Multiple sequence alignment - TraesCS3D01G130000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G130000 chr3D 100.000 5058 0 0 1 5058 90259218 90254161 0.000000e+00 9341
1 TraesCS3D01G130000 chr3B 88.756 2250 141 51 2572 4745 139506178 139503965 0.000000e+00 2651
2 TraesCS3D01G130000 chr3B 84.057 1336 90 62 594 1878 139508577 139507314 0.000000e+00 1173
3 TraesCS3D01G130000 chr3B 87.601 371 22 10 210 556 139509119 139508749 4.710000e-110 409
4 TraesCS3D01G130000 chr3B 88.333 240 17 3 2112 2349 139507060 139506830 1.390000e-70 278
5 TraesCS3D01G130000 chr3A 92.275 1178 52 17 2879 4027 106557128 106555961 0.000000e+00 1635
6 TraesCS3D01G130000 chr3A 82.447 1561 109 89 837 2312 106559102 106557622 0.000000e+00 1212
7 TraesCS3D01G130000 chr3A 94.426 592 27 3 4217 4802 106554836 106554245 0.000000e+00 905
8 TraesCS3D01G130000 chr3A 88.274 614 44 17 1 590 106560133 106559524 0.000000e+00 710
9 TraesCS3D01G130000 chr3A 87.218 399 19 14 2428 2812 106557549 106557169 4.680000e-115 425
10 TraesCS3D01G130000 chr3A 93.133 233 16 0 577 809 106559501 106559269 4.850000e-90 342
11 TraesCS3D01G130000 chr5D 92.996 257 18 0 4802 5058 137969284 137969028 4.780000e-100 375
12 TraesCS3D01G130000 chr5D 88.800 250 28 0 4809 5058 488938749 488938998 1.770000e-79 307
13 TraesCS3D01G130000 chr6A 92.188 256 19 1 4804 5058 466322315 466322060 1.340000e-95 361
14 TraesCS3D01G130000 chr2B 91.051 257 23 0 4802 5058 132351887 132351631 1.040000e-91 348
15 TraesCS3D01G130000 chr2B 91.016 256 23 0 4803 5058 772680823 772681078 3.750000e-91 346
16 TraesCS3D01G130000 chr5B 89.883 257 24 2 4802 5058 270189044 270189298 3.780000e-86 329
17 TraesCS3D01G130000 chr2D 87.109 256 31 2 4804 5058 212296260 212296006 6.410000e-74 289
18 TraesCS3D01G130000 chr1D 91.398 186 14 2 3284 3468 113848561 113848745 2.340000e-63 254
19 TraesCS3D01G130000 chr1D 92.529 174 13 0 3297 3470 113571983 113572156 3.020000e-62 250
20 TraesCS3D01G130000 chr1D 90.698 172 16 0 3297 3468 113598160 113598331 3.940000e-56 230
21 TraesCS3D01G130000 chr1B 91.429 175 15 0 3296 3470 172946739 172946913 1.820000e-59 241
22 TraesCS3D01G130000 chr1B 89.785 186 17 2 3284 3468 173597764 173597948 2.350000e-58 237
23 TraesCS3D01G130000 chr1B 82.101 257 43 3 4803 5058 471808794 471808540 3.070000e-52 217
24 TraesCS3D01G130000 chr1B 95.652 115 3 2 3383 3495 857685 857571 3.110000e-42 183
25 TraesCS3D01G130000 chr1B 74.074 351 70 17 1399 1745 172944452 172944785 1.910000e-24 124
26 TraesCS3D01G130000 chr1A 84.559 136 19 2 1399 1533 120364036 120364170 3.180000e-27 134
27 TraesCS3D01G130000 chr7B 94.737 76 4 0 4940 5015 386715424 386715499 8.900000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G130000 chr3D 90254161 90259218 5057 True 9341.00 9341 100.000000 1 5058 1 chr3D.!!$R1 5057
1 TraesCS3D01G130000 chr3B 139503965 139509119 5154 True 1127.75 2651 87.186750 210 4745 4 chr3B.!!$R1 4535
2 TraesCS3D01G130000 chr3A 106554245 106560133 5888 True 871.50 1635 89.628833 1 4802 6 chr3A.!!$R1 4801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.173481 TGCAATCTCGAAGGGTCTCG 59.827 55.0 0.00 0.0 40.25 4.04 F
1075 1416 0.388134 TTTGCACGTACGCTCTCTCC 60.388 55.0 16.72 0.0 0.00 3.71 F
1910 2319 0.041312 GTCACACGACACATGCAACC 60.041 55.0 0.00 0.0 42.13 3.77 F
2730 3679 0.460284 GTCCTGACCTGGTACATGCG 60.460 60.0 0.00 0.0 38.20 4.73 F
3806 4813 0.179111 CTCGAGCCAGCCATCGTTTA 60.179 55.0 0.00 0.0 39.86 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1685 0.033503 TCACCATCCTCTCGTGCCTA 60.034 55.0 0.0 0.0 0.00 3.93 R
1923 2332 0.040157 CAAGTTGCATGTGTCACCCG 60.040 55.0 0.0 0.0 0.00 5.28 R
3212 4206 0.318699 ACGCATCATATCCGTCCACG 60.319 55.0 0.0 0.0 39.44 4.94 R
3972 4987 0.105607 ACTAGCTACCTACCCCCAGC 60.106 60.0 0.0 0.0 0.00 4.85 R
5025 6994 0.108804 CAGCACACCTTACGACGGAT 60.109 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.792087 GCGGAAACCAGACTCCAA 57.208 55.556 0.00 0.00 0.00 3.53
18 19 3.249687 GCGGAAACCAGACTCCAAT 57.750 52.632 0.00 0.00 0.00 3.16
55 56 4.723309 AGTGTTTTCCTTGCATTCTCTCT 58.277 39.130 0.00 0.00 0.00 3.10
66 67 7.281774 TCCTTGCATTCTCTCTTATCAATTCAC 59.718 37.037 0.00 0.00 0.00 3.18
85 86 5.899120 TCACAGTGTTCTAGTATCACTCC 57.101 43.478 0.00 0.00 39.89 3.85
86 87 5.571285 TCACAGTGTTCTAGTATCACTCCT 58.429 41.667 0.00 2.21 39.89 3.69
88 89 5.416013 CACAGTGTTCTAGTATCACTCCTGA 59.584 44.000 11.82 0.00 39.89 3.86
90 91 6.665680 ACAGTGTTCTAGTATCACTCCTGATT 59.334 38.462 11.82 0.00 39.89 2.57
91 92 7.834681 ACAGTGTTCTAGTATCACTCCTGATTA 59.165 37.037 11.82 0.00 39.89 1.75
92 93 8.855110 CAGTGTTCTAGTATCACTCCTGATTAT 58.145 37.037 11.82 0.00 39.89 1.28
149 150 0.173481 TGCAATCTCGAAGGGTCTCG 59.827 55.000 0.00 0.00 40.25 4.04
159 160 3.194719 GGGTCTCGTGACTACCCG 58.805 66.667 16.45 0.00 43.33 5.28
161 162 2.338015 GGTCTCGTGACTACCCGCA 61.338 63.158 16.45 0.00 42.54 5.69
203 206 9.947669 GAGAATCAAAATATGTCATTTCTCCAG 57.052 33.333 8.89 0.00 34.47 3.86
208 211 7.772292 TCAAAATATGTCATTTCTCCAGGAGAG 59.228 37.037 19.04 8.47 39.98 3.20
332 346 1.073216 CCACATCACTCGTGAGTCGC 61.073 60.000 5.91 0.00 43.61 5.19
337 351 4.086178 ACTCGTGAGTCGCGACGG 62.086 66.667 31.56 21.69 41.48 4.79
396 410 2.764637 ATTCCGGTTGCAGGTGACCC 62.765 60.000 0.00 0.00 32.14 4.46
401 415 1.451936 GTTGCAGGTGACCCTCACT 59.548 57.895 0.00 0.00 46.19 3.41
409 423 3.311110 GACCCTCACTCCGGCACA 61.311 66.667 0.00 0.00 0.00 4.57
456 470 3.529634 CGATCTAGCTCAAGTAGGTCG 57.470 52.381 1.94 1.94 42.88 4.79
461 475 3.830755 TCTAGCTCAAGTAGGTCGGTTTT 59.169 43.478 0.00 0.00 37.13 2.43
466 480 3.656559 TCAAGTAGGTCGGTTTTAGTGC 58.343 45.455 0.00 0.00 0.00 4.40
538 565 0.519961 CAAACGGTTTCGGTGGATCC 59.480 55.000 4.20 4.20 41.39 3.36
540 567 2.124860 CGGTTTCGGTGGATCCCC 60.125 66.667 9.90 9.23 0.00 4.81
541 568 2.274432 GGTTTCGGTGGATCCCCC 59.726 66.667 9.90 6.16 0.00 5.40
556 583 1.503784 TCCCCCTGTAGAGATCGGATT 59.496 52.381 0.00 0.00 0.00 3.01
557 584 2.090719 TCCCCCTGTAGAGATCGGATTT 60.091 50.000 0.00 0.00 0.00 2.17
592 753 1.135546 TGGCGTTGTTGTTGTTGTGAG 60.136 47.619 0.00 0.00 0.00 3.51
747 911 0.656259 CACCATCATCTGCTCTTGCG 59.344 55.000 0.00 0.00 43.34 4.85
760 924 2.151924 GCTCTTGCGCTTTTCGAAAAAG 59.848 45.455 22.67 19.35 41.67 2.27
770 934 5.506138 CGCTTTTCGAAAAAGATCATCTGTC 59.494 40.000 22.67 5.36 41.67 3.51
773 937 6.727824 TTTCGAAAAAGATCATCTGTCCTC 57.272 37.500 8.44 0.00 0.00 3.71
812 976 3.325870 CTCGCTGATATTTTATCCCGCA 58.674 45.455 0.00 0.00 0.00 5.69
815 979 4.021807 TCGCTGATATTTTATCCCGCAGTA 60.022 41.667 0.00 0.00 0.00 2.74
867 1170 2.206750 TCGCTCCTTTGTTGTGTGTAC 58.793 47.619 0.00 0.00 0.00 2.90
868 1171 1.937223 CGCTCCTTTGTTGTGTGTACA 59.063 47.619 0.00 0.00 34.31 2.90
869 1172 2.032894 CGCTCCTTTGTTGTGTGTACAG 60.033 50.000 0.00 0.00 38.23 2.74
903 1216 2.280186 CCGGCCGCTTATCTCACC 60.280 66.667 22.85 0.00 0.00 4.02
916 1229 1.755008 CTCACCGAGGGAGGGTCTC 60.755 68.421 0.00 0.00 34.97 3.36
948 1274 0.974525 AACCTACCTACCTGTCGGCC 60.975 60.000 0.00 0.00 0.00 6.13
951 1277 0.974010 CTACCTACCTGTCGGCCCAA 60.974 60.000 0.00 0.00 0.00 4.12
1008 1349 1.302271 CTTGCAGCTCACAGGCTCA 60.302 57.895 0.00 0.00 41.00 4.26
1014 1355 3.150949 CTCACAGGCTCACACCCA 58.849 61.111 0.00 0.00 0.00 4.51
1015 1356 1.302033 CTCACAGGCTCACACCCAC 60.302 63.158 0.00 0.00 0.00 4.61
1022 1363 4.704833 CTCACACCCACAGCCCGG 62.705 72.222 0.00 0.00 0.00 5.73
1032 1373 3.077556 CAGCCCGGAGCCACTACT 61.078 66.667 0.73 0.00 45.47 2.57
1041 1382 1.628846 GGAGCCACTACTTTCCTTCCA 59.371 52.381 0.00 0.00 0.00 3.53
1042 1383 2.615747 GGAGCCACTACTTTCCTTCCAC 60.616 54.545 0.00 0.00 0.00 4.02
1043 1384 2.038557 GAGCCACTACTTTCCTTCCACA 59.961 50.000 0.00 0.00 0.00 4.17
