Multiple sequence alignment - TraesCS3D01G129900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G129900 chr3D 100.000 7495 0 0 1 7495 89904943 89897449 0.000000e+00 13841.0
1 TraesCS3D01G129900 chr3D 80.634 3346 540 61 1239 4523 468758824 468762122 0.000000e+00 2490.0
2 TraesCS3D01G129900 chr3D 87.097 310 39 1 4591 4900 468762707 468763015 4.300000e-92 350.0
3 TraesCS3D01G129900 chr3D 82.443 262 42 4 4957 5216 468763156 468763415 7.570000e-55 226.0
4 TraesCS3D01G129900 chr3D 85.556 90 7 3 381 469 67062522 67062438 1.040000e-13 89.8
5 TraesCS3D01G129900 chr3D 85.393 89 7 4 381 464 170677825 170677738 3.730000e-13 87.9
6 TraesCS3D01G129900 chr3A 96.879 5030 136 9 932 5953 106440855 106435839 0.000000e+00 8399.0
7 TraesCS3D01G129900 chr3A 79.988 3273 508 88 1329 4523 610541308 610544511 0.000000e+00 2279.0
8 TraesCS3D01G129900 chr3A 84.971 1537 139 45 6007 7495 106435751 106434259 0.000000e+00 1474.0
9 TraesCS3D01G129900 chr3A 86.183 427 35 11 487 891 106441385 106440961 2.480000e-119 440.0
10 TraesCS3D01G129900 chr3A 80.350 514 81 14 5397 5908 610546202 610546697 9.180000e-99 372.0
11 TraesCS3D01G129900 chr3A 86.774 310 40 1 4591 4900 610545408 610545716 2.000000e-90 344.0
12 TraesCS3D01G129900 chr3A 77.331 472 88 16 6032 6491 610546770 610547234 2.070000e-65 261.0
13 TraesCS3D01G129900 chr3A 82.510 263 42 4 4957 5217 610545858 610546118 2.100000e-55 228.0
14 TraesCS3D01G129900 chr4B 91.074 5669 385 61 943 6567 519051799 519046208 0.000000e+00 7553.0
15 TraesCS3D01G129900 chr4B 88.043 92 7 3 378 465 544445285 544445376 1.030000e-18 106.0
16 TraesCS3D01G129900 chr3B 96.890 4469 116 9 932 5384 139415450 139410989 0.000000e+00 7461.0
17 TraesCS3D01G129900 chr3B 80.914 3259 522 66 1329 4523 622394968 622398190 0.000000e+00 2481.0
18 TraesCS3D01G129900 chr3B 87.574 1521 125 36 6008 7495 139410216 139408727 0.000000e+00 1703.0
19 TraesCS3D01G129900 chr3B 95.525 581 21 3 5374 5953 139410971 139410395 0.000000e+00 924.0
20 TraesCS3D01G129900 chr3B 83.771 419 36 11 489 877 139415984 139415568 1.190000e-97 368.0
21 TraesCS3D01G129900 chr3B 84.259 324 50 1 4577 4900 622398557 622398879 1.570000e-81 315.0
22 TraesCS3D01G129900 chr3B 82.443 262 42 4 4957 5216 622399026 622399285 7.570000e-55 226.0
23 TraesCS3D01G129900 chr3B 78.595 299 39 19 39 323 139416342 139416055 2.780000e-39 174.0
24 TraesCS3D01G129900 chr4D 92.416 4918 302 27 1053 5953 422085547 422080684 0.000000e+00 6950.0
