Multiple sequence alignment - TraesCS3D01G131000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G131000 chr3D 100.000 4797 0 0 1 4797 91029262 91034058 0.000000e+00 8859.0
1 TraesCS3D01G131000 chr3D 91.362 602 34 15 4205 4797 303464959 303464367 0.000000e+00 808.0
2 TraesCS3D01G131000 chr3D 91.160 543 21 4 4275 4797 564806131 564805596 0.000000e+00 712.0
3 TraesCS3D01G131000 chr3D 95.455 220 10 0 3 222 91022781 91023000 7.640000e-93 351.0
4 TraesCS3D01G131000 chr3D 93.665 221 14 0 2 222 251330832 251330612 9.950000e-87 331.0
5 TraesCS3D01G131000 chr3D 92.241 232 17 1 1 231 522019538 522019307 1.290000e-85 327.0
6 TraesCS3D01G131000 chr3A 93.578 3239 136 22 662 3861 107316398 107319603 0.000000e+00 4763.0
7 TraesCS3D01G131000 chr3B 91.979 3017 147 44 964 3918 140686218 140689201 0.000000e+00 4143.0
8 TraesCS3D01G131000 chr3B 88.312 693 55 17 225 894 140685134 140685823 0.000000e+00 808.0
9 TraesCS3D01G131000 chr3B 91.525 295 19 5 4504 4797 20345137 20344848 7.480000e-108 401.0
10 TraesCS3D01G131000 chr6D 93.035 761 36 4 4051 4797 433309317 433310074 0.000000e+00 1096.0
11 TraesCS3D01G131000 chr6D 90.840 786 32 7 4047 4797 418629100 418628320 0.000000e+00 1016.0
12 TraesCS3D01G131000 chr6D 90.183 764 47 16 4055 4795 450000889 450000131 0.000000e+00 970.0
13 TraesCS3D01G131000 chr6D 90.305 753 51 11 4057 4796 463712252 463711509 0.000000e+00 966.0
14 TraesCS3D01G131000 chr6D 83.838 99 10 4 3948 4042 303975228 303975132 6.610000e-14 89.8
15 TraesCS3D01G131000 chr5D 91.233 787 28 9 4049 4797 480811555 480810772 0.000000e+00 1033.0
16 TraesCS3D01G131000 chr5D 89.855 759 51 14 4057 4797 498306901 498307651 0.000000e+00 952.0
17 TraesCS3D01G131000 chr5D 89.481 770 51 18 4051 4797 306570307 306571069 0.000000e+00 946.0
18 TraesCS3D01G131000 chr5D 87.452 789 46 17 4057 4796 535498641 535497857 0.000000e+00 859.0
19 TraesCS3D01G131000 chr5D 92.457 464 27 7 4338 4797 549588346 549587887 0.000000e+00 656.0
20 TraesCS3D01G131000 chr5D 95.045 222 11 0 1 222 475144545 475144766 2.750000e-92 350.0
21 TraesCS3D01G131000 chr1D 90.445 764 46 11 4057 4797 297388906 297388147 0.000000e+00 981.0
22 TraesCS3D01G131000 chr1D 78.226 124 18 6 3925 4041 139965031 139965152 2.400000e-08 71.3
23 TraesCS3D01G131000 chr7D 90.212 756 50 13 4057 4797 417354249 417354995 0.000000e+00 965.0
24 TraesCS3D01G131000 chr7D 93.333 225 15 0 1 225 324396473 324396249 2.770000e-87 333.0
25 TraesCS3D01G131000 chr7D 93.694 222 14 0 1 222 515268792 515269013 2.770000e-87 333.0
26 TraesCS3D01G131000 chr7D 92.544 228 17 0 2 229 130406320 130406093 1.290000e-85 327.0
27 TraesCS3D01G131000 chr4D 90.066 755 55 10 4057 4797 69259378 69258630 0.000000e+00 961.0
28 TraesCS3D01G131000 chr4D 93.333 225 15 0 1 225 473532690 473532466 2.770000e-87 333.0
29 TraesCS3D01G131000 chr4D 100.000 28 0 0 4016 4043 497415539 497415566 9.000000e-03 52.8
30 TraesCS3D01G131000 chr4D 100.000 28 0 0 4016 4043 497418959 497418986 9.000000e-03 52.8
31 TraesCS3D01G131000 chr4D 100.000 28 0 0 4016 4043 497422576 497422603 9.000000e-03 52.8
32 TraesCS3D01G131000 chr4D 100.000 28 0 0 4016 4043 497426062 497426089 9.000000e-03 52.8
33 TraesCS3D01G131000 chr4D 100.000 28 0 0 4016 4043 497442962 497442989 9.000000e-03 52.8
34 TraesCS3D01G131000 chr2D 89.804 765 48 19 4057 4797 6215476 6216234 0.000000e+00 953.0
35 TraesCS3D01G131000 chr2D 90.939 309 21 6 4491 4797 637671653 637671350 4.470000e-110 409.0
36 TraesCS3D01G131000 chr2D 94.248 226 13 0 1 226 564371395 564371170 3.550000e-91 346.0
37 TraesCS3D01G131000 chr4B 82.270 141 24 1 313 453 113539130 113539269 2.340000e-23 121.0
38 TraesCS3D01G131000 chr1A 81.379 145 26 1 301 445 144580782 144580925 3.030000e-22 117.0
39 TraesCS3D01G131000 chr5B 83.333 126 12 5 3925 4043 225521534 225521657 1.830000e-19 108.0
40 TraesCS3D01G131000 chr7A 84.314 102 15 1 355 456 543448233 543448333 1.100000e-16 99.0
41 TraesCS3D01G131000 chr2B 82.759 116 15 2 3932 4043 522202142 522202028 1.100000e-16 99.0
42 TraesCS3D01G131000 chr2B 97.222 36 1 0 477 512 164934844 164934879 1.440000e-05 62.1
43 TraesCS3D01G131000 chr6B 83.333 108 13 2 3940 4043 648090200 648090094 1.420000e-15 95.3
44 TraesCS3D01G131000 chr6B 85.915 71 9 1 3948 4018 469705501 469705432 1.850000e-09 75.0
45 TraesCS3D01G131000 chr7B 80.172 116 23 0 307 422 97925363 97925478 2.380000e-13 87.9
46 TraesCS3D01G131000 chr7B 84.848 66 4 4 3982 4042 697711609 697711673 1.440000e-05 62.1
47 TraesCS3D01G131000 chr5A 84.043 94 10 2 3962 4051 277718214 277718122 8.550000e-13 86.1
48 TraesCS3D01G131000 chr5A 80.342 117 18 2 3932 4043 567947422 567947306 3.080000e-12 84.2
49 TraesCS3D01G131000 chr5A 80.342 117 18 2 3932 4043 567954700 567954584 3.080000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G131000 chr3D 91029262 91034058 4796 False 8859.0 8859 100.0000 1 4797 1 chr3D.!!$F2 4796
1 TraesCS3D01G131000 chr3D 303464367 303464959 592 True 808.0 808 91.3620 4205 4797 1 chr3D.!!$R2 592
2 TraesCS3D01G131000 chr3D 564805596 564806131 535 True 712.0 712 91.1600 4275 4797 1 chr3D.!!$R4 522
3 TraesCS3D01G131000 chr3A 107316398 107319603 3205 False 4763.0 4763 93.5780 662 3861 1 chr3A.!!$F1 3199
4 TraesCS3D01G131000 chr3B 140685134 140689201 4067 False 2475.5 4143 90.1455 225 3918 2 chr3B.!!$F1 3693
5 TraesCS3D01G131000 chr6D 433309317 433310074 757 False 1096.0 1096 93.0350 4051 4797 1 chr6D.!!$F1 746
6 TraesCS3D01G131000 chr6D 418628320 418629100 780 True 1016.0 1016 90.8400 4047 4797 1 chr6D.!!$R2 750
7 TraesCS3D01G131000 chr6D 450000131 450000889 758 True 970.0 970 90.1830 4055 4795 1 chr6D.!!$R3 740
8 TraesCS3D01G131000 chr6D 463711509 463712252 743 True 966.0 966 90.3050 4057 4796 1 chr6D.!!$R4 739
9 TraesCS3D01G131000 chr5D 480810772 480811555 783 True 1033.0 1033 91.2330 4049 4797 1 chr5D.!!$R1 748
10 TraesCS3D01G131000 chr5D 498306901 498307651 750 False 952.0 952 89.8550 4057 4797 1 chr5D.!!$F3 740
11 TraesCS3D01G131000 chr5D 306570307 306571069 762 False 946.0 946 89.4810 4051 4797 1 chr5D.!!$F1 746
12 TraesCS3D01G131000 chr5D 535497857 535498641 784 True 859.0 859 87.4520 4057 4796 1 chr5D.!!$R2 739