1044 1385 2.644798 AGCCACTACTTTCCTTCCACAT 59.355 45.455 0.00 0.00 0.00 3.21
1045 1386 3.010420 GCCACTACTTTCCTTCCACATC 58.990 50.000 0.00 0.00 0.00 3.06
1046 1387 3.610911 CCACTACTTTCCTTCCACATCC 58.389 50.000 0.00 0.00 0.00 3.51
1048 1389 3.264450 CACTACTTTCCTTCCACATCCCT 59.736 47.826 0.00 0.00 0.00 4.20
1049 1390 3.519913 ACTACTTTCCTTCCACATCCCTC 59.480 47.826 0.00 0.00 0.00 4.30
1052 1393 0.613260 TTCCTTCCACATCCCTCGTG 59.387 55.000 0.00 0.00 0.00 4.35
1053 1394 1.450312 CCTTCCACATCCCTCGTGC 60.450 63.158 0.00 0.00 32.85 5.34
1054 1395 1.450312 CTTCCACATCCCTCGTGCC 60.450 63.158 0.00 0.00 32.85 5.01
1055 1396 3.309436 TTCCACATCCCTCGTGCCG 62.309 63.158 0.00 0.00 32.85 5.69
1056 1397 4.082523 CCACATCCCTCGTGCCGT 62.083 66.667 0.00 0.00 32.85 5.68
1057 1398 2.047274 CACATCCCTCGTGCCGTT 60.047 61.111 0.00 0.00 0.00 4.44
1069 1410 3.708734 GCCGTTTGCACGTACGCT 61.709 61.111 16.72 0.00 45.62 5.07
1070 1411 2.468532 CCGTTTGCACGTACGCTC 59.531 61.111 16.72 7.83 45.62 5.03
1071 1412 2.019951 CCGTTTGCACGTACGCTCT 61.020 57.895 16.72 0.00 45.62 4.09
1072 1413 1.411089 CGTTTGCACGTACGCTCTC 59.589 57.895 16.72 2.41 41.84 3.20
1073 1414 1.002250 CGTTTGCACGTACGCTCTCT 61.002 55.000 16.72 0.00 41.84 3.10
1074 1415 0.708918 GTTTGCACGTACGCTCTCTC 59.291 55.000 16.72 0.00 0.00 3.20
1075 1416 0.388134 TTTGCACGTACGCTCTCTCC 60.388 55.000 16.72 0.00 0.00 3.71
1076 1417 2.102553 GCACGTACGCTCTCTCCC 59.897 66.667 16.72 0.00 0.00 4.30
1077 1418 2.403987 CACGTACGCTCTCTCCCG 59.596 66.667 16.72 0.00 0.00 5.14
1078 1419 2.046507 ACGTACGCTCTCTCCCGT 60.047 61.111 16.72 0.00 41.11 5.28
1079 1420 1.673665 ACGTACGCTCTCTCCCGTT 60.674 57.895 16.72 0.00 38.75 4.44
1080 1421 1.239968 ACGTACGCTCTCTCCCGTTT 61.240 55.000 16.72 0.00 38.75 3.60
1082 1423 1.626747 GTACGCTCTCTCCCGTTTTC 58.373 55.000 0.00 0.00 38.75 2.29
1091 1432 0.537653 CTCCCGTTTTCTCCTCCCTC 59.462 60.000 0.00 0.00 0.00 4.30
1093 1434 1.218316 CCGTTTTCTCCTCCCTCGG 59.782 63.158 0.00 0.00 0.00 4.63
1094 1435 1.448013 CGTTTTCTCCTCCCTCGGC 60.448 63.158 0.00 0.00 0.00 5.54
1112 1453 1.870055 GCTCCGGTGGACACGTCTTA 61.870 60.000 0.00 0.00 0.00 2.10
1222 1588 2.202623 GTGTGACGGAGCTAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
1254 1620 2.061773 CGCACAGCTACATATACAGGC 58.938 52.381 0.00 0.00 0.00 4.85
1255 1621 2.545742 CGCACAGCTACATATACAGGCA 60.546 50.000 0.00 0.00 0.00 4.75
1256 1622 3.062763 GCACAGCTACATATACAGGCAG 58.937 50.000 0.00 0.00 0.00 4.85
1257 1623 3.062763 CACAGCTACATATACAGGCAGC 58.937 50.000 0.00 0.00 0.00 5.25
1258 1624 2.968574 ACAGCTACATATACAGGCAGCT 59.031 45.455 0.00 0.00 39.86 4.24
1261 1629 2.613977 GCTACATATACAGGCAGCTGGG 60.614 54.545 17.12 0.00 0.00 4.45
1314 1682 5.205056 TCCAACAAGAAGGAAAGGCTTTTA 58.795 37.500 14.66 0.00 0.00 1.52
1316 1684 4.855715 ACAAGAAGGAAAGGCTTTTAGC 57.144 40.909 14.66 1.05 41.46 3.09
1317 1685 4.474394 ACAAGAAGGAAAGGCTTTTAGCT 58.526 39.130 14.66 6.83 41.99 3.32
1318 1686 5.631119 ACAAGAAGGAAAGGCTTTTAGCTA 58.369 37.500 14.66 0.00 41.99 3.32
1319 1687 5.707764 ACAAGAAGGAAAGGCTTTTAGCTAG 59.292 40.000 14.66 5.00 41.99 3.42
1325 1693 0.902531 AGGCTTTTAGCTAGGCACGA 59.097 50.000 10.80 0.00 41.99 4.35
1428 1796 0.109086 CGTCGCTGAACCACATCTCT 60.109 55.000 0.00 0.00 0.00 3.10
1539 1907 1.356270 CGGCGCATGGTACGTAGTA 59.644 57.895 10.83 0.00 45.11 1.82
1591 1966 5.542616 CGTAGCACTACTGTAGTACTGTT 57.457 43.478 24.39 12.65 37.23 3.16
1592 1967 5.322310 CGTAGCACTACTGTAGTACTGTTG 58.678 45.833 24.39 16.50 37.23 3.33
1593 1968 5.106791 CGTAGCACTACTGTAGTACTGTTGT 60.107 44.000 24.39 17.07 36.74 3.32
1594 1969 5.786264 AGCACTACTGTAGTACTGTTGTT 57.214 39.130 19.32 9.17 34.93 2.83
1595 1970 5.529791 AGCACTACTGTAGTACTGTTGTTG 58.470 41.667 19.32 16.15 34.93 3.33
1606 1981 6.787085 AGTACTGTTGTTGTATTTCTCAGC 57.213 37.500 0.00 0.00 0.00 4.26
1611 1986 3.500448 TGTTGTATTTCTCAGCCCACA 57.500 42.857 0.00 0.00 0.00 4.17
1612 1987 4.032960 TGTTGTATTTCTCAGCCCACAT 57.967 40.909 0.00 0.00 0.00 3.21
1613 1988 3.758023 TGTTGTATTTCTCAGCCCACATG 59.242 43.478 0.00 0.00 0.00 3.21
1617 1992 2.885135 TTTCTCAGCCCACATGTGAT 57.115 45.000 27.46 9.75 0.00 3.06
1618 1993 2.118313 TTCTCAGCCCACATGTGATG 57.882 50.000 27.46 20.39 0.00 3.07
1619 1994 1.278537 TCTCAGCCCACATGTGATGA 58.721 50.000 27.46 23.00 0.00 2.92
1620 1995 1.065926 TCTCAGCCCACATGTGATGAC 60.066 52.381 27.46 12.56 0.00 3.06
1621 1996 0.691904 TCAGCCCACATGTGATGACA 59.308 50.000 27.46 5.09 36.22 3.58
1622 1997 1.282738 TCAGCCCACATGTGATGACAT 59.717 47.619 27.46 3.94 44.08 3.06
1630 2005 1.097232 ATGTGATGACATGGTTGCCG 58.903 50.000 0.00 0.00 41.52 5.69
1632 2007 0.676466 GTGATGACATGGTTGCCGGA 60.676 55.000 5.05 0.00 0.00 5.14
1729 2110 0.839946 CGGAGATCAACCCCAAGGAT 59.160 55.000 0.00 0.00 36.73 3.24
1834 2229 2.823747 TCCTGTATGTAGCAAGTGTCGT 59.176 45.455 0.00 0.00 0.00 4.34
1835 2230 2.923655 CCTGTATGTAGCAAGTGTCGTG 59.076 50.000 0.00 0.00 0.00 4.35
1836 2231 3.366985 CCTGTATGTAGCAAGTGTCGTGA 60.367 47.826 0.00 0.00 0.00 4.35
1837 2232 3.833442 TGTATGTAGCAAGTGTCGTGAG 58.167 45.455 0.00 0.00 0.00 3.51
1838 2233 3.504520 TGTATGTAGCAAGTGTCGTGAGA 59.495 43.478 0.00 0.00 38.16 3.27
1839 2234 3.660501 ATGTAGCAAGTGTCGTGAGAA 57.339 42.857 0.00 0.00 45.01 2.87
1840 2235 2.739292 TGTAGCAAGTGTCGTGAGAAC 58.261 47.619 0.00 0.00 45.01 3.01
1878 2278 2.985957 ACAAAAACAGGCAGTTGCAT 57.014 40.000 6.43 0.00 44.36 3.96
1879 2279 2.825205 ACAAAAACAGGCAGTTGCATC 58.175 42.857 6.43 0.00 44.36 3.91
1906 2315 3.930838 TCGTCACACGACACATGC 58.069 55.556 0.00 0.00 46.73 4.06
1907 2316 1.066587 TCGTCACACGACACATGCA 59.933 52.632 0.00 0.00 46.73 3.96
1908 2317 0.528684 TCGTCACACGACACATGCAA 60.529 50.000 0.00 0.00 46.73 4.08
1909 2318 0.383002 CGTCACACGACACATGCAAC 60.383 55.000 0.00 0.00 46.05 4.17
1910 2319 0.041312 GTCACACGACACATGCAACC 60.041 55.000 0.00 0.00 42.13 3.77
2031 2488 2.353109 GGCTGGAATTTCTTCTGGTTGC 60.353 50.000 0.00 0.00 0.00 4.17
2077 2538 4.532314 ACTAAGTACAGCTAAGCCGTTT 57.468 40.909 0.00 0.00 0.00 3.60
2081 2542 0.738412 TACAGCTAAGCCGTTTCCGC 60.738 55.000 0.00 0.00 0.00 5.54
2086 2547 2.515996 CTAAGCCGTTTCCGCCTCCA 62.516 60.000 0.00 0.00 0.00 3.86
2095 2556 4.320456 CCGCCTCCATCCATCCCG 62.320 72.222 0.00 0.00 0.00 5.14
2107 2568 1.371022 CATCCCGCAGAGATCGACG 60.371 63.158 0.00 0.00 0.00 5.12
2125 2586 1.356398 ACGTCTCTCCTTCCTCCTTCT 59.644 52.381 0.00 0.00 0.00 2.85
2178 2641 2.224549 GTCGATCTGATCCACCTCGTAG 59.775 54.545 11.84 0.00 0.00 3.51
2179 2642 1.068885 CGATCTGATCCACCTCGTAGC 60.069 57.143 11.84 0.00 0.00 3.58
2212 2675 1.939934 CAAGCTGAGAAACGACAACCA 59.060 47.619 0.00 0.00 0.00 3.67
2222 2685 3.417069 AACGACAACCAAGATCCATCA 57.583 42.857 0.00 0.00 0.00 3.07
2223 2686 3.634397 ACGACAACCAAGATCCATCAT 57.366 42.857 0.00 0.00 0.00 2.45
2224 2687 3.535561 ACGACAACCAAGATCCATCATC 58.464 45.455 0.00 0.00 0.00 2.92
2225 2688 3.055167 ACGACAACCAAGATCCATCATCA 60.055 43.478 0.00 0.00 33.29 3.07
2313 2777 3.495100 GGCCAATGTCAATCGGAGTAGAT 60.495 47.826 0.00 0.00 0.00 1.98
2320 2784 8.454106 CAATGTCAATCGGAGTAGATTTTTCTT 58.546 33.333 0.00 0.00 38.66 2.52
2349 2813 3.130340 TCAGATCAATACGTGTGCTAGCA 59.870 43.478 14.93 14.93 0.00 3.49
2350 2814 4.053983 CAGATCAATACGTGTGCTAGCAT 58.946 43.478 22.51 7.30 0.00 3.79
2352 2816 1.933181 TCAATACGTGTGCTAGCATGC 59.067 47.619 22.51 10.51 0.00 4.06
2359 3047 2.131183 GTGTGCTAGCATGCTAGTAGC 58.869 52.381 40.85 34.18 45.67 3.58
2370 3058 6.535540 AGCATGCTAGTAGCTAGAGTAGTAA 58.464 40.000 21.21 0.00 42.97 2.24
2371 3059 6.999272 AGCATGCTAGTAGCTAGAGTAGTAAA 59.001 38.462 21.21 0.00 42.97 2.01
2372 3060 7.502895 AGCATGCTAGTAGCTAGAGTAGTAAAA 59.497 37.037 21.21 0.00 42.97 1.52
