Multiple sequence alignment - TraesCS3D01G131700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G131700 chr3D 100.000 2861 0 0 1 2861 91677587 91680447 0.000000e+00 5284.0
1 TraesCS3D01G131700 chr3D 76.386 415 64 15 2303 2689 597465977 597466385 2.910000e-45 193.0
2 TraesCS3D01G131700 chr3D 85.938 64 9 0 1562 1625 45686268 45686205 5.110000e-08 69.4
3 TraesCS3D01G131700 chr3A 91.328 1280 90 7 245 1516 107743306 107744572 0.000000e+00 1729.0
4 TraesCS3D01G131700 chr3A 87.665 835 59 21 1514 2306 107754866 107755698 0.000000e+00 931.0
5 TraesCS3D01G131700 chr3A 94.686 207 9 1 1 205 107743097 107743303 1.280000e-83 320.0
6 TraesCS3D01G131700 chr3A 74.910 279 36 11 2584 2830 550549872 550550148 2.350000e-16 97.1
7 TraesCS3D01G131700 chr3A 86.885 61 8 0 1562 1622 57244164 57244104 5.110000e-08 69.4
8 TraesCS3D01G131700 chr3B 92.609 663 46 1 1 663 141131457 141132116 0.000000e+00 950.0
9 TraesCS3D01G131700 chr3B 92.214 655 42 4 662 1313 141132215 141132863 0.000000e+00 918.0
10 TraesCS3D01G131700 chr3B 87.765 613 56 10 1474 2080 141132961 141133560 0.000000e+00 699.0
11 TraesCS3D01G131700 chr3B 89.524 105 11 0 2301 2405 467905201 467905097 1.790000e-27 134.0
12 TraesCS3D01G131700 chr3B 87.379 103 13 0 2303 2405 55006787 55006685 5.010000e-23 119.0
13 TraesCS3D01G131700 chr3B 87.719 57 7 0 1566 1622 71350659 71350603 1.840000e-07 67.6
14 TraesCS3D01G131700 chr1D 79.783 460 54 16 2437 2861 314327376 314326921 5.990000e-77 298.0
15 TraesCS3D01G131700 chr6B 74.798 619 89 24 2305 2861 44996280 44996893 1.730000e-52 217.0
16 TraesCS3D01G131700 chr6B 72.698 619 100 32 2303 2861 696454611 696454002 2.970000e-30 143.0
17 TraesCS3D01G131700 chr2B 75.771 454 60 16 2429 2840 2409492 2409937 1.750000e-42 183.0
18 TraesCS3D01G131700 chr2B 78.049 287 43 7 2419 2687 723035188 723034904 2.280000e-36 163.0
19 TraesCS3D01G131700 chr2B 85.714 91 9 4 2746 2833 396415175 396415264 3.040000e-15 93.5
20 TraesCS3D01G131700 chr2B 97.143 35 0 1 2479 2513 597889617 597889650 1.110000e-04 58.4
21 TraesCS3D01G131700 chr2A 75.831 331 47 18 2562 2860 421603766 421603437 1.380000e-28 137.0
22 TraesCS3D01G131700 chr2A 77.660 188 24 10 2554 2724 440945153 440945339 6.520000e-17 99.0
23 TraesCS3D01G131700 chr2A 74.902 255 38 13 2587 2823 480651315 480651561 3.040000e-15 93.5
24 TraesCS3D01G131700 chr6A 87.611 113 14 0 2303 2415 591389918 591389806 6.430000e-27 132.0
25 TraesCS3D01G131700 chr7B 74.185 399 64 24 2479 2861 628478510 628478885 2.310000e-26 130.0
26 TraesCS3D01G131700 chr7B 86.667 105 14 0 2301 2405 635315232 635315128 1.800000e-22 117.0
27 TraesCS3D01G131700 chr4B 86.916 107 14 0 2299 2405 428834978 428835084 1.390000e-23 121.0
28 TraesCS3D01G131700 chr4B 87.342 79 9 1 2755 2833 112338735 112338658 3.930000e-14 89.8
29 TraesCS3D01G131700 chr1A 86.916 107 14 0 2303 2409 571781750 571781644 1.390000e-23 121.0
30 TraesCS3D01G131700 chr6D 86.792 106 14 0 2300 2405 144603253 144603358 5.010000e-23 119.0
31 TraesCS3D01G131700 chr6D 87.379 103 13 0 2303 2405 448351879 448351981 5.010000e-23 119.0
32 TraesCS3D01G131700 chr6D 75.385 260 39 14 2505 2744 291907386 291907640 5.040000e-18 102.0
33 TraesCS3D01G131700 chr4D 86.667 105 14 0 2301 2405 69135229 69135333 1.800000e-22 117.0
34 TraesCS3D01G131700 chr4A 73.727 373 59 17 2498 2833 505822680 505823050 3.010000e-20 110.0
35 TraesCS3D01G131700 chrUn 76.271 236 37 12 2507 2725 327875216 327875449 1.080000e-19 108.0
36 TraesCS3D01G131700 chr7A 89.535 86 8 1 2745 2830 432430776 432430692 1.080000e-19 108.0
37 TraesCS3D01G131700 chr5A 74.598 311 45 13 2555 2833 587907858 587908166 3.900000e-19 106.0