13 TraesCS3D01G131000 chr1D 297388147 297388906 759 True 981.0 981 90.4450 4057 4797 1 chr1D.!!$R1 740
14 TraesCS3D01G131000 chr7D 417354249 417354995 746 False 965.0 965 90.2120 4057 4797 1 chr7D.!!$F1 740
15 TraesCS3D01G131000 chr4D 69258630 69259378 748 True 961.0 961 90.0660 4057 4797 1 chr4D.!!$R1 740
16 TraesCS3D01G131000 chr2D 6215476 6216234 758 False 953.0 953 89.8040 4057 4797 1 chr2D.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.031721 GGTGAAGATAGGCCGTACGG 59.968 60.0 30.06 30.06 38.57 4.02 F
391 394 0.100682 TTCCACTAGACGCTCATCGC 59.899 55.0 0.00 0.00 43.23 4.58 F
504 507 0.318784 CCTAACCATCCGAGCTACGC 60.319 60.0 0.00 0.00 41.07 4.42 F
1726 2108 0.392461 GCAGTCATAACCTGGGCGAA 60.392 55.0 0.00 0.00 0.00 4.70 F
2185 2589 0.985549 GTGTGCGAGCTAGAGTTTCG 59.014 55.0 0.00 0.00 37.40 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1961 0.698886 TAGGATTCTGGGCATGGGCT 60.699 55.0 0.00 0.00 40.87 5.19 R
1760 2142 0.812811 CGCCTGCTGAGCACATATGT 60.813 55.0 1.40 1.41 33.79 2.29 R
1762 2144 0.812811 CACGCCTGCTGAGCACATAT 60.813 55.0 1.40 0.00 33.79 1.78 R
2759 3167 0.878416 GCAGTACAATCCAAACCGCA 59.122 50.0 0.00 0.00 0.00 5.69 R
4053 4473 0.997196 GGCAGTTATCGACGTCCAAC 59.003 55.0 10.58 11.56 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.758737 CCTCGCGAGGTACCCCTT 60.759 66.667 40.77 0.00 42.86 3.95
20 21 2.494918 CTCGCGAGGTACCCCTTG 59.505 66.667 28.40 0.00 42.86 3.61
24 25 3.400188 CGAGGTACCCCTTGCCTT 58.600 61.111 8.74 0.00 41.22 4.35
25 26 1.078426 CGAGGTACCCCTTGCCTTG 60.078 63.158 8.74 0.00 41.22 3.61
26 27 1.550130 CGAGGTACCCCTTGCCTTGA 61.550 60.000 8.74 0.00 42.92 3.02
27 28 0.919710 GAGGTACCCCTTGCCTTGAT 59.080 55.000 8.74 0.00 41.22 2.57
28 29 0.919710 AGGTACCCCTTGCCTTGATC 59.080 55.000 8.74 0.00 36.84 2.92
29 30 0.919710 GGTACCCCTTGCCTTGATCT 59.080 55.000 0.00 0.00 0.00 2.75
30 31 1.134068 GGTACCCCTTGCCTTGATCTC 60.134 57.143 0.00 0.00 0.00 2.75
31 32 1.840635 GTACCCCTTGCCTTGATCTCT 59.159 52.381 0.00 0.00 0.00 3.10
32 33 0.915364 ACCCCTTGCCTTGATCTCTC 59.085 55.000 0.00 0.00 0.00 3.20
33 34 0.182299 CCCCTTGCCTTGATCTCTCC 59.818 60.000 0.00 0.00 0.00 3.71
34 35 0.179062 CCCTTGCCTTGATCTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
35 36 0.813210 CCTTGCCTTGATCTCTCCGC 60.813 60.000 0.00 0.00 0.00 5.54
36 37 0.177604 CTTGCCTTGATCTCTCCGCT 59.822 55.000 0.00 0.00 0.00 5.52
37 38 0.176680 TTGCCTTGATCTCTCCGCTC 59.823 55.000 0.00 0.00 0.00 5.03
38 39 1.068921 GCCTTGATCTCTCCGCTCC 59.931 63.158 0.00 0.00 0.00 4.70
39 40 1.398958 GCCTTGATCTCTCCGCTCCT 61.399 60.000 0.00 0.00 0.00 3.69
40 41 0.673437 CCTTGATCTCTCCGCTCCTC 59.327 60.000 0.00 0.00 0.00 3.71
41 42 0.310543 CTTGATCTCTCCGCTCCTCG 59.689 60.000 0.00 0.00 38.08 4.63
42 43 1.729470 TTGATCTCTCCGCTCCTCGC 61.729 60.000 0.00 0.00 36.73 5.03
43 44 2.124109 ATCTCTCCGCTCCTCGCA 60.124 61.111 0.00 0.00 39.08 5.10
44 45 1.729470 GATCTCTCCGCTCCTCGCAA 61.729 60.000 0.00 0.00 39.08 4.85
45 46 1.733402 ATCTCTCCGCTCCTCGCAAG 61.733 60.000 0.00 0.00 39.08 4.01
46 47 4.135153 TCTCCGCTCCTCGCAAGC 62.135 66.667 0.00 0.00 39.08 4.01
52 53 4.093291 CTCCTCGCAAGCCAGCCT 62.093 66.667 0.00 0.00 37.18 4.58
53 54 4.399395 TCCTCGCAAGCCAGCCTG 62.399 66.667 0.00 0.00 37.18 4.85
55 56 4.711949 CTCGCAAGCCAGCCTGGT 62.712 66.667 13.35 0.00 40.46 4.00
58 59 3.060615 GCAAGCCAGCCTGGTGAG 61.061 66.667 13.35 3.39 40.46 3.51
59 60 2.360852 CAAGCCAGCCTGGTGAGG 60.361 66.667 13.35 0.00 40.46 3.86
82 83 2.651361 CGTGAGGAGGTCTTGCGT 59.349 61.111 0.00 0.00 0.00 5.24
83 84 1.444553 CGTGAGGAGGTCTTGCGTC 60.445 63.158 0.00 0.00 0.00 5.19
84 85 1.444553 GTGAGGAGGTCTTGCGTCG 60.445 63.158 0.00 0.00 33.10 5.12
85 86 1.901948 TGAGGAGGTCTTGCGTCGT 60.902 57.895 0.00 0.00 33.10 4.34
86 87 1.153997 GAGGAGGTCTTGCGTCGTC 60.154 63.158 0.00 0.00 38.90 4.20
87 88 2.126031 GGAGGTCTTGCGTCGTCC 60.126 66.667 0.00 0.00 33.10 4.79
88 89 2.504244 GAGGTCTTGCGTCGTCCG 60.504 66.667 0.00 0.00 40.40 4.79
89 90 3.264866 GAGGTCTTGCGTCGTCCGT 62.265 63.158 0.00 0.00 39.32 4.69
90 91 2.804090 GGTCTTGCGTCGTCCGTC 60.804 66.667 0.00 0.00 39.32 4.79
91 92 2.804090 GTCTTGCGTCGTCCGTCC 60.804 66.667 0.00 0.00 39.32 4.79
92 93 4.047059 TCTTGCGTCGTCCGTCCC 62.047 66.667 0.00 0.00 39.32 4.46
109 110 2.747855 CGCAAGGCTTGACCCCTC 60.748 66.667 30.45 10.56 40.58 4.30
110 111 2.747855 GCAAGGCTTGACCCCTCG 60.748 66.667 30.45 1.77 40.58 4.63
111 112 2.747855 CAAGGCTTGACCCCTCGC 60.748 66.667 22.64 0.00 40.58 5.03
112 113 4.394712 AAGGCTTGACCCCTCGCG 62.395 66.667 0.00 0.00 40.58 5.87
114 115 4.821589 GGCTTGACCCCTCGCGAG 62.822 72.222 29.06 29.06 0.00 5.03
123 124 2.492090 CCTCGCGAGGGTCTTGAG 59.508 66.667 41.47 17.83 44.87 3.02
124 125 2.344203 CCTCGCGAGGGTCTTGAGT 61.344 63.158 41.47 0.00 44.87 3.41
125 126 1.153939 CTCGCGAGGGTCTTGAGTG 60.154 63.158 28.40 0.00 0.00 3.51
126 127 1.867919 CTCGCGAGGGTCTTGAGTGT 61.868 60.000 28.40 0.00 0.00 3.55
127 128 1.006102 CGCGAGGGTCTTGAGTGTT 60.006 57.895 0.00 0.00 0.00 3.32
128 129 0.600255 CGCGAGGGTCTTGAGTGTTT 60.600 55.000 0.00 0.00 0.00 2.83
129 130 0.868406 GCGAGGGTCTTGAGTGTTTG 59.132 55.000 0.00 0.00 0.00 2.93
130 131 1.810412 GCGAGGGTCTTGAGTGTTTGT 60.810 52.381 0.00 0.00 0.00 2.83
131 132 2.561569 CGAGGGTCTTGAGTGTTTGTT 58.438 47.619 0.00 0.00 0.00 2.83
132 133 2.287915 CGAGGGTCTTGAGTGTTTGTTG 59.712 50.000 0.00 0.00 0.00 3.33
133 134 2.618709 GAGGGTCTTGAGTGTTTGTTGG 59.381 50.000 0.00 0.00 0.00 3.77
134 135 2.025321 AGGGTCTTGAGTGTTTGTTGGT 60.025 45.455 0.00 0.00 0.00 3.67
135 136 2.099098 GGGTCTTGAGTGTTTGTTGGTG 59.901 50.000 0.00 0.00 0.00 4.17
136 137 3.013921 GGTCTTGAGTGTTTGTTGGTGA 58.986 45.455 0.00 0.00 0.00 4.02
137 138 3.442273 GGTCTTGAGTGTTTGTTGGTGAA 59.558 43.478 0.00 0.00 0.00 3.18
138 139 4.438744 GGTCTTGAGTGTTTGTTGGTGAAG 60.439 45.833 0.00 0.00 0.00 3.02
139 140 4.394920 GTCTTGAGTGTTTGTTGGTGAAGA 59.605 41.667 0.00 0.00 0.00 2.87
140 141 5.066505 GTCTTGAGTGTTTGTTGGTGAAGAT 59.933 40.000 0.00 0.00 0.00 2.40
141 142 6.260050 GTCTTGAGTGTTTGTTGGTGAAGATA 59.740 38.462 0.00 0.00 0.00 1.98
142 143 6.483307 TCTTGAGTGTTTGTTGGTGAAGATAG 59.517 38.462 0.00 0.00 0.00 2.08