25 TraesCS3D01G129900 chr4D 90.203 541 49 2 6028 6567 422080574 422080037 0.000000e+00 702.0
26 TraesCS3D01G129900 chr4D 86.207 261 18 2 1331 1588 418520802 418520557 4.460000e-67 267.0
27 TraesCS3D01G129900 chr4A 93.858 3517 195 12 1881 5386 41970250 41973756 0.000000e+00 5278.0
28 TraesCS3D01G129900 chr4A 88.526 1194 115 15 5385 6567 41973840 41975022 0.000000e+00 1426.0
29 TraesCS3D01G129900 chr4A 88.837 851 50 12 1053 1888 41968261 41969081 0.000000e+00 1003.0
30 TraesCS3D01G129900 chr6D 85.099 1510 179 24 2821 4324 138806259 138804790 0.000000e+00 1500.0
31 TraesCS3D01G129900 chrUn 84.722 1512 174 36 2821 4324 315578370 315576908 0.000000e+00 1459.0
32 TraesCS3D01G129900 chr6B 86.192 956 109 15 3443 4392 714810232 714811170 0.000000e+00 1013.0
33 TraesCS3D01G129900 chr6B 87.097 93 4 4 378 465 658611714 658611803 1.720000e-16 99.0
34 TraesCS3D01G129900 chr1B 88.834 403 45 0 2818 3220 49437190 49437592 5.220000e-136 496.0
35 TraesCS3D01G129900 chr1B 77.341 331 71 4 5418 5746 545207897 545207569 7.670000e-45 193.0
36 TraesCS3D01G129900 chr7B 85.115 262 23 11 1331 1591 682958133 682957887 3.470000e-63 254.0
37 TraesCS3D01G129900 chr1D 77.500 320 66 5 5418 5734 405366753 405366437 3.570000e-43 187.0
38 TraesCS3D01G129900 chr1D 88.636 88 7 2 378 465 380609608 380609524 3.700000e-18 104.0
39 TraesCS3D01G129900 chr2D 77.116 319 69 4 5418 5734 534363925 534364241 1.660000e-41 182.0
40 TraesCS3D01G129900 chr2D 85.227 88 6 4 381 465 376700817 376700734 4.820000e-12 84.2
41 TraesCS3D01G129900 chr5D 88.298 94 5 4 378 465 109811411 109811318 2.860000e-19 108.0
42 TraesCS3D01G129900 chr5D 85.263 95 6 6 378 465 109811325 109811418 2.880000e-14 91.6
43 TraesCS3D01G129900 chr7A 85.714 91 11 2 378 466 7501155 7501065 2.230000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G129900 chr3D 89897449 89904943 7494 True 13841.000000 13841 100.000000 1 7495 1 chr3D.!!$R2 7494
1 TraesCS3D01G129900 chr3D 468758824 468763415 4591 False 1022.000000 2490 83.391333 1239 5216 3 chr3D.!!$F1 3977
2 TraesCS3D01G129900 chr3A 106434259 106441385 7126 True 3437.666667 8399 89.344333 487 7495 3 chr3A.!!$R1 7008
3 TraesCS3D01G129900 chr3A 610541308 610547234 5926 False 696.800000 2279 81.390600 1329 6491 5 chr3A.!!$F1 5162
4 TraesCS3D01G129900 chr4B 519046208 519051799 5591 True 7553.000000 7553 91.074000 943 6567 1 chr4B.!!$R1 5624
5 TraesCS3D01G129900 chr3B 139408727 139416342 7615 True 2126.000000 7461 88.471000 39 7495 5 chr3B.!!$R1 7456
