Multiple sequence alignment - TraesCS3D01G131900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G131900 chr3D 100.000 3002 0 0 1 3002 91707075 91710076 0.000000e+00 5544.0
1 TraesCS3D01G131900 chr3D 89.539 889 78 8 1212 2096 91797731 91798608 0.000000e+00 1112.0
2 TraesCS3D01G131900 chr3D 84.330 970 147 5 1016 1981 91682998 91682030 0.000000e+00 944.0
3 TraesCS3D01G131900 chr3D 93.706 143 9 0 47 189 134656709 134656851 6.520000e-52 215.0
4 TraesCS3D01G131900 chr3D 100.000 37 0 0 3 39 134656680 134656716 5.370000e-08 69.4
5 TraesCS3D01G131900 chr3D 94.872 39 2 0 769 807 91783318 91783356 8.990000e-06 62.1
6 TraesCS3D01G131900 chr3B 89.386 1988 149 18 709 2675 141735104 141737050 0.000000e+00 2446.0
7 TraesCS3D01G131900 chr3B 93.678 1566 68 13 715 2276 141288653 141290191 0.000000e+00 2314.0
8 TraesCS3D01G131900 chr3B 89.621 1108 94 11 998 2096 141740125 141741220 0.000000e+00 1389.0
9 TraesCS3D01G131900 chr3B 85.507 276 27 8 193 455 141288254 141288529 2.950000e-70 276.0
10 TraesCS3D01G131900 chr3B 85.965 114 16 0 549 662 140848473 140848360 4.060000e-24 122.0
11 TraesCS3D01G131900 chr3B 92.424 66 3 2 742 807 141739892 141739955 3.190000e-15 93.5
12 TraesCS3D01G131900 chr3A 92.278 1554 85 19 552 2078 545280884 545282429 0.000000e+00 2172.0
13 TraesCS3D01G131900 chr3A 90.171 1109 88 10 997 2096 545331368 545332464 0.000000e+00 1424.0
14 TraesCS3D01G131900 chr3A 86.864 982 125 3 995 1975 545257491 545258469 0.000000e+00 1096.0
15 TraesCS3D01G131900 chr3A 84.227 970 148 5 1016 1981 107757070 107756102 0.000000e+00 939.0
16 TraesCS3D01G131900 chr3A 84.651 645 92 5 2284 2924 545289939 545290580 1.170000e-178 636.0
17 TraesCS3D01G131900 chr3A 91.160 181 14 2 2112 2292 545282425 545282603 8.310000e-61 244.0
18 TraesCS3D01G131900 chr3A 81.102 127 22 2 543 669 576674706 576674582 1.900000e-17 100.0
19 TraesCS3D01G131900 chr3A 90.566 53 5 0 133 185 716627357 716627409 1.490000e-08 71.3
20 TraesCS3D01G131900 chr4D 92.063 189 11 4 1 188 56699551 56699736 2.300000e-66 263.0
21 TraesCS3D01G131900 chr4D 82.051 117 21 0 543 659 504555593 504555477 1.900000e-17 100.0
22 TraesCS3D01G131900 chr4D 80.620 129 19 5 543 669 416822262 416822138 8.860000e-16 95.3
23 TraesCS3D01G131900 chr4D 90.000 60 5 1 133 191 64723148 64723089 3.210000e-10 76.8
24 TraesCS3D01G131900 chr4A 92.000 150 9 3 47 195 743514061 743514208 1.090000e-49 207.0
25 TraesCS3D01G131900 chr2A 85.124 121 16 2 543 662 653873051 653872932 4.060000e-24 122.0
26 TraesCS3D01G131900 chr2D 81.208 149 25 2 508 653 383336221 383336073 1.890000e-22 117.0
27 TraesCS3D01G131900 chr2D 81.061 132 14 9 543 670 574443458 574443334 8.860000e-16 95.3
28 TraesCS3D01G131900 chr5D 84.956 113 17 0 543 655 32607923 32607811 6.800000e-22 115.0
29 TraesCS3D01G131900 chr5D 82.645 121 17 3 543 662 533115084 533115201 1.470000e-18 104.0
30 TraesCS3D01G131900 chr6A 80.392 153 25 4 48 196 181573371 181573522 8.800000e-21 111.0
31 TraesCS3D01G131900 chr1A 93.750 48 3 0 133 180 396409024 396408977 4.150000e-09 73.1
32 TraesCS3D01G131900 chr6B 89.796 49 5 0 140 188 707708142 707708094 2.500000e-06 63.9
33 TraesCS3D01G131900 chr4B 100.000 32 0 0 2357 2388 80593197 80593166 3.230000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G131900 chr3D 91707075 91710076 3001 False 5544.0 5544 100.0000 1 3002 1 chr3D.!!$F1 3001
1 TraesCS3D01G131900 chr3D 91797731 91798608 877 False 1112.0 1112 89.5390 1212 2096 1 chr3D.!!$F3 884
2 TraesCS3D01G131900 chr3D 91682030 91682998 968 True 944.0 944 84.3300 1016 1981 1 chr3D.!!$R1 965
3 TraesCS3D01G131900 chr3B 141735104 141741220 6116 False 1309.5 2446 90.4770 709 2675 3 chr3B.!!$F2 1966
4 TraesCS3D01G131900 chr3B 141288254 141290191 1937 False 1295.0 2314 89.5925 193 2276 2 chr3B.!!$F1 2083
5 TraesCS3D01G131900 chr3A 545331368 545332464 1096 False 1424.0 1424 90.1710 997 2096 1 chr3A.!!$F3 1099
6 TraesCS3D01G131900 chr3A 545280884 545282603 1719 False 1208.0 2172 91.7190 552 2292 2 chr3A.!!$F5 1740
7 TraesCS3D01G131900 chr3A 545257491 545258469 978 False 1096.0 1096 86.8640 995 1975 1 chr3A.!!$F1 980
8 TraesCS3D01G131900 chr3A 107756102 107757070 968 True 939.0 939 84.2270 1016 1981 1 chr3A.!!$R1 965
9 TraesCS3D01G131900 chr3A 545289939 545290580 641 False 636.0 636 84.6510 2284 2924 1 chr3A.!!$F2 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 627 0.035725 TCTCGAAGGTGCTCGTAGGA 60.036 55.0 0.0 0.0 39.84 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2552 7364 0.251297 CCAGATCAGCCCACACCAAA 60.251 55.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.814268 GCGGCGGTGTCTACGGTA 61.814 66.667 9.78 0.00 0.00 4.02
25 26 3.113745 CGGCGGTGTCTACGGTAT 58.886 61.111 0.00 0.00 0.00 2.73
26 27 1.298863 CGGCGGTGTCTACGGTATG 60.299 63.158 0.00 0.00 0.00 2.39
27 28 1.590792 GGCGGTGTCTACGGTATGC 60.591 63.158 0.00 0.00 0.00 3.14
28 29 1.942712 GCGGTGTCTACGGTATGCG 60.943 63.158 0.00 0.00 0.00 4.73
29 30 1.430632 CGGTGTCTACGGTATGCGT 59.569 57.895 0.00 0.00 0.00 5.24
30 31 0.864377 CGGTGTCTACGGTATGCGTG 60.864 60.000 0.00 0.00 0.00 5.34
31 32 0.171903 GGTGTCTACGGTATGCGTGT 59.828 55.000 0.00 0.00 0.00 4.49
32 33 1.265568 GTGTCTACGGTATGCGTGTG 58.734 55.000 0.00 0.00 0.00 3.82
33 34 0.457166 TGTCTACGGTATGCGTGTGC 60.457 55.000 0.00 0.00 43.20 4.57
43 44 4.195308 GCGTGTGCGGGAGATAAA 57.805 55.556 0.00 0.00 38.78 1.40
44 45 2.006772 GCGTGTGCGGGAGATAAAG 58.993 57.895 0.00 0.00 38.78 1.85
45 46 0.739813 GCGTGTGCGGGAGATAAAGT 60.740 55.000 0.00 0.00 38.78 2.66
46 47 1.722011 CGTGTGCGGGAGATAAAGTT 58.278 50.000 0.00 0.00 0.00 2.66
47 48 1.393539 CGTGTGCGGGAGATAAAGTTG 59.606 52.381 0.00 0.00 0.00 3.16
48 49 1.130561 GTGTGCGGGAGATAAAGTTGC 59.869 52.381 0.00 0.00 0.00 4.17
49 50 0.373716 GTGCGGGAGATAAAGTTGCG 59.626 55.000 0.00 0.00 0.00 4.85
50 51 0.742990 TGCGGGAGATAAAGTTGCGG 60.743 55.000 0.00 0.00 0.00 5.69
51 52 1.436983 GCGGGAGATAAAGTTGCGGG 61.437 60.000 0.00 0.00 0.00 6.13
52 53 0.177141 CGGGAGATAAAGTTGCGGGA 59.823 55.000 0.00 0.00 0.00 5.14