2373 3061 8.136165 GCATGCTAGTAGCTAGAGTAGTAAAAA 58.864 37.037 22.34 0.00 42.97 1.94
2423 3111 1.559682 AGCACTTACCATCCGTTCCAT 59.440 47.619 0.00 0.00 0.00 3.41
2430 3145 1.095228 CCATCCGTTCCATGGTTCCG 61.095 60.000 12.58 12.04 36.74 4.30
2470 3185 4.637534 CCAAACAAACAGATCTCGATCCAT 59.362 41.667 0.00 0.00 38.58 3.41
2491 3206 2.991250 GGATGCTTCCAGCTCAACTAA 58.009 47.619 13.60 0.00 42.97 2.24
2494 3209 3.207265 TGCTTCCAGCTCAACTAAACA 57.793 42.857 0.00 0.00 42.97 2.83
2495 3210 3.550820 TGCTTCCAGCTCAACTAAACAA 58.449 40.909 0.00 0.00 42.97 2.83
2512 3227 6.761714 ACTAAACAAAACAAACACAACACCAA 59.238 30.769 0.00 0.00 0.00 3.67
2524 3239 6.761099 ACACAACACCAAAACATAGTTACA 57.239 33.333 0.00 0.00 0.00 2.41
2539 3262 8.357290 ACATAGTTACAACATAGTGGAGTACA 57.643 34.615 0.00 0.00 0.00 2.90
2543 3266 8.591114 AGTTACAACATAGTGGAGTACATAGT 57.409 34.615 0.00 0.00 0.00 2.12
2544 3267 9.690913 AGTTACAACATAGTGGAGTACATAGTA 57.309 33.333 0.00 0.00 0.00 1.82
2632 3560 4.541482 GCGCCATCACCATGCACG 62.541 66.667 0.00 0.00 33.45 5.34
2633 3561 4.541482 CGCCATCACCATGCACGC 62.541 66.667 0.00 0.00 0.00 5.34
2634 3562 3.442167 GCCATCACCATGCACGCA 61.442 61.111 0.00 0.00 0.00 5.24
2635 3563 2.486504 CCATCACCATGCACGCAC 59.513 61.111 0.00 0.00 0.00 5.34
2636 3564 2.098871 CATCACCATGCACGCACG 59.901 61.111 0.00 0.00 0.00 5.34
2637 3565 3.803082 ATCACCATGCACGCACGC 61.803 61.111 0.00 0.00 0.00 5.34
2687 3632 7.821359 CCCTTGATCTCACGATAACAATCATAT 59.179 37.037 0.00 0.00 0.00 1.78
2688 3633 9.860898 CCTTGATCTCACGATAACAATCATATA 57.139 33.333 0.00 0.00 0.00 0.86
2730 3679 0.460284 GTCCTGACCTGGTACATGCG 60.460 60.000 0.00 0.00 38.20 4.73
3073 4036 3.121279 GGTCACATGCGCGTATTATGTAG 59.879 47.826 7.06 8.42 33.57 2.74
3074 4037 3.734231 GTCACATGCGCGTATTATGTAGT 59.266 43.478 7.06 0.00 33.57 2.73
3170 4162 1.667724 GTGATGGTTTGCGAGAGGATG 59.332 52.381 0.00 0.00 0.00 3.51
3193 4185 6.287589 GGATAGATCCAACAACGAGGATAT 57.712 41.667 3.54 0.00 44.44 1.63
3256 4257 4.680237 CTGGGAGTGCGCGGTTCA 62.680 66.667 8.83 0.00 0.00 3.18
3271 4272 1.374125 TTCATGGGCTGACGTGTCG 60.374 57.895 0.00 0.00 32.17 4.35
3576 4583 2.103042 GCTCAGCACCATCGTCACC 61.103 63.158 0.00 0.00 0.00 4.02
3696 4703 2.825387 GCCAGCGCCATGATGACA 60.825 61.111 2.29 0.00 35.47 3.58
3740 4747 3.879295 CAGGTGTAATCATTCATTCGCCT 59.121 43.478 0.00 0.00 34.99 5.52
3803 4810 4.521062 GCTCGAGCCAGCCATCGT 62.521 66.667 27.22 0.00 39.86 3.73
3806 4813 0.179111 CTCGAGCCAGCCATCGTTTA 60.179 55.000 0.00 0.00 39.86 2.01
3869 4880 1.607148 CGGCCGGTTTTCTTTTCTTCT 59.393 47.619 20.10 0.00 0.00 2.85
3872 4883 3.297472 GCCGGTTTTCTTTTCTTCTTCG 58.703 45.455 1.90 0.00 0.00 3.79
3946 4961 1.472276 CCATCGCTTACGCTGACGAC 61.472 60.000 0.00 0.00 43.93 4.34
3947 4962 1.226603 ATCGCTTACGCTGACGACC 60.227 57.895 0.00 0.00 43.93 4.79
3948 4963 2.914797 ATCGCTTACGCTGACGACCG 62.915 60.000 0.00 0.00 43.93 4.79
3949 4964 2.177531 GCTTACGCTGACGACCGA 59.822 61.111 0.00 0.00 43.93 4.69
3972 4987 3.557475 GGATCCATTGATCTCTCAGCCAG 60.557 52.174 6.95 0.00 45.62 4.85
3973 4988 1.140452 TCCATTGATCTCTCAGCCAGC 59.860 52.381 0.00 0.00 31.68 4.85
3974 4989 1.141254 CCATTGATCTCTCAGCCAGCT 59.859 52.381 0.00 0.00 31.68 4.24
3975 4990 2.214347 CATTGATCTCTCAGCCAGCTG 58.786 52.381 13.54 13.54 44.86 4.24
3976 4991 0.540454 TTGATCTCTCAGCCAGCTGG 59.460 55.000 29.34 29.34 43.75 4.85
3977 4992 1.335882 TGATCTCTCAGCCAGCTGGG 61.336 60.000 33.46 18.37 45.48 4.45
4040 5066 8.108172 GTGTATGTTGCACATATATATGTACGC 58.892 37.037 24.50 23.29 44.57 4.42
4042 5068 6.704512 TGTTGCACATATATATGTACGCTG 57.295 37.500 26.21 17.22 44.57 5.18
4043 5069 6.220201 TGTTGCACATATATATGTACGCTGT 58.780 36.000 26.21 7.96 44.57 4.40
4044 5070 6.145371 TGTTGCACATATATATGTACGCTGTG 59.855 38.462 26.21 17.37 44.57 3.66
4047 5073 6.751888 TGCACATATATATGTACGCTGTGATC 59.248 38.462 26.21 9.05 44.57 2.92
4056 5082 4.672409 TGTACGCTGTGATCTATTCTGTG 58.328 43.478 0.00 0.00 0.00 3.66
4057 5083 3.876274 ACGCTGTGATCTATTCTGTGT 57.124 42.857 0.00 0.00 0.00 3.72
4065 5103 8.281194 GCTGTGATCTATTCTGTGTATTCAATG 58.719 37.037 0.00 0.00 0.00 2.82
4085 5123 8.021955 TCAATGTAATGATCATTCAGTATCGC 57.978 34.615 23.95 6.70 35.14 4.58
4086 5124 6.974932 ATGTAATGATCATTCAGTATCGCC 57.025 37.500 23.95 3.81 35.14 5.54
4087 5125 5.237815 TGTAATGATCATTCAGTATCGCCC 58.762 41.667 23.95 2.46 35.14 6.13
4150 5526 0.452987 AAATATGCTGCTGTGCACCG 59.547 50.000 15.69 9.51 46.33 4.94
4160 5536 2.231721 TGCTGTGCACCGTGTATACTTA 59.768 45.455 15.69 0.00 31.71 2.24
4161 5537 3.255725 GCTGTGCACCGTGTATACTTAA 58.744 45.455 15.69 0.00 0.00 1.85
4162 5538 3.680937 GCTGTGCACCGTGTATACTTAAA 59.319 43.478 15.69 0.00 0.00 1.52
4163 5539 4.201685 GCTGTGCACCGTGTATACTTAAAG 60.202 45.833 15.69 0.25 0.00 1.85
4194 5571 7.290857 ACGACATGTGAACTATATGAACAAC 57.709 36.000 1.15 0.00 32.71 3.32
4196 5573 7.063426 ACGACATGTGAACTATATGAACAACAG 59.937 37.037 1.15 0.00 32.71 3.16
4200 5577 9.586435 CATGTGAACTATATGAACAACAGAGTA 57.414 33.333 0.00 0.00 30.08 2.59
4329 6293 6.485171 AGCTCTTAATTAGGTTCCATGTTGT 58.515 36.000 0.00 0.00 0.00 3.32
4553 6521 1.066430 TCGCCAACTGGGATGTAAGAC 60.066 52.381 0.00 0.00 40.01 3.01
4590 6558 2.482721 CAGTCAACCCTACGCGAAATTT 59.517 45.455 15.93 0.00 0.00 1.82
4730 6699 4.762289 ATACACAGGAATCCAAGGAGAC 57.238 45.455 0.61 0.00 0.00 3.36
4748 6717 5.241949 AGGAGACTGTACAGAAACTACACAG 59.758 44.000 29.30 0.61 41.13 3.66
4792 6761 2.092429 GGGTCTTGGGTGCATAGATGAA 60.092 50.000 0.00 0.00 0.00 2.57
4802 6771 8.537728 TGGGTGCATAGATGAAATAATTTCTT 57.462 30.769 0.00 0.00 40.32 2.52
4803 6772 8.980596 TGGGTGCATAGATGAAATAATTTCTTT 58.019 29.630 0.00 0.00 40.32 2.52
4804 6773 9.822185 GGGTGCATAGATGAAATAATTTCTTTT 57.178 29.630 0.00 0.00 40.32 2.27
4829 6798 1.709203 CTCGAATACGCACGAGTATGC 59.291 52.381 0.00 0.00 46.90 3.14
4843 6812 8.610855 GCACGAGTATGCGTATCTTATATTAA 57.389 34.615 0.00 0.00 43.59 1.40
4844 6813 9.069078 GCACGAGTATGCGTATCTTATATTAAA 57.931 33.333 0.00 0.00 43.59 1.52
4862 6831 8.824756 ATATTAAAAGAAGGAAAGGGGAAGAC 57.175 34.615 0.00 0.00 0.00 3.01
4863 6832 4.536295 AAAAGAAGGAAAGGGGAAGACA 57.464 40.909 0.00 0.00 0.00 3.41
4864 6833 3.510531 AAGAAGGAAAGGGGAAGACAC 57.489 47.619 0.00 0.00 0.00 3.67
4865 6834 1.705745 AGAAGGAAAGGGGAAGACACC 59.294 52.381 0.00 0.00 40.50 4.16
4872 6841 3.835134 GGGAAGACACCCCATCCA 58.165 61.111 0.00 0.00 43.81 3.41
4873 6842 1.303282 GGGAAGACACCCCATCCAC 59.697 63.158 0.00 0.00 43.81 4.02
4874 6843 1.078426 GGAAGACACCCCATCCACG 60.078 63.158 0.00 0.00 32.08 4.94
4875 6844 1.078426 GAAGACACCCCATCCACGG 60.078 63.158 0.00 0.00 0.00 4.94
4876 6845 1.838073 GAAGACACCCCATCCACGGT 61.838 60.000 0.00 0.00 0.00 4.83
4877 6846 1.423794 AAGACACCCCATCCACGGTT 61.424 55.000 0.00 0.00 0.00 4.44
4878 6847 0.545787 AGACACCCCATCCACGGTTA 60.546 55.000 0.00 0.00 0.00 2.85
4879 6848 0.544697 GACACCCCATCCACGGTTAT 59.455 55.000 0.00 0.00 0.00 1.89
4880 6849 0.996583 ACACCCCATCCACGGTTATT 59.003 50.000 0.00 0.00 0.00 1.40
4881 6850 1.356398 ACACCCCATCCACGGTTATTT 59.644 47.619 0.00 0.00 0.00 1.40
4882 6851 2.577105 ACACCCCATCCACGGTTATTTA 59.423 45.455 0.00 0.00 0.00 1.40
4883 6852 2.946990 CACCCCATCCACGGTTATTTAC 59.053 50.000 0.00 0.00 0.00 2.01
4884 6853 2.577105 ACCCCATCCACGGTTATTTACA 59.423 45.455 0.00 0.00 0.00 2.41
4885 6854 3.010361 ACCCCATCCACGGTTATTTACAA 59.990 43.478 0.00 0.00 0.00 2.41
4886 6855 3.379057 CCCCATCCACGGTTATTTACAAC 59.621 47.826 0.00 0.00 0.00 3.32
4887 6856 4.011023 CCCATCCACGGTTATTTACAACA 58.989 43.478 0.00 0.00 0.00 3.33
4888 6857 4.142556 CCCATCCACGGTTATTTACAACAC 60.143 45.833 0.00 0.00 0.00 3.32
4889 6858 4.436317 CCATCCACGGTTATTTACAACACG 60.436 45.833 0.00 0.00 0.00 4.49