6 TraesCS3D01G129900 chr3B 622394968 622399285 4317 False 1007.333333 2481 82.538667 1329 5216 3 chr3B.!!$F1 3887
7 TraesCS3D01G129900 chr4D 422080037 422085547 5510 True 3826.000000 6950 91.309500 1053 6567 2 chr4D.!!$R2 5514
8 TraesCS3D01G129900 chr4A 41968261 41975022 6761 False 2569.000000 5278 90.407000 1053 6567 3 chr4A.!!$F1 5514
9 TraesCS3D01G129900 chr6D 138804790 138806259 1469 True 1500.000000 1500 85.099000 2821 4324 1 chr6D.!!$R1 1503
10 TraesCS3D01G129900 chrUn 315576908 315578370 1462 True 1459.000000 1459 84.722000 2821 4324 1 chrUn.!!$R1 1503
11 TraesCS3D01G129900 chr6B 714810232 714811170 938 False 1013.000000 1013 86.192000 3443 4392 1 chr6B.!!$F2 949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.100682 TACTCTGATCGAAGCCGCAC 59.899 55.000 0.00 0.0 35.37 5.34 F
355 356 0.744281 TCTGATCGAAGCCGCACATA 59.256 50.000 0.00 0.0 35.37 2.29 F
660 667 0.988832 TAATTGCTCTTGGGACGGGT 59.011 50.000 0.00 0.0 0.00 5.28 F
823 844 2.280389 CCGATCCGCCCATCACTG 60.280 66.667 0.00 0.0 0.00 3.66 F
1980 3313 2.605823 GCTCTACGCGCTCATCTACAAT 60.606 50.000 5.73 0.0 0.00 2.71 F
3086 4435 2.293399 AGGTCAAGATTTGCGGAACAAC 59.707 45.455 0.00 0.0 38.23 3.32 F
4297 5726 2.172293 GCATCTCCTCAGATTTCCTGGT 59.828 50.000 0.00 0.0 43.12 4.00 F
5817 8322 1.003580 TGGAAGTGGCAGTCTGAATCC 59.996 52.381 3.32 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 3313 1.899534 GCCAACGTAGGTGGCCAAA 60.900 57.895 17.64 0.0 42.52 3.28 R
2044 3380 4.796495 CCCCTTGCTGGCGTACCC 62.796 72.222 0.00 0.0 33.59 3.69 R
2775 4111 4.102210 ACCTTGGTCTGAATCATCATCGAT 59.898 41.667 0.00 0.0 34.37 3.59 R
3074 4423 1.135546 CATATGCCGTTGTTCCGCAAA 60.136 47.619 0.00 0.0 39.03 3.68 R
3144 4495 0.250234 TGTCCATCTCCTTGCCGAAG 59.750 55.000 0.00 0.0 0.00 3.79 R
5165 7551 1.218316 CCCTCTGACGGCCAGTTAC 59.782 63.158 2.24 0.0 43.38 2.50 R
5825 8330 0.323725 TCCAAGGCCTGAAATGGAGC 60.324 55.000 18.34 0.0 37.05 4.70 R
7176 9860 0.037447 AAAGGGGCTCTCTGTGCTTC 59.963 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.739331 ATAAAGAACCCTGAGATGGAGTAG 57.261 41.667 0.00 0.00 0.00 2.57
27 28 4.883021 AGAACCCTGAGATGGAGTAGTA 57.117 45.455 0.00 0.00 0.00 1.82
28 29 5.208294 AGAACCCTGAGATGGAGTAGTAA 57.792 43.478 0.00 0.00 0.00 2.24
30 31 6.206042 AGAACCCTGAGATGGAGTAGTAAAT 58.794 40.000 0.00 0.00 0.00 1.40
32 33 6.893020 ACCCTGAGATGGAGTAGTAAATTT 57.107 37.500 0.00 0.00 0.00 1.82