53 54 1.806623 CGGGAGATAAAGTTGCGGGAG 60.807 57.143 0.00 0.00 0.00 4.30
54 55 1.475213 GGGAGATAAAGTTGCGGGAGG 60.475 57.143 0.00 0.00 0.00 4.30
55 56 1.485066 GGAGATAAAGTTGCGGGAGGA 59.515 52.381 0.00 0.00 0.00 3.71
56 57 2.104963 GGAGATAAAGTTGCGGGAGGAT 59.895 50.000 0.00 0.00 0.00 3.24
57 58 3.323979 GGAGATAAAGTTGCGGGAGGATA 59.676 47.826 0.00 0.00 0.00 2.59
58 59 4.202326 GGAGATAAAGTTGCGGGAGGATAA 60.202 45.833 0.00 0.00 0.00 1.75
59 60 5.365619 GAGATAAAGTTGCGGGAGGATAAA 58.634 41.667 0.00 0.00 0.00 1.40
60 61 5.368989 AGATAAAGTTGCGGGAGGATAAAG 58.631 41.667 0.00 0.00 0.00 1.85
61 62 2.420058 AAGTTGCGGGAGGATAAAGG 57.580 50.000 0.00 0.00 0.00 3.11
62 63 1.580059 AGTTGCGGGAGGATAAAGGA 58.420 50.000 0.00 0.00 0.00 3.36
63 64 1.209747 AGTTGCGGGAGGATAAAGGAC 59.790 52.381 0.00 0.00 0.00 3.85
64 65 1.209747 GTTGCGGGAGGATAAAGGACT 59.790 52.381 0.00 0.00 0.00 3.85
65 66 0.830648 TGCGGGAGGATAAAGGACTG 59.169 55.000 0.00 0.00 0.00 3.51
66 67 0.106894 GCGGGAGGATAAAGGACTGG 59.893 60.000 0.00 0.00 0.00 4.00
67 68 0.759346 CGGGAGGATAAAGGACTGGG 59.241 60.000 0.00 0.00 0.00 4.45
68 69 1.691482 CGGGAGGATAAAGGACTGGGA 60.691 57.143 0.00 0.00 0.00 4.37
69 70 2.488836 GGGAGGATAAAGGACTGGGAA 58.511 52.381 0.00 0.00 0.00 3.97
70 71 2.439880 GGGAGGATAAAGGACTGGGAAG 59.560 54.545 0.00 0.00 0.00 3.46
71 72 3.385115 GGAGGATAAAGGACTGGGAAGA 58.615 50.000 0.00 0.00 0.00 2.87
72 73 3.977326 GGAGGATAAAGGACTGGGAAGAT 59.023 47.826 0.00 0.00 0.00 2.40
73 74 5.155905 GGAGGATAAAGGACTGGGAAGATA 58.844 45.833 0.00 0.00 0.00 1.98
74 75 5.607171 GGAGGATAAAGGACTGGGAAGATAA 59.393 44.000 0.00 0.00 0.00 1.75
75 76 6.239743 GGAGGATAAAGGACTGGGAAGATAAG 60.240 46.154 0.00 0.00 0.00 1.73
76 77 5.608860 AGGATAAAGGACTGGGAAGATAAGG 59.391 44.000 0.00 0.00 0.00 2.69
77 78 3.653835 AAAGGACTGGGAAGATAAGGC 57.346 47.619 0.00 0.00 0.00 4.35
78 79 2.270434 AGGACTGGGAAGATAAGGCA 57.730 50.000 0.00 0.00 0.00 4.75
79 80 2.781667 AGGACTGGGAAGATAAGGCAT 58.218 47.619 0.00 0.00 0.00 4.40
80 81 2.441001 AGGACTGGGAAGATAAGGCATG 59.559 50.000 0.00 0.00 0.00 4.06
81 82 2.173569 GGACTGGGAAGATAAGGCATGT 59.826 50.000 0.00 0.00 0.00 3.21
82 83 3.209410 GACTGGGAAGATAAGGCATGTG 58.791 50.000 0.00 0.00 0.00 3.21
83 84 2.578021 ACTGGGAAGATAAGGCATGTGT 59.422 45.455 0.00 0.00 0.00 3.72
84 85 2.947652 CTGGGAAGATAAGGCATGTGTG 59.052 50.000 0.00 0.00 0.00 3.82
85 86 2.301346 GGGAAGATAAGGCATGTGTGG 58.699 52.381 0.00 0.00 0.00 4.17
86 87 2.092429 GGGAAGATAAGGCATGTGTGGA 60.092 50.000 0.00 0.00 0.00 4.02
87 88 3.209410 GGAAGATAAGGCATGTGTGGAG 58.791 50.000 0.00 0.00 0.00 3.86
88 89 3.370953 GGAAGATAAGGCATGTGTGGAGT 60.371 47.826 0.00 0.00 0.00 3.85
89 90 3.272574 AGATAAGGCATGTGTGGAGTG 57.727 47.619 0.00 0.00 0.00 3.51
90 91 1.672881 GATAAGGCATGTGTGGAGTGC 59.327 52.381 0.00 0.00 38.12 4.40
91 92 0.673333 TAAGGCATGTGTGGAGTGCG 60.673 55.000 0.00 0.00 39.69 5.34
92 93 2.358615 GGCATGTGTGGAGTGCGA 60.359 61.111 0.00 0.00 39.69 5.10
93 94 1.746615 GGCATGTGTGGAGTGCGAT 60.747 57.895 0.00 0.00 39.69 4.58
94 95 1.426621 GCATGTGTGGAGTGCGATG 59.573 57.895 0.00 0.00 0.00 3.84
95 96 1.426621 CATGTGTGGAGTGCGATGC 59.573 57.895 0.00 0.00 0.00 3.91
96 97 1.022982 CATGTGTGGAGTGCGATGCT 61.023 55.000 0.00 0.00 0.00 3.79
97 98 0.536724 ATGTGTGGAGTGCGATGCTA 59.463 50.000 0.00 0.00 0.00 3.49
98 99 0.389817 TGTGTGGAGTGCGATGCTAC 60.390 55.000 0.00 0.00 0.00 3.58
99 100 0.108615 GTGTGGAGTGCGATGCTACT 60.109 55.000 0.00 0.00 0.00 2.57
100 101 0.108662 TGTGGAGTGCGATGCTACTG 60.109 55.000 0.00 0.00 0.00 2.74
101 102 1.153568 TGGAGTGCGATGCTACTGC 60.154 57.895 0.00 0.00 36.03 4.40
102 103 1.142748 GGAGTGCGATGCTACTGCT 59.857 57.895 0.00 0.00 40.48 4.24
103 104 1.150567 GGAGTGCGATGCTACTGCTG 61.151 60.000 0.00 0.00 40.48 4.41
104 105 0.459237 GAGTGCGATGCTACTGCTGT 60.459 55.000 0.66 0.66 40.48 4.40
105 106 0.738762 AGTGCGATGCTACTGCTGTG 60.739 55.000 6.48 0.00 40.48 3.66
106 107 1.016130 GTGCGATGCTACTGCTGTGT 61.016 55.000 6.48 0.00 40.48 3.72
107 108 1.015607 TGCGATGCTACTGCTGTGTG 61.016 55.000 6.48 0.64 40.48 3.82
108 109 1.712081 CGATGCTACTGCTGTGTGC 59.288 57.895 6.48 10.89 40.48 4.57
109 110 0.738762 CGATGCTACTGCTGTGTGCT 60.739 55.000 18.60 8.91 43.37 4.40
110 111 0.725686 GATGCTACTGCTGTGTGCTG 59.274 55.000 18.60 0.00 44.70 4.41
119 120 3.754955 CTGCTGTGTGCTGTATGATTTG 58.245 45.455 0.00 0.00 43.37 2.32
120 121 2.488937 TGCTGTGTGCTGTATGATTTGG 59.511 45.455 0.00 0.00 43.37 3.28
121 122 2.749076 GCTGTGTGCTGTATGATTTGGA 59.251 45.455 0.00 0.00 38.95 3.53
122 123 3.379372 GCTGTGTGCTGTATGATTTGGAT 59.621 43.478 0.00 0.00 38.95 3.41
123 124 4.732647 GCTGTGTGCTGTATGATTTGGATG 60.733 45.833 0.00 0.00 38.95 3.51
124 125 3.695556 TGTGTGCTGTATGATTTGGATGG 59.304 43.478 0.00 0.00 0.00 3.51
125 126 3.947196 GTGTGCTGTATGATTTGGATGGA 59.053 43.478 0.00 0.00 0.00 3.41
126 127 4.581824 GTGTGCTGTATGATTTGGATGGAT 59.418 41.667 0.00 0.00 0.00 3.41
127 128 4.823442 TGTGCTGTATGATTTGGATGGATC 59.177 41.667 0.00 0.00 0.00 3.36
136 137 4.527426 GGATGGATCCAATGGCCC 57.473 61.111 20.67 11.18 46.38 5.80
137 138 1.604593 GGATGGATCCAATGGCCCG 60.605 63.158 20.67 0.00 46.38 6.13
138 139 2.203538 ATGGATCCAATGGCCCGC 60.204 61.111 20.67 0.00 0.00 6.13
139 140 4.873810 TGGATCCAATGGCCCGCG 62.874 66.667 13.46 0.00 0.00 6.46
156 157 4.736896 GCGAGACCGGCCGAAGTT 62.737 66.667 30.73 9.15 36.06 2.66
157 158 2.048503 CGAGACCGGCCGAAGTTT 60.049 61.111 30.73 12.58 0.00 2.66
158 159 2.092882 CGAGACCGGCCGAAGTTTC 61.093 63.158 30.73 19.90 0.00 2.78
159 160 1.005394 GAGACCGGCCGAAGTTTCA 60.005 57.895 30.73 0.00 0.00 2.69
160 161 1.004918 AGACCGGCCGAAGTTTCAG 60.005 57.895 30.73 9.82 0.00 3.02
161 162 2.668550 ACCGGCCGAAGTTTCAGC 60.669 61.111 30.73 0.00 0.00 4.26
162 163 3.431725 CCGGCCGAAGTTTCAGCC 61.432 66.667 30.73 8.71 45.24 4.85
164 165 3.431725 GGCCGAAGTTTCAGCCGG 61.432 66.667 0.00 0.00 40.58 6.13
165 166 2.668550 GCCGAAGTTTCAGCCGGT 60.669 61.111 1.90 0.00 43.51 5.28
166 167 2.677979 GCCGAAGTTTCAGCCGGTC 61.678 63.158 1.90 0.00 43.51 4.79
167 168 2.033194 CCGAAGTTTCAGCCGGTCC 61.033 63.158 1.90 0.00 37.40 4.46