38 TraesCS3D01G131700 chr1B 74.906 267 39 14 2594 2833 530056869 530056604 2.350000e-16 97.1
39 TraesCS3D01G131700 chr5D 86.047 86 12 0 2757 2842 327212765 327212680 3.040000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G131700 chr3D 91677587 91680447 2860 False 5284.000000 5284 100.000000 1 2861 1 chr3D.!!$F1 2860
1 TraesCS3D01G131700 chr3A 107743097 107744572 1475 False 1024.500000 1729 93.007000 1 1516 2 chr3A.!!$F3 1515
2 TraesCS3D01G131700 chr3A 107754866 107755698 832 False 931.000000 931 87.665000 1514 2306 1 chr3A.!!$F1 792
3 TraesCS3D01G131700 chr3B 141131457 141133560 2103 False 855.666667 950 90.862667 1 2080 3 chr3B.!!$F1 2079
4 TraesCS3D01G131700 chr6B 44996280 44996893 613 False 217.000000 217 74.798000 2305 2861 1 chr6B.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 636 0.251916 TTACAATCTCCGCCCCAGTG 59.748 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 2445 0.033504 CTAACACACCACCGAGCTGT 59.966 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.554960 AGCCAAAGGAAGTAAGTAGTCC 57.445 45.455 0.00 0.00 0.00 3.85
134 137 3.311871 CACCTAGTTGATGATGCAAGAGC 59.688 47.826 0.00 0.00 42.57 4.09
135 138 2.877168 CCTAGTTGATGATGCAAGAGCC 59.123 50.000 0.00 0.00 41.13 4.70
156 159 8.444783 AGAGCCGATAGATATATAGTGAAGGAT 58.555 37.037 0.00 0.00 39.76 3.24
207 210 2.982130 GATGTGGTCGGTGAGCCT 59.018 61.111 0.00 0.00 0.00 4.58
243 246 3.637229 ACTGACATGAATAGGGAGTACCG 59.363 47.826 0.00 0.00 46.96 4.02
250 253 6.439375 ACATGAATAGGGAGTACCGCATATTA 59.561 38.462 0.00 0.00 46.96 0.98
272 275 3.560636 AGTTGGATTAATGGAGGTCGG 57.439 47.619 0.00 0.00 0.00 4.79
276 279 1.985895 GGATTAATGGAGGTCGGGGAT 59.014 52.381 0.00 0.00 0.00 3.85
367 370 1.224965 GAAGGAGATGGAAGATGCGC 58.775 55.000 0.00 0.00 0.00 6.09
381 384 0.464373 ATGCGCTGTCCATGGTAAGG 60.464 55.000 12.58 6.18 0.00 2.69
522 525 3.325359 ACCTAGCTAGGAACGGGTTAT 57.675 47.619 40.40 16.38 46.63 1.89
533 536 6.546428 AGGAACGGGTTATATCATATGGAG 57.454 41.667 2.13 0.00 0.00 3.86
569 572 6.430925 ACACAATCATGCACTAACAACACTAT 59.569 34.615 0.00 0.00 0.00 2.12
570 573 6.963242 CACAATCATGCACTAACAACACTATC 59.037 38.462 0.00 0.00 0.00 2.08
571 574 6.654582 ACAATCATGCACTAACAACACTATCA 59.345 34.615 0.00 0.00 0.00 2.15
572 575 7.337689 ACAATCATGCACTAACAACACTATCAT 59.662 33.333 0.00 0.00 0.00 2.45
580 583 7.923344 GCACTAACAACACTATCATCAGTATCT 59.077 37.037 0.00 0.00 0.00 1.98
602 605 6.883744 TCTAACATGTATCCATACAAGCACA 58.116 36.000 0.00 0.00 45.40 4.57
608 611 6.682423 TGTATCCATACAAGCACATTGAAG 57.318 37.500 0.00 0.00 41.83 3.02
609 612 6.179756 TGTATCCATACAAGCACATTGAAGT 58.820 36.000 0.00 0.00 41.83 3.01
633 636 0.251916 TTACAATCTCCGCCCCAGTG 59.748 55.000 0.00 0.00 0.00 3.66
768 872 6.477253 TGTTTATCTAGTGGTATTGGTTGCA 58.523 36.000 0.00 0.00 0.00 4.08
848 952 2.370281 TCACACGGAGATCTCTTTGC 57.630 50.000 21.81 4.74 0.00 3.68
898 1002 6.679884 GCTCCATCTGCTTTAATTCTTGGAAG 60.680 42.308 0.00 0.00 32.02 3.46
948 1054 8.659925 AATGCATGTTTTCTTGTCAATTAACA 57.340 26.923 0.00 8.72 0.00 2.41
974 1080 5.166398 GCTCATTCAGAAGGTTTGAATTGG 58.834 41.667 0.00 0.00 41.91 3.16
992 1098 6.939730 TGAATTGGACTACAACAGAATAGCAA 59.060 34.615 0.00 0.00 42.94 3.91
1086 1197 1.965219 CGACGTCCTGGAGTTCCTT 59.035 57.895 10.58 0.00 36.82 3.36
1100 1211 3.399181 CCTTGCCGGCCTCCTGTA 61.399 66.667 26.77 0.00 0.00 2.74
1149 1260 2.436109 ACCAAGGAGCGCATGGTT 59.564 55.556 17.85 0.55 44.92 3.67
1190 1301 1.520342 GCAGCGTGGAGAAGCTAGG 60.520 63.158 0.00 0.00 42.52 3.02
1193 1304 0.900647 AGCGTGGAGAAGCTAGGTGT 60.901 55.000 0.00 0.00 42.60 4.16
1272 1383 2.752358 CTCCAGCAGCTGTTGGGA 59.248 61.111 39.13 28.23 45.15 4.37