143 144 5.063204 TGAGTGTTTGTTGGTGAAGATAGG 58.937 41.667 0.00 0.00 0.00 2.57
144 145 3.821033 AGTGTTTGTTGGTGAAGATAGGC 59.179 43.478 0.00 0.00 0.00 3.93
145 146 3.057526 GTGTTTGTTGGTGAAGATAGGCC 60.058 47.826 0.00 0.00 0.00 5.19
146 147 2.107950 TTGTTGGTGAAGATAGGCCG 57.892 50.000 0.00 0.00 0.00 6.13
147 148 0.981183 TGTTGGTGAAGATAGGCCGT 59.019 50.000 0.00 0.00 0.00 5.68
148 149 2.181125 TGTTGGTGAAGATAGGCCGTA 58.819 47.619 0.00 0.00 0.00 4.02
149 150 2.093869 TGTTGGTGAAGATAGGCCGTAC 60.094 50.000 0.00 0.00 0.00 3.67
150 151 0.742505 TGGTGAAGATAGGCCGTACG 59.257 55.000 8.69 8.69 0.00 3.67
151 152 0.031721 GGTGAAGATAGGCCGTACGG 59.968 60.000 30.06 30.06 38.57 4.02
152 153 0.031721 GTGAAGATAGGCCGTACGGG 59.968 60.000 33.98 16.91 39.58 5.28
195 196 4.711949 CCGCAGGCAGGCAAGTCT 62.712 66.667 0.00 0.00 46.14 3.24
196 197 3.429141 CGCAGGCAGGCAAGTCTG 61.429 66.667 7.14 7.14 43.93 3.51
197 198 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
198 199 2.360852 CAGGCAGGCAAGTCTGGG 60.361 66.667 3.62 0.00 37.58 4.45
199 200 3.655211 AGGCAGGCAAGTCTGGGG 61.655 66.667 3.62 0.00 35.43 4.96
200 201 3.650950 GGCAGGCAAGTCTGGGGA 61.651 66.667 3.62 0.00 35.43 4.81
201 202 2.360475 GCAGGCAAGTCTGGGGAC 60.360 66.667 3.62 0.00 42.41 4.46
215 216 2.931649 GGACCCCCGTTCCCAGAA 60.932 66.667 0.00 0.00 0.00 3.02
216 217 2.350134 GACCCCCGTTCCCAGAAC 59.650 66.667 0.00 0.00 0.00 3.01
217 218 3.600898 GACCCCCGTTCCCAGAACG 62.601 68.421 19.99 19.99 42.74 3.95
221 222 4.367023 CCGTTCCCAGAACGCCGA 62.367 66.667 21.18 0.00 41.85 5.54
222 223 2.125673 CGTTCCCAGAACGCCGAT 60.126 61.111 15.91 0.00 36.82 4.18
223 224 1.140161 CGTTCCCAGAACGCCGATA 59.860 57.895 15.91 0.00 36.82 2.92
235 236 1.719709 GCCGATAGCCGTGAAAACC 59.280 57.895 0.00 0.00 36.31 3.27
252 253 1.604604 ACCGGTGTCAAGAAACCATG 58.395 50.000 6.12 2.87 36.14 3.66
261 262 5.238432 GTGTCAAGAAACCATGTGTGATACA 59.762 40.000 0.00 0.00 44.87 2.29
283 284 6.068670 ACATTGGTCTAGCCTTTTGTAAAGT 58.931 36.000 5.06 0.00 38.35 2.66
284 285 6.549736 ACATTGGTCTAGCCTTTTGTAAAGTT 59.450 34.615 5.06 0.00 38.35 2.66
285 286 7.722285 ACATTGGTCTAGCCTTTTGTAAAGTTA 59.278 33.333 5.06 0.00 38.35 2.24
321 324 4.393062 AGACTTAGCCGACACATCATTTTG 59.607 41.667 0.00 0.00 0.00 2.44
327 330 5.185454 AGCCGACACATCATTTTGAGATTA 58.815 37.500 0.00 0.00 0.00 1.75
362 365 3.551890 CAGACGTTTTCATAGTCGATGGG 59.448 47.826 0.00 0.00 39.65 4.00
365 368 4.766375 ACGTTTTCATAGTCGATGGGAAT 58.234 39.130 0.00 0.00 36.08 3.01
366 369 4.570772 ACGTTTTCATAGTCGATGGGAATG 59.429 41.667 0.00 0.00 36.08 2.67
370 373 4.855715 TCATAGTCGATGGGAATGTCTC 57.144 45.455 0.00 0.00 36.08 3.36
379 382 3.199442 TGGGAATGTCTCCTTCCACTA 57.801 47.619 4.62 0.00 44.68 2.74
380 383 3.107601 TGGGAATGTCTCCTTCCACTAG 58.892 50.000 4.62 0.00 44.68 2.57
391 394 0.100682 TTCCACTAGACGCTCATCGC 59.899 55.000 0.00 0.00 43.23 4.58
393 396 0.945099 CCACTAGACGCTCATCGCTA 59.055 55.000 0.00 0.00 43.23 4.26
398 401 0.665835 AGACGCTCATCGCTAGAAGG 59.334 55.000 0.00 0.00 43.23 3.46
399 402 0.937231 GACGCTCATCGCTAGAAGGC 60.937 60.000 0.00 0.00 43.23 4.35
411 414 7.387948 TCATCGCTAGAAGGCCTAAAATAAATC 59.612 37.037 5.16 0.00 0.00 2.17
415 418 6.207614 GCTAGAAGGCCTAAAATAAATCCAGG 59.792 42.308 5.16 0.00 0.00 4.45
422 425 6.483307 GGCCTAAAATAAATCCAGGAAAATGC 59.517 38.462 0.00 0.00 0.00 3.56
426 429 4.918810 ATAAATCCAGGAAAATGCGACC 57.081 40.909 0.00 0.00 0.00 4.79
428 431 2.442236 ATCCAGGAAAATGCGACCAT 57.558 45.000 0.00 0.00 0.00 3.55
429 432 3.576078 ATCCAGGAAAATGCGACCATA 57.424 42.857 0.00 0.00 0.00 2.74
430 433 3.358111 TCCAGGAAAATGCGACCATAA 57.642 42.857 0.00 0.00 0.00 1.90
441 444 2.163412 TGCGACCATAAAATGCCAAGTC 59.837 45.455 0.00 0.00 0.00 3.01
445 448 5.116180 CGACCATAAAATGCCAAGTCTAGA 58.884 41.667 0.00 0.00 0.00 2.43
447 450 6.260936 CGACCATAAAATGCCAAGTCTAGAAT 59.739 38.462 0.00 0.00 0.00 2.40
454 457 5.904362 ATGCCAAGTCTAGAATTTGAACC 57.096 39.130 16.10 7.63 0.00 3.62
456 459 4.079253 GCCAAGTCTAGAATTTGAACCCA 58.921 43.478 16.10 0.00 0.00 4.51
458 461 5.560724 CCAAGTCTAGAATTTGAACCCAGA 58.439 41.667 16.10 0.00 0.00 3.86
485 488 0.737019 CCAATGCGGGCACAATGAAC 60.737 55.000 0.00 0.00 0.00 3.18
494 497 2.427095 GGGCACAATGAACCTAACCATC 59.573 50.000 0.00 0.00 0.00 3.51
495 498 2.427095 GGCACAATGAACCTAACCATCC 59.573 50.000 0.00 0.00 0.00 3.51
499 502 2.614057 CAATGAACCTAACCATCCGAGC 59.386 50.000 0.00 0.00 0.00 5.03
502 505 2.429610 TGAACCTAACCATCCGAGCTAC 59.570 50.000 0.00 0.00 0.00 3.58
503 506 1.030457 ACCTAACCATCCGAGCTACG 58.970 55.000 0.00 0.00 42.18 3.51
504 507 0.318784 CCTAACCATCCGAGCTACGC 60.319 60.000 0.00 0.00 41.07 4.42
505 508 0.669077 CTAACCATCCGAGCTACGCT 59.331 55.000 0.00 0.00 43.88 5.07
507 510 1.108776 AACCATCCGAGCTACGCTAA 58.891 50.000 0.00 0.00 39.88 3.09
508 511 1.108776 ACCATCCGAGCTACGCTAAA 58.891 50.000 0.00 0.00 39.88 1.85
509 512 1.687123 ACCATCCGAGCTACGCTAAAT 59.313 47.619 0.00 0.00 39.88 1.40
510 513 2.102588 ACCATCCGAGCTACGCTAAATT 59.897 45.455 0.00 0.00 39.88 1.82
511 514 2.731976 CCATCCGAGCTACGCTAAATTC 59.268 50.000 0.00 0.00 39.88 2.17
512 515 3.381045 CATCCGAGCTACGCTAAATTCA 58.619 45.455 0.00 0.00 39.88 2.57
513 516 2.805845 TCCGAGCTACGCTAAATTCAC 58.194 47.619 0.00 0.00 39.88 3.18
514 517 2.426024 TCCGAGCTACGCTAAATTCACT 59.574 45.455 0.00 0.00 39.88 3.41
525 531 5.918576 ACGCTAAATTCACTTTTGTAAAGCC 59.081 36.000 0.00 0.00 0.00 4.35
534 540 9.705290 ATTCACTTTTGTAAAGCCGATTTATTT 57.295 25.926 0.00 0.00 35.83 1.40
543 549 4.654091 AGCCGATTTATTTGGTTCATGG 57.346 40.909 0.00 0.00 0.00 3.66
551 557 6.798315 TTTATTTGGTTCATGGTTTGCATG 57.202 33.333 0.00 0.00 0.00 4.06
552 558 3.834489 TTTGGTTCATGGTTTGCATGT 57.166 38.095 0.00 0.00 0.00 3.21
558 564 5.069648 TGGTTCATGGTTTGCATGTCTTTTA 59.930 36.000 0.00 0.00 0.00 1.52
559 565 5.634859 GGTTCATGGTTTGCATGTCTTTTAG 59.365 40.000 0.00 0.00 0.00 1.85
564 574 6.839124 TGGTTTGCATGTCTTTTAGATCAT 57.161 33.333 0.00 0.00 0.00 2.45
657 668 3.691575 TCTCTTGAATCTCGAGTCTGGT 58.308 45.455 13.13 0.00 0.00 4.00
666 677 1.946768 CTCGAGTCTGGTTGGCAAAAA 59.053 47.619 0.00 0.00 0.00 1.94
669 680 1.341209 GAGTCTGGTTGGCAAAAAGGG 59.659 52.381 0.00 0.00 0.00 3.95
