCCTGGAGTAAGGAGG	60.619	60.000	0.00	0.00	40.02	4.30
2562	8485	1.280457	AACCTGCCTGGAGTAAGGAG	58.720	55.000	0.00	0.00	40.02	3.69
2563	8486	1.742308	AAACCTGCCTGGAGTAAGGA	58.258	50.000	0.00	0.00	40.02	3.36
2683	10955	2.593956	GGACGGGCTCCCTTGAACT	61.594	63.158	3.11	0.00	31.83	3.01
2716	12829	1.561542	CCAAATGCTCTAGAGGGTGGT	59.438	52.381	21.23	0.00	0.00	4.16
2756	12873	5.433051	AGATTGGGGATTCTGTTGGAGATAA	59.567	40.000	0.00	0.00	0.00	1.75
2757	12874	4.977739	AGATTGGGGATTCTGTTGGAGATA	59.022	41.667	0.00	0.00	0.00	1.98
2805	12922	5.897377	AAACTATCTTTCGGAACAATGGG	57.103	39.130	0.00	0.00	0.00	4.00
2811	12928	6.652062	TGGTAGGAAAAACTATCTTTCGGAAC	59.348	38.462	0.00	0.00	34.26	3.62
2833	12951	6.267471	TCAATTCTTCCAGCAAGTATTTTGGT	59.733	34.615	0.00	0.00	31.51	3.67
2894	13015	5.239744	AGAGCCACGACATAGTACAATAGAG	59.760	44.000	0.00	0.00	0.00	2.43
2895	13016	5.008712	CAGAGCCACGACATAGTACAATAGA	59.991	44.000	0.00	0.00	0.00	1.98
2896	13017	5.215903	CAGAGCCACGACATAGTACAATAG	58.784	45.833	0.00	0.00	0.00	1.73
2897	13018	4.037565	CCAGAGCCACGACATAGTACAATA	59.962	45.833	0.00	0.00	0.00	1.90
2898	13019	3.181475	CCAGAGCCACGACATAGTACAAT	60.181	47.826	0.00	0.00	0.00	2.71
2900	13021	1.749063	CCAGAGCCACGACATAGTACA	59.251	52.381	0.00	0.00	0.00	2.90
2902	13023	2.430248	TCCAGAGCCACGACATAGTA	57.570	50.000	0.00	0.00	0.00	1.82
2931	13067	6.617782	AATCTCATGTATCGATTCCTCCAT	57.382	37.500	1.71	0.00	0.00	3.41
2968	13105	2.268730	GCAAATCTTTCCCTTGCTCG	57.731	50.000	0.00	0.00	41.74	5.03
2996	13133	5.069119	AGGTGGACTTGTTGGAGAAAATTTC	59.931	40.000	0.00	0.00	0.00	2.17
3077	13214	1.608283	GGTATCCCAGTTATCGCTGCC	60.608	57.143	0.00	0.00	35.28	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.