1274 1385 0.323178 CTCCAGCAGCTGTTGGGAAT 60.323 55.000 39.13 6.87 45.15 3.01
1292 1403 4.939439 GGGAATACAACTCAACAACGGTAT 59.061 41.667 0.00 0.00 0.00 2.73
1323 1434 1.519408 ACACATGTGAAGGCCGTAAC 58.481 50.000 31.94 0.00 0.00 2.50
1336 1447 1.214589 CGTAACACTGGCGCCTACT 59.785 57.895 29.70 10.07 0.00 2.57
1376 1487 5.450688 GCTGTGGATATCTATCGGTGATACC 60.451 48.000 2.05 0.00 33.52 2.73
1384 1495 9.175312 GATATCTATCGGTGATACCTAACAGAA 57.825 37.037 0.00 0.00 35.66 3.02
1385 1496 6.879276 TCTATCGGTGATACCTAACAGAAG 57.121 41.667 0.00 0.00 35.66 2.85
1394 1505 1.555533 ACCTAACAGAAGCTGCCCTAC 59.444 52.381 0.00 0.00 34.37 3.18
1395 1506 1.834263 CCTAACAGAAGCTGCCCTACT 59.166 52.381 0.00 0.00 34.37 2.57
1399 1510 1.028868 CAGAAGCTGCCCTACTTGCC 61.029 60.000 0.00 0.00 0.00 4.52
1400 1511 2.045926 AAGCTGCCCTACTTGCCG 60.046 61.111 0.00 0.00 0.00 5.69
1411 1522 4.562757 GCCCTACTTGCCGATGTTATATGA 60.563 45.833 0.00 0.00 0.00 2.15
1412 1523 4.929808 CCCTACTTGCCGATGTTATATGAC 59.070 45.833 0.00 0.00 0.00 3.06
1413 1524 4.621460 CCTACTTGCCGATGTTATATGACG 59.379 45.833 0.00 0.00 0.00 4.35
1415 1526 4.689071 ACTTGCCGATGTTATATGACGAA 58.311 39.130 0.00 0.00 0.00 3.85
1434 1545 4.933064 GCTATGACGCTCGCCGCT 62.933 66.667 0.00 0.00 41.76 5.52
1444 1555 2.966309 CTCGCCGCTGAAACCAACC 61.966 63.158 0.00 0.00 0.00 3.77
1450 1561 1.228154 GCTGAAACCAACCGGACCT 60.228 57.895 9.46 0.00 35.59 3.85
1512 1623 0.108329 CCATGTACACTGTCGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
1530 1641 2.223735 GGACGACTTGACAGTGACTTCA 60.224 50.000 0.00 0.00 31.22 3.02
1584 1695 0.902984 TCAAGGACCTCAGCGCCTTA 60.903 55.000 2.29 0.00 39.91 2.69
1587 1698 1.192146 AGGACCTCAGCGCCTTACAA 61.192 55.000 2.29 0.00 0.00 2.41
1633 1744 3.560896 GGAAGAGGTACGTAGTGCTCTAG 59.439 52.174 0.00 0.00 45.73 2.43
1641 1752 5.572126 GGTACGTAGTGCTCTAGTTTCTTTG 59.428 44.000 0.00 0.00 45.73 2.77
1642 1753 5.449107 ACGTAGTGCTCTAGTTTCTTTGA 57.551 39.130 0.00 0.00 42.51 2.69
1696 1808 3.535561 AGTTGATCGGCTGGTGATTTAG 58.464 45.455 0.00 0.00 0.00 1.85
1722 1834 6.512177 TTTGTTTTGTGTGTGTTTGTGTAC 57.488 33.333 0.00 0.00 0.00 2.90
1723 1835 5.440234 TGTTTTGTGTGTGTTTGTGTACT 57.560 34.783 0.00 0.00 0.00 2.73
1801 1914 2.080286 CGTCCTGTCGGATGTCTTTT 57.920 50.000 0.00 0.00 42.43 2.27
1842 1955 2.093235 CCTCAAGAGGGAACATCCTGAC 60.093 54.545 8.28 0.00 44.87 3.51
1845 1958 0.252284 AGAGGGAACATCCTGACGGT 60.252 55.000 0.00 0.00 37.25 4.83
1887 2000 5.967674 CGGTGCTTGCTATTTTAGAATTCTG 59.032 40.000 18.47 0.98 0.00 3.02
1888 2001 6.268566 GGTGCTTGCTATTTTAGAATTCTGG 58.731 40.000 18.47 2.80 0.00 3.86
2012 2137 8.303876 TCAAATTTTACTCCTTAAGTGCCAATC 58.696 33.333 0.97 0.00 39.11 2.67
2020 2146 4.137543 CCTTAAGTGCCAATCTGGGTATC 58.862 47.826 0.97 0.00 38.19 2.24
2061 2187 9.682465 AGGAGTATAAAAATTGTCCTAGTTTCC 57.318 33.333 0.00 0.00 32.48 3.13
2074 2200 6.958192 TGTCCTAGTTTCCTCCATAGTTAAGT 59.042 38.462 0.00 0.00 0.00 2.24
2116 2268 2.187100 AGTGGGGCCCATTGTTAATTG 58.813 47.619 31.48 0.00 35.28 2.32
2119 2271 1.484653 GGGGCCCATTGTTAATTGGAC 59.515 52.381 26.86 0.00 30.89 4.02
2149 2301 1.153086 AATCAGCCCTCACATCGGC 60.153 57.895 0.00 0.00 46.09 5.54
2153 2305 2.203070 GCCCTCACATCGGCGAAT 60.203 61.111 15.93 1.55 34.94 3.34
2154 2306 2.537560 GCCCTCACATCGGCGAATG 61.538 63.158 15.93 15.97 34.94 2.67
2222 2374 0.250295 CGAACCATGTCACCACACCT 60.250 55.000 0.00 0.00 34.48 4.00
2225 2377 0.397941 ACCATGTCACCACACCTGAG 59.602 55.000 0.00 0.00 34.48 3.35
2226 2378 0.957395 CCATGTCACCACACCTGAGC 60.957 60.000 0.00 0.00 34.48 4.26
2227 2379 0.957395 CATGTCACCACACCTGAGCC 60.957 60.000 0.00 0.00 34.48 4.70
2228 2380 1.418097 ATGTCACCACACCTGAGCCA 61.418 55.000 0.00 0.00 34.48 4.75