168 169 2.380410 CGAAGTTTCAGCCGGTCCG 61.380 63.158 3.60 3.60 0.00 4.79
169 170 2.668550 AAGTTTCAGCCGGTCCGC 60.669 61.111 5.50 1.24 0.00 5.54
170 171 4.699522 AGTTTCAGCCGGTCCGCC 62.700 66.667 5.50 0.00 0.00 6.13
180 181 2.822701 GGTCCGCCGGATGGAAAC 60.823 66.667 10.04 9.73 37.23 2.78
221 222 0.321298 ACAGTACCACCAATCGCACC 60.321 55.000 0.00 0.00 0.00 5.01
223 224 2.104253 GTACCACCAATCGCACCGG 61.104 63.158 0.00 0.00 0.00 5.28
265 266 3.575687 CCTTGAGCAATCTTGGGAAGTTT 59.424 43.478 0.00 0.00 0.00 2.66
266 267 4.553323 CTTGAGCAATCTTGGGAAGTTTG 58.447 43.478 0.00 0.00 39.86 2.93
299 304 4.473444 AGTCTTGAGCAATCTTGGGAAAA 58.527 39.130 0.00 0.00 0.00 2.29
311 316 5.608798 TCTTGGGAAAATTTTAGGGGAGA 57.391 39.130 2.75 2.01 0.00 3.71
314 319 3.012388 TGGGAAAATTTTAGGGGAGAGGG 59.988 47.826 2.75 0.00 0.00 4.30
315 320 3.031736 GGAAAATTTTAGGGGAGAGGGC 58.968 50.000 2.75 0.00 0.00 5.19
317 322 1.296002 AATTTTAGGGGAGAGGGCGT 58.704 50.000 0.00 0.00 0.00 5.68
326 339 1.671901 GGAGAGGGCGTGGAGAGAAG 61.672 65.000 0.00 0.00 0.00 2.85
334 347 2.742589 GGCGTGGAGAGAAGTTTTTAGG 59.257 50.000 0.00 0.00 0.00 2.69
363 376 8.501580 GGTTACGTTAGAATTTTGTAGCTTCTT 58.498 33.333 0.00 0.00 31.89 2.52
373 386 4.537135 TTGTAGCTTCTTCCTAGGTGTG 57.463 45.455 9.08 0.37 0.00 3.82
382 395 4.890988 TCTTCCTAGGTGTGGGATTATCA 58.109 43.478 9.08 0.00 32.34 2.15
386 399 5.394738 TCCTAGGTGTGGGATTATCAGTAG 58.605 45.833 9.08 0.00 0.00 2.57
394 407 5.880332 TGTGGGATTATCAGTAGCAAAACTC 59.120 40.000 0.00 0.00 0.00 3.01
406 420 7.497579 TCAGTAGCAAAACTCAAGACAAATACA 59.502 33.333 0.00 0.00 0.00 2.29
412 426 7.064016 GCAAAACTCAAGACAAATACAAACCAA 59.936 33.333 0.00 0.00 0.00 3.67
417 431 5.982516 TCAAGACAAATACAAACCAACATGC 59.017 36.000 0.00 0.00 0.00 4.06
434 448 2.107950 TGCGGTTGAATGGTTAGGAG 57.892 50.000 0.00 0.00 0.00 3.69
435 449 1.626321 TGCGGTTGAATGGTTAGGAGA 59.374 47.619 0.00 0.00 0.00 3.71
436 450 2.039216 TGCGGTTGAATGGTTAGGAGAA 59.961 45.455 0.00 0.00 0.00 2.87
437 451 3.279434 GCGGTTGAATGGTTAGGAGAAT 58.721 45.455 0.00 0.00 0.00 2.40
445 459 7.392766 TGAATGGTTAGGAGAATGATGGTAT 57.607 36.000 0.00 0.00 0.00 2.73
448 462 5.476983 TGGTTAGGAGAATGATGGTATCCT 58.523 41.667 0.00 0.00 42.89 3.24
455 469 0.979665 ATGATGGTATCCTCTGCCCG 59.020 55.000 0.00 0.00 0.00 6.13
456 470 0.398522 TGATGGTATCCTCTGCCCGT 60.399 55.000 0.00 0.00 0.00 5.28
457 471 0.759346 GATGGTATCCTCTGCCCGTT 59.241 55.000 0.00 0.00 0.00 4.44
458 472 0.469917 ATGGTATCCTCTGCCCGTTG 59.530 55.000 0.00 0.00 0.00 4.10
459 473 1.523938 GGTATCCTCTGCCCGTTGC 60.524 63.158 0.00 0.00 41.77 4.17
460 474 1.522569 GTATCCTCTGCCCGTTGCT 59.477 57.895 0.00 0.00 42.00 3.91
461 475 0.530870 GTATCCTCTGCCCGTTGCTC 60.531 60.000 0.00 0.00 42.00 4.26
464 478 1.377725 CCTCTGCCCGTTGCTCATT 60.378 57.895 0.00 0.00 42.00 2.57
474 488 3.125316 CCCGTTGCTCATTAGAGTTCAAC 59.875 47.826 0.00 0.00 44.00 3.18
475 489 3.997021 CCGTTGCTCATTAGAGTTCAACT 59.003 43.478 0.00 0.00 44.00 3.16
476 490 4.092091 CCGTTGCTCATTAGAGTTCAACTC 59.908 45.833 9.78 9.78 45.38 3.01
492 506 9.092876 GAGTTCAACTCTCAGACTTAATATTGG 57.907 37.037 10.55 0.00 41.88 3.16
493 507 8.598041 AGTTCAACTCTCAGACTTAATATTGGT 58.402 33.333 0.00 0.00 0.00 3.67
494 508 8.660373 GTTCAACTCTCAGACTTAATATTGGTG 58.340 37.037 0.00 0.00 0.00 4.17
495 509 6.818644 TCAACTCTCAGACTTAATATTGGTGC 59.181 38.462 0.00 0.00 0.00 5.01
496 510 6.552445 ACTCTCAGACTTAATATTGGTGCT 57.448 37.500 0.00 0.00 0.00 4.40
497 511 6.578023 ACTCTCAGACTTAATATTGGTGCTC 58.422 40.000 0.00 0.00 0.00 4.26
498 512 5.592054 TCTCAGACTTAATATTGGTGCTCG 58.408 41.667 0.00 0.00 0.00 5.03
499 513 5.127194 TCTCAGACTTAATATTGGTGCTCGT 59.873 40.000 0.00 0.00 0.00 4.18
500 514 6.320418 TCTCAGACTTAATATTGGTGCTCGTA 59.680 38.462 0.00 0.00 0.00 3.43
501 515 7.014326 TCTCAGACTTAATATTGGTGCTCGTAT 59.986 37.037 0.00 0.00 0.00 3.06
502 516 7.497595 TCAGACTTAATATTGGTGCTCGTATT 58.502 34.615 0.00 0.00 0.00 1.89
503 517 7.985184 TCAGACTTAATATTGGTGCTCGTATTT 59.015 33.333 0.00 0.00 0.00 1.40
504 518 8.612619 CAGACTTAATATTGGTGCTCGTATTTT 58.387 33.333 0.00 0.00 0.00 1.82
505 519 9.174166 AGACTTAATATTGGTGCTCGTATTTTT 57.826 29.630 0.00 0.00 0.00 1.94
535 549 1.863454 AGATCTTTCGATGATGTGCGC 59.137 47.619 0.00 0.00 0.00 6.09
537 551 2.577449 TCTTTCGATGATGTGCGCTA 57.423 45.000 9.73 0.00 0.00 4.26
538 552 2.193447 TCTTTCGATGATGTGCGCTAC 58.807 47.619 9.73 5.95 0.00 3.58
539 553 1.926510 CTTTCGATGATGTGCGCTACA 59.073 47.619 9.73 12.14 44.87 2.74
540 554 1.559831 TTCGATGATGTGCGCTACAG 58.440 50.000 9.73 0.00 43.80 2.74
541 555 0.738389 TCGATGATGTGCGCTACAGA 59.262 50.000 9.73 3.19 43.80 3.41
542 556 1.126890 CGATGATGTGCGCTACAGAG 58.873 55.000 9.73 0.00 43.80 3.35
544 558 2.796032 CGATGATGTGCGCTACAGAGAA 60.796 50.000 9.73 0.00 43.80 2.87
546 560 1.134995 TGATGTGCGCTACAGAGAAGG 60.135 52.381 9.73 0.00 43.80 3.46
547 561 0.898320 ATGTGCGCTACAGAGAAGGT 59.102 50.000 9.73 0.00 43.80 3.50
549 563 0.038159 GTGCGCTACAGAGAAGGTGT 60.038 55.000 9.73 0.00 0.00 4.16
551 565 0.528470 GCGCTACAGAGAAGGTGTCT 59.472 55.000 0.00 0.00 40.25 3.41
552 566 1.734047 GCGCTACAGAGAAGGTGTCTG 60.734 57.143 0.00 1.15 45.94 3.51
556 570 3.223661 CAGAGAAGGTGTCTGTGGC 57.776 57.895 0.00 0.00 42.63 5.01
557 571 0.394192 CAGAGAAGGTGTCTGTGGCA 59.606 55.000 0.00 0.00 42.63 4.92
574 588 4.159321 TGTGGCAACTTTGTCAATCTCAAA 59.841 37.500 0.00 0.00 45.39 2.69
584 598 7.864379 ACTTTGTCAATCTCAAAATGATGTGTC 59.136 33.333 0.00 0.00 34.96 3.67
589 603 3.002791 TCTCAAAATGATGTGTCGGCTC 58.997 45.455 0.00 0.00 0.00 4.70
598 612 0.171231 TGTGTCGGCTCAATCTCTCG 59.829 55.000 0.00 0.00 0.00 4.04
599 613 0.452184 GTGTCGGCTCAATCTCTCGA 59.548 55.000 0.00 0.00 0.00 4.04
600 614 1.135373 GTGTCGGCTCAATCTCTCGAA 60.135 52.381 0.00 0.00 0.00 3.71
608 622 1.133216 TCAATCTCTCGAAGGTGCTCG 59.867 52.381 0.00 0.00 40.25 5.03
611 625 1.370609 TCTCTCGAAGGTGCTCGTAG 58.629 55.000 0.00 0.00 39.84 3.51
613 627 0.035725 TCTCGAAGGTGCTCGTAGGA 60.036 55.000 0.00 0.00 39.84 2.94
619 633 2.335316 AGGTGCTCGTAGGAGTAGAG 57.665 55.000 13.65 0.00 42.53 2.43