865 887 0.739462 TCGTCATCCATCCGTGCAAC 60.739 55.000 0.00 0.00 0.00 4.17
947 969 4.980805 TATCCCAATCCGCGCGCC 62.981 66.667 27.36 8.11 0.00 6.53
1243 1607 5.744345 CGCGTAACTTCATTCAGATTCTAGT 59.256 40.000 0.00 0.00 0.00 2.57
1252 1616 6.747125 TCATTCAGATTCTAGTCTGCTGATC 58.253 40.000 5.65 0.00 44.15 2.92
1284 1648 1.550065 CGTCATCTTGCCTACTGTCG 58.450 55.000 0.00 0.00 0.00 4.35
1300 1670 3.310227 ACTGTCGCGATTACTCTCTAGTG 59.690 47.826 14.06 0.00 36.36 2.74
1304 1674 5.352293 TGTCGCGATTACTCTCTAGTGTTTA 59.648 40.000 14.06 0.00 36.36 2.01
1310 1680 7.377397 GCGATTACTCTCTAGTGTTTACTCATG 59.623 40.741 0.00 0.00 38.36 3.07
1322 1692 7.921787 AGTGTTTACTCATGTAGTATCTCGAG 58.078 38.462 5.93 5.93 40.41 4.04
1341 1715 2.698797 GAGTGGCATACCTTGTAGGCTA 59.301 50.000 10.25 2.17 39.63 3.93
1347 1721 3.744214 GCATACCTTGTAGGCTACATGCA 60.744 47.826 30.71 21.68 45.15 3.96
1366 1740 4.331108 TGCAGTTATGTTATGGTGCTTGA 58.669 39.130 0.00 0.00 0.00 3.02
1414 1794 3.324930 CTCCTGTGGCTGCCTGGA 61.325 66.667 21.03 20.97 0.00 3.86
1454 1836 0.657840 GTCAGTGTGTGTGCCTGTTC 59.342 55.000 0.00 0.00 0.00 3.18
1456 1838 0.659427 CAGTGTGTGTGCCTGTTCAG 59.341 55.000 0.00 0.00 0.00 3.02
1464 1846 1.340502 TGTGCCTGTTCAGTTGGTGAA 60.341 47.619 0.00 0.00 43.26 3.18
1466 1848 3.146066 GTGCCTGTTCAGTTGGTGAATA 58.854 45.455 0.00 0.00 46.99 1.75
1468 1850 4.037446 GTGCCTGTTCAGTTGGTGAATAAA 59.963 41.667 0.00 0.00 46.99 1.40
1470 1852 5.304101 TGCCTGTTCAGTTGGTGAATAAATT 59.696 36.000 0.00 0.00 46.99 1.82
1472 1854 6.705825 GCCTGTTCAGTTGGTGAATAAATTTT 59.294 34.615 0.00 0.00 46.99 1.82
1473 1855 7.870445 GCCTGTTCAGTTGGTGAATAAATTTTA 59.130 33.333 0.00 0.00 46.99 1.52
1552 1934 0.598065 GTGAGAAGGCCGCAAAACAT 59.402 50.000 0.00 0.00 0.00 2.71
1579 1961 5.057149 GGCGATCTTTCCAAGAGCTTAATA 58.943 41.667 0.00 0.00 41.61 0.98
1597 1979 0.698886 TAGCCCATGCCCAGAATCCT 60.699 55.000 0.00 0.00 38.69 3.24
1702 2084 2.559440 GACCTTGATCTGCATGGAGTC 58.441 52.381 14.43 11.22 42.85 3.36
1711 2093 1.078848 GCATGGAGTCGGAAGCAGT 60.079 57.895 0.00 0.00 0.00 4.40
1726 2108 0.392461 GCAGTCATAACCTGGGCGAA 60.392 55.000 0.00 0.00 0.00 4.70
1773 2157 5.375417 TTTGAACCAACATATGTGCTCAG 57.625 39.130 9.63 0.00 0.00 3.35
1807 2191 2.487762 CACCACATGTACGCATTTTCCT 59.512 45.455 0.00 0.00 31.99 3.36
1981 2385 9.982651 AGATACAATACATAATAACGCTGTTCT 57.017 29.630 0.00 0.00 0.00 3.01
1988 2392 2.175530 ATAACGCTGTTCTCGTCGAG 57.824 50.000 16.33 16.33 39.48 4.04
2074 2478 4.754114 TGCAATTGCTTTACCATTTTGTCC 59.246 37.500 29.37 0.00 42.66 4.02
2101 2505 6.661805 AGTTGTTGTGGTTCTAAGAAGGAAAA 59.338 34.615 0.00 0.00 0.00 2.29
2165 2569 4.982241 TGTGGGAGATCACTTTCTTTCT 57.018 40.909 0.00 0.00 38.40 2.52
2166 2570 4.645535 TGTGGGAGATCACTTTCTTTCTG 58.354 43.478 0.00 0.00 38.40 3.02
2185 2589 0.985549 GTGTGCGAGCTAGAGTTTCG 59.014 55.000 0.00 0.00 37.40 3.46
2197 2601 3.334583 AGAGTTTCGGCAGAGCATTTA 57.665 42.857 0.00 0.00 0.00 1.40
2380 2784 4.748277 AACGGAGGATTAAAGGAATCGA 57.252 40.909 0.00 0.00 44.41 3.59
2418 2822 4.543590 AAGAGTCTTAGTGGACATGGTG 57.456 45.455 2.75 0.00 38.57 4.17
2558 2962 6.381801 CAGTGTTGAGGTATGAAAATGGAAC 58.618 40.000 0.00 0.00 0.00 3.62
2584 2988 4.499183 CGATCTATATGTGGAAGAAGGGC 58.501 47.826 0.00 0.00 0.00 5.19
2633 3037 9.171877 TCAACTGAATAATATGCATGTACAACA 57.828 29.630 10.16 1.45 0.00 3.33
2709 3117 5.626142 TGTGCTTATTCACACCCTTTCTTA 58.374 37.500 0.00 0.00 41.57 2.10
2714 3122 3.782656 TTCACACCCTTTCTTAGACCC 57.217 47.619 0.00 0.00 0.00 4.46
2816 3224 6.434028 TCATTTTGTTCTTAATGGTGCTAGCT 59.566 34.615 17.23 0.00 33.58 3.32
2817 3225 5.880054 TTTGTTCTTAATGGTGCTAGCTC 57.120 39.130 17.23 12.62 0.00 4.09
2818 3226 4.826274 TGTTCTTAATGGTGCTAGCTCT 57.174 40.909 17.23 0.00 0.00 4.09
2819 3227 5.932619 TGTTCTTAATGGTGCTAGCTCTA 57.067 39.130 17.23 11.06 0.00 2.43
2820 3228 6.485830 TGTTCTTAATGGTGCTAGCTCTAT 57.514 37.500 17.23 13.06 0.00 1.98
2821 3229 6.283694 TGTTCTTAATGGTGCTAGCTCTATG 58.716 40.000 17.23 4.62 0.00 2.23
2822 3230 4.887748 TCTTAATGGTGCTAGCTCTATGC 58.112 43.478 17.23 0.04 43.29 3.14
2823 3231 2.557920 AATGGTGCTAGCTCTATGCC 57.442 50.000 17.23 8.82 44.23 4.40
2976 3388 7.117092 GGTAGAGAAGCTTAGTTTTTCTGTCTG 59.883 40.741 11.08 0.00 31.67 3.51
3169 3581 9.045223 GGTTTGAATTTTAGCTGAAGAACATTT 57.955 29.630 0.00 0.00 0.00 2.32
3207 3619 8.008513 TCCAACGAAGCTTAGACTAGATAATT 57.991 34.615 13.94 0.00 0.00 1.40
3252 3664 7.142306 TCGAGACATAATAGTATGCTGTACC 57.858 40.000 10.02 0.00 40.83 3.34
3446 3859 4.522789 CCTTGTAAGGCATGTGGTTAAACT 59.477 41.667 0.00 0.00 39.76 2.66
3554 3972 5.526479 TCGTCGAGAATAACATAGCTGTAGT 59.474 40.000 0.00 0.00 33.36 2.73
3818 4238 0.458543 ACACCGATGTCTGATGACGC 60.459 55.000 0.00 0.00 45.70 5.19
3838 4258 3.725895 CGCTGATTCTTGATGGTTGAACG 60.726 47.826 0.00 0.00 0.00 3.95
3867 4287 0.807496 GTCTTCATGCCTTGCTGACC 59.193 55.000 0.00 0.00 0.00 4.02
3879 4299 4.192317 CCTTGCTGACCTATAACCTGTTC 58.808 47.826 0.00 0.00 0.00 3.18
3924 4344 4.560136 TTTTTATGCTTGCACTCGACAA 57.440 36.364 0.00 0.00 0.00 3.18
3925 4345 4.560136 TTTTATGCTTGCACTCGACAAA 57.440 36.364 0.00 0.00 0.00 2.83
3926 4346 4.764679 TTTATGCTTGCACTCGACAAAT 57.235 36.364 0.00 0.00 0.00 2.32
3927 4347 5.871465 TTTATGCTTGCACTCGACAAATA 57.129 34.783 0.00 0.00 0.00 1.40
3928 4348 6.435430 TTTATGCTTGCACTCGACAAATAT 57.565 33.333 0.00 0.00 0.00 1.28
3929 4349 4.970662 ATGCTTGCACTCGACAAATATT 57.029 36.364 0.00 0.00 0.00 1.28
3930 4350 4.764679 TGCTTGCACTCGACAAATATTT 57.235 36.364 0.00 0.00 0.00 1.40
3931 4351 4.722194 TGCTTGCACTCGACAAATATTTC 58.278 39.130 0.00 0.00 0.00 2.17
3932 4352 4.455533 TGCTTGCACTCGACAAATATTTCT 59.544 37.500 0.00 0.00 0.00 2.52
3933 4353 5.024555 GCTTGCACTCGACAAATATTTCTC 58.975 41.667 0.00 0.00 0.00 2.87
3934 4354 5.545658 TTGCACTCGACAAATATTTCTCC 57.454 39.130 0.00 0.00 0.00 3.71
3935 4355 3.616821 TGCACTCGACAAATATTTCTCCG 59.383 43.478 0.00 2.78 0.00 4.63
3936 4356 3.617263 GCACTCGACAAATATTTCTCCGT 59.383 43.478 0.00 0.00 0.00 4.69
3937 4357 4.092968 GCACTCGACAAATATTTCTCCGTT 59.907 41.667 0.00 0.00 0.00 4.44
3938 4358 5.390567 GCACTCGACAAATATTTCTCCGTTT 60.391 40.000 0.00 0.00 0.00 3.60