2229 2381 1.302033 GTCACCACACCTGAGCCAG 60.302 63.158 0.00 0.00 0.00 4.85
2247 2399 2.780693 CCAGTCCCCTCTCCCTCA 59.219 66.667 0.00 0.00 0.00 3.86
2264 2425 0.899720 TCAACGCGAGGTAGGGATTT 59.100 50.000 15.93 0.00 0.00 2.17
2270 2431 1.954927 CGAGGTAGGGATTTGGAAGC 58.045 55.000 0.00 0.00 0.00 3.86
2272 2433 1.485066 GAGGTAGGGATTTGGAAGCGA 59.515 52.381 0.00 0.00 0.00 4.93
2273 2434 1.209747 AGGTAGGGATTTGGAAGCGAC 59.790 52.381 0.00 0.00 0.00 5.19
2284 2445 1.593209 GAAGCGACGGTGGTGACAA 60.593 57.895 0.00 0.00 46.06 3.18
2306 2467 1.014564 GCTCGGTGGTGTGTTAGAGC 61.015 60.000 0.00 0.00 43.11 4.09
2307 2468 0.317160 CTCGGTGGTGTGTTAGAGCA 59.683 55.000 0.00 0.00 0.00 4.26
2308 2469 0.753867 TCGGTGGTGTGTTAGAGCAA 59.246 50.000 0.00 0.00 0.00 3.91
2309 2470 0.865769 CGGTGGTGTGTTAGAGCAAC 59.134 55.000 0.00 0.00 37.67 4.17
2310 2471 1.540363 CGGTGGTGTGTTAGAGCAACT 60.540 52.381 0.00 0.00 38.05 3.16
2311 2472 2.288579 CGGTGGTGTGTTAGAGCAACTA 60.289 50.000 0.00 0.00 38.05 2.24
2312 2473 3.064931 GGTGGTGTGTTAGAGCAACTAC 58.935 50.000 0.00 0.00 38.05 2.73
2313 2474 3.493699 GGTGGTGTGTTAGAGCAACTACA 60.494 47.826 0.00 0.00 38.05 2.74
2314 2475 4.124238 GTGGTGTGTTAGAGCAACTACAA 58.876 43.478 0.00 0.00 38.05 2.41
2315 2476 4.025145 GTGGTGTGTTAGAGCAACTACAAC 60.025 45.833 0.00 0.00 36.86 3.32
2316 2477 3.497262 GGTGTGTTAGAGCAACTACAACC 59.503 47.826 0.00 0.00 38.05 3.77
2317 2478 4.124238 GTGTGTTAGAGCAACTACAACCA 58.876 43.478 0.00 0.00 38.05 3.67
2318 2479 4.211374 GTGTGTTAGAGCAACTACAACCAG 59.789 45.833 0.00 0.00 38.05 4.00
2319 2480 3.746492 GTGTTAGAGCAACTACAACCAGG 59.254 47.826 0.00 0.00 38.05 4.45
2324 2485 1.165270 GCAACTACAACCAGGCGATT 58.835 50.000 0.00 0.00 0.00 3.34
2331 2492 0.109781 CAACCAGGCGATTCAAACGG 60.110 55.000 0.00 0.00 0.00 4.44
2337 2498 2.275812 CGATTCAAACGGACGCGC 60.276 61.111 5.73 0.00 0.00 6.86
2339 2500 4.439472 ATTCAAACGGACGCGCGC 62.439 61.111 32.58 23.91 0.00 6.86
2343 2504 4.659874 AAACGGACGCGCGCTTTG 62.660 61.111 32.58 19.69 0.00 2.77
2356 2517 0.316689 CGCTTTGTCCGCTTTTCGTT 60.317 50.000 0.00 0.00 36.19 3.85
2358 2519 1.658968 CTTTGTCCGCTTTTCGTTCG 58.341 50.000 0.00 0.00 36.19 3.95
2360 2521 0.578211 TTGTCCGCTTTTCGTTCGTC 59.422 50.000 0.00 0.00 36.19 4.20
2362 2523 0.161024 GTCCGCTTTTCGTTCGTCTG 59.839 55.000 0.00 0.00 36.19 3.51
2364 2525 0.942410 CCGCTTTTCGTTCGTCTGGA 60.942 55.000 0.00 0.00 36.19 3.86
2366 2527 1.059264 CGCTTTTCGTTCGTCTGGATC 59.941 52.381 0.00 0.00 0.00 3.36
2375 2536 2.105128 GTCTGGATCGGTGAGGCG 59.895 66.667 0.00 0.00 0.00 5.52
2376 2537 3.147595 TCTGGATCGGTGAGGCGG 61.148 66.667 0.00 0.00 0.00 6.13
2379 2540 4.570663 GGATCGGTGAGGCGGACG 62.571 72.222 0.00 0.00 0.00 4.79
2406 2567 4.796369 CGTCCGCTTTTTAAAATGGGTTA 58.204 39.130 21.60 11.80 0.00 2.85
2411 2572 5.465935 CGCTTTTTAAAATGGGTTAGCAGA 58.534 37.500 17.62 0.00 0.00 4.26
2415 2576 5.991933 TTTAAAATGGGTTAGCAGATGCA 57.008 34.783 7.68 0.00 45.16 3.96
2416 2577 6.543430 TTTAAAATGGGTTAGCAGATGCAT 57.457 33.333 0.00 0.00 45.16 3.96
2417 2578 4.395959 AAAATGGGTTAGCAGATGCATG 57.604 40.909 2.46 0.00 45.16 4.06
2435 2610 0.896479 TGCCTATATCAGCCCGCGTA 60.896 55.000 4.92 0.00 0.00 4.42
2515 2706 6.399639 AAACATAAATGACCGGTCAAAGTT 57.600 33.333 39.04 31.04 43.58 2.66
2522 2713 4.139859 TGACCGGTCAAAGTTCACTTAA 57.860 40.909 34.60 6.57 36.53 1.85
2527 2718 5.358725 ACCGGTCAAAGTTCACTTAAACATT 59.641 36.000 0.00 0.00 34.61 2.71
2586 2777 2.510918 GCGTCCGCCTTACCCTTC 60.511 66.667 0.00 0.00 34.56 3.46
2596 2788 0.037734 CTTACCCTTCCCTTGCCGTT 59.962 55.000 0.00 0.00 0.00 4.44
2606 2798 3.855209 CTTGCCGTTGTTGTCGCCG 62.855 63.158 0.00 0.00 0.00 6.46