33 34 7.272144 ACCCTGAGATGGAGTAGTAAATTTT 57.728 36.000 0.00 0.00 0.00 1.82
34 35 7.339482 ACCCTGAGATGGAGTAGTAAATTTTC 58.661 38.462 0.00 0.00 0.00 2.29
35 36 7.037586 ACCCTGAGATGGAGTAGTAAATTTTCA 60.038 37.037 0.00 0.00 0.00 2.69
36 37 7.829211 CCCTGAGATGGAGTAGTAAATTTTCAA 59.171 37.037 0.00 0.00 0.00 2.69
37 38 9.231297 CCTGAGATGGAGTAGTAAATTTTCAAA 57.769 33.333 0.00 0.00 0.00 2.69
60 61 6.735678 AAAAGAAACAAGCGGAAAAATTGT 57.264 29.167 0.00 0.00 38.76 2.71
61 62 6.735678 AAAGAAACAAGCGGAAAAATTGTT 57.264 29.167 0.00 0.00 46.24 2.83
62 63 5.717038 AGAAACAAGCGGAAAAATTGTTG 57.283 34.783 3.55 0.00 44.18 3.33
63 64 5.175127 AGAAACAAGCGGAAAAATTGTTGT 58.825 33.333 3.55 0.00 44.18 3.32
64 65 6.334202 AGAAACAAGCGGAAAAATTGTTGTA 58.666 32.000 3.55 0.00 44.18 2.41
65 66 6.475402 AGAAACAAGCGGAAAAATTGTTGTAG 59.525 34.615 3.55 0.00 44.18 2.74
66 67 5.257082 ACAAGCGGAAAAATTGTTGTAGT 57.743 34.783 0.00 0.00 33.49 2.73
67 68 5.656480 ACAAGCGGAAAAATTGTTGTAGTT 58.344 33.333 0.00 0.00 33.49 2.24
68 69 5.746721 ACAAGCGGAAAAATTGTTGTAGTTC 59.253 36.000 0.00 0.00 33.49 3.01
69 70 4.866921 AGCGGAAAAATTGTTGTAGTTCC 58.133 39.130 0.00 0.00 32.81 3.62
70 71 4.339814 AGCGGAAAAATTGTTGTAGTTCCA 59.660 37.500 0.00 0.00 35.32 3.53
71 72 5.010617 AGCGGAAAAATTGTTGTAGTTCCAT 59.989 36.000 0.00 0.00 35.32 3.41
72 73 5.694458 GCGGAAAAATTGTTGTAGTTCCATT 59.306 36.000 0.00 0.00 35.32 3.16
73 74 6.201997 GCGGAAAAATTGTTGTAGTTCCATTT 59.798 34.615 0.00 0.00 35.32 2.32
74 75 7.382759 GCGGAAAAATTGTTGTAGTTCCATTTA 59.617 33.333 0.00 0.00 35.32 1.40
75 76 8.696175 CGGAAAAATTGTTGTAGTTCCATTTAC 58.304 33.333 0.00 0.00 35.32 2.01
81 82 8.918202 ATTGTTGTAGTTCCATTTACAGAAGA 57.082 30.769 0.00 0.00 31.95 2.87
82 83 7.962964 TGTTGTAGTTCCATTTACAGAAGAG 57.037 36.000 0.00 0.00 31.95 2.85
84 85 5.488341 TGTAGTTCCATTTACAGAAGAGGC 58.512 41.667 0.00 0.00 0.00 4.70
89 90 4.724399 TCCATTTACAGAAGAGGCACAAA 58.276 39.130 0.00 0.00 0.00 2.83
100 101 1.871039 GAGGCACAAACGACAAAGCTA 59.129 47.619 0.00 0.00 0.00 3.32
129 130 1.835531 TGTTATCGGGAGAGGGTTTCC 59.164 52.381 0.00 0.00 45.48 3.13
136 137 1.196012 GGAGAGGGTTTCCATCGTCT 58.804 55.000 0.00 0.00 34.74 4.18
181 182 6.387465 CGTGAGATGTACTGACTTCCTTTTA 58.613 40.000 0.00 0.00 30.74 1.52
183 184 6.590677 GTGAGATGTACTGACTTCCTTTTACC 59.409 42.308 0.00 0.00 31.55 2.85
188 189 4.203654 ACTGACTTCCTTTTACCCGATC 57.796 45.455 0.00 0.00 0.00 3.69
190 191 4.041198 ACTGACTTCCTTTTACCCGATCAA 59.959 41.667 0.00 0.00 0.00 2.57