623 637 2.096174 GTGCTCGTAGGAGTAGAGTGTG 59.904 54.545 13.65 0.00 42.53 3.82
624 638 1.064357 GCTCGTAGGAGTAGAGTGTGC 59.936 57.143 13.65 0.00 42.53 4.57
628 642 2.796383 CGTAGGAGTAGAGTGTGCATGC 60.796 54.545 11.82 11.82 0.00 4.06
631 645 1.272781 GAGTAGAGTGTGCATGCGTC 58.727 55.000 14.09 9.43 0.00 5.19
633 647 1.153842 TAGAGTGTGCATGCGTCCG 60.154 57.895 14.09 0.00 0.00 4.79
641 655 0.174617 TGCATGCGTCCGTTCATAGA 59.825 50.000 14.09 0.00 0.00 1.98
655 669 8.178964 GTCCGTTCATAGAGATGAGTATATGTC 58.821 40.741 0.00 0.00 43.03 3.06
656 670 7.337184 TCCGTTCATAGAGATGAGTATATGTCC 59.663 40.741 0.00 0.00 43.03 4.02
662 676 9.331282 CATAGAGATGAGTATATGTCCGTATGA 57.669 37.037 0.00 0.00 34.73 2.15
664 678 8.445275 AGAGATGAGTATATGTCCGTATGATC 57.555 38.462 0.00 0.00 0.00 2.92
668 682 7.938140 TGAGTATATGTCCGTATGATCATGA 57.062 36.000 18.72 0.00 0.00 3.07
692 732 6.575162 AAAAATAACTCAGGGCAAGTAGTG 57.425 37.500 0.00 0.00 0.00 2.74
693 733 5.499004 AAATAACTCAGGGCAAGTAGTGA 57.501 39.130 0.00 0.00 0.00 3.41
695 735 3.857157 AACTCAGGGCAAGTAGTGAAA 57.143 42.857 0.00 0.00 0.00 2.69
697 737 2.039084 ACTCAGGGCAAGTAGTGAAAGG 59.961 50.000 0.00 0.00 0.00 3.11
698 738 2.303022 CTCAGGGCAAGTAGTGAAAGGA 59.697 50.000 0.00 0.00 0.00 3.36
699 739 2.038557 TCAGGGCAAGTAGTGAAAGGAC 59.961 50.000 0.00 0.00 0.00 3.85
700 740 1.002087 AGGGCAAGTAGTGAAAGGACG 59.998 52.381 0.00 0.00 0.00 4.79
701 741 0.796927 GGCAAGTAGTGAAAGGACGC 59.203 55.000 0.00 0.00 0.00 5.19
740 785 0.602060 TGCGCAATCCAGCATTTTCA 59.398 45.000 8.16 0.00 38.59 2.69
865 915 3.197333 CACAGATCCAAGATCCAGAGTGT 59.803 47.826 0.99 0.00 0.00 3.55
866 916 3.197333 ACAGATCCAAGATCCAGAGTGTG 59.803 47.826 0.99 0.00 0.00 3.82
1740 1811 2.671070 CACCCAGTGGCGAATCCT 59.329 61.111 2.61 0.00 35.26 3.24
1914 1985 0.037877 AGCAGCATGGCTTCTCTGTT 59.962 50.000 0.00 0.00 42.71 3.16
1923 1994 1.271054 GGCTTCTCTGTTCTTCAGCCA 60.271 52.381 3.07 0.00 43.32 4.75
1987 6787 3.972107 GTGTACCAAGGTGACACGA 57.028 52.632 1.07 0.00 34.64 4.35
1988 6788 2.228138 GTGTACCAAGGTGACACGAA 57.772 50.000 1.07 0.00 34.64 3.85
2079 6886 5.234329 TGTTTCGATGTTCTGAACTTCTGAC 59.766 40.000 24.84 20.51 34.44 3.51
2108 6916 6.183810 TCGGAGACTGTACTAGATATTGGA 57.816 41.667 0.00 0.00 0.00 3.53
2109 6917 6.780901 TCGGAGACTGTACTAGATATTGGAT 58.219 40.000 0.00 0.00 0.00 3.41
2169 6977 6.457355 TGATTTTCATTTCTGGTTGGATGTG 58.543 36.000 0.00 0.00 0.00 3.21
2230 7038 5.299531 ACCCAGTTGCTAAGTCTTTTTCTTC 59.700 40.000 0.00 0.00 0.00 2.87
2238 7046 7.916552 TGCTAAGTCTTTTTCTTCTAACACAC 58.083 34.615 0.00 0.00 0.00 3.82
2249 7057 2.846193 TCTAACACACAAAGGAGCCAC 58.154 47.619 0.00 0.00 0.00 5.01
2260 7068 3.426568 GAGCCACCAAGCGTCAGC 61.427 66.667 0.00 0.00 45.58 4.26
2276 7084 4.370049 CGTCAGCTTCTCATTCATCTCAT 58.630 43.478 0.00 0.00 0.00 2.90
2281 7089 5.630264 CAGCTTCTCATTCATCTCATAGACG 59.370 44.000 0.00 0.00 0.00 4.18
2292 7100 7.277174 TCATCTCATAGACGATGTACAACAT 57.723 36.000 0.00 0.00 42.43 2.71
2295 7103 6.495706 TCTCATAGACGATGTACAACATGTC 58.504 40.000 0.00 5.88 39.27 3.06
2305 7113 6.347321 CGATGTACAACATGTCTTACAAAGCA 60.347 38.462 18.47 3.07 39.27 3.91
2306 7114 6.055231 TGTACAACATGTCTTACAAAGCAC 57.945 37.500 14.23 0.00 0.00 4.40
2307 7115 4.568152 ACAACATGTCTTACAAAGCACC 57.432 40.909 0.00 0.00 0.00 5.01
2342 7151 3.243839 TGAAAGAGATTGCACAAAAGGGC 60.244 43.478 0.00 0.00 0.00 5.19
2365 7174 5.510009 GCAAGAAGTAGGTATAGCTTCTCCC 60.510 48.000 10.19 6.34 45.51 4.30
2369 7178 4.475345 AGTAGGTATAGCTTCTCCCTGTG 58.525 47.826 10.19 0.00 0.00 3.66
2409 7218 4.056125 CACTCTGACGCTCCCGCA 62.056 66.667 0.00 0.00 38.22 5.69
2410 7219 4.057428 ACTCTGACGCTCCCGCAC 62.057 66.667 0.00 0.00 38.22 5.34
2465 7277 3.243128 GCCGTCTTGCCTCCTTAAA 57.757 52.632 0.00 0.00 0.00 1.52
2471 7283 2.229062 GTCTTGCCTCCTTAAACCTTGC 59.771 50.000 0.00 0.00 0.00 4.01
2473 7285 0.608035 TGCCTCCTTAAACCTTGCCG 60.608 55.000 0.00 0.00 0.00 5.69
2480 7292 0.031857 TTAAACCTTGCCGTCGTCGA 59.968 50.000 2.98 0.00 39.71 4.20
2542 7354 2.791868 GGCTCCTTCTCCCTCTCGC 61.792 68.421 0.00 0.00 0.00 5.03
2552 7364 3.753434 CCTCTCGCGTGGCTGAGT 61.753 66.667 5.77 0.00 33.50 3.41
2560 7372 1.648720 CGTGGCTGAGTTTGGTGTG 59.351 57.895 0.00 0.00 0.00 3.82
2562 7374 1.152777 TGGCTGAGTTTGGTGTGGG 60.153 57.895 0.00 0.00 0.00 4.61
2629 7441 4.263572 TTGGTGGTGACTGGCGGG 62.264 66.667 0.00 0.00 0.00 6.13
2643 7455 2.267961 CGGGGGTGCTAAGTGGTC 59.732 66.667 0.00 0.00 0.00 4.02
2647 7459 2.260434 GGTGCTAAGTGGTCGCGA 59.740 61.111 3.71 3.71 0.00 5.87
2665 7477 2.126307 CGGTGTCGTGGAGAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
2676 7488 4.254709 AGAGCTGCACGGTGGCAA 62.255 61.111 10.60 0.00 44.40 4.52
2696 7508 2.046892 GTGCGTGCTGGAGATGGT 60.047 61.111 0.00 0.00 0.00 3.55
2697 7509 2.046988 TGCGTGCTGGAGATGGTG 60.047 61.111 0.00 0.00 0.00 4.17
2701 7513 0.518636 CGTGCTGGAGATGGTGTTTG 59.481 55.000 0.00 0.00 0.00 2.93
2704 7516 1.133823 TGCTGGAGATGGTGTTTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
2705 7517 1.267806 GCTGGAGATGGTGTTTGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
2708 7520 2.172505 TGGAGATGGTGTTTGTGTGTCT 59.827 45.455 0.00 0.00 0.00 3.41
2709 7521 3.214328 GGAGATGGTGTTTGTGTGTCTT 58.786 45.455 0.00 0.00 0.00 3.01
2710 7522 3.251004 GGAGATGGTGTTTGTGTGTCTTC 59.749 47.826 0.00 0.00 0.00 2.87
2711 7523 2.872245 AGATGGTGTTTGTGTGTCTTCG 59.128 45.455 0.00 0.00 0.00 3.79
2713 7525 0.028902 GGTGTTTGTGTGTCTTCGGC 59.971 55.000 0.00 0.00 0.00 5.54
2714 7526 0.730265 GTGTTTGTGTGTCTTCGGCA 59.270 50.000 0.00 0.00 0.00 5.69
2715 7527 0.730265 TGTTTGTGTGTCTTCGGCAC 59.270 50.000 0.00 0.00 37.37 5.01
2740 7552 1.142531 TGCTAGATCTGGCAGTGCG 59.857 57.895 27.88 0.00 42.20 5.34
2775 7587 4.421479 CCGCTGGTTCGAGCTCGT 62.421 66.667 33.33 0.00 40.80 4.18
2834 7646 1.454847 GCAGGGTTTGGTGGTCACA 60.455 57.895 3.40 0.00 0.00 3.58
2840 7652 0.040425 GTTTGGTGGTCACATGCGTC 60.040 55.000 3.40 0.00 0.00 5.19
2844 7656 2.738139 TGGTCACATGCGTCGCTG 60.738 61.111 19.50 15.68 0.00 5.18