3939 4359 6.183360 GCACTCGACAAATATTTCTCCGTTTA 60.183 38.462 0.00 0.00 0.00 2.01
3940 4360 7.171434 CACTCGACAAATATTTCTCCGTTTAC 58.829 38.462 0.00 0.00 0.00 2.01
3941 4361 6.869913 ACTCGACAAATATTTCTCCGTTTACA 59.130 34.615 0.00 0.00 0.00 2.41
3942 4362 7.385752 ACTCGACAAATATTTCTCCGTTTACAA 59.614 33.333 0.00 0.00 0.00 2.41
3943 4363 8.085720 TCGACAAATATTTCTCCGTTTACAAA 57.914 30.769 0.00 0.00 0.00 2.83
3944 4364 8.723311 TCGACAAATATTTCTCCGTTTACAAAT 58.277 29.630 0.00 0.00 0.00 2.32
3945 4365 9.976255 CGACAAATATTTCTCCGTTTACAAATA 57.024 29.630 0.00 0.00 0.00 1.40
3988 4408 8.515473 TTTTATGATTCGGATGTGTATAGACG 57.485 34.615 0.00 0.00 0.00 4.18
3989 4409 5.707242 ATGATTCGGATGTGTATAGACGT 57.293 39.130 0.00 0.00 0.00 4.34
3990 4410 6.812879 ATGATTCGGATGTGTATAGACGTA 57.187 37.500 0.00 0.00 0.00 3.57
3991 4411 6.812879 TGATTCGGATGTGTATAGACGTAT 57.187 37.500 0.00 0.00 0.00 3.06
3992 4412 7.210718 TGATTCGGATGTGTATAGACGTATT 57.789 36.000 0.00 0.00 0.00 1.89
3993 4413 7.654568 TGATTCGGATGTGTATAGACGTATTT 58.345 34.615 0.00 0.00 0.00 1.40
3994 4414 8.139350 TGATTCGGATGTGTATAGACGTATTTT 58.861 33.333 0.00 0.00 0.00 1.82
3995 4415 9.616634 GATTCGGATGTGTATAGACGTATTTTA 57.383 33.333 0.00 0.00 0.00 1.52
3996 4416 9.622004 ATTCGGATGTGTATAGACGTATTTTAG 57.378 33.333 0.00 0.00 0.00 1.85
3997 4417 8.158169 TCGGATGTGTATAGACGTATTTTAGT 57.842 34.615 0.00 0.00 0.00 2.24
3998 4418 8.071967 TCGGATGTGTATAGACGTATTTTAGTG 58.928 37.037 0.00 0.00 0.00 2.74
3999 4419 7.859377 CGGATGTGTATAGACGTATTTTAGTGT 59.141 37.037 0.00 0.00 0.00 3.55
4000 4420 8.965172 GGATGTGTATAGACGTATTTTAGTGTG 58.035 37.037 0.00 0.00 0.00 3.82
4001 4421 9.512435 GATGTGTATAGACGTATTTTAGTGTGT 57.488 33.333 0.00 0.00 0.00 3.72
4002 4422 9.865321 ATGTGTATAGACGTATTTTAGTGTGTT 57.135 29.630 0.00 0.00 0.00 3.32
4003 4423 9.695526 TGTGTATAGACGTATTTTAGTGTGTTT 57.304 29.630 0.00 0.00 0.00 2.83
4004 4424 9.947897 GTGTATAGACGTATTTTAGTGTGTTTG 57.052 33.333 0.00 0.00 0.00 2.93
4005 4425 9.695526 TGTATAGACGTATTTTAGTGTGTTTGT 57.304 29.630 0.00 0.00 0.00 2.83
4029 4449 9.952030 TGTTTATTCATTTCAGTATGTAGTCCA 57.048 29.630 0.00 0.00 37.40 4.02
4246 4669 4.719369 GCCCGCACGACTCGTCTT 62.719 66.667 0.00 0.00 38.32 3.01
4252 4675 4.719369 ACGACTCGTCTTGGCCGC 62.719 66.667 0.00 0.00 33.69 6.53
4308 4764 2.433664 CAGTAACCACGCGTCCCC 60.434 66.667 9.86 0.00 0.00 4.81
4484 4984 3.715287 TGTATGGGCTGGTCTACTACAA 58.285 45.455 0.00 0.00 0.00 2.41
4488 4988 5.968676 ATGGGCTGGTCTACTACAATTAA 57.031 39.130 0.00 0.00 0.00 1.40
4664 5195 2.625790 TGATAGTTTTTGGTGTGTGGGC 59.374 45.455 0.00 0.00 0.00 5.36
4669 5200 3.783362 TTTGGTGTGTGGGCGAGGG 62.783 63.158 0.00 0.00 0.00 4.30
4672 5203 4.394712 GTGTGTGGGCGAGGGGAG 62.395 72.222 0.00 0.00 0.00 4.30
4673 5204 4.631740 TGTGTGGGCGAGGGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
4687 5218 2.512515 GAGACGAGCATGTGGGCC 60.513 66.667 0.00 0.00 0.00 5.80
4703 5234 2.788807 TGGGCCATGGTGGTATCTTTAT 59.211 45.455 14.67 0.00 40.46 1.40
4737 5268 3.991367 ACTAACACTAGACAGTTGCCAC 58.009 45.455 0.00 0.00 30.46 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.840635 AGAGATCAAGGCAAGGGGTAC 59.159 52.381 0.00 0.00 0.00 3.34
12 13 2.119495 GAGAGATCAAGGCAAGGGGTA 58.881 52.381 0.00 0.00 0.00 3.69
13 14 0.915364 GAGAGATCAAGGCAAGGGGT 59.085 55.000 0.00 0.00 0.00 4.95
14 15 0.182299 GGAGAGATCAAGGCAAGGGG 59.818 60.000 0.00 0.00 0.00 4.79
15 16 0.179062 CGGAGAGATCAAGGCAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
16 17 0.813210 GCGGAGAGATCAAGGCAAGG 60.813 60.000 0.00 0.00 0.00 3.61
17 18 0.177604 AGCGGAGAGATCAAGGCAAG 59.822 55.000 0.00 0.00 0.00 4.01
18 19 0.176680 GAGCGGAGAGATCAAGGCAA 59.823 55.000 0.00 0.00 34.89 4.52
19 20 1.680522 GGAGCGGAGAGATCAAGGCA 61.681 60.000 0.00 0.00 36.90 4.75
20 21 1.068921 GGAGCGGAGAGATCAAGGC 59.931 63.158 0.00 0.00 36.90 4.35
21 22 0.673437 GAGGAGCGGAGAGATCAAGG 59.327 60.000 0.00 0.00 36.90 3.61
22 23 0.310543 CGAGGAGCGGAGAGATCAAG 59.689 60.000 0.00 0.00 36.90 3.02
23 24 1.729470 GCGAGGAGCGGAGAGATCAA 61.729 60.000 0.00 0.00 41.29 2.57
24 25 2.190170 GCGAGGAGCGGAGAGATCA 61.190 63.158 0.00 0.00 41.29 2.92
25 26 2.642700 GCGAGGAGCGGAGAGATC 59.357 66.667 0.00 0.00 41.29 2.75
35 36 4.093291 AGGCTGGCTTGCGAGGAG 62.093 66.667 2.37 0.00 0.00 3.69
36 37 4.399395 CAGGCTGGCTTGCGAGGA 62.399 66.667 6.61 0.00 0.00 3.71
38 39 4.711949 ACCAGGCTGGCTTGCGAG 62.712 66.667 33.04 7.53 42.67 5.03
41 42 3.060615 CTCACCAGGCTGGCTTGC 61.061 66.667 33.04 0.00 42.67 4.01
42 43 2.360852 CCTCACCAGGCTGGCTTG 60.361 66.667 33.04 23.88 42.67 4.01
61 62 3.382832 AAGACCTCCTCACGGGCG 61.383 66.667 0.00 0.00 33.64 6.13
62 63 2.266055 CAAGACCTCCTCACGGGC 59.734 66.667 0.00 0.00 34.39 6.13
63 64 2.266055 GCAAGACCTCCTCACGGG 59.734 66.667 0.00 0.00 0.00 5.28
64 65 2.125912 CGCAAGACCTCCTCACGG 60.126 66.667 0.00 0.00 43.02 4.94
65 66 1.444553 GACGCAAGACCTCCTCACG 60.445 63.158 0.00 0.00 43.62 4.35
66 67 1.444553 CGACGCAAGACCTCCTCAC 60.445 63.158 0.00 0.00 43.62 3.51
67 68 1.863662 GACGACGCAAGACCTCCTCA 61.864 60.000 0.00 0.00 43.62 3.86
68 69 1.153997 GACGACGCAAGACCTCCTC 60.154 63.158 0.00 0.00 43.62 3.71
69 70 2.637383 GGACGACGCAAGACCTCCT 61.637 63.158 0.00 0.00 43.62 3.69
70 71 2.126031 GGACGACGCAAGACCTCC 60.126 66.667 0.00 0.00 43.62 4.30
71 72 2.504244 CGGACGACGCAAGACCTC 60.504 66.667 0.00 0.00 43.62 3.85
88 89 3.056328 GGTCAAGCCTTGCGGGAC 61.056 66.667 0.00 0.00 36.37 4.46
89 90 4.344865 GGGTCAAGCCTTGCGGGA 62.345 66.667 0.00 0.00 37.23 5.14
91 92 4.351054 AGGGGTCAAGCCTTGCGG 62.351 66.667 0.00 0.00 37.43 5.69
92 93 2.747855 GAGGGGTCAAGCCTTGCG 60.748 66.667 0.00 0.00 37.43 4.85
93 94 2.747855 CGAGGGGTCAAGCCTTGC 60.748 66.667 0.00 0.00 37.43 4.01
94 95 2.747855 GCGAGGGGTCAAGCCTTG 60.748 66.667 0.00 0.00 37.43 3.61
95 96 4.394712 CGCGAGGGGTCAAGCCTT 62.395 66.667 0.00 0.00 37.43 4.35
97 98 4.821589 CTCGCGAGGGGTCAAGCC 62.822 72.222 28.40 0.00 0.00 4.35
107 108 1.153939 CACTCAAGACCCTCGCGAG 60.154 63.158 29.06 29.06 0.00 5.03
108 109 1.461091 AACACTCAAGACCCTCGCGA 61.461 55.000 9.26 9.26 0.00 5.87
109 110 0.600255 AAACACTCAAGACCCTCGCG 60.600 55.000 0.00 0.00 0.00 5.87
110 111 0.868406 CAAACACTCAAGACCCTCGC 59.132 55.000 0.00 0.00 0.00 5.03