4890 6859 3.726607 TCCACGGTTATTTACAACACGT 58.273 40.909 0.00 0.00 36.45 4.49
4891 6860 3.740321 TCCACGGTTATTTACAACACGTC 59.260 43.478 0.00 0.00 34.97 4.34
4892 6861 3.742369 CCACGGTTATTTACAACACGTCT 59.258 43.478 0.00 0.00 34.97 4.18
4893 6862 4.211794 CCACGGTTATTTACAACACGTCTT 59.788 41.667 0.00 0.00 34.97 3.01
4894 6863 5.404968 CCACGGTTATTTACAACACGTCTTA 59.595 40.000 0.00 0.00 34.97 2.10
4895 6864 6.291385 CACGGTTATTTACAACACGTCTTAC 58.709 40.000 0.00 0.00 34.97 2.34
4896 6865 5.982516 ACGGTTATTTACAACACGTCTTACA 59.017 36.000 0.00 0.00 33.19 2.41
4897 6866 6.478344 ACGGTTATTTACAACACGTCTTACAA 59.522 34.615 0.00 0.00 33.19 2.41
4898 6867 6.787043 CGGTTATTTACAACACGTCTTACAAC 59.213 38.462 0.00 0.00 0.00 3.32
4900 6869 3.839823 TTACAACACGTCTTACAACGC 57.160 42.857 0.00 0.00 46.40 4.84
4901 6870 1.642728 ACAACACGTCTTACAACGCA 58.357 45.000 0.00 0.00 46.40 5.24
4902 6871 2.206750 ACAACACGTCTTACAACGCAT 58.793 42.857 0.00 0.00 46.40 4.73
4903 6872 2.610374 ACAACACGTCTTACAACGCATT 59.390 40.909 0.00 0.00 46.40 3.56
4904 6873 3.215244 CAACACGTCTTACAACGCATTC 58.785 45.455 0.00 0.00 46.40 2.67
4905 6874 1.796459 ACACGTCTTACAACGCATTCC 59.204 47.619 0.00 0.00 46.40 3.01
4906 6875 1.795872 CACGTCTTACAACGCATTCCA 59.204 47.619 0.00 0.00 46.40 3.53
4907 6876 1.796459 ACGTCTTACAACGCATTCCAC 59.204 47.619 0.00 0.00 46.40 4.02
4908 6877 1.127951 CGTCTTACAACGCATTCCACC 59.872 52.381 0.00 0.00 35.64 4.61
4909 6878 1.467342 GTCTTACAACGCATTCCACCC 59.533 52.381 0.00 0.00 0.00 4.61
4910 6879 0.808755 CTTACAACGCATTCCACCCC 59.191 55.000 0.00 0.00 0.00 4.95
4911 6880 0.609681 TTACAACGCATTCCACCCCC 60.610 55.000 0.00 0.00 0.00 5.40
4912 6881 1.780107 TACAACGCATTCCACCCCCA 61.780 55.000 0.00 0.00 0.00 4.96
4913 6882 1.905843 CAACGCATTCCACCCCCAA 60.906 57.895 0.00 0.00 0.00 4.12
4914 6883 1.906333 AACGCATTCCACCCCCAAC 60.906 57.895 0.00 0.00 0.00 3.77
4915 6884 2.035626 CGCATTCCACCCCCAACT 59.964 61.111 0.00 0.00 0.00 3.16
4916 6885 2.046285 CGCATTCCACCCCCAACTC 61.046 63.158 0.00 0.00 0.00 3.01
4917 6886 1.076549 GCATTCCACCCCCAACTCA 59.923 57.895 0.00 0.00 0.00 3.41
4918 6887 0.324645 GCATTCCACCCCCAACTCAT 60.325 55.000 0.00 0.00 0.00 2.90
4919 6888 1.767759 CATTCCACCCCCAACTCATC 58.232 55.000 0.00 0.00 0.00 2.92
4920 6889 0.631212 ATTCCACCCCCAACTCATCC 59.369 55.000 0.00 0.00 0.00 3.51
4921 6890 0.477597 TTCCACCCCCAACTCATCCT 60.478 55.000 0.00 0.00 0.00 3.24
4922 6891 0.419865 TCCACCCCCAACTCATCCTA 59.580 55.000 0.00 0.00 0.00 2.94
4923 6892 0.839946 CCACCCCCAACTCATCCTAG 59.160 60.000 0.00 0.00 0.00 3.02
4924 6893 0.181350 CACCCCCAACTCATCCTAGC 59.819 60.000 0.00 0.00 0.00 3.42
4925 6894 1.338136 ACCCCCAACTCATCCTAGCG 61.338 60.000 0.00 0.00 0.00 4.26
4926 6895 1.447643 CCCCAACTCATCCTAGCGG 59.552 63.158 0.00 0.00 0.00 5.52
4927 6896 1.048724 CCCCAACTCATCCTAGCGGA 61.049 60.000 0.00 0.00 45.16 5.54
4940 6909 2.354773 GCGGATTACTCGCCCTCG 60.355 66.667 0.00 0.00 46.55 4.63
4941 6910 2.354773 CGGATTACTCGCCCTCGC 60.355 66.667 0.00 0.00 35.26 5.03
4942 6911 2.846652 CGGATTACTCGCCCTCGCT 61.847 63.158 0.00 0.00 35.26 4.93
4943 6912 1.007154 GGATTACTCGCCCTCGCTC 60.007 63.158 0.00 0.00 35.26 5.03
4944 6913 1.007154 GATTACTCGCCCTCGCTCC 60.007 63.158 0.00 0.00 35.26 4.70
4945 6914 1.735376 GATTACTCGCCCTCGCTCCA 61.735 60.000 0.00 0.00 35.26 3.86
4946 6915 2.017559 ATTACTCGCCCTCGCTCCAC 62.018 60.000 0.00 0.00 35.26 4.02
4947 6916 3.640257 TACTCGCCCTCGCTCCACT 62.640 63.158 0.00 0.00 35.26 4.00
4948 6917 4.200283 CTCGCCCTCGCTCCACTC 62.200 72.222 0.00 0.00 35.26 3.51
4950 6919 3.842923 CGCCCTCGCTCCACTCAT 61.843 66.667 0.00 0.00 0.00 2.90
4951 6920 2.107953 GCCCTCGCTCCACTCATC 59.892 66.667 0.00 0.00 0.00 2.92
4952 6921 2.430610 GCCCTCGCTCCACTCATCT 61.431 63.158 0.00 0.00 0.00 2.90
4953 6922 1.109920 GCCCTCGCTCCACTCATCTA 61.110 60.000 0.00 0.00 0.00 1.98
4954 6923 0.671251 CCCTCGCTCCACTCATCTAC 59.329 60.000 0.00 0.00 0.00 2.59
4955 6924 1.686355 CCTCGCTCCACTCATCTACT 58.314 55.000 0.00 0.00 0.00 2.57
4956 6925 1.606668 CCTCGCTCCACTCATCTACTC 59.393 57.143 0.00 0.00 0.00 2.59
4957 6926 1.606668 CTCGCTCCACTCATCTACTCC 59.393 57.143 0.00 0.00 0.00 3.85
4958 6927 1.213182 TCGCTCCACTCATCTACTCCT 59.787 52.381 0.00 0.00 0.00 3.69
4959 6928 2.438392 TCGCTCCACTCATCTACTCCTA 59.562 50.000 0.00 0.00 0.00 2.94
4960 6929 3.073209 TCGCTCCACTCATCTACTCCTAT 59.927 47.826 0.00 0.00 0.00 2.57
4961 6930 4.286291 TCGCTCCACTCATCTACTCCTATA 59.714 45.833 0.00 0.00 0.00 1.31
4962 6931 5.004448 CGCTCCACTCATCTACTCCTATAA 58.996 45.833 0.00 0.00 0.00 0.98
4963 6932 5.473846 CGCTCCACTCATCTACTCCTATAAA 59.526 44.000 0.00 0.00 0.00 1.40
4964 6933 6.348950 CGCTCCACTCATCTACTCCTATAAAG 60.349 46.154 0.00 0.00 0.00 1.85
4965 6934 6.492087 GCTCCACTCATCTACTCCTATAAAGT 59.508 42.308 0.00 0.00 0.00 2.66
4966 6935 7.014808 GCTCCACTCATCTACTCCTATAAAGTT 59.985 40.741 0.00 0.00 0.00 2.66
4967 6936 8.239038 TCCACTCATCTACTCCTATAAAGTTG 57.761 38.462 0.00 0.00 0.00 3.16
4968 6937 8.059461 TCCACTCATCTACTCCTATAAAGTTGA 58.941 37.037 2.93 2.93 34.00 3.18
4969 6938 8.696374 CCACTCATCTACTCCTATAAAGTTGAA 58.304 37.037 4.13 0.00 33.38 2.69
4972 6941 9.239002 CTCATCTACTCCTATAAAGTTGAAACG 57.761 37.037 4.13 0.00 33.38 3.60
4973 6942 8.963725 TCATCTACTCCTATAAAGTTGAAACGA 58.036 33.333 0.00 0.98 33.38 3.85
4974 6943 9.582431 CATCTACTCCTATAAAGTTGAAACGAA 57.418 33.333 0.00 0.00 33.38 3.85
4976 6945 9.582431 TCTACTCCTATAAAGTTGAAACGAATG 57.418 33.333 0.00 0.00 0.00 2.67
4977 6946 9.367444 CTACTCCTATAAAGTTGAAACGAATGT 57.633 33.333 0.00 0.00 0.00 2.71
4978 6947 8.252964 ACTCCTATAAAGTTGAAACGAATGTC 57.747 34.615 0.00 0.00 0.00 3.06
4979 6948 8.095169 ACTCCTATAAAGTTGAAACGAATGTCT 58.905 33.333 0.00 0.00 0.00 3.41
4980 6949 8.842358 TCCTATAAAGTTGAAACGAATGTCTT 57.158 30.769 0.00 0.00 0.00 3.01
4981 6950 9.280174 TCCTATAAAGTTGAAACGAATGTCTTT 57.720 29.630 0.00 0.00 0.00 2.52
4982 6951 9.329913 CCTATAAAGTTGAAACGAATGTCTTTG 57.670 33.333 0.00 0.00 0.00 2.77
4983 6952 9.878599 CTATAAAGTTGAAACGAATGTCTTTGT 57.121 29.630 0.00 0.00 0.00 2.83
4984 6953 6.869421 AAAGTTGAAACGAATGTCTTTGTG 57.131 33.333 0.00 0.00 0.00 3.33
4985 6954 5.560966 AGTTGAAACGAATGTCTTTGTGT 57.439 34.783 0.00 0.00 0.00 3.72
4986 6955 6.671614 AGTTGAAACGAATGTCTTTGTGTA 57.328 33.333 0.00 0.00 0.00 2.90
4987 6956 6.715464 AGTTGAAACGAATGTCTTTGTGTAG 58.285 36.000 0.00 0.00 0.00 2.74
4988 6957 6.537301 AGTTGAAACGAATGTCTTTGTGTAGA 59.463 34.615 0.00 0.00 0.00 2.59
4989 6958 6.912203 TGAAACGAATGTCTTTGTGTAGAA 57.088 33.333 0.00 0.00 0.00 2.10
4990 6959 6.711579 TGAAACGAATGTCTTTGTGTAGAAC 58.288 36.000 0.00 0.00 0.00 3.01
4991 6960 6.314152 TGAAACGAATGTCTTTGTGTAGAACA 59.686 34.615 0.00 0.00 36.85 3.18
5000 6969 3.300711 GTGTAGAACACCCGCTTGT 57.699 52.632 0.00 0.00 43.05 3.16
5001 6970 1.145803 GTGTAGAACACCCGCTTGTC 58.854 55.000 0.00 0.00 43.05 3.18
5002 6971 1.045407 TGTAGAACACCCGCTTGTCT 58.955 50.000 0.00 0.00 0.00 3.41
5003 6972 1.000506 TGTAGAACACCCGCTTGTCTC 59.999 52.381 0.00 0.00 0.00 3.36
5004 6973 0.606604 TAGAACACCCGCTTGTCTCC 59.393 55.000 0.00 0.00 0.00 3.71
5005 6974 1.070786 GAACACCCGCTTGTCTCCA 59.929 57.895 0.00 0.00 0.00 3.86
5006 6975 0.321653 GAACACCCGCTTGTCTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
5007 6976 0.606401 AACACCCGCTTGTCTCCATG 60.606 55.000 0.00 0.00 0.00 3.66
5008 6977 1.003355 CACCCGCTTGTCTCCATGT 60.003 57.895 0.00 0.00 0.00 3.21
5009 6978 1.021390 CACCCGCTTGTCTCCATGTC 61.021 60.000 0.00 0.00 0.00 3.06
5010 6979 1.450312 CCCGCTTGTCTCCATGTCC 60.450 63.158 0.00 0.00 0.00 4.02
5011 6980 1.450312 CCGCTTGTCTCCATGTCCC 60.450 63.158 0.00 0.00 0.00 4.46
5012 6981 1.296392 CGCTTGTCTCCATGTCCCA 59.704 57.895 0.00 0.00 0.00 4.37