2851 7663 3.440415 ATGCGTCGCTGACTCCGA 61.440 61.111 19.50 0.00 0.00 4.55
2864 7676 2.290323 TGACTCCGATCAGACACTCTCA 60.290 50.000 0.00 0.00 0.00 3.27
2866 7678 1.065401 CTCCGATCAGACACTCTCAGC 59.935 57.143 0.00 0.00 0.00 4.26
2882 7694 2.659610 GCTCTGGCTTCTGGTCGT 59.340 61.111 0.00 0.00 35.22 4.34
2887 7699 2.142357 CTGGCTTCTGGTCGTCGACA 62.142 60.000 25.64 11.66 33.68 4.35
2889 7701 1.007734 GCTTCTGGTCGTCGACACA 60.008 57.895 25.64 18.87 33.68 3.72
2968 7780 4.715523 GGCGGCTTGGTGGCTACA 62.716 66.667 0.00 0.00 39.32 2.74
2969 7781 2.438434 GCGGCTTGGTGGCTACAT 60.438 61.111 1.52 0.00 39.32 2.29
2970 7782 2.764314 GCGGCTTGGTGGCTACATG 61.764 63.158 1.52 0.00 39.32 3.21
2971 7783 2.114670 CGGCTTGGTGGCTACATGG 61.115 63.158 1.52 0.00 39.32 3.66
2972 7784 1.754234 GGCTTGGTGGCTACATGGG 60.754 63.158 1.52 0.00 38.32 4.00
2973 7785 1.000896 GCTTGGTGGCTACATGGGT 60.001 57.895 1.52 0.00 0.00 4.51
2974 7786 0.611896 GCTTGGTGGCTACATGGGTT 60.612 55.000 1.52 0.00 0.00 4.11
2975 7787 1.176527 CTTGGTGGCTACATGGGTTG 58.823 55.000 1.52 0.00 0.00 3.77
2976 7788 0.480690 TTGGTGGCTACATGGGTTGT 59.519 50.000 1.52 0.00 42.62 3.32
2977 7789 0.251121 TGGTGGCTACATGGGTTGTG 60.251 55.000 1.52 0.00 39.48 3.33
2978 7790 0.251165 GGTGGCTACATGGGTTGTGT 60.251 55.000 1.52 0.00 39.48 3.72
2979 7791 1.165270 GTGGCTACATGGGTTGTGTC 58.835 55.000 0.00 0.00 39.48 3.67
2980 7792 0.321210 TGGCTACATGGGTTGTGTCG 60.321 55.000 0.00 0.00 39.48 4.35
2981 7793 1.024579 GGCTACATGGGTTGTGTCGG 61.025 60.000 0.00 0.00 39.48 4.79
2982 7794 1.024579 GCTACATGGGTTGTGTCGGG 61.025 60.000 0.00 0.00 39.48 5.14
2983 7795 1.003112 TACATGGGTTGTGTCGGGC 60.003 57.895 0.00 0.00 39.48 6.13
2984 7796 2.789845 TACATGGGTTGTGTCGGGCG 62.790 60.000 0.00 0.00 39.48 6.13
2988 7800 4.101790 GGTTGTGTCGGGCGCATG 62.102 66.667 10.83 0.00 37.45 4.06
2989 7801 4.101790 GTTGTGTCGGGCGCATGG 62.102 66.667 10.83 0.00 37.45 3.66
2990 7802 4.634703 TTGTGTCGGGCGCATGGT 62.635 61.111 10.83 0.00 37.45 3.55
2991 7803 3.241515 TTGTGTCGGGCGCATGGTA 62.242 57.895 10.83 0.00 37.45 3.25
2992 7804 2.890474 GTGTCGGGCGCATGGTAG 60.890 66.667 10.83 0.00 0.00 3.18
2993 7805 4.830765 TGTCGGGCGCATGGTAGC 62.831 66.667 10.83 0.00 0.00 3.58
3001 7813 2.817834 GCATGGTAGCGGCGTGAA 60.818 61.111 9.37 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.129913 ATACCGTAGACACCGCCGC 62.130 63.158 0.00 0.00 0.00 6.53
8 9 1.298863 CATACCGTAGACACCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
9 10 1.590792 GCATACCGTAGACACCGCC 60.591 63.158 0.00 0.00 0.00 6.13
10 11 1.942712 CGCATACCGTAGACACCGC 60.943 63.158 0.00 0.00 0.00 5.68
11 12 4.297071 CGCATACCGTAGACACCG 57.703 61.111 0.00 0.00 0.00 4.94
20 21 4.805231 TCCCGCACACGCATACCG 62.805 66.667 0.00 0.00 44.21 4.02
21 22 2.644555 ATCTCCCGCACACGCATACC 62.645 60.000 0.00 0.00 38.40 2.73
22 23 0.031585 TATCTCCCGCACACGCATAC 59.968 55.000 0.00 0.00 38.40 2.39
23 24 0.747852 TTATCTCCCGCACACGCATA 59.252 50.000 0.00 0.00 38.40 3.14
24 25 0.107897 TTTATCTCCCGCACACGCAT 60.108 50.000 0.00 0.00 38.40 4.73
25 26 0.739462 CTTTATCTCCCGCACACGCA 60.739 55.000 0.00 0.00 38.40 5.24
26 27 0.739813 ACTTTATCTCCCGCACACGC 60.740 55.000 0.00 0.00 38.22 5.34
27 28 1.393539 CAACTTTATCTCCCGCACACG 59.606 52.381 0.00 0.00 39.67 4.49
28 29 1.130561 GCAACTTTATCTCCCGCACAC 59.869 52.381 0.00 0.00 0.00 3.82
29 30 1.448985 GCAACTTTATCTCCCGCACA 58.551 50.000 0.00 0.00 0.00 4.57
30 31 0.373716 CGCAACTTTATCTCCCGCAC 59.626 55.000 0.00 0.00 0.00 5.34
31 32 0.742990 CCGCAACTTTATCTCCCGCA 60.743 55.000 0.00 0.00 0.00 5.69
32 33 1.436983 CCCGCAACTTTATCTCCCGC 61.437 60.000 0.00 0.00 0.00 6.13
33 34 0.177141 TCCCGCAACTTTATCTCCCG 59.823 55.000 0.00 0.00 0.00 5.14
34 35 1.475213 CCTCCCGCAACTTTATCTCCC 60.475 57.143 0.00 0.00 0.00 4.30
35 36 1.485066 TCCTCCCGCAACTTTATCTCC 59.515 52.381 0.00 0.00 0.00 3.71
36 37 2.981859 TCCTCCCGCAACTTTATCTC 57.018 50.000 0.00 0.00 0.00 2.75
37 38 5.367945 TTTATCCTCCCGCAACTTTATCT 57.632 39.130 0.00 0.00 0.00 1.98
38 39 4.515567 CCTTTATCCTCCCGCAACTTTATC 59.484 45.833 0.00 0.00 0.00 1.75
39 40 4.165372 TCCTTTATCCTCCCGCAACTTTAT 59.835 41.667 0.00 0.00 0.00 1.40
40 41 3.520317 TCCTTTATCCTCCCGCAACTTTA 59.480 43.478 0.00 0.00 0.00 1.85
41 42 2.307686 TCCTTTATCCTCCCGCAACTTT 59.692 45.455 0.00 0.00 0.00 2.66
42 43 1.913419 TCCTTTATCCTCCCGCAACTT 59.087 47.619 0.00 0.00 0.00 2.66
43 44 1.209747 GTCCTTTATCCTCCCGCAACT 59.790 52.381 0.00 0.00 0.00 3.16
44 45 1.209747 AGTCCTTTATCCTCCCGCAAC 59.790 52.381 0.00 0.00 0.00 4.17
45 46 1.209504 CAGTCCTTTATCCTCCCGCAA 59.790 52.381 0.00 0.00 0.00 4.85
46 47 0.830648 CAGTCCTTTATCCTCCCGCA 59.169 55.000 0.00 0.00 0.00 5.69
47 48 0.106894 CCAGTCCTTTATCCTCCCGC 59.893 60.000 0.00 0.00 0.00 6.13
48 49 0.759346 CCCAGTCCTTTATCCTCCCG 59.241 60.000 0.00 0.00 0.00 5.14
49 50 2.191981 TCCCAGTCCTTTATCCTCCC 57.808 55.000 0.00 0.00 0.00 4.30
50 51 3.385115 TCTTCCCAGTCCTTTATCCTCC 58.615 50.000 0.00 0.00 0.00 4.30
51 52 6.239743 CCTTATCTTCCCAGTCCTTTATCCTC 60.240 46.154 0.00 0.00 0.00 3.71
52 53 5.608860 CCTTATCTTCCCAGTCCTTTATCCT 59.391 44.000 0.00 0.00 0.00 3.24
53 54 5.746361 GCCTTATCTTCCCAGTCCTTTATCC 60.746 48.000 0.00 0.00 0.00 2.59
54 55 5.163195 TGCCTTATCTTCCCAGTCCTTTATC 60.163 44.000 0.00 0.00 0.00 1.75
55 56 4.726825 TGCCTTATCTTCCCAGTCCTTTAT 59.273 41.667 0.00 0.00 0.00 1.40
56 57 4.108570 TGCCTTATCTTCCCAGTCCTTTA 58.891 43.478 0.00 0.00 0.00 1.85
57 58 2.919602 TGCCTTATCTTCCCAGTCCTTT 59.080 45.455 0.00 0.00 0.00 3.11
58 59 2.562296 TGCCTTATCTTCCCAGTCCTT 58.438 47.619 0.00 0.00 0.00 3.36
59 60 2.270434 TGCCTTATCTTCCCAGTCCT 57.730 50.000 0.00 0.00 0.00 3.85
60 61 2.173569 ACATGCCTTATCTTCCCAGTCC 59.826 50.000 0.00 0.00 0.00 3.85
61 62 3.209410 CACATGCCTTATCTTCCCAGTC 58.791 50.000 0.00 0.00 0.00 3.51
62 63 2.578021 ACACATGCCTTATCTTCCCAGT 59.422 45.455 0.00 0.00 0.00 4.00
63 64 2.947652 CACACATGCCTTATCTTCCCAG 59.052 50.000 0.00 0.00 0.00 4.45
64 65 2.357050 CCACACATGCCTTATCTTCCCA 60.357 50.000 0.00 0.00 0.00 4.37
65 66 2.092429 TCCACACATGCCTTATCTTCCC 60.092 50.000 0.00 0.00 0.00 3.97