111 112 2.240493 ACAAACACTCAAGACCCTCG 57.760 50.000 0.00 0.00 0.00 4.63
112 113 2.618709 CCAACAAACACTCAAGACCCTC 59.381 50.000 0.00 0.00 0.00 4.30
113 114 2.025321 ACCAACAAACACTCAAGACCCT 60.025 45.455 0.00 0.00 0.00 4.34
114 115 2.099098 CACCAACAAACACTCAAGACCC 59.901 50.000 0.00 0.00 0.00 4.46
115 116 3.013921 TCACCAACAAACACTCAAGACC 58.986 45.455 0.00 0.00 0.00 3.85
116 117 4.394920 TCTTCACCAACAAACACTCAAGAC 59.605 41.667 0.00 0.00 0.00 3.01
117 118 4.584874 TCTTCACCAACAAACACTCAAGA 58.415 39.130 0.00 0.00 0.00 3.02
118 119 4.963276 TCTTCACCAACAAACACTCAAG 57.037 40.909 0.00 0.00 0.00 3.02
119 120 5.530915 CCTATCTTCACCAACAAACACTCAA 59.469 40.000 0.00 0.00 0.00 3.02
120 121 5.063204 CCTATCTTCACCAACAAACACTCA 58.937 41.667 0.00 0.00 0.00 3.41
121 122 4.083271 GCCTATCTTCACCAACAAACACTC 60.083 45.833 0.00 0.00 0.00 3.51
122 123 3.821033 GCCTATCTTCACCAACAAACACT 59.179 43.478 0.00 0.00 0.00 3.55
123 124 3.057526 GGCCTATCTTCACCAACAAACAC 60.058 47.826 0.00 0.00 0.00 3.32
124 125 3.153919 GGCCTATCTTCACCAACAAACA 58.846 45.455 0.00 0.00 0.00 2.83
125 126 2.161609 CGGCCTATCTTCACCAACAAAC 59.838 50.000 0.00 0.00 0.00 2.93
126 127 2.224670 ACGGCCTATCTTCACCAACAAA 60.225 45.455 0.00 0.00 0.00 2.83
127 128 1.349688 ACGGCCTATCTTCACCAACAA 59.650 47.619 0.00 0.00 0.00 2.83
128 129 0.981183 ACGGCCTATCTTCACCAACA 59.019 50.000 0.00 0.00 0.00 3.33
129 130 2.547826 GTACGGCCTATCTTCACCAAC 58.452 52.381 0.00 0.00 0.00 3.77
130 131 1.135527 CGTACGGCCTATCTTCACCAA 59.864 52.381 7.57 0.00 0.00 3.67
131 132 0.742505 CGTACGGCCTATCTTCACCA 59.257 55.000 7.57 0.00 0.00 4.17
132 133 0.031721 CCGTACGGCCTATCTTCACC 59.968 60.000 23.44 0.00 0.00 4.02
133 134 0.031721 CCCGTACGGCCTATCTTCAC 59.968 60.000 29.15 0.00 0.00 3.18
134 135 2.422303 CCCGTACGGCCTATCTTCA 58.578 57.895 29.15 0.00 0.00 3.02
178 179 4.711949 AGACTTGCCTGCCTGCGG 62.712 66.667 0.00 0.00 0.00 5.69
179 180 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
180 181 3.060615 CCAGACTTGCCTGCCTGC 61.061 66.667 0.00 0.00 32.97 4.85
181 182 2.360852 CCCAGACTTGCCTGCCTG 60.361 66.667 0.00 0.00 32.97 4.85
182 183 3.655211 CCCCAGACTTGCCTGCCT 61.655 66.667 0.00 0.00 32.97 4.75
183 184 3.650950 TCCCCAGACTTGCCTGCC 61.651 66.667 0.00 0.00 32.97 4.85
184 185 2.360475 GTCCCCAGACTTGCCTGC 60.360 66.667 0.00 0.00 40.10 4.85
185 186 2.352805 GGTCCCCAGACTTGCCTG 59.647 66.667 0.00 0.00 43.05 4.85
186 187 2.936032 GGGTCCCCAGACTTGCCT 60.936 66.667 0.00 0.00 43.05 4.75
187 188 4.048470 GGGGTCCCCAGACTTGCC 62.048 72.222 23.53 0.00 44.65 4.52
198 199 2.931649 TTCTGGGAACGGGGGTCC 60.932 66.667 0.00 0.00 37.31 4.46
199 200 2.350134 GTTCTGGGAACGGGGGTC 59.650 66.667 0.00 0.00 37.31 4.46
200 201 3.633116 CGTTCTGGGAACGGGGGT 61.633 66.667 20.56 0.00 39.73 4.95
204 205 2.287457 TATCGGCGTTCTGGGAACGG 62.287 60.000 26.41 15.26 43.25 4.44
205 206 0.870307 CTATCGGCGTTCTGGGAACG 60.870 60.000 22.95 22.95 45.56 3.95
206 207 1.152383 GCTATCGGCGTTCTGGGAAC 61.152 60.000 6.85 0.82 0.00 3.62
207 208 1.143183 GCTATCGGCGTTCTGGGAA 59.857 57.895 6.85 0.00 0.00 3.97
208 209 2.792947 GGCTATCGGCGTTCTGGGA 61.793 63.158 6.85 0.00 42.94 4.37
209 210 2.280186 GGCTATCGGCGTTCTGGG 60.280 66.667 6.85 0.00 42.94 4.45
217 218 1.719709 GGTTTTCACGGCTATCGGC 59.280 57.895 0.00 0.00 44.45 5.54
218 219 1.426041 CCGGTTTTCACGGCTATCGG 61.426 60.000 0.00 0.00 45.34 4.18
219 220 2.003672 CCGGTTTTCACGGCTATCG 58.996 57.895 0.00 0.00 45.34 2.92
235 236 1.946768 ACACATGGTTTCTTGACACCG 59.053 47.619 0.00 0.00 35.60 4.94
252 253 4.408182 AGGCTAGACCAATGTATCACAC 57.592 45.455 0.00 0.00 43.14 3.82
261 262 8.879427 ATAACTTTACAAAAGGCTAGACCAAT 57.121 30.769 0.00 0.00 43.14 3.16
307 310 6.534059 ACGTTAATCTCAAAATGATGTGTCG 58.466 36.000 0.00 0.00 0.00 4.35
346 349 5.989477 AGACATTCCCATCGACTATGAAAA 58.011 37.500 0.00 0.00 37.86 2.29
362 365 3.735514 GCGTCTAGTGGAAGGAGACATTC 60.736 52.174 0.00 0.00 39.70 2.67
365 368 1.174783 GCGTCTAGTGGAAGGAGACA 58.825 55.000 0.00 0.00 39.70 3.41
366 369 1.402613 GAGCGTCTAGTGGAAGGAGAC 59.597 57.143 0.00 0.00 36.95 3.36
370 373 1.268794 CGATGAGCGTCTAGTGGAAGG 60.269 57.143 0.00 0.00 34.64 3.46
391 394 7.518188 TCCTGGATTTATTTTAGGCCTTCTAG 58.482 38.462 12.58 6.91 0.00 2.43
393 396 6.341408 TCCTGGATTTATTTTAGGCCTTCT 57.659 37.500 12.58 0.00 0.00 2.85
398 401 6.200854 CGCATTTTCCTGGATTTATTTTAGGC 59.799 38.462 0.00 0.00 0.00 3.93
399 402 7.435192 GTCGCATTTTCCTGGATTTATTTTAGG 59.565 37.037 0.00 0.00 0.00 2.69
411 414 4.448537 TTTTATGGTCGCATTTTCCTGG 57.551 40.909 0.00 0.00 0.00 4.45
415 418 4.180057 TGGCATTTTATGGTCGCATTTTC 58.820 39.130 0.00 0.00 0.00 2.29
422 425 5.116180 TCTAGACTTGGCATTTTATGGTCG 58.884 41.667 0.00 0.00 0.00 4.79
426 429 9.859427 TTCAAATTCTAGACTTGGCATTTTATG 57.141 29.630 11.91 0.00 0.00 1.90
428 431 8.303876 GGTTCAAATTCTAGACTTGGCATTTTA 58.696 33.333 11.91 0.00 0.00 1.52
429 432 7.154656 GGTTCAAATTCTAGACTTGGCATTTT 58.845 34.615 11.91 0.00 0.00 1.82
430 433 6.295292 GGGTTCAAATTCTAGACTTGGCATTT 60.295 38.462 11.91 3.70 0.00 2.32
441 444 4.884164 GGTCCATCTGGGTTCAAATTCTAG 59.116 45.833 0.00 0.00 38.11 2.43
445 448 3.165071 GTGGTCCATCTGGGTTCAAATT 58.835 45.455 0.00 0.00 38.11 1.82
447 450 1.203001 GGTGGTCCATCTGGGTTCAAA 60.203 52.381 0.00 0.00 38.11 2.69
454 457 1.378882 CGCATTGGTGGTCCATCTGG 61.379 60.000 3.19 0.00 43.91 3.86
456 459 1.077501 CCGCATTGGTGGTCCATCT 60.078 57.895 3.19 0.00 43.91 2.90
458 461 2.044053 CCCGCATTGGTGGTCCAT 60.044 61.111 0.00 0.00 43.91 3.41
474 477 2.427095 GGATGGTTAGGTTCATTGTGCC 59.573 50.000 0.00 0.00 0.00 5.01
475 478 2.097466 CGGATGGTTAGGTTCATTGTGC 59.903 50.000 0.00 0.00 0.00 4.57
485 488 3.867723 CGTAGCTCGGATGGTTAGG 57.132 57.895 0.00 0.00 35.71 2.69
499 502 7.270579 GGCTTTACAAAAGTGAATTTAGCGTAG 59.729 37.037 1.72 0.00 0.00 3.51
502 505 5.059221 CGGCTTTACAAAAGTGAATTTAGCG 59.941 40.000 1.72 0.00 0.00 4.26
503 506 6.146898 TCGGCTTTACAAAAGTGAATTTAGC 58.853 36.000 1.72 0.00 0.00 3.09
504 507 8.742554 AATCGGCTTTACAAAAGTGAATTTAG 57.257 30.769 1.72 0.00 0.00 1.85
507 510 9.705290 AATAAATCGGCTTTACAAAAGTGAATT 57.295 25.926 1.72 3.10 32.23 2.17
508 511 9.705290 AAATAAATCGGCTTTACAAAAGTGAAT 57.295 25.926 1.72 0.00 32.23 2.57