2609 2801 2.962786 CCGTTGTTGTCGCCGTCA 60.963 61.111 0.00 0.00 0.00 4.35
2611 2803 2.935955 GTTGTTGTCGCCGTCAGG 59.064 61.111 0.00 0.00 41.62 3.86
2618 2810 4.671590 TCGCCGTCAGGGAGGTCA 62.672 66.667 0.00 0.00 38.47 4.02
2623 2815 0.613260 CCGTCAGGGAGGTCAATGAA 59.387 55.000 0.00 0.00 38.47 2.57
2624 2816 1.003118 CCGTCAGGGAGGTCAATGAAA 59.997 52.381 0.00 0.00 38.47 2.69
2633 2825 1.423921 AGGTCAATGAAAACGGGAGGT 59.576 47.619 0.00 0.00 0.00 3.85
2634 2826 1.539827 GGTCAATGAAAACGGGAGGTG 59.460 52.381 0.00 0.00 0.00 4.00
2651 2843 1.918293 TGGACCAGCCCACTCGAAT 60.918 57.895 0.00 0.00 34.97 3.34
2655 2847 2.125552 CAGCCCACTCGAATGCGA 60.126 61.111 0.00 0.00 45.71 5.10
2661 2853 1.645034 CCACTCGAATGCGACTTGAT 58.355 50.000 0.00 0.00 42.51 2.57
2666 2858 1.409064 TCGAATGCGACTTGATAGGCT 59.591 47.619 0.00 0.00 42.51 4.58
2671 2863 0.744414 GCGACTTGATAGGCTGCCAA 60.744 55.000 22.65 5.16 0.00 4.52
2683 2875 3.991725 CTGCCAAGGCTGCCTCCTC 62.992 68.421 23.61 13.71 42.51 3.71
2695 2899 2.825836 CTCCTCCGGTGGCATTGC 60.826 66.667 18.03 0.00 0.00 3.56
2725 2935 2.185608 GCGCTCCTCCTCCTCAAC 59.814 66.667 0.00 0.00 0.00 3.18
2727 2937 2.896443 GCTCCTCCTCCTCAACGG 59.104 66.667 0.00 0.00 0.00 4.44
2732 2942 2.203788 TCCTCCTCAACGGGCAGT 60.204 61.111 0.00 0.00 0.00 4.40
2734 2944 2.743718 CTCCTCAACGGGCAGTGT 59.256 61.111 0.00 0.00 0.00 3.55
2740 2950 1.071471 CAACGGGCAGTGTCTCCTT 59.929 57.895 0.00 0.00 0.00 3.36
2752 2974 1.158466 TCTCCTTGTCCTGCTCCCA 59.842 57.895 0.00 0.00 0.00 4.37
2754 2976 0.322008 CTCCTTGTCCTGCTCCCAAC 60.322 60.000 0.00 0.00 0.00 3.77
2763 2985 3.512516 GCTCCCAACGCATCTGCC 61.513 66.667 0.00 0.00 37.91 4.85
2769 2991 2.124983 AACGCATCTGCCGCTCAT 60.125 55.556 0.00 0.00 37.91 2.90
2772 2994 4.010414 GCATCTGCCGCTCATCGC 62.010 66.667 0.00 0.00 36.73 4.58
2774 2996 4.957684 ATCTGCCGCTCATCGCCG 62.958 66.667 0.00 0.00 36.73 6.46
2805 3027 2.998279 GCAAGCCAATGCGCCTTCT 61.998 57.895 4.18 0.00 44.33 2.85
2807 3029 0.379669 CAAGCCAATGCGCCTTCTAG 59.620 55.000 4.18 0.00 44.33 2.43
2825 3047 4.785453 CGCTCAAGGTGGGCCTCC 62.785 72.222 16.96 16.96 41.93 4.30
2838 3060 0.397816 GGCCTCCTCCTTCTCTAGCA 60.398 60.000 0.00 0.00 0.00 3.49
2842 3064 1.269448 CTCCTCCTTCTCTAGCATCGC 59.731 57.143 0.00 0.00 0.00 4.58
2843 3065 1.035923 CCTCCTTCTCTAGCATCGCA 58.964 55.000 0.00 0.00 0.00 5.10
2846 3068 0.938637 CCTTCTCTAGCATCGCAGCG 60.939 60.000 9.06 9.06 40.15 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.717280 CCTGATGGGACTACTTACTTCCTT 59.283 45.833 0.00 0.00 37.23 3.36
64 65 3.487372 ACATCATCATGAAGCCTGATGG 58.513 45.455 28.14 16.82 46.46 3.51
134 137 7.574030 CGCCATCCTTCACTATATATCTATCGG 60.574 44.444 0.00 0.00 0.00 4.18
135 138 7.173390 TCGCCATCCTTCACTATATATCTATCG 59.827 40.741 0.00 0.00 0.00 2.92
179 182 1.766143 GACCACATCGAATGCTCCGC 61.766 60.000 0.00 0.00 0.00 5.54
192 195 0.902984 ATACAGGCTCACCGACCACA 60.903 55.000 0.00 0.00 42.76 4.17
207 210 4.021192 TCATGTCAGTCTTCTGCACATACA 60.021 41.667 0.00 0.00 38.76 2.29
243 246 9.686683 ACCTCCATTAATCCAACTATAATATGC 57.313 33.333 0.00 0.00 0.00 3.14
250 253 4.041691 CCCGACCTCCATTAATCCAACTAT 59.958 45.833 0.00 0.00 0.00 2.12
271 274 2.094675 CAACATGTTCCTGTCATCCCC 58.905 52.381 8.48 0.00 0.00 4.81
272 275 1.474077 GCAACATGTTCCTGTCATCCC 59.526 52.381 8.48 0.00 0.00 3.85
276 279 1.142667 TCCAGCAACATGTTCCTGTCA 59.857 47.619 24.42 10.73 0.00 3.58
381 384 1.464997 GTTTCCTCGCTTCCACATGTC 59.535 52.381 0.00 0.00 0.00 3.06
384 387 0.320374 TCGTTTCCTCGCTTCCACAT 59.680 50.000 0.00 0.00 0.00 3.21
522 525 7.125053 TGTGTTGTTGTCCTACTCCATATGATA 59.875 37.037 3.65 0.00 0.00 2.15