66 67 3.209410 CTCCACACATGCCTTATCTTCC 58.791 50.000 0.00 0.00 0.00 3.46
67 68 3.624861 CACTCCACACATGCCTTATCTTC 59.375 47.826 0.00 0.00 0.00 2.87
68 69 3.614092 CACTCCACACATGCCTTATCTT 58.386 45.455 0.00 0.00 0.00 2.40
69 70 2.681976 GCACTCCACACATGCCTTATCT 60.682 50.000 0.00 0.00 33.06 1.98
70 71 1.672881 GCACTCCACACATGCCTTATC 59.327 52.381 0.00 0.00 33.06 1.75
71 72 1.755179 GCACTCCACACATGCCTTAT 58.245 50.000 0.00 0.00 33.06 1.73
72 73 0.673333 CGCACTCCACACATGCCTTA 60.673 55.000 0.00 0.00 35.91 2.69
73 74 1.968017 CGCACTCCACACATGCCTT 60.968 57.895 0.00 0.00 35.91 4.35
74 75 2.189191 ATCGCACTCCACACATGCCT 62.189 55.000 0.00 0.00 35.91 4.75
75 76 1.746615 ATCGCACTCCACACATGCC 60.747 57.895 0.00 0.00 35.91 4.40
76 77 1.426621 CATCGCACTCCACACATGC 59.573 57.895 0.00 0.00 35.96 4.06
77 78 1.022982 AGCATCGCACTCCACACATG 61.023 55.000 0.00 0.00 0.00 3.21
78 79 0.536724 TAGCATCGCACTCCACACAT 59.463 50.000 0.00 0.00 0.00 3.21
79 80 0.389817 GTAGCATCGCACTCCACACA 60.390 55.000 0.00 0.00 0.00 3.72
80 81 0.108615 AGTAGCATCGCACTCCACAC 60.109 55.000 0.00 0.00 0.00 3.82
81 82 0.108662 CAGTAGCATCGCACTCCACA 60.109 55.000 0.00 0.00 0.00 4.17
82 83 1.424493 GCAGTAGCATCGCACTCCAC 61.424 60.000 0.00 0.00 41.58 4.02
83 84 1.153568 GCAGTAGCATCGCACTCCA 60.154 57.895 0.00 0.00 41.58 3.86
84 85 1.142748 AGCAGTAGCATCGCACTCC 59.857 57.895 0.00 0.00 45.49 3.85
85 86 0.459237 ACAGCAGTAGCATCGCACTC 60.459 55.000 0.00 0.00 45.49 3.51
86 87 0.738762 CACAGCAGTAGCATCGCACT 60.739 55.000 0.00 0.00 45.49 4.40
87 88 1.016130 ACACAGCAGTAGCATCGCAC 61.016 55.000 0.00 0.00 45.49 5.34
88 89 1.015607 CACACAGCAGTAGCATCGCA 61.016 55.000 0.00 0.00 45.49 5.10
89 90 1.712081 CACACAGCAGTAGCATCGC 59.288 57.895 0.00 0.00 45.49 4.58
90 91 1.712081 GCACACAGCAGTAGCATCG 59.288 57.895 1.71 0.00 45.49 3.84
91 92 3.986787 ATACAGCACACAGCAGTAGCATC 60.987 47.826 8.24 0.00 46.44 3.91
92 93 2.093288 ATACAGCACACAGCAGTAGCAT 60.093 45.455 8.24 0.13 46.44 3.79
93 94 1.276138 ATACAGCACACAGCAGTAGCA 59.724 47.619 8.24 0.00 46.44 3.49
94 95 1.662629 CATACAGCACACAGCAGTAGC 59.337 52.381 0.00 0.00 46.44 3.58
95 96 3.236632 TCATACAGCACACAGCAGTAG 57.763 47.619 0.00 0.00 46.44 2.57
100 101 2.749076 TCCAAATCATACAGCACACAGC 59.251 45.455 0.00 0.00 46.19 4.40
101 102 4.201980 CCATCCAAATCATACAGCACACAG 60.202 45.833 0.00 0.00 0.00 3.66
102 103 3.695556 CCATCCAAATCATACAGCACACA 59.304 43.478 0.00 0.00 0.00 3.72
103 104 3.947196 TCCATCCAAATCATACAGCACAC 59.053 43.478 0.00 0.00 0.00 3.82
104 105 4.233632 TCCATCCAAATCATACAGCACA 57.766 40.909 0.00 0.00 0.00 4.57
105 106 4.217118 GGATCCATCCAAATCATACAGCAC 59.783 45.833 6.95 0.00 46.38 4.40
106 107 4.401022 GGATCCATCCAAATCATACAGCA 58.599 43.478 6.95 0.00 46.38 4.41
120 121 2.270986 GCGGGCCATTGGATCCATC 61.271 63.158 17.06 5.31 0.00 3.51
121 122 2.203538 GCGGGCCATTGGATCCAT 60.204 61.111 17.06 2.86 0.00 3.41
122 123 4.873810 CGCGGGCCATTGGATCCA 62.874 66.667 11.44 11.44 0.00 3.41
139 140 4.736896 AACTTCGGCCGGTCTCGC 62.737 66.667 27.83 0.00 34.56 5.03
140 141 2.048503 AAACTTCGGCCGGTCTCG 60.049 61.111 27.83 11.66 0.00 4.04
141 142 1.005394 TGAAACTTCGGCCGGTCTC 60.005 57.895 27.83 13.24 0.00 3.36
142 143 1.004918 CTGAAACTTCGGCCGGTCT 60.005 57.895 27.83 1.73 0.00 3.85
143 144 3.562635 CTGAAACTTCGGCCGGTC 58.437 61.111 27.83 15.11 0.00 4.79
149 150 2.033194 GGACCGGCTGAAACTTCGG 61.033 63.158 0.00 0.00 46.95 4.30
150 151 2.380410 CGGACCGGCTGAAACTTCG 61.380 63.158 5.81 0.00 0.00 3.79
151 152 2.677979 GCGGACCGGCTGAAACTTC 61.678 63.158 17.22 0.00 0.00 3.01
152 153 2.668550 GCGGACCGGCTGAAACTT 60.669 61.111 17.22 0.00 0.00 2.66
163 164 2.822701 GTTTCCATCCGGCGGACC 60.823 66.667 33.71 11.11 32.98 4.46
164 165 1.029947 AATGTTTCCATCCGGCGGAC 61.030 55.000 33.71 18.68 32.98 4.79
165 166 0.322997 AAATGTTTCCATCCGGCGGA 60.323 50.000 33.10 33.10 35.55 5.54
166 167 0.530288 AAAATGTTTCCATCCGGCGG 59.470 50.000 22.51 22.51 0.00 6.13
167 168 1.469079 GGAAAATGTTTCCATCCGGCG 60.469 52.381 13.67 0.00 38.45 6.46
168 169 1.824852 AGGAAAATGTTTCCATCCGGC 59.175 47.619 19.27 0.00 41.00 6.13
169 170 5.852282 ATAAGGAAAATGTTTCCATCCGG 57.148 39.130 19.27 0.00 41.00 5.14
183 184 9.754382 GGTACTGTCGTGATAAATATAAGGAAA 57.246 33.333 0.00 0.00 0.00 3.13
184 185 8.916062 TGGTACTGTCGTGATAAATATAAGGAA 58.084 33.333 0.00 0.00 0.00 3.36
185 186 8.355169 GTGGTACTGTCGTGATAAATATAAGGA 58.645 37.037 0.00 0.00 0.00 3.36
186 187 7.597743 GGTGGTACTGTCGTGATAAATATAAGG 59.402 40.741 0.00 0.00 0.00 2.69
187 188 8.139350 TGGTGGTACTGTCGTGATAAATATAAG 58.861 37.037 0.00 0.00 0.00 1.73
188 189 8.009622 TGGTGGTACTGTCGTGATAAATATAA 57.990 34.615 0.00 0.00 0.00 0.98
189 190 7.585579 TGGTGGTACTGTCGTGATAAATATA 57.414 36.000 0.00 0.00 0.00 0.86
190 191 6.474140 TGGTGGTACTGTCGTGATAAATAT 57.526 37.500 0.00 0.00 0.00 1.28
191 192 5.918426 TGGTGGTACTGTCGTGATAAATA 57.082 39.130 0.00 0.00 0.00 1.40
223 224 3.977244 CAGCCACAAACGGGGTGC 61.977 66.667 0.00 0.00 45.74 5.01
235 236 1.074405 AGATTGCTCAAGGTTCAGCCA 59.926 47.619 0.00 0.00 40.61 4.75
265 266 2.497675 GCTCAAGACTCACCTGTATCCA 59.502 50.000 0.00 0.00 0.00 3.41
266 267 2.497675 TGCTCAAGACTCACCTGTATCC 59.502 50.000 0.00 0.00 0.00 2.59
274 279 2.746362 CCCAAGATTGCTCAAGACTCAC 59.254 50.000 0.00 0.00 0.00 3.51
278 283 4.853924 TTTTCCCAAGATTGCTCAAGAC 57.146 40.909 0.00 0.00 0.00 3.01
283 288 6.108687 CCCTAAAATTTTCCCAAGATTGCTC 58.891 40.000 6.72 0.00 0.00 4.26
299 304 0.546598 CACGCCCTCTCCCCTAAAAT 59.453 55.000 0.00 0.00 0.00 1.82
311 316 0.765510 AAAACTTCTCTCCACGCCCT 59.234 50.000 0.00 0.00 0.00 5.19
314 319 3.660865 TCCTAAAAACTTCTCTCCACGC 58.339 45.455 0.00 0.00 0.00 5.34
315 320 4.691216 CCTTCCTAAAAACTTCTCTCCACG 59.309 45.833 0.00 0.00 0.00 4.94
317 322 5.906772 ACCTTCCTAAAAACTTCTCTCCA 57.093 39.130 0.00 0.00 0.00 3.86
334 347 8.026341 AGCTACAAAATTCTAACGTAACCTTC 57.974 34.615 0.00 0.00 0.00 3.46
363 376 4.280789 ACTGATAATCCCACACCTAGGA 57.719 45.455 17.98 0.00 36.36 2.94
373 386 6.823689 TCTTGAGTTTTGCTACTGATAATCCC 59.176 38.462 0.00 0.00 0.00 3.85