5013 6982 1.021390 CGCTTGTCTCCATGTCCCAC 61.021 60.000 0.00 0.00 0.00 4.61
5014 6983 0.036732 GCTTGTCTCCATGTCCCACA 59.963 55.000 0.00 0.00 0.00 4.17
5015 6984 1.813513 CTTGTCTCCATGTCCCACAC 58.186 55.000 0.00 0.00 0.00 3.82
5016 6985 1.349026 CTTGTCTCCATGTCCCACACT 59.651 52.381 0.00 0.00 0.00 3.55
5017 6986 0.976641 TGTCTCCATGTCCCACACTC 59.023 55.000 0.00 0.00 0.00 3.51
5018 6987 1.270907 GTCTCCATGTCCCACACTCT 58.729 55.000 0.00 0.00 0.00 3.24
5019 6988 1.066573 GTCTCCATGTCCCACACTCTG 60.067 57.143 0.00 0.00 0.00 3.35
5020 6989 1.203174 TCTCCATGTCCCACACTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
5021 6990 1.206610 CTCCATGTCCCACACTCTGAG 59.793 57.143 2.45 2.45 0.00 3.35
5022 6991 0.251354 CCATGTCCCACACTCTGAGG 59.749 60.000 9.85 0.76 0.00 3.86
5023 6992 0.392193 CATGTCCCACACTCTGAGGC 60.392 60.000 9.85 0.00 0.00 4.70
5024 6993 1.892819 ATGTCCCACACTCTGAGGCG 61.893 60.000 9.85 2.25 0.00 5.52
5025 6994 2.117423 TCCCACACTCTGAGGCGA 59.883 61.111 9.85 0.00 0.00 5.54
5026 6995 1.305297 TCCCACACTCTGAGGCGAT 60.305 57.895 9.85 0.00 0.00 4.58
5027 6996 1.142748 CCCACACTCTGAGGCGATC 59.857 63.158 9.85 0.00 0.00 3.69
5028 6997 1.142748 CCACACTCTGAGGCGATCC 59.857 63.158 9.85 0.00 0.00 3.36
5029 6998 1.226802 CACACTCTGAGGCGATCCG 60.227 63.158 9.85 0.00 37.47 4.18
5030 6999 1.679305 ACACTCTGAGGCGATCCGT 60.679 57.895 9.85 0.00 37.47 4.69
5031 7000 1.064946 CACTCTGAGGCGATCCGTC 59.935 63.158 9.85 0.00 37.47 4.79
5041 7010 2.939782 CGATCCGTCGTAAGGTGTG 58.060 57.895 0.00 0.00 42.78 3.82
5042 7011 1.138047 CGATCCGTCGTAAGGTGTGC 61.138 60.000 0.00 0.00 42.78 4.57
5043 7012 0.172803 GATCCGTCGTAAGGTGTGCT 59.827 55.000 0.00 0.00 38.47 4.40
5044 7013 0.108804 ATCCGTCGTAAGGTGTGCTG 60.109 55.000 0.00 0.00 38.47 4.41
5045 7014 2.380410 CCGTCGTAAGGTGTGCTGC 61.380 63.158 0.00 0.00 38.47 5.25
5046 7015 1.663388 CGTCGTAAGGTGTGCTGCA 60.663 57.895 0.00 0.00 38.47 4.41
5047 7016 1.860078 GTCGTAAGGTGTGCTGCAC 59.140 57.895 25.15 25.15 46.97 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.383102 TGATAAGAGAGAATGCAAGGAAAAC 57.617 36.000 0.00 0.00 0.00 2.43
66 67 6.707440 ATCAGGAGTGATACTAGAACACTG 57.293 41.667 19.33 12.87 41.96 3.66
125 126 5.564848 CGAGACCCTTCGAGATTGCATATTA 60.565 44.000 0.00 0.00 43.03 0.98
208 211 8.850007 ACCCTACTTGAGAAATTCTAGTTTTC 57.150 34.615 4.02 10.87 41.25 2.29
252 266 1.970640 GCCAAGTGATCCCCAAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
332 346 1.344837 CGACAATCATGTGCCGTCG 59.655 57.895 12.58 12.58 40.74 5.12
337 351 1.466360 GCCTCAACGACAATCATGTGC 60.466 52.381 0.00 0.00 40.74 4.57
396 410 2.163818 TAAGTTTGTGCCGGAGTGAG 57.836 50.000 5.05 0.00 0.00 3.51
401 415 0.885196 GCCAATAAGTTTGTGCCGGA 59.115 50.000 5.05 0.00 0.00 5.14
456 470 1.191647 CACGACGACTGCACTAAAACC 59.808 52.381 0.00 0.00 0.00 3.27
461 475 0.664224 TTGACACGACGACTGCACTA 59.336 50.000 0.00 0.00 0.00 2.74
466 480 2.542178 TGGAAAATTGACACGACGACTG 59.458 45.455 0.00 0.00 0.00 3.51
538 565 4.423625 AAAAATCCGATCTCTACAGGGG 57.576 45.455 0.00 0.00 0.00 4.79
563 590 1.546476 ACAACAACGCCACCTCAAAAA 59.454 42.857 0.00 0.00 0.00 1.94
566 593 0.453793 CAACAACAACGCCACCTCAA 59.546 50.000 0.00 0.00 0.00 3.02
570 597 0.109039 ACAACAACAACAACGCCACC 60.109 50.000 0.00 0.00 0.00 4.61
571 598 0.988439 CACAACAACAACAACGCCAC 59.012 50.000 0.00 0.00 0.00 5.01
573 600 1.135517 ACTCACAACAACAACAACGCC 60.136 47.619 0.00 0.00 0.00 5.68
574 601 2.256445 ACTCACAACAACAACAACGC 57.744 45.000 0.00 0.00 0.00 4.84
575 602 4.728131 CACATACTCACAACAACAACAACG 59.272 41.667 0.00 0.00 0.00 4.10
592 753 2.747446 CACCTGGCTACCAAACACATAC 59.253 50.000 0.00 0.00 30.80 2.39
666 827 0.803117 GTGCTCCCCGTTTTTAGCTC 59.197 55.000 0.00 0.00 35.95 4.09
707 868 6.653320 TGGTGTACTATGATTTTGTTGTCTCC 59.347 38.462 0.00 0.00 0.00 3.71
708 869 7.667043 TGGTGTACTATGATTTTGTTGTCTC 57.333 36.000 0.00 0.00 0.00 3.36
747 911 5.797434 GGACAGATGATCTTTTTCGAAAAGC 59.203 40.000 21.53 13.52 0.00 3.51
760 924 0.039617 CGAGGCGAGGACAGATGATC 60.040 60.000 0.00 0.00 0.00 2.92
770 934 2.027314 CATGAGAGCGAGGCGAGG 59.973 66.667 0.00 0.00 0.00 4.63
773 937 2.027314 CTCCATGAGAGCGAGGCG 59.973 66.667 0.00 0.00 35.31 5.52
823 1122 7.363530 CGAGATCCATATACTCCGGGATAAAAA 60.364 40.741 0.00 0.00 40.15 1.94
834 1133 5.047660 ACAAAGGAGCGAGATCCATATACTC 60.048 44.000 10.21 0.00 42.26 2.59
835 1134 4.835615 ACAAAGGAGCGAGATCCATATACT 59.164 41.667 10.21 0.00 42.26 2.12
916 1229 3.074412 AGGTAGGTTGATGAAAAGTGCG 58.926 45.455 0.00 0.00 0.00 5.34
1014 1355 3.391382 GTAGTGGCTCCGGGCTGT 61.391 66.667 13.58 3.13 41.46 4.40
1015 1356 2.185310 AAAGTAGTGGCTCCGGGCTG 62.185 60.000 13.58 0.77 41.46 4.85
1020 1361 1.405661 GGAAGGAAAGTAGTGGCTCCG 60.406 57.143 0.00 0.00 32.91 4.63
1021 1362 1.628846 TGGAAGGAAAGTAGTGGCTCC 59.371 52.381 0.00 0.00 0.00 4.70
1022 1363 2.038557 TGTGGAAGGAAAGTAGTGGCTC 59.961 50.000 0.00 0.00 0.00 4.70
1032 1373 1.003118 CACGAGGGATGTGGAAGGAAA 59.997 52.381 0.00 0.00 33.69 3.13
1052 1393 3.624831 GAGCGTACGTGCAAACGGC 62.625 63.158 17.90 1.83 45.13 5.68
1053 1394 1.941476 GAGAGCGTACGTGCAAACGG 61.941 60.000 17.90 0.00 39.46 4.44
1054 1395 1.002250 AGAGAGCGTACGTGCAAACG 61.002 55.000 17.90 11.86 41.92 3.60
1055 1396 0.708918 GAGAGAGCGTACGTGCAAAC 59.291 55.000 17.90 0.00 37.31 2.93
1056 1397 0.388134 GGAGAGAGCGTACGTGCAAA 60.388 55.000 17.90 0.00 37.31 3.68
1057 1398 1.211969 GGAGAGAGCGTACGTGCAA 59.788 57.895 17.90 0.00 37.31 4.08
1061 1402 1.239968 AAACGGGAGAGAGCGTACGT 61.240 55.000 17.90 3.43 35.95 3.57
1062 1403 0.109412 AAAACGGGAGAGAGCGTACG 60.109 55.000 11.84 11.84 0.00 3.67
1063 1404 1.201880 AGAAAACGGGAGAGAGCGTAC 59.798 52.381 0.00 0.00 0.00 3.67
1064 1405 1.471684 GAGAAAACGGGAGAGAGCGTA 59.528 52.381 0.00 0.00 0.00 4.42
1067 1408 0.899019 AGGAGAAAACGGGAGAGAGC 59.101 55.000 0.00 0.00 0.00 4.09
1068 1409 1.478916 GGAGGAGAAAACGGGAGAGAG 59.521 57.143 0.00 0.00 0.00 3.20
1069 1410 1.558233 GGAGGAGAAAACGGGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10
1070 1411 0.537653 GGGAGGAGAAAACGGGAGAG 59.462 60.000 0.00 0.00 0.00 3.20
1071 1412 0.116541 AGGGAGGAGAAAACGGGAGA 59.883 55.000 0.00 0.00 0.00 3.71
1072 1413 0.537653 GAGGGAGGAGAAAACGGGAG 59.462 60.000 0.00 0.00 0.00 4.30
1073 1414 1.255667 CGAGGGAGGAGAAAACGGGA 61.256 60.000 0.00 0.00 0.00 5.14
1074 1415 1.218316 CGAGGGAGGAGAAAACGGG 59.782 63.158 0.00 0.00 0.00 5.28
1075 1416 1.218316 CCGAGGGAGGAGAAAACGG 59.782 63.158 0.00 0.00 0.00 4.44
1076 1417 1.448013 GCCGAGGGAGGAGAAAACG 60.448 63.158 0.00 0.00 0.00 3.60
1077 1418 0.108089 GAGCCGAGGGAGGAGAAAAC 60.108 60.000 0.00 0.00 0.00 2.43
1078 1419 1.265454 GGAGCCGAGGGAGGAGAAAA 61.265 60.000 0.00 0.00 0.00 2.29
1079 1420 1.686110 GGAGCCGAGGGAGGAGAAA 60.686 63.158 0.00 0.00 0.00 2.52
1080 1421 2.042843 GGAGCCGAGGGAGGAGAA 60.043 66.667 0.00 0.00 0.00 2.87
1093 1434 1.870055 TAAGACGTGTCCACCGGAGC 61.870 60.000 9.46 0.00 29.39 4.70
1094 1435 0.599558 TTAAGACGTGTCCACCGGAG 59.400 55.000 9.46 0.00 29.39 4.63
1100 1441 0.599558 CTCCGGTTAAGACGTGTCCA 59.400 55.000 0.00 0.00 0.00 4.02
1102 1443 0.038892 TGCTCCGGTTAAGACGTGTC 60.039 55.000 0.00 0.00 0.00 3.67
1103 1444 0.390124 TTGCTCCGGTTAAGACGTGT 59.610 50.000 0.00 0.00 0.00 4.49
1104 1445 1.068474 CTTGCTCCGGTTAAGACGTG 58.932 55.000 0.00 0.00 0.00 4.49
1112 1453 0.824759 CTAGGTAGCTTGCTCCGGTT 59.175 55.000 0.00 0.00 0.00 4.44
1226 1592 2.280728 TAGCTGTGCGTTGCTGCA 60.281 55.556 0.00 0.00 43.95 4.41
1229 1595 2.315925 ATATGTAGCTGTGCGTTGCT 57.684 45.000 0.00 2.89 42.67 3.91
1230 1596 2.863740 TGTATATGTAGCTGTGCGTTGC 59.136 45.455 0.00 0.00 0.00 4.17
1231 1597 3.490896 CCTGTATATGTAGCTGTGCGTTG 59.509 47.826 0.00 0.00 0.00 4.10