533 536 4.023279 TGCATGATTGTGTTGTTGTCCTAC 60.023 41.667 0.00 0.00 0.00 3.18
580 583 7.772757 TCAATGTGCTTGTATGGATACATGTTA 59.227 33.333 2.30 0.00 45.18 2.41
602 605 6.043411 GCGGAGATTGTAAGAGTACTTCAAT 58.957 40.000 0.00 6.55 37.00 2.57
608 611 2.223994 GGGGCGGAGATTGTAAGAGTAC 60.224 54.545 0.00 0.00 0.00 2.73
609 612 2.037144 GGGGCGGAGATTGTAAGAGTA 58.963 52.381 0.00 0.00 0.00 2.59
768 872 4.016444 CCCACAAGCTATGTACAAACCAT 58.984 43.478 0.00 0.00 41.46 3.55
848 952 7.903431 GCAATACCATCTTTCTAAACTGTAACG 59.097 37.037 0.00 0.00 0.00 3.18
898 1002 7.582435 TCTGTATCATCGAAAAGAAGTTGAC 57.418 36.000 0.00 0.00 0.00 3.18
948 1054 6.600882 ATTCAAACCTTCTGAATGAGCAAT 57.399 33.333 0.00 0.00 41.02 3.56
974 1080 4.508662 AGGCTTGCTATTCTGTTGTAGTC 58.491 43.478 0.00 0.00 0.00 2.59
992 1098 5.571285 TCATCGATAACTCCATAGTAGGCT 58.429 41.667 0.00 0.00 33.75 4.58
1075 1186 2.747855 GCCGGCAAGGAACTCCAG 60.748 66.667 24.80 0.00 45.00 3.86
1086 1197 4.715130 AGGTACAGGAGGCCGGCA 62.715 66.667 30.85 1.46 0.00 5.69
1124 1235 1.153549 CGCTCCTTGGTCAGTAGGC 60.154 63.158 0.00 0.00 0.00 3.93
1190 1301 3.728845 TCCTTGCTCTTGTAGTTCACAC 58.271 45.455 0.00 0.00 36.69 3.82
1193 1304 2.610479 CGCTCCTTGCTCTTGTAGTTCA 60.610 50.000 0.00 0.00 40.11 3.18
1257 1368 1.098050 GTATTCCCAACAGCTGCTGG 58.902 55.000 31.00 26.35 35.51 4.85
1272 1383 6.483974 TGTCAATACCGTTGTTGAGTTGTATT 59.516 34.615 0.00 0.00 33.87 1.89
1274 1385 5.234757 GTGTCAATACCGTTGTTGAGTTGTA 59.765 40.000 0.00 0.00 33.87 2.41
1283 1394 3.764237 AGAAGGTGTCAATACCGTTGT 57.236 42.857 0.00 0.00 45.56 3.32
1292 1403 4.681074 TCACATGTGTAGAAGGTGTCAA 57.319 40.909 24.63 0.00 0.00 3.18
1323 1434 2.185350 CCTGAGTAGGCGCCAGTG 59.815 66.667 31.54 11.81 37.25 3.66
1336 1447 1.379977 AGCTAGTGCCTACGCCTGA 60.380 57.895 0.00 0.00 40.80 3.86
1376 1487 3.265791 CAAGTAGGGCAGCTTCTGTTAG 58.734 50.000 0.00 0.00 33.43 2.34
1384 1495 2.370445 ATCGGCAAGTAGGGCAGCT 61.370 57.895 0.00 0.00 0.00 4.24
1385 1496 2.182842 CATCGGCAAGTAGGGCAGC 61.183 63.158 0.00 0.00 0.00 5.25
1394 1505 4.150627 CCTTCGTCATATAACATCGGCAAG 59.849 45.833 0.00 0.00 0.00 4.01
1395 1506 4.055360 CCTTCGTCATATAACATCGGCAA 58.945 43.478 0.00 0.00 0.00 4.52
1399 1510 6.251589 GTCATAGCCTTCGTCATATAACATCG 59.748 42.308 0.00 0.00 0.00 3.84
1400 1511 6.251589 CGTCATAGCCTTCGTCATATAACATC 59.748 42.308 0.00 0.00 0.00 3.06
1411 1522 1.064296 CGAGCGTCATAGCCTTCGT 59.936 57.895 0.00 0.00 38.01 3.85
1412 1523 2.296480 GCGAGCGTCATAGCCTTCG 61.296 63.158 0.00 0.00 37.70 3.79
1413 1524 1.951631 GGCGAGCGTCATAGCCTTC 60.952 63.158 0.00 0.00 45.67 3.46
1415 1526 4.271816 CGGCGAGCGTCATAGCCT 62.272 66.667 0.00 0.00 46.85 4.58
1434 1545 0.466555 CCAAGGTCCGGTTGGTTTCA 60.467 55.000 13.01 0.00 39.82 2.69
1440 1551 2.983592 GCCACCAAGGTCCGGTTG 60.984 66.667 0.00 0.00 40.61 3.77
1483 1594 1.555075 AGTGTACATGGCCACAGGTAG 59.445 52.381 8.16 0.00 43.64 3.18
1493 1604 0.108329 GTCCCCGACAGTGTACATGG 60.108 60.000 0.00 0.00 32.09 3.66
1512 1623 1.789464 GCTGAAGTCACTGTCAAGTCG 59.211 52.381 0.00 0.00 32.98 4.18
1516 1627 2.042464 AGAGGCTGAAGTCACTGTCAA 58.958 47.619 0.00 0.00 0.00 3.18
1519 1630 3.567478 AAAAGAGGCTGAAGTCACTGT 57.433 42.857 0.00 0.00 0.00 3.55
1584 1695 4.752101 CCGATCTTCACTGTCTTTTCTTGT 59.248 41.667 0.00 0.00 0.00 3.16
1587 1698 3.244215 TGCCGATCTTCACTGTCTTTTCT 60.244 43.478 0.00 0.00 0.00 2.52
1641 1752 6.095021 ACACCACCTAAAAGTTCAAAGACTTC 59.905 38.462 0.00 0.00 38.86 3.01
1642 1753 5.949952 ACACCACCTAAAAGTTCAAAGACTT 59.050 36.000 0.00 0.00 41.44 3.01
1696 1808 4.903016 CACAAACACACACAAAACAAAAGC 59.097 37.500 0.00 0.00 0.00 3.51
1801 1914 1.078709 CGAGCATTCTTCTTCGGCAA 58.921 50.000 0.00 0.00 0.00 4.52