382 395 7.801716 TGTATTTGTCTTGAGTTTTGCTACT 57.198 32.000 0.00 0.00 0.00 2.57
386 399 6.533367 TGGTTTGTATTTGTCTTGAGTTTTGC 59.467 34.615 0.00 0.00 0.00 3.68
394 407 5.107913 CGCATGTTGGTTTGTATTTGTCTTG 60.108 40.000 0.00 0.00 0.00 3.02
412 426 2.091541 CCTAACCATTCAACCGCATGT 58.908 47.619 0.00 0.00 0.00 3.21
417 431 4.513442 TCATTCTCCTAACCATTCAACCG 58.487 43.478 0.00 0.00 0.00 4.44
422 436 6.881602 GGATACCATCATTCTCCTAACCATTC 59.118 42.308 0.00 0.00 0.00 2.67
434 448 2.613977 CGGGCAGAGGATACCATCATTC 60.614 54.545 0.00 0.00 37.17 2.67
435 449 1.349026 CGGGCAGAGGATACCATCATT 59.651 52.381 0.00 0.00 37.17 2.57
436 450 0.979665 CGGGCAGAGGATACCATCAT 59.020 55.000 0.00 0.00 37.17 2.45
437 451 0.398522 ACGGGCAGAGGATACCATCA 60.399 55.000 0.00 0.00 37.17 3.07
474 488 5.689514 CGAGCACCAATATTAAGTCTGAGAG 59.310 44.000 0.00 0.00 0.00 3.20
475 489 5.127194 ACGAGCACCAATATTAAGTCTGAGA 59.873 40.000 0.00 0.00 0.00 3.27
476 490 5.352284 ACGAGCACCAATATTAAGTCTGAG 58.648 41.667 0.00 0.00 0.00 3.35
477 491 5.339008 ACGAGCACCAATATTAAGTCTGA 57.661 39.130 0.00 0.00 0.00 3.27
478 492 7.715265 AATACGAGCACCAATATTAAGTCTG 57.285 36.000 0.00 0.00 0.00 3.51
479 493 8.732746 AAAATACGAGCACCAATATTAAGTCT 57.267 30.769 0.00 0.00 0.00 3.24
515 529 7.676736 TGTAGCGCACATCATCGAAAGATCT 62.677 44.000 11.47 0.00 39.86 2.75
516 530 5.549415 TGTAGCGCACATCATCGAAAGATC 61.549 45.833 11.47 0.00 39.86 2.75
517 531 3.737972 TGTAGCGCACATCATCGAAAGAT 60.738 43.478 11.47 0.00 41.65 2.40
518 532 2.416701 TGTAGCGCACATCATCGAAAGA 60.417 45.455 11.47 0.00 36.95 2.52
519 533 1.926510 TGTAGCGCACATCATCGAAAG 59.073 47.619 11.47 0.00 30.04 2.62
520 534 1.926510 CTGTAGCGCACATCATCGAAA 59.073 47.619 11.47 0.00 36.29 3.46
521 535 1.134175 TCTGTAGCGCACATCATCGAA 59.866 47.619 11.47 0.00 36.29 3.71
522 536 0.738389 TCTGTAGCGCACATCATCGA 59.262 50.000 11.47 2.69 36.29 3.59
523 537 1.126890 CTCTGTAGCGCACATCATCG 58.873 55.000 11.47 0.23 36.29 3.84
524 538 2.498807 TCTCTGTAGCGCACATCATC 57.501 50.000 11.47 0.00 36.29 2.92
525 539 2.482664 CCTTCTCTGTAGCGCACATCAT 60.483 50.000 11.47 0.00 36.29 2.45
535 549 2.353208 GCCACAGACACCTTCTCTGTAG 60.353 54.545 0.86 0.00 45.41 2.74
538 552 0.394192 TGCCACAGACACCTTCTCTG 59.606 55.000 0.00 0.00 40.97 3.35
539 553 1.131638 TTGCCACAGACACCTTCTCT 58.868 50.000 0.00 0.00 28.96 3.10
540 554 1.202698 AGTTGCCACAGACACCTTCTC 60.203 52.381 0.00 0.00 28.96 2.87
541 555 0.839946 AGTTGCCACAGACACCTTCT 59.160 50.000 0.00 0.00 33.33 2.85
542 556 1.680338 AAGTTGCCACAGACACCTTC 58.320 50.000 0.00 0.00 0.00 3.46
544 558 1.340991 ACAAAGTTGCCACAGACACCT 60.341 47.619 0.00 0.00 0.00 4.00
546 560 1.742831 TGACAAAGTTGCCACAGACAC 59.257 47.619 0.00 0.00 0.00 3.67
547 561 2.121291 TGACAAAGTTGCCACAGACA 57.879 45.000 0.00 0.00 0.00 3.41
549 563 3.554934 AGATTGACAAAGTTGCCACAGA 58.445 40.909 0.00 0.00 0.00 3.41
551 565 3.286353 TGAGATTGACAAAGTTGCCACA 58.714 40.909 0.00 0.00 0.00 4.17
552 566 3.988379 TGAGATTGACAAAGTTGCCAC 57.012 42.857 0.00 0.00 0.00 5.01
554 568 5.984926 TCATTTTGAGATTGACAAAGTTGCC 59.015 36.000 0.00 0.00 38.25 4.52
555 569 7.170320 ACATCATTTTGAGATTGACAAAGTTGC 59.830 33.333 0.00 0.00 38.25 4.17
556 570 8.484799 CACATCATTTTGAGATTGACAAAGTTG 58.515 33.333 0.00 0.00 38.25 3.16
557 571 8.199449 ACACATCATTTTGAGATTGACAAAGTT 58.801 29.630 0.00 0.00 38.25 2.66
574 588 3.118482 AGAGATTGAGCCGACACATCATT 60.118 43.478 0.00 0.00 0.00 2.57
584 598 0.457851 ACCTTCGAGAGATTGAGCCG 59.542 55.000 0.00 0.00 41.60 5.52
589 603 1.135257 ACGAGCACCTTCGAGAGATTG 60.135 52.381 2.12 0.00 43.03 2.67
598 612 2.614983 CTCTACTCCTACGAGCACCTTC 59.385 54.545 0.00 0.00 40.03 3.46
599 613 2.026075 ACTCTACTCCTACGAGCACCTT 60.026 50.000 0.00 0.00 40.03 3.50
600 614 1.560611 ACTCTACTCCTACGAGCACCT 59.439 52.381 0.00 0.00 40.03 4.00
608 622 2.796383 CGCATGCACACTCTACTCCTAC 60.796 54.545 19.57 0.00 0.00 3.18
611 625 0.108615 ACGCATGCACACTCTACTCC 60.109 55.000 19.57 0.00 0.00 3.85
613 627 0.108615 GGACGCATGCACACTCTACT 60.109 55.000 19.57 0.00 0.00 2.57
619 633 1.911293 ATGAACGGACGCATGCACAC 61.911 55.000 19.57 7.83 0.00 3.82
623 637 0.855349 CTCTATGAACGGACGCATGC 59.145 55.000 7.91 7.91 0.00 4.06
624 638 2.492019 TCTCTATGAACGGACGCATG 57.508 50.000 0.00 0.00 0.00 4.06
628 642 3.972950 ACTCATCTCTATGAACGGACG 57.027 47.619 0.00 0.00 41.57 4.79
631 645 7.476667 GGACATATACTCATCTCTATGAACGG 58.523 42.308 0.00 0.00 41.57 4.44
633 647 8.046294 ACGGACATATACTCATCTCTATGAAC 57.954 38.462 0.00 0.00 41.57 3.18
641 655 8.628280 CATGATCATACGGACATATACTCATCT 58.372 37.037 8.15 0.00 0.00 2.90
674 714 4.262894 CCTTTCACTACTTGCCCTGAGTTA 60.263 45.833 0.00 0.00 0.00 2.24
677 717 2.303022 TCCTTTCACTACTTGCCCTGAG 59.697 50.000 0.00 0.00 0.00 3.35
697 737 2.268298 AGACATACAAATGGACGCGTC 58.732 47.619 30.67 30.67 37.43 5.19
698 738 2.380084 AGACATACAAATGGACGCGT 57.620 45.000 13.85 13.85 37.43 6.01
699 739 2.670905 TCAAGACATACAAATGGACGCG 59.329 45.455 3.53 3.53 37.43 6.01
700 740 4.591202 CATCAAGACATACAAATGGACGC 58.409 43.478 0.00 0.00 37.43 5.19
701 741 4.591202 GCATCAAGACATACAAATGGACG 58.409 43.478 0.00 0.00 37.43 4.79
707 752 4.438608 GGATTGCGCATCAAGACATACAAA 60.439 41.667 12.75 0.00 38.22 2.83
713 758 1.089112 CTGGATTGCGCATCAAGACA 58.911 50.000 12.75 4.21 35.03 3.41
767 812 1.228184 GATAGACGAGCTCCGGGGA 60.228 63.158 4.80 0.00 43.93 4.81
867 917 4.980805 TTCCCGTGCACGTGAGCC 62.981 66.667 34.81 1.56 37.74 4.70
1740 1811 3.387947 GGGCTCTCCGACCCGAAA 61.388 66.667 0.00 0.00 36.07 3.46
2079 6886 1.546961 AGTACAGTCTCCGACCCTTG 58.453 55.000 0.00 0.00 32.18 3.61
2099 6907 7.862274 TCCAGACACAGAATATCCAATATCT 57.138 36.000 0.00 0.00 0.00 1.98
2100 6908 8.908786 TTTCCAGACACAGAATATCCAATATC 57.091 34.615 0.00 0.00 0.00 1.63
2141 6949 9.005777 CATCCAACCAGAAATGAAAATCAAAAT 57.994 29.630 0.00 0.00 0.00 1.82
2169 6977 3.706600 TCCCAACCATTGTACACCTAC 57.293 47.619 0.00 0.00 0.00 3.18
2230 7038 1.880027 GGTGGCTCCTTTGTGTGTTAG 59.120 52.381 0.00 0.00 0.00 2.34
2238 7046 1.856265 GACGCTTGGTGGCTCCTTTG 61.856 60.000 7.19 0.00 37.07 2.77