1232 1598 3.717707 CCTGTATATGTAGCTGTGCGTT 58.282 45.455 0.00 0.00 0.00 4.84
1233 1599 2.545952 GCCTGTATATGTAGCTGTGCGT 60.546 50.000 0.00 0.00 0.00 5.24
1234 1600 2.061773 GCCTGTATATGTAGCTGTGCG 58.938 52.381 0.00 0.00 0.00 5.34
1235 1601 3.062763 CTGCCTGTATATGTAGCTGTGC 58.937 50.000 0.00 0.00 0.00 4.57
1236 1602 3.062763 GCTGCCTGTATATGTAGCTGTG 58.937 50.000 0.00 0.00 0.00 3.66
1237 1603 2.968574 AGCTGCCTGTATATGTAGCTGT 59.031 45.455 6.56 0.00 39.77 4.40
1272 1640 3.118555 TGGAGTGTTGTTCTTTTCCGAGA 60.119 43.478 0.00 0.00 0.00 4.04
1314 1682 1.112315 CCATCCTCTCGTGCCTAGCT 61.112 60.000 0.00 0.00 0.00 3.32
1316 1684 0.387202 CACCATCCTCTCGTGCCTAG 59.613 60.000 0.00 0.00 0.00 3.02
1317 1685 0.033503 TCACCATCCTCTCGTGCCTA 60.034 55.000 0.00 0.00 0.00 3.93
1318 1686 0.904865 TTCACCATCCTCTCGTGCCT 60.905 55.000 0.00 0.00 0.00 4.75
1319 1687 0.741221 GTTCACCATCCTCTCGTGCC 60.741 60.000 0.00 0.00 0.00 5.01
1325 1693 1.296715 GCCGTGTTCACCATCCTCT 59.703 57.895 0.00 0.00 0.00 3.69
1561 1936 0.100682 AGTAGTGCTACGCCACATCG 59.899 55.000 3.99 0.00 40.80 3.84
1563 1938 0.895530 ACAGTAGTGCTACGCCACAT 59.104 50.000 0.00 0.00 40.80 3.21
1564 1939 1.471287 CTACAGTAGTGCTACGCCACA 59.529 52.381 0.00 0.00 40.80 4.17
1565 1940 1.471684 ACTACAGTAGTGCTACGCCAC 59.528 52.381 12.75 0.00 40.80 5.01
1567 1942 3.331251 GTACTACAGTAGTGCTACGCC 57.669 52.381 21.71 0.00 40.80 5.68
1575 1950 9.688592 GAAATACAACAACAGTACTACAGTAGT 57.311 33.333 17.51 17.51 42.68 2.73
1576 1951 9.909644 AGAAATACAACAACAGTACTACAGTAG 57.090 33.333 6.00 6.00 0.00 2.57
1577 1952 9.903682 GAGAAATACAACAACAGTACTACAGTA 57.096 33.333 0.00 0.00 0.00 2.74
1578 1953 8.418662 TGAGAAATACAACAACAGTACTACAGT 58.581 33.333 0.00 0.00 0.00 3.55
1579 1954 8.812147 TGAGAAATACAACAACAGTACTACAG 57.188 34.615 0.00 0.00 0.00 2.74
1580 1955 7.384115 GCTGAGAAATACAACAACAGTACTACA 59.616 37.037 0.00 0.00 0.00 2.74
1581 1956 7.148623 GGCTGAGAAATACAACAACAGTACTAC 60.149 40.741 0.00 0.00 0.00 2.73
1582 1957 6.872020 GGCTGAGAAATACAACAACAGTACTA 59.128 38.462 0.00 0.00 0.00 1.82
1583 1958 5.701290 GGCTGAGAAATACAACAACAGTACT 59.299 40.000 0.00 0.00 0.00 2.73
1584 1959 5.106673 GGGCTGAGAAATACAACAACAGTAC 60.107 44.000 0.00 0.00 0.00 2.73
1585 1960 5.001232 GGGCTGAGAAATACAACAACAGTA 58.999 41.667 0.00 0.00 0.00 2.74
1586 1961 3.821033 GGGCTGAGAAATACAACAACAGT 59.179 43.478 0.00 0.00 0.00 3.55
1587 1962 3.820467 TGGGCTGAGAAATACAACAACAG 59.180 43.478 0.00 0.00 0.00 3.16
1588 1963 3.568007 GTGGGCTGAGAAATACAACAACA 59.432 43.478 0.00 0.00 0.00 3.33
1589 1964 3.568007 TGTGGGCTGAGAAATACAACAAC 59.432 43.478 0.00 0.00 0.00 3.32
1590 1965 3.826524 TGTGGGCTGAGAAATACAACAA 58.173 40.909 0.00 0.00 0.00 2.83
1591 1966 3.500448 TGTGGGCTGAGAAATACAACA 57.500 42.857 0.00 0.00 0.00 3.33
1592 1967 3.758554 ACATGTGGGCTGAGAAATACAAC 59.241 43.478 0.00 0.00 0.00 3.32
1593 1968 3.758023 CACATGTGGGCTGAGAAATACAA 59.242 43.478 18.51 0.00 0.00 2.41
1594 1969 3.008923 TCACATGTGGGCTGAGAAATACA 59.991 43.478 25.16 0.00 0.00 2.29
1595 1970 3.609853 TCACATGTGGGCTGAGAAATAC 58.390 45.455 25.16 0.00 0.00 1.89
1611 1986 1.097232 CGGCAACCATGTCATCACAT 58.903 50.000 0.00 0.00 44.72 3.21
1612 1987 0.959867 CCGGCAACCATGTCATCACA 60.960 55.000 0.00 0.00 36.78 3.58
1613 1988 0.676466 TCCGGCAACCATGTCATCAC 60.676 55.000 0.00 0.00 0.00 3.06
1617 1992 1.173043 GAAATCCGGCAACCATGTCA 58.827 50.000 0.00 0.00 0.00 3.58
1618 1993 1.133025 CTGAAATCCGGCAACCATGTC 59.867 52.381 0.00 0.00 0.00 3.06
1619 1994 1.176527 CTGAAATCCGGCAACCATGT 58.823 50.000 0.00 0.00 0.00 3.21
1620 1995 0.457035 CCTGAAATCCGGCAACCATG 59.543 55.000 0.00 0.00 0.00 3.66
1621 1996 1.322538 GCCTGAAATCCGGCAACCAT 61.323 55.000 10.55 0.00 45.59 3.55
1622 1997 1.976474 GCCTGAAATCCGGCAACCA 60.976 57.895 10.55 0.00 45.59 3.67
1628 2003 1.200020 GTTGAACAGCCTGAAATCCGG 59.800 52.381 0.00 0.00 0.00 5.14
1630 2005 3.365364 CGAAGTTGAACAGCCTGAAATCC 60.365 47.826 0.00 0.00 0.00 3.01
1632 2007 2.554032 CCGAAGTTGAACAGCCTGAAAT 59.446 45.455 0.00 0.00 0.00 2.17
1729 2110 3.118775 CCGTGGTGAAGGAGATGTGATTA 60.119 47.826 0.00 0.00 0.00 1.75
1820 2215 2.361119 AGTTCTCACGACACTTGCTACA 59.639 45.455 0.00 0.00 0.00 2.74
1821 2216 2.726760 CAGTTCTCACGACACTTGCTAC 59.273 50.000 0.00 0.00 0.00 3.58
1822 2217 2.621526 TCAGTTCTCACGACACTTGCTA 59.378 45.455 0.00 0.00 0.00 3.49
1823 2218 1.409064 TCAGTTCTCACGACACTTGCT 59.591 47.619 0.00 0.00 0.00 3.91
1834 2229 3.879295 CCTTTTGTGCTTCTCAGTTCTCA 59.121 43.478 0.00 0.00 0.00 3.27
1835 2230 4.130118 TCCTTTTGTGCTTCTCAGTTCTC 58.870 43.478 0.00 0.00 0.00 2.87
1836 2231 4.156455 TCCTTTTGTGCTTCTCAGTTCT 57.844 40.909 0.00 0.00 0.00 3.01
1837 2232 4.900635 TTCCTTTTGTGCTTCTCAGTTC 57.099 40.909 0.00 0.00 0.00 3.01
1838 2233 4.462483 TGTTTCCTTTTGTGCTTCTCAGTT 59.538 37.500 0.00 0.00 0.00 3.16
1839 2234 4.016444 TGTTTCCTTTTGTGCTTCTCAGT 58.984 39.130 0.00 0.00 0.00 3.41
1840 2235 4.637483 TGTTTCCTTTTGTGCTTCTCAG 57.363 40.909 0.00 0.00 0.00 3.35
1891 2300 0.041312 GGTTGCATGTGTCGTGTGAC 60.041 55.000 0.00 0.00 45.71 3.67
1919 2328 1.387295 TTGCATGTGTCACCCGCAAA 61.387 50.000 20.73 9.31 39.47 3.68
1920 2329 1.825622 TTGCATGTGTCACCCGCAA 60.826 52.632 19.67 19.67 40.08 4.85
1921 2330 2.203266 TTGCATGTGTCACCCGCA 60.203 55.556 11.29 11.29 38.10 5.69
1922 2331 1.795170 AAGTTGCATGTGTCACCCGC 61.795 55.000 0.00 3.67 0.00 6.13
1923 2332 0.040157 CAAGTTGCATGTGTCACCCG 60.040 55.000 0.00 0.00 0.00 5.28
1924 2333 0.318955 GCAAGTTGCATGTGTCACCC 60.319 55.000 22.90 0.00 44.26 4.61
1969 2422 3.862267 CGATCTGCTTCTCGAAGAATTGT 59.138 43.478 10.68 0.00 40.79 2.71
2031 2488 1.354337 CGAGCGTGGTCACAAGATGG 61.354 60.000 1.90 0.00 0.00 3.51
2077 2538 2.849162 GGGATGGATGGAGGCGGA 60.849 66.667 0.00 0.00 0.00 5.54
2081 2542 2.109517 CTCTGCGGGATGGATGGAGG 62.110 65.000 0.00 0.00 0.00 4.30
2086 2547 0.540597 TCGATCTCTGCGGGATGGAT 60.541 55.000 0.00 0.00 0.00 3.41
2107 2568 2.107366 CCAGAAGGAGGAAGGAGAGAC 58.893 57.143 0.00 0.00 36.89 3.36
2125 2586 1.894282 TGCGTGGCGAACAAATCCA 60.894 52.632 0.00 0.00 0.00 3.41
2277 2740 3.381272 ACATTGGCCAAGATAATCAACCG 59.619 43.478 24.94 2.82 0.00 4.44
2278 2741 4.402155 TGACATTGGCCAAGATAATCAACC 59.598 41.667 24.94 4.37 0.00 3.77
2320 2784 5.748630 GCACACGTATTGATCTGATCTACAA 59.251 40.000 17.82 6.03 0.00 2.41
2387 3075 3.491342 AGTGCTAGCATGCTAGTAGCTA 58.509 45.455 40.85 25.53 45.67 3.32
2388 3076 2.315176 AGTGCTAGCATGCTAGTAGCT 58.685 47.619 40.85 32.96 45.67 3.32
2389 3077 2.810439 AGTGCTAGCATGCTAGTAGC 57.190 50.000 40.85 34.18 45.67 3.58
2390 3078 4.038042 TGGTAAGTGCTAGCATGCTAGTAG 59.962 45.833 40.85 27.79 45.67 2.57
2391 3079 3.958147 TGGTAAGTGCTAGCATGCTAGTA 59.042 43.478 40.85 37.38 45.67 1.82
2392 3080 2.766263 TGGTAAGTGCTAGCATGCTAGT 59.234 45.455 40.85 29.25 45.67 2.57
2393 3081 3.459232 TGGTAAGTGCTAGCATGCTAG 57.541 47.619 39.05 39.05 46.41 3.42
2394 3082 3.995199 GATGGTAAGTGCTAGCATGCTA 58.005 45.455 25.40 25.40 46.41 3.49
2395 3083 2.843701 GATGGTAAGTGCTAGCATGCT 58.156 47.619 25.99 25.99 46.41 3.79
2396 3084 1.876156 GGATGGTAAGTGCTAGCATGC 59.124 52.381 22.51 10.51 46.41 4.06
2397 3085 2.138320 CGGATGGTAAGTGCTAGCATG 58.862 52.381 22.51 0.00 46.41 4.06
2399 3087 1.191535 ACGGATGGTAAGTGCTAGCA 58.808 50.000 14.93 14.93 42.07 3.49
2400 3088 2.202566 GAACGGATGGTAAGTGCTAGC 58.797 52.381 8.10 8.10 0.00 3.42
2401 3089 2.167693 TGGAACGGATGGTAAGTGCTAG 59.832 50.000 0.00 0.00 0.00 3.42
2402 3090 2.181125 TGGAACGGATGGTAAGTGCTA 58.819 47.619 0.00 0.00 0.00 3.49
2403 3091 0.981183 TGGAACGGATGGTAAGTGCT 59.019 50.000 0.00 0.00 0.00 4.40
2404 3092 1.670811 CATGGAACGGATGGTAAGTGC 59.329 52.381 0.00 0.00 0.00 4.40
2405 3093 2.288666 CCATGGAACGGATGGTAAGTG 58.711 52.381 5.56 0.00 36.38 3.16