1830 1943 0.320374 TGACACCGTCAGGATGTTCC 59.680 55.000 0.00 0.00 37.67 3.62
1913 2030 5.046529 CACTCAAATACATCTCCTTCCTCG 58.953 45.833 0.00 0.00 0.00 4.63
1984 2109 7.657336 TGGCACTTAAGGAGTAAAATTTGAAG 58.343 34.615 7.53 0.00 36.65 3.02
1986 2111 7.589958 TTGGCACTTAAGGAGTAAAATTTGA 57.410 32.000 7.53 0.00 36.65 2.69
2007 2132 3.390639 AGAGCAAGAGATACCCAGATTGG 59.609 47.826 0.00 0.00 37.25 3.16
2012 2137 6.166984 TCAAATAGAGCAAGAGATACCCAG 57.833 41.667 0.00 0.00 0.00 4.45
2020 2146 9.823647 TTTTATACTCCTCAAATAGAGCAAGAG 57.176 33.333 0.00 0.00 43.31 2.85
2061 2187 8.946085 TGATGCAAAACTTACTTAACTATGGAG 58.054 33.333 0.00 0.00 0.00 3.86
2074 2200 8.461222 CCACTTGATAGAATGATGCAAAACTTA 58.539 33.333 0.00 0.00 0.00 2.24
2092 2244 0.116940 AACAATGGGCCCCACTTGAT 59.883 50.000 26.86 17.03 35.80 2.57
2116 2268 5.424895 AGGGCTGATTCATCTATCTATGTCC 59.575 44.000 0.00 0.00 0.00 4.02
2119 2271 6.070938 TGTGAGGGCTGATTCATCTATCTATG 60.071 42.308 0.00 0.00 0.00 2.23
2132 2284 2.507944 GCCGATGTGAGGGCTGAT 59.492 61.111 0.00 0.00 45.93 2.90
2149 2301 3.541792 GCATTTTGCACGAATCATTCG 57.458 42.857 18.38 18.38 45.95 3.34
2153 2305 1.535028 AGACGCATTTTGCACGAATCA 59.465 42.857 0.24 0.00 45.36 2.57
2154 2306 2.169179 GAGACGCATTTTGCACGAATC 58.831 47.619 0.24 0.00 45.36 2.52
2174 2326 1.106944 GGGGCCCCATTTATCACGTG 61.107 60.000 37.61 9.94 35.81 4.49
2222 2374 4.664267 AGGGGACTGGCTGGCTCA 62.664 66.667 0.00 0.00 41.13 4.26
2225 2377 3.791586 GAGAGGGGACTGGCTGGC 61.792 72.222 0.00 0.00 44.43 4.85
2226 2378 3.086600 GGAGAGGGGACTGGCTGG 61.087 72.222 0.00 0.00 44.43 4.85
2227 2379 3.086600 GGGAGAGGGGACTGGCTG 61.087 72.222 0.00 0.00 44.43 4.85
2228 2380 3.288381 AGGGAGAGGGGACTGGCT 61.288 66.667 0.00 0.00 44.43 4.75
2229 2381 2.766229 GAGGGAGAGGGGACTGGC 60.766 72.222 0.00 0.00 44.43 4.85
2247 2399 0.107848 CCAAATCCCTACCTCGCGTT 60.108 55.000 5.77 0.00 0.00 4.84
2264 2425 3.228017 TCACCACCGTCGCTTCCA 61.228 61.111 0.00 0.00 0.00 3.53
2270 2431 2.594962 GCTGTTGTCACCACCGTCG 61.595 63.158 0.00 0.00 0.00 5.12
2272 2433 1.227556 GAGCTGTTGTCACCACCGT 60.228 57.895 0.00 0.00 0.00 4.83
2273 2434 2.310233 CGAGCTGTTGTCACCACCG 61.310 63.158 0.00 0.00 0.00 4.94
2284 2445 0.033504 CTAACACACCACCGAGCTGT 59.966 55.000 0.00 0.00 0.00 4.40
2289 2450 0.753867 TTGCTCTAACACACCACCGA 59.246 50.000 0.00 0.00 0.00 4.69
2290 2451 0.865769 GTTGCTCTAACACACCACCG 59.134 55.000 0.00 0.00 39.16 4.94
2306 2467 2.422597 TGAATCGCCTGGTTGTAGTTG 58.577 47.619 0.00 0.00 0.00 3.16
2307 2468 2.851263 TGAATCGCCTGGTTGTAGTT 57.149 45.000 0.00 0.00 0.00 2.24
2308 2469 2.812011 GTTTGAATCGCCTGGTTGTAGT 59.188 45.455 0.00 0.00 0.00 2.73
2309 2470 2.159707 CGTTTGAATCGCCTGGTTGTAG 60.160 50.000 0.00 0.00 0.00 2.74
2310 2471 1.801771 CGTTTGAATCGCCTGGTTGTA 59.198 47.619 0.00 0.00 0.00 2.41
2311 2472 0.591170 CGTTTGAATCGCCTGGTTGT 59.409 50.000 0.00 0.00 0.00 3.32
2312 2473 0.109781 CCGTTTGAATCGCCTGGTTG 60.110 55.000 0.00 0.00 0.00 3.77
2313 2474 0.250553 TCCGTTTGAATCGCCTGGTT 60.251 50.000 0.00 0.00 0.00 3.67
2314 2475 0.953960 GTCCGTTTGAATCGCCTGGT 60.954 55.000 0.00 0.00 0.00 4.00
2315 2476 1.794222 GTCCGTTTGAATCGCCTGG 59.206 57.895 0.00 0.00 0.00 4.45
2316 2477 1.419922 CGTCCGTTTGAATCGCCTG 59.580 57.895 0.00 0.00 0.00 4.85
2317 2478 2.388232 GCGTCCGTTTGAATCGCCT 61.388 57.895 0.00 0.00 40.83 5.52
2318 2479 2.097728 GCGTCCGTTTGAATCGCC 59.902 61.111 0.00 0.00 40.83 5.54
2319 2480 2.275812 CGCGTCCGTTTGAATCGC 60.276 61.111 0.00 0.00 42.78 4.58
2337 2498 0.316689 AACGAAAAGCGGACAAAGCG 60.317 50.000 0.00 0.00 46.49 4.68
2339 2500 1.004292 ACGAACGAAAAGCGGACAAAG 60.004 47.619 0.14 0.00 46.49 2.77
2343 2504 0.161024 CAGACGAACGAAAAGCGGAC 59.839 55.000 0.14 0.00 46.49 4.79