191 192 4.575885 TGACTTCCTTTTACCCGATCAAG 58.424 43.478 0.00 0.00 0.00 3.02
192 193 4.041198 TGACTTCCTTTTACCCGATCAAGT 59.959 41.667 0.00 0.00 0.00 3.16
193 194 5.246656 TGACTTCCTTTTACCCGATCAAGTA 59.753 40.000 0.00 0.00 0.00 2.24
194 195 5.485620 ACTTCCTTTTACCCGATCAAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
195 196 5.012354 ACTTCCTTTTACCCGATCAAGTACA 59.988 40.000 0.00 0.00 0.00 2.90
196 197 5.486735 TCCTTTTACCCGATCAAGTACAA 57.513 39.130 0.00 0.00 0.00 2.41
198 199 5.012354 TCCTTTTACCCGATCAAGTACAAGT 59.988 40.000 13.12 0.00 28.59 3.16
199 200 5.350640 CCTTTTACCCGATCAAGTACAAGTC 59.649 44.000 13.12 0.00 28.59 3.01
200 201 5.471556 TTTACCCGATCAAGTACAAGTCA 57.528 39.130 0.00 0.00 0.00 3.41
202 203 2.028385 ACCCGATCAAGTACAAGTCACC 60.028 50.000 0.00 0.00 0.00 4.02
203 204 2.028476 CCCGATCAAGTACAAGTCACCA 60.028 50.000 0.00 0.00 0.00 4.17
205 206 4.253685 CCGATCAAGTACAAGTCACCAAT 58.746 43.478 0.00 0.00 0.00 3.16
207 208 4.690748 CGATCAAGTACAAGTCACCAATGT 59.309 41.667 0.00 0.00 0.00 2.71
208 209 5.389830 CGATCAAGTACAAGTCACCAATGTG 60.390 44.000 0.00 0.00 44.18 3.21
209 210 4.776349 TCAAGTACAAGTCACCAATGTGT 58.224 39.130 0.00 0.00 43.26 3.72
210 211 5.189928 TCAAGTACAAGTCACCAATGTGTT 58.810 37.500 0.00 0.00 43.26 3.32
211 212 6.350103 TCAAGTACAAGTCACCAATGTGTTA 58.650 36.000 0.00 0.00 43.26 2.41
212 213 6.824196 TCAAGTACAAGTCACCAATGTGTTAA 59.176 34.615 0.00 0.00 43.26 2.01
213 214 7.337184 TCAAGTACAAGTCACCAATGTGTTAAA 59.663 33.333 0.00 0.00 43.26 1.52
214 215 7.633193 AGTACAAGTCACCAATGTGTTAAAA 57.367 32.000 0.00 0.00 43.26 1.52
237 238 4.853924 AAAGTGCAAGTCACCAATAAGG 57.146 40.909 0.00 0.00 46.81 2.69
255 256 9.106070 CCAATAAGGTGTTACTGGACTTATAAC 57.894 37.037 0.00 0.00 37.68 1.89
256 257 9.886132 CAATAAGGTGTTACTGGACTTATAACT 57.114 33.333 0.00 0.00 34.31 2.24
258 259 9.886132 ATAAGGTGTTACTGGACTTATAACTTG 57.114 33.333 0.00 0.00 33.82 3.16
259 260 7.549147 AGGTGTTACTGGACTTATAACTTGA 57.451 36.000 0.00 0.00 31.42 3.02
267 268 8.990163 ACTGGACTTATAACTTGAAAAAGGAA 57.010 30.769 0.00 0.00 0.00 3.36
272 273 9.140286 GACTTATAACTTGAAAAAGGAAATGCC 57.860 33.333 0.00 0.00 0.00 4.40
278 279 4.540359 TGAAAAAGGAAATGCCAGGATG 57.460 40.909 0.00 0.00 40.02 3.51
282 283 0.333993 AGGAAATGCCAGGATGCTGT 59.666 50.000 13.65 0.00 40.02 4.40
283 284 1.188863 GGAAATGCCAGGATGCTGTT 58.811 50.000 13.65 0.23 36.34 3.16
290 291 1.340017 GCCAGGATGCTGTTGGACTTA 60.340 52.381 13.65 0.00 33.76 2.24