2406 3094 2.710096 CCATGGAACGGATGGTAAGT 57.290 50.000 5.56 0.00 36.38 2.24
2423 3111 2.710377 CATCCAAGATGAACGGAACCA 58.290 47.619 0.00 0.00 31.18 3.67
2491 3206 6.128007 TGTTTTGGTGTTGTGTTTGTTTTGTT 60.128 30.769 0.00 0.00 0.00 2.83
2494 3209 6.625873 ATGTTTTGGTGTTGTGTTTGTTTT 57.374 29.167 0.00 0.00 0.00 2.43
2495 3210 6.931840 ACTATGTTTTGGTGTTGTGTTTGTTT 59.068 30.769 0.00 0.00 0.00 2.83
2512 3227 9.649167 GTACTCCACTATGTTGTAACTATGTTT 57.351 33.333 0.00 0.00 0.00 2.83
2568 3301 3.985127 TCCTCATGGGCTGATTTTCAAT 58.015 40.909 0.00 0.00 32.10 2.57
2646 3574 0.324923 AAGGGTGGACATGCATGCAT 60.325 50.000 27.46 27.46 37.08 3.96
2647 3575 1.077086 AAGGGTGGACATGCATGCA 59.923 52.632 26.53 25.04 0.00 3.96
2688 3633 9.343539 GGACTCAGGACTTTATTTTATGCTAAT 57.656 33.333 0.00 0.00 0.00 1.73
2689 3634 8.548877 AGGACTCAGGACTTTATTTTATGCTAA 58.451 33.333 0.00 0.00 0.00 3.09
2730 3679 0.668401 GGTGGTACGGTGTACACTGC 60.668 60.000 30.50 17.26 41.31 4.40
2832 3781 4.148825 CGAACAGGGCGAGGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
2839 3788 1.586564 GACGAGATCGAACAGGGCG 60.587 63.158 9.58 0.00 43.02 6.13
3004 3966 3.250323 CGTGTCGCGCTCCATCAG 61.250 66.667 5.56 0.00 0.00 2.90
3186 4178 2.923655 CACACACACGACACATATCCTC 59.076 50.000 0.00 0.00 0.00 3.71
3212 4206 0.318699 ACGCATCATATCCGTCCACG 60.319 55.000 0.00 0.00 39.44 4.94
3218 4212 1.261354 CCACACAACGCATCATATCCG 59.739 52.381 0.00 0.00 0.00 4.18
3250 4251 2.047274 ACGTCAGCCCATGAACCG 60.047 61.111 0.00 0.00 40.43 4.44
3256 4257 2.048222 CACGACACGTCAGCCCAT 60.048 61.111 0.00 0.00 38.32 4.00
3271 4272 4.331443 TGCATACGATACCAATCAACACAC 59.669 41.667 0.00 0.00 31.93 3.82
3740 4747 2.664851 CGTCCTCGCAAGCCAACA 60.665 61.111 0.00 0.00 37.18 3.33
3803 4810 4.747605 GGCAAAAGAAACCGCAGAAATAAA 59.252 37.500 0.00 0.00 0.00 1.40
3806 4813 2.547855 GGGCAAAAGAAACCGCAGAAAT 60.548 45.455 0.00 0.00 0.00 2.17
3892 4907 4.673761 CGCATGCAGCTGAATACAATTTAG 59.326 41.667 20.43 0.00 42.61 1.85
3921 4936 3.706140 CGTAAGCGATGGCCAGAC 58.294 61.111 13.05 7.15 41.24 3.51
3972 4987 0.105607 ACTAGCTACCTACCCCCAGC 60.106 60.000 0.00 0.00 0.00 4.85
3973 4988 1.705873 CACTAGCTACCTACCCCCAG 58.294 60.000 0.00 0.00 0.00 4.45
3974 4989 0.263765 CCACTAGCTACCTACCCCCA 59.736 60.000 0.00 0.00 0.00 4.96
3975 4990 1.120184 GCCACTAGCTACCTACCCCC 61.120 65.000 0.00 0.00 38.99 5.40
3976 4991 2.438730 GCCACTAGCTACCTACCCC 58.561 63.158 0.00 0.00 38.99 4.95
4038 5064 5.979517 TGAATACACAGAATAGATCACAGCG 59.020 40.000 0.00 0.00 0.00 5.18
4040 5066 9.322773 ACATTGAATACACAGAATAGATCACAG 57.677 33.333 0.00 0.00 0.00 3.66
4065 5103 4.631813 GGGGCGATACTGAATGATCATTAC 59.368 45.833 20.75 14.18 34.37 1.89
4068 5106 2.639347 TGGGGCGATACTGAATGATCAT 59.361 45.455 1.18 1.18 34.37 2.45
4082 5120 0.551396 TGTAGAGAGAGATGGGGCGA 59.449 55.000 0.00 0.00 0.00 5.54
4083 5121 0.958091 CTGTAGAGAGAGATGGGGCG 59.042 60.000 0.00 0.00 0.00 6.13
4084 5122 0.678950 GCTGTAGAGAGAGATGGGGC 59.321 60.000 0.00 0.00 0.00 5.80
4085 5123 2.380064 AGCTGTAGAGAGAGATGGGG 57.620 55.000 0.00 0.00 0.00 4.96
4086 5124 5.815581 ACTATAGCTGTAGAGAGAGATGGG 58.184 45.833 22.80 0.00 0.00 4.00
4087 5125 7.549134 CACTACTATAGCTGTAGAGAGAGATGG 59.451 44.444 22.80 4.50 39.61 3.51
4150 5526 8.456904 TGTCGTGACAATCTTTAAGTATACAC 57.543 34.615 5.50 0.00 38.56 2.90
4191 5568 9.838339 AGATCCATAAACCTTTATACTCTGTTG 57.162 33.333 0.00 0.00 32.39 3.33
4196 5573 9.843334 CGAGTAGATCCATAAACCTTTATACTC 57.157 37.037 0.00 0.00 32.84 2.59
4200 5577 8.246430 TGTCGAGTAGATCCATAAACCTTTAT 57.754 34.615 0.00 0.00 33.82 1.40
4201 5578 7.649533 TGTCGAGTAGATCCATAAACCTTTA 57.350 36.000 0.00 0.00 0.00 1.85
4203 5580 6.070995 TGTTGTCGAGTAGATCCATAAACCTT 60.071 38.462 0.00 0.00 0.00 3.50
4207 5584 7.156000 TGTTTGTTGTCGAGTAGATCCATAAA 58.844 34.615 0.00 0.00 0.00 1.40
4329 6293 0.246360 ACAAGTCGCCGATCACATGA 59.754 50.000 0.00 0.00 0.00 3.07
4501 6469 2.285977 GCATACCCTTTGACTAACCGG 58.714 52.381 0.00 0.00 0.00 5.28
4553 6521 6.381801 GGTTGACTGATCTGGTTAACAATTG 58.618 40.000 19.66 3.24 35.70 2.32
4590 6558 0.539438 AATTCCTGACCGCTGGCAAA 60.539 50.000 0.00 0.00 33.46 3.68
4730 6699 4.368315 TGCACTGTGTAGTTTCTGTACAG 58.632 43.478 17.17 17.17 43.20 2.74
4748 6717 6.147581 CCATCTATAATTCAACATGCTGCAC 58.852 40.000 3.57 0.00 0.00 4.57
4810 6779 1.750351 GCATACTCGTGCGTATTCGA 58.250 50.000 0.00 0.00 39.71 3.71
4818 6787 8.610855 TTAATATAAGATACGCATACTCGTGC 57.389 34.615 0.00 0.00 43.21 5.34
4836 6805 9.916360 GTCTTCCCCTTTCCTTCTTTTAATATA 57.084 33.333 0.00 0.00 0.00 0.86
4837 6806 8.398743 TGTCTTCCCCTTTCCTTCTTTTAATAT 58.601 33.333 0.00 0.00 0.00 1.28
4838 6807 7.668469 GTGTCTTCCCCTTTCCTTCTTTTAATA 59.332 37.037 0.00 0.00 0.00 0.98
4839 6808 6.493802 GTGTCTTCCCCTTTCCTTCTTTTAAT 59.506 38.462 0.00 0.00 0.00 1.40
4840 6809 5.831525 GTGTCTTCCCCTTTCCTTCTTTTAA 59.168 40.000 0.00 0.00 0.00 1.52
4841 6810 5.382616 GTGTCTTCCCCTTTCCTTCTTTTA 58.617 41.667 0.00 0.00 0.00 1.52
4842 6811 4.215908 GTGTCTTCCCCTTTCCTTCTTTT 58.784 43.478 0.00 0.00 0.00 2.27
4843 6812 3.436615 GGTGTCTTCCCCTTTCCTTCTTT 60.437 47.826 0.00 0.00 0.00 2.52
4844 6813 2.108425 GGTGTCTTCCCCTTTCCTTCTT 59.892 50.000 0.00 0.00 0.00 2.52
4845 6814 1.705745 GGTGTCTTCCCCTTTCCTTCT 59.294 52.381 0.00 0.00 0.00 2.85
4846 6815 1.271982 GGGTGTCTTCCCCTTTCCTTC 60.272 57.143 0.00 0.00 41.54 3.46
4847 6816 0.778083 GGGTGTCTTCCCCTTTCCTT 59.222 55.000 0.00 0.00 41.54 3.36
4848 6817 2.476081 GGGTGTCTTCCCCTTTCCT 58.524 57.895 0.00 0.00 41.54 3.36
4855 6824 1.303282 GTGGATGGGGTGTCTTCCC 59.697 63.158 0.00 0.00 46.31 3.97
4856 6825 1.078426 CGTGGATGGGGTGTCTTCC 60.078 63.158 0.00 0.00 0.00 3.46
4857 6826 1.078426 CCGTGGATGGGGTGTCTTC 60.078 63.158 0.00 0.00 0.00 2.87
4858 6827 1.423794 AACCGTGGATGGGGTGTCTT 61.424 55.000 0.00 0.00 36.45 3.01
4859 6828 0.545787 TAACCGTGGATGGGGTGTCT 60.546 55.000 0.00 0.00 36.45 3.41
4860 6829 0.544697 ATAACCGTGGATGGGGTGTC 59.455 55.000 0.00 0.00 36.45 3.67
4861 6830 0.996583 AATAACCGTGGATGGGGTGT 59.003 50.000 0.00 0.00 36.45 4.16
4862 6831 2.137810 AAATAACCGTGGATGGGGTG 57.862 50.000 0.00 0.00 36.45 4.61
4863 6832 2.577105 TGTAAATAACCGTGGATGGGGT 59.423 45.455 0.00 0.00 38.44 4.95
4864 6833 3.284793 TGTAAATAACCGTGGATGGGG 57.715 47.619 0.00 0.00 0.00 4.96
4865 6834 4.011023 TGTTGTAAATAACCGTGGATGGG 58.989 43.478 0.00 0.00 0.00 4.00
4866 6835 4.436317 CGTGTTGTAAATAACCGTGGATGG 60.436 45.833 0.00 0.00 0.00 3.51
4867 6836 4.152759 ACGTGTTGTAAATAACCGTGGATG 59.847 41.667 0.00 0.00 36.67 3.51
4868 6837 4.317488 ACGTGTTGTAAATAACCGTGGAT 58.683 39.130 0.00 0.00 36.67 3.41
4869 6838 3.726607 ACGTGTTGTAAATAACCGTGGA 58.273 40.909 0.00 0.00 36.67 4.02
4870 6839 3.742369 AGACGTGTTGTAAATAACCGTGG 59.258 43.478 0.00 0.00 37.48 4.94
4871 6840 4.977741 AGACGTGTTGTAAATAACCGTG 57.022 40.909 0.00 0.00 37.48 4.94
4872 6841 5.982516 TGTAAGACGTGTTGTAAATAACCGT 59.017 36.000 8.42 0.00 38.88 4.83
4873 6842 6.450845 TGTAAGACGTGTTGTAAATAACCG 57.549 37.500 8.42 0.00 33.49 4.44
4874 6843 6.787043 CGTTGTAAGACGTGTTGTAAATAACC 59.213 38.462 8.42 0.00 38.19 2.85
4875 6844 6.298336 GCGTTGTAAGACGTGTTGTAAATAAC 59.702 38.462 8.42 2.24 44.50 1.89
4876 6845 6.019237 TGCGTTGTAAGACGTGTTGTAAATAA 60.019 34.615 8.42 0.00 44.50 1.40
4877 6846 5.461407 TGCGTTGTAAGACGTGTTGTAAATA 59.539 36.000 8.42 0.00 44.50 1.40
4878 6847 4.270566 TGCGTTGTAAGACGTGTTGTAAAT 59.729 37.500 8.42 0.00 44.50 1.40
4879 6848 3.615937 TGCGTTGTAAGACGTGTTGTAAA 59.384 39.130 8.42 0.00 44.50 2.01
4880 6849 3.185330 TGCGTTGTAAGACGTGTTGTAA 58.815 40.909 8.42 0.27 44.50 2.41
4881 6850 2.807044 TGCGTTGTAAGACGTGTTGTA 58.193 42.857 8.42 0.00 44.50 2.41
4882 6851 1.642728 TGCGTTGTAAGACGTGTTGT 58.357 45.000 8.42 0.00 44.50 3.32