509 512 8.973378 CAAATAAATCGGCTTTACAAAAGTGAA 58.027 29.630 1.72 0.00 32.23 3.18
510 513 7.596995 CCAAATAAATCGGCTTTACAAAAGTGA 59.403 33.333 1.72 1.34 32.23 3.41
511 514 7.383843 ACCAAATAAATCGGCTTTACAAAAGTG 59.616 33.333 1.72 0.00 32.23 3.16
512 515 7.438564 ACCAAATAAATCGGCTTTACAAAAGT 58.561 30.769 1.72 0.00 32.23 2.66
513 516 7.883229 ACCAAATAAATCGGCTTTACAAAAG 57.117 32.000 0.00 0.00 32.23 2.27
514 517 7.926555 TGAACCAAATAAATCGGCTTTACAAAA 59.073 29.630 0.00 0.00 32.23 2.44
525 531 5.636965 TGCAAACCATGAACCAAATAAATCG 59.363 36.000 0.00 0.00 0.00 3.34
543 549 6.624423 ACCATGATCTAAAAGACATGCAAAC 58.376 36.000 0.00 0.00 34.94 2.93
551 557 7.320443 TGCACATAACCATGATCTAAAAGAC 57.680 36.000 0.00 0.00 35.96 3.01
552 558 8.523915 AATGCACATAACCATGATCTAAAAGA 57.476 30.769 0.00 0.00 35.96 2.52
558 564 5.301045 CCTCAAATGCACATAACCATGATCT 59.699 40.000 0.00 0.00 35.96 2.75
559 565 5.068198 ACCTCAAATGCACATAACCATGATC 59.932 40.000 0.00 0.00 35.96 2.92
564 574 4.148079 TGAACCTCAAATGCACATAACCA 58.852 39.130 0.00 0.00 0.00 3.67
669 680 4.223255 AGGCAGAGAACTAAAGAGGGTAAC 59.777 45.833 0.00 0.00 0.00 2.50
716 738 1.553248 CAATTGGACCGACTACCCTCA 59.447 52.381 0.00 0.00 0.00 3.86
865 887 1.302511 CTGGTGGGGTTGACGAAGG 60.303 63.158 0.00 0.00 0.00 3.46
951 973 2.674563 TTTATGAGGGATGGGCGCGG 62.675 60.000 8.83 0.00 34.07 6.46
952 974 0.606401 ATTTATGAGGGATGGGCGCG 60.606 55.000 0.00 0.00 34.07 6.86
953 975 1.168714 GATTTATGAGGGATGGGCGC 58.831 55.000 0.00 0.00 0.00 6.53
954 976 1.442769 CGATTTATGAGGGATGGGCG 58.557 55.000 0.00 0.00 0.00 6.13
955 977 1.168714 GCGATTTATGAGGGATGGGC 58.831 55.000 0.00 0.00 0.00 5.36
956 978 1.826385 GGCGATTTATGAGGGATGGG 58.174 55.000 0.00 0.00 0.00 4.00
1243 1607 1.446099 GCAACGACGGATCAGCAGA 60.446 57.895 0.00 0.00 0.00 4.26
1284 1648 6.783162 TGAGTAAACACTAGAGAGTAATCGC 58.217 40.000 0.00 0.00 33.32 4.58
1300 1670 7.133513 CCACTCGAGATACTACATGAGTAAAC 58.866 42.308 21.68 3.00 43.96 2.01
1304 1674 3.566322 GCCACTCGAGATACTACATGAGT 59.434 47.826 21.68 1.10 42.69 3.41
1310 1680 4.073549 AGGTATGCCACTCGAGATACTAC 58.926 47.826 21.68 12.72 37.19 2.73
1319 1689 1.806623 GCCTACAAGGTATGCCACTCG 60.807 57.143 1.54 0.00 37.80 4.18
1322 1692 2.169769 TGTAGCCTACAAGGTATGCCAC 59.830 50.000 1.10 0.00 37.80 5.01
1341 1715 4.272489 AGCACCATAACATAACTGCATGT 58.728 39.130 0.00 0.00 40.90 3.21
1347 1721 9.277783 GATAAGATCAAGCACCATAACATAACT 57.722 33.333 0.00 0.00 0.00 2.24
1414 1794 6.291377 TGACACAGCAAGAGAAAGAAGTAAT 58.709 36.000 0.00 0.00 0.00 1.89
1472 1854 9.687210 AGTTTTTACATATCGACGATTAGCATA 57.313 29.630 16.73 0.00 0.00 3.14
1473 1855 8.589335 AGTTTTTACATATCGACGATTAGCAT 57.411 30.769 16.73 0.00 0.00 3.79
1579 1961 0.698886 TAGGATTCTGGGCATGGGCT 60.699 55.000 0.00 0.00 40.87 5.19
1597 1979 2.432444 CAAAATTCCTCTGCCACCGTA 58.568 47.619 0.00 0.00 0.00 4.02
1702 2084 1.656652 CCAGGTTATGACTGCTTCCG 58.343 55.000 0.00 0.00 34.65 4.30
1711 2093 1.475034 GCAGATTCGCCCAGGTTATGA 60.475 52.381 0.00 0.00 0.00 2.15
1726 2108 8.773033 AAAAGGAATTACCATGATTAGCAGAT 57.227 30.769 0.00 0.00 42.04 2.90
1753 2135 2.749076 GCTGAGCACATATGTTGGTTCA 59.251 45.455 5.37 8.85 0.00 3.18
1754 2136 2.749076 TGCTGAGCACATATGTTGGTTC 59.251 45.455 1.40 4.44 31.71 3.62
1756 2138 2.362736 CTGCTGAGCACATATGTTGGT 58.637 47.619 1.40 7.60 33.79 3.67
1757 2139 1.674441 CCTGCTGAGCACATATGTTGG 59.326 52.381 1.40 0.00 33.79 3.77
1758 2140 1.065102 GCCTGCTGAGCACATATGTTG 59.935 52.381 1.40 3.38 33.79 3.33
1759 2141 1.386533 GCCTGCTGAGCACATATGTT 58.613 50.000 1.40 0.00 33.79 2.71
1760 2142 0.812811 CGCCTGCTGAGCACATATGT 60.813 55.000 1.40 1.41 33.79 2.29
1761 2143 0.812811 ACGCCTGCTGAGCACATATG 60.813 55.000 1.40 0.00 33.79 1.78
1762 2144 0.812811 CACGCCTGCTGAGCACATAT 60.813 55.000 1.40 0.00 33.79 1.78
1763 2145 1.448365 CACGCCTGCTGAGCACATA 60.448 57.895 1.40 0.00 33.79 2.29
1764 2146 2.745100 CACGCCTGCTGAGCACAT 60.745 61.111 1.40 0.00 33.79 3.21
1773 2157 1.299089 GTGGTGAAAACACGCCTGC 60.299 57.895 0.00 0.00 40.63 4.85
1807 2191 6.403866 AGTTTGATGTTTGCAAAGGTATCA 57.596 33.333 20.91 20.91 36.06 2.15
1974 2378 1.081108 ACTGCTCGACGAGAACAGC 60.081 57.895 28.43 13.75 44.66 4.40
1981 2385 1.211969 GGCTAACACTGCTCGACGA 59.788 57.895 0.00 0.00 0.00 4.20
1988 2392 3.604582 AGATTTGAGAGGCTAACACTGC 58.395 45.455 0.00 0.00 0.00 4.40
2074 2478 6.522054 TCCTTCTTAGAACCACAACAACTAG 58.478 40.000 0.00 0.00 0.00 2.57
2151 2555 3.494626 TCGCACACAGAAAGAAAGTGATC 59.505 43.478 0.00 0.00 37.05 2.92
2165 2569 1.666023 CGAAACTCTAGCTCGCACACA 60.666 52.381 0.00 0.00 0.00 3.72
2166 2570 0.985549 CGAAACTCTAGCTCGCACAC 59.014 55.000 0.00 0.00 0.00 3.82
2185 2589 3.448660 AGTTCCCAAATAAATGCTCTGCC 59.551 43.478 0.00 0.00 0.00 4.85
2315 2719 3.228453 TCTATTACCCCCTTACTGCTCG 58.772 50.000 0.00 0.00 0.00 5.03
2380 2784 3.071602 ACTCTTAACAGGCAGACATGTGT 59.928 43.478 1.15 0.00 0.00 3.72
2418 2822 7.361885 GCAATGATATTTCCATCTGGTCAGATC 60.362 40.741 10.24 0.00 45.78 2.75
2511 2915 0.393537 CCTGGATCTGCTTCACCACC 60.394 60.000 0.00 0.00 0.00 4.61
2558 2962 5.372547 TTCTTCCACATATAGATCGGACG 57.627 43.478 0.00 0.00 0.00 4.79
2709 3117 4.351111 ACTCAGATTTACCAACTTGGGTCT 59.649 41.667 12.62 7.02 43.37 3.85
2714 3122 8.783093 TCACAATAACTCAGATTTACCAACTTG 58.217 33.333 0.00 0.00 0.00 3.16
2759 3167 0.878416 GCAGTACAATCCAAACCGCA 59.122 50.000 0.00 0.00 0.00 5.69
2762 3170 1.917872 TGGGCAGTACAATCCAAACC 58.082 50.000 0.00 0.00 0.00 3.27
2763 3171 5.451798 CCAATATGGGCAGTACAATCCAAAC 60.452 44.000 0.00 0.00 32.67 2.93
2799 3207 5.300752 GCATAGAGCTAGCACCATTAAGAA 58.699 41.667 18.83 0.00 41.15 2.52
2816 3224 7.015584 TGACAAGCTTTATGATAGAGGCATAGA 59.984 37.037 0.00 0.00 30.61 1.98
2817 3225 7.117523 GTGACAAGCTTTATGATAGAGGCATAG 59.882 40.741 0.00 0.00 30.61 2.23
2818 3226 6.931281 GTGACAAGCTTTATGATAGAGGCATA 59.069 38.462 0.00 0.00 0.00 3.14
2819 3227 5.762218 GTGACAAGCTTTATGATAGAGGCAT 59.238 40.000 0.00 0.00 0.00 4.40
2820 3228 5.104776 AGTGACAAGCTTTATGATAGAGGCA 60.105 40.000 0.00 0.00 0.00 4.75
2821 3229 5.363939 AGTGACAAGCTTTATGATAGAGGC 58.636 41.667 0.00 0.00 0.00 4.70
2822 3230 6.481644 GGAAGTGACAAGCTTTATGATAGAGG 59.518 42.308 0.00 0.00 0.00 3.69