2260 7068 7.369607 ACATCGTCTATGAGATGAATGAGAAG 58.630 38.462 11.74 0.00 42.89 2.85
2270 7078 7.013750 AGACATGTTGTACATCGTCTATGAGAT 59.986 37.037 16.23 0.00 41.06 2.75
2276 7084 7.148355 TGTAAGACATGTTGTACATCGTCTA 57.852 36.000 15.05 7.00 41.51 2.59
2281 7089 6.797033 GTGCTTTGTAAGACATGTTGTACATC 59.203 38.462 18.10 12.77 36.53 3.06
2292 7100 1.837538 GCGCGGTGCTTTGTAAGACA 61.838 55.000 8.83 0.00 41.73 3.41
2305 7113 1.098712 TTTCAACTTCCAAGCGCGGT 61.099 50.000 4.23 4.23 0.00 5.68
2306 7114 0.385974 CTTTCAACTTCCAAGCGCGG 60.386 55.000 8.83 0.00 0.00 6.46
2307 7115 0.586319 TCTTTCAACTTCCAAGCGCG 59.414 50.000 0.00 0.00 0.00 6.86
2318 7126 4.746611 CCCTTTTGTGCAATCTCTTTCAAC 59.253 41.667 0.00 0.00 0.00 3.18
2365 7174 6.396829 AGAAACTTTCAGAATTTCCCACAG 57.603 37.500 4.34 0.00 33.64 3.66
2369 7178 4.220821 GGGGAGAAACTTTCAGAATTTCCC 59.779 45.833 12.78 12.78 40.79 3.97
2379 7188 3.403968 GTCAGAGTGGGGAGAAACTTTC 58.596 50.000 0.00 0.00 0.00 2.62
2413 7222 1.839894 CTATGGTTCCTCCCCTGCC 59.160 63.158 0.00 0.00 34.77 4.85
2453 7265 1.627864 GGCAAGGTTTAAGGAGGCAA 58.372 50.000 0.00 0.00 0.00 4.52
2455 7267 0.608308 ACGGCAAGGTTTAAGGAGGC 60.608 55.000 0.00 0.00 0.00 4.70
2462 7274 0.387622 CTCGACGACGGCAAGGTTTA 60.388 55.000 7.55 0.00 40.21 2.01
2463 7275 1.663702 CTCGACGACGGCAAGGTTT 60.664 57.895 7.55 0.00 40.21 3.27
2464 7276 2.049433 CTCGACGACGGCAAGGTT 60.049 61.111 7.55 0.00 40.21 3.50
2465 7277 4.052229 CCTCGACGACGGCAAGGT 62.052 66.667 0.00 0.00 40.21 3.50
2484 7296 3.426568 GGCTTCACTCGCTGGCAC 61.427 66.667 0.00 0.00 0.00 5.01
2485 7297 4.704833 GGGCTTCACTCGCTGGCA 62.705 66.667 0.00 0.00 0.00 4.92
2522 7334 1.764454 GAGAGGGAGAAGGAGCCCC 60.764 68.421 0.00 0.00 45.89 5.80
2542 7354 1.648720 CACACCAAACTCAGCCACG 59.351 57.895 0.00 0.00 0.00 4.94
2552 7364 0.251297 CCAGATCAGCCCACACCAAA 60.251 55.000 0.00 0.00 0.00 3.28
2605 7417 2.110213 GTCACCACCAAGGCGTCA 59.890 61.111 0.00 0.00 43.14 4.35
2609 7421 2.985847 GCCAGTCACCACCAAGGC 60.986 66.667 0.00 0.00 43.14 4.35
2622 7434 3.717294 ACTTAGCACCCCCGCCAG 61.717 66.667 0.00 0.00 0.00 4.85
2629 7441 2.813908 CGCGACCACTTAGCACCC 60.814 66.667 0.00 0.00 0.00 4.61
2636 7448 3.836176 GACACCGTCGCGACCACTT 62.836 63.158 31.84 15.17 0.00 3.16
2665 7477 4.722855 GCACCATTGCCACCGTGC 62.723 66.667 0.00 0.00 43.66 5.34
2676 7488 1.450848 CATCTCCAGCACGCACCAT 60.451 57.895 0.00 0.00 0.00 3.55
2696 7508 0.730265 GTGCCGAAGACACACAAACA 59.270 50.000 0.00 0.00 37.96 2.83
2697 7509 0.315869 CGTGCCGAAGACACACAAAC 60.316 55.000 0.00 0.00 37.93 2.93
2701 7513 2.661866 AGCGTGCCGAAGACACAC 60.662 61.111 0.00 0.00 37.93 3.82
2704 7516 3.881952 ATGCAGCGTGCCGAAGACA 62.882 57.895 7.38 0.00 44.23 3.41
2705 7517 3.121030 ATGCAGCGTGCCGAAGAC 61.121 61.111 7.38 0.00 44.23 3.01
2716 7528 0.534427 TGCCAGATCTAGCATGCAGC 60.534 55.000 21.98 1.34 46.19 5.25
2717 7529 1.514003 CTGCCAGATCTAGCATGCAG 58.486 55.000 21.98 14.96 38.56 4.41
2718 7530 0.835276 ACTGCCAGATCTAGCATGCA 59.165 50.000 21.98 9.11 38.56 3.96
2719 7531 1.227639 CACTGCCAGATCTAGCATGC 58.772 55.000 16.37 10.51 38.56 4.06
2720 7532 1.227639 GCACTGCCAGATCTAGCATG 58.772 55.000 16.37 15.97 38.56 4.06
2721 7533 0.249784 CGCACTGCCAGATCTAGCAT 60.250 55.000 16.37 4.50 38.56 3.79
2724 7536 1.068753 CCCGCACTGCCAGATCTAG 59.931 63.158 0.00 0.00 0.00 2.43
2726 7538 3.790437 CCCCGCACTGCCAGATCT 61.790 66.667 0.00 0.00 0.00 2.75
2740 7552 4.097361 GAGACGCCTCCAACCCCC 62.097 72.222 0.00 0.00 33.30 5.40
2754 7566 3.760035 GCTCGAACCAGCGGGAGA 61.760 66.667 10.86 5.14 38.05 3.71
2792 7604 2.740826 CCACCACAACCGTAGCCG 60.741 66.667 0.00 0.00 0.00 5.52
2818 7630 0.827507 GCATGTGACCACCAAACCCT 60.828 55.000 0.00 0.00 0.00 4.34
2828 7640 2.432456 TCAGCGACGCATGTGACC 60.432 61.111 23.70 3.36 0.00 4.02
2829 7641 1.678269 GAGTCAGCGACGCATGTGAC 61.678 60.000 24.97 24.97 39.74 3.67
2834 7646 2.669808 GATCGGAGTCAGCGACGCAT 62.670 60.000 23.70 3.41 37.67 4.73
2840 7652 0.524392 GTGTCTGATCGGAGTCAGCG 60.524 60.000 3.91 0.00 44.15 5.18
2844 7656 2.354510 CTGAGAGTGTCTGATCGGAGTC 59.645 54.545 3.91 2.53 0.00 3.36
2851 7663 2.101783 CCAGAGCTGAGAGTGTCTGAT 58.898 52.381 0.00 0.00 39.04 2.90
2866 7678 1.153939 CGACGACCAGAAGCCAGAG 60.154 63.158 0.00 0.00 0.00 3.35
2951 7763 3.995506 ATGTAGCCACCAAGCCGCC 62.996 63.158 0.00 0.00 0.00 6.13
2952 7764 2.438434 ATGTAGCCACCAAGCCGC 60.438 61.111 0.00 0.00 0.00 6.53
2953 7765 2.114670 CCATGTAGCCACCAAGCCG 61.115 63.158 0.00 0.00 0.00 5.52
2954 7766 1.754234 CCCATGTAGCCACCAAGCC 60.754 63.158 0.00 0.00 0.00 4.35
2955 7767 0.611896 AACCCATGTAGCCACCAAGC 60.612 55.000 0.00 0.00 0.00 4.01
2956 7768 1.176527 CAACCCATGTAGCCACCAAG 58.823 55.000 0.00 0.00 0.00 3.61
2957 7769 0.480690 ACAACCCATGTAGCCACCAA 59.519 50.000 0.00 0.00 41.63 3.67
2958 7770 0.251121 CACAACCCATGTAGCCACCA 60.251 55.000 0.00 0.00 41.46 4.17
2959 7771 0.251165 ACACAACCCATGTAGCCACC 60.251 55.000 0.00 0.00 41.46 4.61
2960 7772 1.165270 GACACAACCCATGTAGCCAC 58.835 55.000 0.00 0.00 41.46 5.01
2961 7773 0.321210 CGACACAACCCATGTAGCCA 60.321 55.000 0.00 0.00 41.46 4.75
2962 7774 1.024579 CCGACACAACCCATGTAGCC 61.025 60.000 0.00 0.00 41.46 3.93
2963 7775 1.024579 CCCGACACAACCCATGTAGC 61.025 60.000 0.00 0.00 41.46 3.58
2964 7776 1.024579 GCCCGACACAACCCATGTAG 61.025 60.000 0.00 0.00 41.46 2.74
2965 7777 1.003112 GCCCGACACAACCCATGTA 60.003 57.895 0.00 0.00 41.46 2.29
2966 7778 2.282180 GCCCGACACAACCCATGT 60.282 61.111 0.00 0.00 45.34 3.21
2967 7779 3.430862 CGCCCGACACAACCCATG 61.431 66.667 0.00 0.00 0.00 3.66
2971 7783 4.101790 CATGCGCCCGACACAACC 62.102 66.667 4.18 0.00 0.00 3.77
2972 7784 4.101790 CCATGCGCCCGACACAAC 62.102 66.667 4.18 0.00 0.00 3.32
2973 7785 3.241515 TACCATGCGCCCGACACAA 62.242 57.895 4.18 0.00 0.00 3.33
2974 7786 3.657448 CTACCATGCGCCCGACACA 62.657 63.158 4.18 0.00 0.00 3.72
2975 7787 2.890474 CTACCATGCGCCCGACAC 60.890 66.667 4.18 0.00 0.00 3.67
2976 7788 4.830765 GCTACCATGCGCCCGACA 62.831 66.667 4.18 0.00 0.00 4.35
2984 7796 2.817834 TTCACGCCGCTACCATGC 60.818 61.111 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.