299 300 7.510685 AGGATGCTGTTGGACTTATTATCTCTA 59.489 37.037 0.00 0.00 0.00 2.43
301 302 7.898014 TGCTGTTGGACTTATTATCTCTAGA 57.102 36.000 0.00 0.00 0.00 2.43
318 319 7.082700 TCTCTAGATTGACGATCATCATAGC 57.917 40.000 5.46 0.00 37.22 2.97
319 320 6.656693 TCTCTAGATTGACGATCATCATAGCA 59.343 38.462 5.46 0.00 37.22 3.49
320 321 6.850555 TCTAGATTGACGATCATCATAGCAG 58.149 40.000 5.46 0.00 37.22 4.24
321 322 4.244066 AGATTGACGATCATCATAGCAGC 58.756 43.478 5.46 0.00 37.22 5.25
322 323 3.740631 TTGACGATCATCATAGCAGCT 57.259 42.857 0.00 0.00 0.00 4.24
323 324 3.740631 TGACGATCATCATAGCAGCTT 57.259 42.857 0.00 0.00 0.00 3.74
325 326 2.735663 GACGATCATCATAGCAGCTTGG 59.264 50.000 0.00 0.00 0.00 3.61
326 327 1.463831 CGATCATCATAGCAGCTTGGC 59.536 52.381 0.00 0.00 0.00 4.52
327 328 2.501261 GATCATCATAGCAGCTTGGCA 58.499 47.619 0.00 0.00 35.83 4.92
328 329 1.963172 TCATCATAGCAGCTTGGCAG 58.037 50.000 0.00 0.00 35.83 4.85
329 330 1.487558 TCATCATAGCAGCTTGGCAGA 59.512 47.619 0.00 0.00 35.83 4.26
331 332 2.723322 TCATAGCAGCTTGGCAGATT 57.277 45.000 0.00 0.00 35.83 2.40
334 335 4.525996 TCATAGCAGCTTGGCAGATTTTA 58.474 39.130 0.00 0.00 35.83 1.52
335 336 4.336433 TCATAGCAGCTTGGCAGATTTTAC 59.664 41.667 0.00 0.00 35.83 2.01
336 337 2.800250 AGCAGCTTGGCAGATTTTACT 58.200 42.857 0.00 0.00 35.83 2.24
337 338 2.751806 AGCAGCTTGGCAGATTTTACTC 59.248 45.455 0.00 0.00 35.83 2.59
338 339 2.751806 GCAGCTTGGCAGATTTTACTCT 59.248 45.455 0.00 0.00 0.00 3.24
341 342 4.639310 CAGCTTGGCAGATTTTACTCTGAT 59.361 41.667 5.31 0.00 44.48 2.90
342 343 4.880696 AGCTTGGCAGATTTTACTCTGATC 59.119 41.667 5.31 0.00 44.48 2.92
343 344 4.260538 GCTTGGCAGATTTTACTCTGATCG 60.261 45.833 5.31 0.00 44.48 3.69
346 347 5.111989 TGGCAGATTTTACTCTGATCGAAG 58.888 41.667 5.31 0.00 44.48 3.79
347 348 4.025313 GGCAGATTTTACTCTGATCGAAGC 60.025 45.833 5.31 0.00 44.48 3.86
348 349 4.025313 GCAGATTTTACTCTGATCGAAGCC 60.025 45.833 5.31 0.00 44.48 4.35
349 350 4.208047 CAGATTTTACTCTGATCGAAGCCG 59.792 45.833 0.00 0.00 44.48 5.52
350 351 1.922570 TTTACTCTGATCGAAGCCGC 58.077 50.000 0.00 0.00 35.37 6.53
352 353 0.100682 TACTCTGATCGAAGCCGCAC 59.899 55.000 0.00 0.00 35.37 5.34
355 356 0.744281 TCTGATCGAAGCCGCACATA 59.256 50.000 0.00 0.00 35.37 2.29
356 357 1.341209 TCTGATCGAAGCCGCACATAT 59.659 47.619 0.00 0.00 35.37 1.78
357 358 2.556622 TCTGATCGAAGCCGCACATATA 59.443 45.455 0.00 0.00 35.37 0.86
358 359 3.193479 TCTGATCGAAGCCGCACATATAT 59.807 43.478 0.00 0.00 35.37 0.86
359 360 4.398044 TCTGATCGAAGCCGCACATATATA 59.602 41.667 0.00 0.00 35.37 0.86