2823 3231 6.481644 GGGAAGTGACAAGCTTTATGATAGAG 59.518 42.308 0.00 0.00 0.00 2.43
2976 3388 8.700439 AGGACTCCAGAATTATAGAACTCTAC 57.300 38.462 0.00 0.00 0.00 2.59
3132 3544 7.552687 AGCTAAAATTCAAACCTGATGTCGATA 59.447 33.333 0.00 0.00 0.00 2.92
3140 3552 7.068103 TGTTCTTCAGCTAAAATTCAAACCTGA 59.932 33.333 0.00 0.00 0.00 3.86
3169 3581 8.902540 AAGCTTCGTTGGATATATGATTACAA 57.097 30.769 0.00 0.00 0.00 2.41
3179 3591 7.768807 ATCTAGTCTAAGCTTCGTTGGATAT 57.231 36.000 0.00 0.00 0.00 1.63
3184 3596 8.635877 ACAATTATCTAGTCTAAGCTTCGTTG 57.364 34.615 0.00 0.00 0.00 4.10
3207 3619 1.993956 ACAAAAGGGCACAGCATACA 58.006 45.000 0.00 0.00 0.00 2.29
3252 3664 1.667724 GGGTGAGCATGAAGATTCACG 59.332 52.381 0.00 0.00 40.55 4.35
3446 3859 5.084818 TCTCCTGCAAATTCATCGTCTAA 57.915 39.130 0.00 0.00 0.00 2.10
3532 3950 7.377397 CAGAACTACAGCTATGTTATTCTCGAC 59.623 40.741 0.00 0.00 38.98 4.20
3533 3951 7.282450 TCAGAACTACAGCTATGTTATTCTCGA 59.718 37.037 0.00 0.00 38.98 4.04
3554 3972 2.028476 CACCCTCGTTACCACATCAGAA 60.028 50.000 0.00 0.00 0.00 3.02
3598 4017 1.604308 CAACAGGCCTCCATGCACA 60.604 57.895 0.00 0.00 0.00 4.57
3818 4238 5.566623 CATCGTTCAACCATCAAGAATCAG 58.433 41.667 0.00 0.00 0.00 2.90
3838 4258 1.669779 GGCATGAAGACTGACAGCATC 59.330 52.381 1.25 0.00 0.00 3.91
3867 4287 6.260936 AGCCATCGAAATTGAACAGGTTATAG 59.739 38.462 0.00 0.00 0.00 1.31
3879 4299 4.396166 ACCTTGTAGAAGCCATCGAAATTG 59.604 41.667 0.00 0.00 0.00 2.32
3907 4327 6.316140 AGAAATATTTGTCGAGTGCAAGCATA 59.684 34.615 5.17 0.00 0.00 3.14
3908 4328 4.970662 AATATTTGTCGAGTGCAAGCAT 57.029 36.364 0.00 0.00 0.00 3.79
3909 4329 4.455533 AGAAATATTTGTCGAGTGCAAGCA 59.544 37.500 5.17 0.00 0.00 3.91
3910 4330 4.974591 AGAAATATTTGTCGAGTGCAAGC 58.025 39.130 5.17 0.00 0.00 4.01
3911 4331 5.563842 GGAGAAATATTTGTCGAGTGCAAG 58.436 41.667 16.59 0.00 31.78 4.01
3913 4333 3.616821 CGGAGAAATATTTGTCGAGTGCA 59.383 43.478 16.59 0.00 31.78 4.57
3914 4334 3.617263 ACGGAGAAATATTTGTCGAGTGC 59.383 43.478 16.59 4.45 31.78 4.40
3915 4335 5.779806 AACGGAGAAATATTTGTCGAGTG 57.220 39.130 18.75 11.94 31.78 3.51
3916 4336 6.869913 TGTAAACGGAGAAATATTTGTCGAGT 59.130 34.615 16.59 15.64 31.78 4.18
3917 4337 7.285783 TGTAAACGGAGAAATATTTGTCGAG 57.714 36.000 16.59 15.13 31.78 4.04
3918 4338 7.655236 TTGTAAACGGAGAAATATTTGTCGA 57.345 32.000 16.59 0.00 31.78 4.20
3919 4339 8.889849 ATTTGTAAACGGAGAAATATTTGTCG 57.110 30.769 16.59 14.23 31.78 4.35
3962 4382 8.974408 CGTCTATACACATCCGAATCATAAAAA 58.026 33.333 0.00 0.00 0.00 1.94
3963 4383 8.139350 ACGTCTATACACATCCGAATCATAAAA 58.861 33.333 0.00 0.00 0.00 1.52
3964 4384 7.654568 ACGTCTATACACATCCGAATCATAAA 58.345 34.615 0.00 0.00 0.00 1.40
3965 4385 7.210718 ACGTCTATACACATCCGAATCATAA 57.789 36.000 0.00 0.00 0.00 1.90
3966 4386 6.812879 ACGTCTATACACATCCGAATCATA 57.187 37.500 0.00 0.00 0.00 2.15
3967 4387 5.707242 ACGTCTATACACATCCGAATCAT 57.293 39.130 0.00 0.00 0.00 2.45
3968 4388 6.812879 ATACGTCTATACACATCCGAATCA 57.187 37.500 0.00 0.00 0.00 2.57
3969 4389 8.516811 AAAATACGTCTATACACATCCGAATC 57.483 34.615 0.00 0.00 0.00 2.52
3970 4390 9.622004 CTAAAATACGTCTATACACATCCGAAT 57.378 33.333 0.00 0.00 0.00 3.34
3971 4391 8.623903 ACTAAAATACGTCTATACACATCCGAA 58.376 33.333 0.00 0.00 0.00 4.30
3972 4392 8.071967 CACTAAAATACGTCTATACACATCCGA 58.928 37.037 0.00 0.00 0.00 4.55
3973 4393 7.859377 ACACTAAAATACGTCTATACACATCCG 59.141 37.037 0.00 0.00 0.00 4.18
3974 4394 8.965172 CACACTAAAATACGTCTATACACATCC 58.035 37.037 0.00 0.00 0.00 3.51
3975 4395 9.512435 ACACACTAAAATACGTCTATACACATC 57.488 33.333 0.00 0.00 0.00 3.06
3976 4396 9.865321 AACACACTAAAATACGTCTATACACAT 57.135 29.630 0.00 0.00 0.00 3.21
3977 4397 9.695526 AAACACACTAAAATACGTCTATACACA 57.304 29.630 0.00 0.00 0.00 3.72
3978 4398 9.947897 CAAACACACTAAAATACGTCTATACAC 57.052 33.333 0.00 0.00 0.00 2.90
3979 4399 9.695526 ACAAACACACTAAAATACGTCTATACA 57.304 29.630 0.00 0.00 0.00 2.29
4003 4423 9.952030 TGGACTACATACTGAAATGAATAAACA 57.048 29.630 2.61 0.00 0.00 2.83
4037 4457 9.140286 CGACGTCCAACAAATATTATGAGATAT 57.860 33.333 10.58 0.00 0.00 1.63
4038 4458 8.354426 TCGACGTCCAACAAATATTATGAGATA 58.646 33.333 10.58 0.00 0.00 1.98
4039 4459 7.207383 TCGACGTCCAACAAATATTATGAGAT 58.793 34.615 10.58 0.00 0.00 2.75
4040 4460 6.566141 TCGACGTCCAACAAATATTATGAGA 58.434 36.000 10.58 0.00 0.00 3.27
4041 4461 6.822073 TCGACGTCCAACAAATATTATGAG 57.178 37.500 10.58 0.00 0.00 2.90
4042 4462 8.757789 GTTATCGACGTCCAACAAATATTATGA 58.242 33.333 10.58 0.00 0.00 2.15
4043 4463 8.761497 AGTTATCGACGTCCAACAAATATTATG 58.239 33.333 18.85 0.00 0.00 1.90
4044 4464 8.761497 CAGTTATCGACGTCCAACAAATATTAT 58.239 33.333 18.85 0.36 0.00 1.28
4045 4465 7.254185 GCAGTTATCGACGTCCAACAAATATTA 60.254 37.037 18.85 0.00 0.00 0.98
4046 4466 6.456449 GCAGTTATCGACGTCCAACAAATATT 60.456 38.462 18.85 0.00 0.00 1.28
4047 4467 5.006358 GCAGTTATCGACGTCCAACAAATAT 59.994 40.000 18.85 1.97 0.00 1.28
4048 4468 4.327898 GCAGTTATCGACGTCCAACAAATA 59.672 41.667 18.85 4.17 0.00 1.40
4049 4469 3.124636 GCAGTTATCGACGTCCAACAAAT 59.875 43.478 18.85 3.87 0.00 2.32
4053 4473 0.997196 GGCAGTTATCGACGTCCAAC 59.003 55.000 10.58 11.56 0.00 3.77
4284 4740 0.438445 CGCGTGGTTACTGACACATG 59.562 55.000 0.00 0.00 37.45 3.21
4285 4741 0.032952 ACGCGTGGTTACTGACACAT 59.967 50.000 12.93 0.00 37.45 3.21
4308 4764 2.537560 GGACCATGGCAATCGCGAG 61.538 63.158 16.66 2.31 39.92 5.03
4387 4882 1.241165 CTGCAGTTGAGCAACCATGA 58.759 50.000 5.25 0.00 45.13 3.07
4470 4970 8.438676 AATCATGTTAATTGTAGTAGACCAGC 57.561 34.615 0.00 0.00 0.00 4.85
4618 5145 2.028203 GCCATGTGTTTTTGCAGGGTAT 60.028 45.455 0.00 0.00 38.64 2.73
4664 5195 2.415010 CATGCTCGTCTCCCCTCG 59.585 66.667 0.00 0.00 0.00 4.63
4669 5200 2.512515 GCCCACATGCTCGTCTCC 60.513 66.667 0.00 0.00 0.00 3.71
4672 5203 2.124570 ATGGCCCACATGCTCGTC 60.125 61.111 0.00 0.00 38.70 4.20
4687 5218 5.009010 GGCAACTCATAAAGATACCACCATG 59.991 44.000 0.00 0.00 0.00 3.66
4703 5234 2.969950 AGTGTTAGTAGGTGGCAACTCA 59.030 45.455 9.14 0.00 37.61 3.41
4737 5268 1.693467 TGTCTGTTTGTAGCGCTACG 58.307 50.000 35.15 23.52 38.85 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.