2347 2508 1.059264 CGATCCAGACGAACGAAAAGC 59.941 52.381 0.14 0.00 38.97 3.51
2356 2517 2.415608 GCCTCACCGATCCAGACGA 61.416 63.158 0.00 0.00 0.00 4.20
2358 2519 2.105128 CGCCTCACCGATCCAGAC 59.895 66.667 0.00 0.00 0.00 3.51
2360 2521 3.147595 TCCGCCTCACCGATCCAG 61.148 66.667 0.00 0.00 0.00 3.86
2362 2523 4.570663 CGTCCGCCTCACCGATCC 62.571 72.222 0.00 0.00 0.00 3.36
2392 2553 6.352016 TGCATCTGCTAACCCATTTTAAAA 57.648 33.333 2.51 2.51 42.66 1.52
2396 2557 3.431207 GCATGCATCTGCTAACCCATTTT 60.431 43.478 14.21 0.00 42.66 1.82
2398 2559 1.684983 GCATGCATCTGCTAACCCATT 59.315 47.619 14.21 0.00 42.66 3.16
2399 2560 1.325355 GCATGCATCTGCTAACCCAT 58.675 50.000 14.21 0.00 42.66 4.00
2406 2567 3.875125 CTGATATAGGCATGCATCTGCT 58.125 45.455 21.36 9.37 41.95 4.24
2419 2580 2.717580 TTGTACGCGGGCTGATATAG 57.282 50.000 12.47 0.00 0.00 1.31
2420 2581 2.624364 TCTTTGTACGCGGGCTGATATA 59.376 45.455 12.47 0.00 0.00 0.86
2425 2600 0.589223 TTTTCTTTGTACGCGGGCTG 59.411 50.000 12.47 0.00 0.00 4.85
2426 2601 1.310904 TTTTTCTTTGTACGCGGGCT 58.689 45.000 12.47 0.00 0.00 5.19
2454 2634 8.870160 TTATATGTTTATTTTCAGCCACATGC 57.130 30.769 0.00 0.00 41.71 4.06
2546 2737 2.203070 GCAGTGTATGGCCCGGAG 60.203 66.667 0.73 0.00 0.00 4.63
2574 2765 1.749258 GCAAGGGAAGGGTAAGGCG 60.749 63.158 0.00 0.00 0.00 5.52
2581 2772 1.530655 AACAACGGCAAGGGAAGGG 60.531 57.895 0.00 0.00 0.00 3.95
2586 2777 2.637025 CGACAACAACGGCAAGGG 59.363 61.111 0.00 0.00 0.00 3.95
2596 2788 3.220999 CTCCCTGACGGCGACAACA 62.221 63.158 16.62 7.27 0.00 3.33
2606 2798 2.484264 CGTTTTCATTGACCTCCCTGAC 59.516 50.000 0.00 0.00 0.00 3.51
2607 2799 2.552155 CCGTTTTCATTGACCTCCCTGA 60.552 50.000 0.00 0.00 0.00 3.86
2609 2801 1.271926 CCCGTTTTCATTGACCTCCCT 60.272 52.381 0.00 0.00 0.00 4.20
2611 2803 2.084546 CTCCCGTTTTCATTGACCTCC 58.915 52.381 0.00 0.00 0.00 4.30
2618 2810 1.546998 GGTCCACCTCCCGTTTTCATT 60.547 52.381 0.00 0.00 0.00 2.57
2623 2815 3.157680 CTGGTCCACCTCCCGTTT 58.842 61.111 0.00 0.00 36.82 3.60
2624 2816 3.637273 GCTGGTCCACCTCCCGTT 61.637 66.667 0.00 0.00 36.82 4.44
2633 2825 1.918293 ATTCGAGTGGGCTGGTCCA 60.918 57.895 0.00 0.00 36.21 4.02
2634 2826 1.450312 CATTCGAGTGGGCTGGTCC 60.450 63.158 0.00 0.00 0.00 4.46
2646 2838 1.409064 AGCCTATCAAGTCGCATTCGA 59.591 47.619 0.00 0.00 43.28 3.71
2651 2843 1.153369 GGCAGCCTATCAAGTCGCA 60.153 57.895 3.29 0.00 0.00 5.10
2655 2847 0.394899 GCCTTGGCAGCCTATCAAGT 60.395 55.000 14.15 0.00 36.94 3.16
2707 2911 3.452786 TTGAGGAGGAGGAGCGCG 61.453 66.667 0.00 0.00 0.00 6.86
2725 2935 1.374758 GACAAGGAGACACTGCCCG 60.375 63.158 0.00 0.00 0.00 6.13
2727 2937 0.321122 CAGGACAAGGAGACACTGCC 60.321 60.000 0.00 0.00 0.00 4.85
2732 2942 1.194781 GGGAGCAGGACAAGGAGACA 61.195 60.000 0.00 0.00 0.00 3.41
2734 2944 0.473694 TTGGGAGCAGGACAAGGAGA 60.474 55.000 0.00 0.00 0.00 3.71
2740 2950 3.555324 TGCGTTGGGAGCAGGACA 61.555 61.111 0.00 0.00 40.01 4.02
2752 2974 2.124983 ATGAGCGGCAGATGCGTT 60.125 55.556 1.45 0.00 43.26 4.84
2754 2976 3.699484 CGATGAGCGGCAGATGCG 61.699 66.667 1.45 0.00 43.26 4.73
2800 3022 0.460987 CCACCTTGAGCGCTAGAAGG 60.461 60.000 32.09 32.09 41.85 3.46
2805 3027 4.096003 GGCCCACCTTGAGCGCTA 62.096 66.667 11.50 0.00 0.00 4.26
2823 3045 1.323412 GCGATGCTAGAGAAGGAGGA 58.677 55.000 0.00 0.00 0.00 3.71
2825 3047 1.602668 GCTGCGATGCTAGAGAAGGAG 60.603 57.143 0.00 0.00 0.00 3.69
2829 3051 1.002359 CTACGCTGCGATGCTAGAGAA 60.002 52.381 30.47 0.00 0.00 2.87
2830 3052 0.588737 CTACGCTGCGATGCTAGAGA 59.411 55.000 30.47 1.14 0.00 3.10
2838 3060 2.102357 CGTCCACTACGCTGCGAT 59.898 61.111 30.47 15.20 46.10 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.