4883 6852 2.941891 ATGCGTTGTAAGACGTGTTG 57.058 45.000 8.42 0.00 44.50 3.33
4884 6853 2.222445 GGAATGCGTTGTAAGACGTGTT 59.778 45.455 2.58 2.58 44.50 3.32
4885 6854 1.796459 GGAATGCGTTGTAAGACGTGT 59.204 47.619 0.00 0.00 44.50 4.49
4886 6855 1.795872 TGGAATGCGTTGTAAGACGTG 59.204 47.619 0.00 0.00 44.50 4.49
4887 6856 1.796459 GTGGAATGCGTTGTAAGACGT 59.204 47.619 0.00 0.00 44.50 4.34
4888 6857 1.127951 GGTGGAATGCGTTGTAAGACG 59.872 52.381 0.00 0.00 45.40 4.18
4889 6858 1.467342 GGGTGGAATGCGTTGTAAGAC 59.533 52.381 0.00 0.00 0.00 3.01
4890 6859 1.612199 GGGGTGGAATGCGTTGTAAGA 60.612 52.381 0.00 0.00 0.00 2.10
4891 6860 0.808755 GGGGTGGAATGCGTTGTAAG 59.191 55.000 0.00 0.00 0.00 2.34
4892 6861 0.609681 GGGGGTGGAATGCGTTGTAA 60.610 55.000 0.00 0.00 0.00 2.41
4893 6862 1.001887 GGGGGTGGAATGCGTTGTA 60.002 57.895 0.00 0.00 0.00 2.41
4894 6863 2.282887 GGGGGTGGAATGCGTTGT 60.283 61.111 0.00 0.00 0.00 3.32
4895 6864 1.905843 TTGGGGGTGGAATGCGTTG 60.906 57.895 0.00 0.00 0.00 4.10
4896 6865 1.906333 GTTGGGGGTGGAATGCGTT 60.906 57.895 0.00 0.00 0.00 4.84
4897 6866 2.282887 GTTGGGGGTGGAATGCGT 60.283 61.111 0.00 0.00 0.00 5.24
4898 6867 2.035626 AGTTGGGGGTGGAATGCG 59.964 61.111 0.00 0.00 0.00 4.73
4899 6868 0.324645 ATGAGTTGGGGGTGGAATGC 60.325 55.000 0.00 0.00 0.00 3.56
4900 6869 1.686115 GGATGAGTTGGGGGTGGAATG 60.686 57.143 0.00 0.00 0.00 2.67
4901 6870 0.631212 GGATGAGTTGGGGGTGGAAT 59.369 55.000 0.00 0.00 0.00 3.01
4902 6871 0.477597 AGGATGAGTTGGGGGTGGAA 60.478 55.000 0.00 0.00 0.00 3.53
4903 6872 0.419865 TAGGATGAGTTGGGGGTGGA 59.580 55.000 0.00 0.00 0.00 4.02
4904 6873 0.839946 CTAGGATGAGTTGGGGGTGG 59.160 60.000 0.00 0.00 0.00 4.61
4905 6874 0.181350 GCTAGGATGAGTTGGGGGTG 59.819 60.000 0.00 0.00 0.00 4.61
4906 6875 1.338136 CGCTAGGATGAGTTGGGGGT 61.338 60.000 0.00 0.00 0.00 4.95
4907 6876 1.447643 CGCTAGGATGAGTTGGGGG 59.552 63.158 0.00 0.00 0.00 5.40
4908 6877 1.048724 TCCGCTAGGATGAGTTGGGG 61.049 60.000 0.00 0.00 42.75 4.96
4909 6878 2.516448 TCCGCTAGGATGAGTTGGG 58.484 57.895 0.00 0.00 42.75 4.12
4924 6893 2.354773 GCGAGGGCGAGTAATCCG 60.355 66.667 0.00 0.00 40.82 4.18
4925 6894 1.007154 GAGCGAGGGCGAGTAATCC 60.007 63.158 0.00 0.00 46.35 3.01
4926 6895 1.007154 GGAGCGAGGGCGAGTAATC 60.007 63.158 0.00 0.00 46.35 1.75
4927 6896 1.756950 TGGAGCGAGGGCGAGTAAT 60.757 57.895 0.00 0.00 46.35 1.89
4928 6897 2.361992 TGGAGCGAGGGCGAGTAA 60.362 61.111 0.00 0.00 46.35 2.24
4929 6898 3.138798 GTGGAGCGAGGGCGAGTA 61.139 66.667 0.00 0.00 46.35 2.59
4931 6900 4.200283 GAGTGGAGCGAGGGCGAG 62.200 72.222 0.00 0.00 46.35 5.03
4933 6902 3.781770 GATGAGTGGAGCGAGGGCG 62.782 68.421 0.00 0.00 46.35 6.13
4934 6903 1.109920 TAGATGAGTGGAGCGAGGGC 61.110 60.000 0.00 0.00 40.37 5.19
4935 6904 0.671251 GTAGATGAGTGGAGCGAGGG 59.329 60.000 0.00 0.00 0.00 4.30
4936 6905 1.606668 GAGTAGATGAGTGGAGCGAGG 59.393 57.143 0.00 0.00 0.00 4.63
4937 6906 1.606668 GGAGTAGATGAGTGGAGCGAG 59.393 57.143 0.00 0.00 0.00 5.03
4938 6907 1.213182 AGGAGTAGATGAGTGGAGCGA 59.787 52.381 0.00 0.00 0.00 4.93
4939 6908 1.686355 AGGAGTAGATGAGTGGAGCG 58.314 55.000 0.00 0.00 0.00 5.03
4940 6909 6.492087 ACTTTATAGGAGTAGATGAGTGGAGC 59.508 42.308 0.00 0.00 0.00 4.70
4941 6910 8.356657 CAACTTTATAGGAGTAGATGAGTGGAG 58.643 40.741 0.00 0.00 0.00 3.86
4942 6911 8.059461 TCAACTTTATAGGAGTAGATGAGTGGA 58.941 37.037 0.00 0.00 0.00 4.02
4943 6912 8.239038 TCAACTTTATAGGAGTAGATGAGTGG 57.761 38.462 0.00 0.00 0.00 4.00
4946 6915 9.239002 CGTTTCAACTTTATAGGAGTAGATGAG 57.761 37.037 0.00 0.00 0.00 2.90
4947 6916 8.963725 TCGTTTCAACTTTATAGGAGTAGATGA 58.036 33.333 0.00 0.00 0.00 2.92
4948 6917 9.582431 TTCGTTTCAACTTTATAGGAGTAGATG 57.418 33.333 0.00 0.00 0.00 2.90
4950 6919 9.582431 CATTCGTTTCAACTTTATAGGAGTAGA 57.418 33.333 0.00 0.00 0.00 2.59
4951 6920 9.367444 ACATTCGTTTCAACTTTATAGGAGTAG 57.633 33.333 0.00 0.00 0.00 2.57
4952 6921 9.362539 GACATTCGTTTCAACTTTATAGGAGTA 57.637 33.333 0.00 0.00 0.00 2.59
4953 6922 8.095169 AGACATTCGTTTCAACTTTATAGGAGT 58.905 33.333 0.00 0.00 0.00 3.85
4954 6923 8.480643 AGACATTCGTTTCAACTTTATAGGAG 57.519 34.615 0.00 0.00 0.00 3.69
4955 6924 8.842358 AAGACATTCGTTTCAACTTTATAGGA 57.158 30.769 0.00 0.00 0.00 2.94
4956 6925 9.329913 CAAAGACATTCGTTTCAACTTTATAGG 57.670 33.333 0.00 0.00 0.00 2.57
4957 6926 9.878599 ACAAAGACATTCGTTTCAACTTTATAG 57.121 29.630 0.00 0.00 0.00 1.31
4958 6927 9.658475 CACAAAGACATTCGTTTCAACTTTATA 57.342 29.630 0.00 0.00 0.00 0.98
4959 6928 8.188139 ACACAAAGACATTCGTTTCAACTTTAT 58.812 29.630 0.00 0.00 0.00 1.40
4960 6929 7.531716 ACACAAAGACATTCGTTTCAACTTTA 58.468 30.769 0.00 0.00 0.00 1.85
4961 6930 6.386654 ACACAAAGACATTCGTTTCAACTTT 58.613 32.000 0.00 0.00 0.00 2.66
4962 6931 5.949735 ACACAAAGACATTCGTTTCAACTT 58.050 33.333 0.00 0.00 0.00 2.66
4963 6932 5.560966 ACACAAAGACATTCGTTTCAACT 57.439 34.783 0.00 0.00 0.00 3.16
4964 6933 6.711579 TCTACACAAAGACATTCGTTTCAAC 58.288 36.000 0.00 0.00 0.00 3.18
4965 6934 6.912203 TCTACACAAAGACATTCGTTTCAA 57.088 33.333 0.00 0.00 0.00 2.69
4966 6935 6.314152 TGTTCTACACAAAGACATTCGTTTCA 59.686 34.615 0.00 0.00 29.87 2.69
4967 6936 6.711579 TGTTCTACACAAAGACATTCGTTTC 58.288 36.000 0.00 0.00 29.87 2.78
4968 6937 6.671614 TGTTCTACACAAAGACATTCGTTT 57.328 33.333 0.00 0.00 29.87 3.60
4983 6952 1.000506 GAGACAAGCGGGTGTTCTACA 59.999 52.381 0.00 0.00 0.00 2.74
4984 6953 1.672145 GGAGACAAGCGGGTGTTCTAC 60.672 57.143 0.00 0.00 0.00 2.59
4985 6954 0.606604 GGAGACAAGCGGGTGTTCTA 59.393 55.000 0.00 0.00 0.00 2.10
4986 6955 1.371558 GGAGACAAGCGGGTGTTCT 59.628 57.895 0.00 0.00 0.00 3.01
4987 6956 1.070786 TGGAGACAAGCGGGTGTTC 59.929 57.895 0.00 0.00 37.44 3.18
4988 6957 3.236391 TGGAGACAAGCGGGTGTT 58.764 55.556 0.00 0.00 37.44 3.32
4998 6967 0.976641 GAGTGTGGGACATGGAGACA 59.023 55.000 0.00 0.00 44.52 3.41
4999 6968 1.066573 CAGAGTGTGGGACATGGAGAC 60.067 57.143 0.00 0.00 44.52 3.36
5000 6969 1.203174 TCAGAGTGTGGGACATGGAGA 60.203 52.381 0.00 0.00 44.52 3.71
5001 6970 1.206610 CTCAGAGTGTGGGACATGGAG 59.793 57.143 0.00 0.00 44.52 3.86
5002 6971 1.269958 CTCAGAGTGTGGGACATGGA 58.730 55.000 0.00 0.00 44.52 3.41
5003 6972 0.251354 CCTCAGAGTGTGGGACATGG 59.749 60.000 0.00 0.00 44.52 3.66
5004 6973 0.392193 GCCTCAGAGTGTGGGACATG 60.392 60.000 0.00 0.00 44.52 3.21
5005 6974 1.892819 CGCCTCAGAGTGTGGGACAT 61.893 60.000 0.00 0.00 44.52 3.06
5006 6975 2.574018 CGCCTCAGAGTGTGGGACA 61.574 63.158 0.00 0.00 31.98 4.02
5007 6976 1.608717 ATCGCCTCAGAGTGTGGGAC 61.609 60.000 0.00 0.00 31.98 4.46
5008 6977 1.305297 ATCGCCTCAGAGTGTGGGA 60.305 57.895 0.00 0.00 31.98 4.37
5009 6978 1.142748 GATCGCCTCAGAGTGTGGG 59.857 63.158 0.00 0.00 31.98 4.61
5010 6979 1.142748 GGATCGCCTCAGAGTGTGG 59.857 63.158 0.00 0.00 34.32 4.17
5011 6980 1.226802 CGGATCGCCTCAGAGTGTG 60.227 63.158 0.00 0.00 0.00 3.82
5012 6981 1.658686 GACGGATCGCCTCAGAGTGT 61.659 60.000 0.00 0.00 0.00 3.55
5013 6982 1.064946 GACGGATCGCCTCAGAGTG 59.935 63.158 0.00 0.00 0.00 3.51
5014 6983 2.473760 CGACGGATCGCCTCAGAGT 61.474 63.158 0.00 0.00 42.43 3.24
5015 6984 2.329690 CGACGGATCGCCTCAGAG 59.670 66.667 0.00 0.00 42.43 3.35
5024 6993 0.172803 AGCACACCTTACGACGGATC 59.827 55.000 0.00 0.00 0.00 3.36
5025 6994 0.108804 CAGCACACCTTACGACGGAT 60.109 55.000 0.00 0.00 0.00 4.18
5026 6995 1.287815 CAGCACACCTTACGACGGA 59.712 57.895 0.00 0.00 0.00 4.69
5027 6996 2.380410 GCAGCACACCTTACGACGG 61.380 63.158 0.00 0.00 0.00 4.79
5028 6997 1.663388 TGCAGCACACCTTACGACG 60.663 57.895 0.00 0.00 0.00 5.12
5029 6998 1.860078 GTGCAGCACACCTTACGAC 59.140 57.895 21.22 0.00 44.02 4.34
5030 6999 4.354155 GTGCAGCACACCTTACGA 57.646 55.556 21.22 0.00 44.02 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.