360 361 4.421058 TGATCGAAGCCGCACATATATAC 58.579 43.478 0.00 0.00 35.37 1.47
361 362 4.157840 TGATCGAAGCCGCACATATATACT 59.842 41.667 0.00 0.00 35.37 2.12
362 363 4.092771 TCGAAGCCGCACATATATACTC 57.907 45.455 0.00 0.00 35.37 2.59
363 364 3.756963 TCGAAGCCGCACATATATACTCT 59.243 43.478 0.00 0.00 35.37 3.24
364 365 4.939439 TCGAAGCCGCACATATATACTCTA 59.061 41.667 0.00 0.00 35.37 2.43
365 366 5.413523 TCGAAGCCGCACATATATACTCTAA 59.586 40.000 0.00 0.00 35.37 2.10
366 367 6.072342 TCGAAGCCGCACATATATACTCTAAA 60.072 38.462 0.00 0.00 35.37 1.85
368 369 7.115805 CGAAGCCGCACATATATACTCTAAAAA 59.884 37.037 0.00 0.00 0.00 1.94
386 387 2.806608 AAAGCACTCGTCCGTAAAGA 57.193 45.000 0.00 0.00 0.00 2.52
387 388 2.806608 AAGCACTCGTCCGTAAAGAA 57.193 45.000 0.00 0.00 0.00 2.52
388 389 2.806608 AGCACTCGTCCGTAAAGAAA 57.193 45.000 0.00 0.00 0.00 2.52
389 390 3.314541 AGCACTCGTCCGTAAAGAAAT 57.685 42.857 0.00 0.00 0.00 2.17
390 391 4.445452 AGCACTCGTCCGTAAAGAAATA 57.555 40.909 0.00 0.00 0.00 1.40
391 392 5.007385 AGCACTCGTCCGTAAAGAAATAT 57.993 39.130 0.00 0.00 0.00 1.28
392 393 6.140303 AGCACTCGTCCGTAAAGAAATATA 57.860 37.500 0.00 0.00 0.00 0.86
393 394 6.567050 AGCACTCGTCCGTAAAGAAATATAA 58.433 36.000 0.00 0.00 0.00 0.98
394 395 6.696148 AGCACTCGTCCGTAAAGAAATATAAG 59.304 38.462 0.00 0.00 0.00 1.73
395 396 6.694411 GCACTCGTCCGTAAAGAAATATAAGA 59.306 38.462 0.00 0.00 0.00 2.10
396 397 7.096558 GCACTCGTCCGTAAAGAAATATAAGAG 60.097 40.741 0.00 0.00 0.00 2.85
397 398 7.914346 CACTCGTCCGTAAAGAAATATAAGAGT 59.086 37.037 0.00 0.00 33.65 3.24
398 399 7.914346 ACTCGTCCGTAAAGAAATATAAGAGTG 59.086 37.037 0.00 0.00 32.41 3.51
399 400 7.765307 TCGTCCGTAAAGAAATATAAGAGTGT 58.235 34.615 0.00 0.00 0.00 3.55
400 401 8.246180 TCGTCCGTAAAGAAATATAAGAGTGTT 58.754 33.333 0.00 0.00 0.00 3.32
401 402 8.866956 CGTCCGTAAAGAAATATAAGAGTGTTT 58.133 33.333 0.00 0.00 0.00 2.83
433 434 9.563748 ACTAGTTTAGTGATCTACTAGTGATCC 57.436 37.037 22.02 16.44 42.57 3.36
434 435 9.562408 CTAGTTTAGTGATCTACTAGTGATCCA 57.438 37.037 22.02 13.23 42.57 3.41
435 436 8.824756 AGTTTAGTGATCTACTAGTGATCCAA 57.175 34.615 22.02 14.84 42.57 3.53
436 437 9.256228 AGTTTAGTGATCTACTAGTGATCCAAA 57.744 33.333 22.02 17.78 42.57 3.28
437 438 9.303537 GTTTAGTGATCTACTAGTGATCCAAAC 57.696 37.037 22.02 21.72 42.57 2.93
438 439 8.589701 TTAGTGATCTACTAGTGATCCAAACA 57.410 34.615 22.02 9.47 42.57 2.83
439 440 6.868622 AGTGATCTACTAGTGATCCAAACAC 58.131 40.000 22.02 16.65 39.48 3.32
441 442 6.975772 GTGATCTACTAGTGATCCAAACACTC 59.024 42.308 22.02 6.44 45.58 3.51
442 443 6.892456 TGATCTACTAGTGATCCAAACACTCT 59.108 38.462 22.02 0.00 45.58 3.24
443 444 7.397476 TGATCTACTAGTGATCCAAACACTCTT 59.603 37.037 22.02 0.00 45.58 2.85
444 445 8.824756 ATCTACTAGTGATCCAAACACTCTTA 57.175 34.615 5.39 0.00 45.58 2.10
445 446 8.824756 TCTACTAGTGATCCAAACACTCTTAT 57.175 34.615 5.39 0.00 45.58 1.73
446 447 9.916360 TCTACTAGTGATCCAAACACTCTTATA 57.084 33.333 5.39 0.00 45.58 0.98
450 451 9.482627 CTAGTGATCCAAACACTCTTATATTCC 57.517 37.037 0.00 0.00 45.58 3.01
451 452 8.095452 AGTGATCCAAACACTCTTATATTCCT 57.905 34.615 0.00 0.00 43.84 3.36
452 453 8.552296 AGTGATCCAAACACTCTTATATTCCTT 58.448 33.333 0.00 0.00 43.84 3.36
453 454 9.832445 GTGATCCAAACACTCTTATATTCCTTA 57.168 33.333 0.00 0.00 35.66 2.69
454 455 9.832445 TGATCCAAACACTCTTATATTCCTTAC 57.168 33.333 0.00 0.00 0.00 2.34
455 456 9.832445 GATCCAAACACTCTTATATTCCTTACA 57.168 33.333 0.00 0.00 0.00 2.41
456 457 9.838339 ATCCAAACACTCTTATATTCCTTACAG 57.162 33.333 0.00 0.00 0.00 2.74
457 458 9.042450 TCCAAACACTCTTATATTCCTTACAGA 57.958 33.333 0.00 0.00 0.00 3.41
458 459 9.319143 CCAAACACTCTTATATTCCTTACAGAG 57.681 37.037 0.00 0.00 35.00 3.35
460 461 7.604657 ACACTCTTATATTCCTTACAGAGGG 57.395 40.000 0.00 0.00 46.31 4.30
461 462 7.363031 ACACTCTTATATTCCTTACAGAGGGA 58.637 38.462 3.29 0.00 46.31 4.20
462 463 7.507616 ACACTCTTATATTCCTTACAGAGGGAG 59.492 40.741 3.29 0.00 46.31 4.30
463 464 7.507616 CACTCTTATATTCCTTACAGAGGGAGT 59.492 40.741 0.00 0.00 46.31 3.85
464 465 8.734763 ACTCTTATATTCCTTACAGAGGGAGTA 58.265 37.037 0.00 0.00 46.31 2.59
465 466 9.589461 CTCTTATATTCCTTACAGAGGGAGTAA 57.411 37.037 0.00 0.00 46.31 2.24
466 467 9.947189 TCTTATATTCCTTACAGAGGGAGTAAA 57.053 33.333 0.00 0.00 46.31 2.01
468 469 9.947189 TTATATTCCTTACAGAGGGAGTAAAGA 57.053 33.333 0.00 0.00 46.31 2.52
469 470 8.855804 ATATTCCTTACAGAGGGAGTAAAGAA 57.144 34.615 0.00 0.00 46.31 2.52
470 471 7.569599 ATTCCTTACAGAGGGAGTAAAGAAA 57.430 36.000 0.00 0.00 46.31 2.52
471 472 7.383156 TTCCTTACAGAGGGAGTAAAGAAAA 57.617 36.000 0.00 0.00 46.31 2.29
472 473 7.005709 TCCTTACAGAGGGAGTAAAGAAAAG 57.994 40.000 0.00 0.00 46.31 2.27
473 474 6.013639 TCCTTACAGAGGGAGTAAAGAAAAGG 60.014 42.308 0.00 0.00 46.31 3.11
474 475 6.013639 CCTTACAGAGGGAGTAAAGAAAAGGA 60.014 42.308 0.00 0.00 42.26 3.36
475 476 5.906772 ACAGAGGGAGTAAAGAAAAGGAA 57.093 39.130 0.00 0.00 0.00 3.36
476 477 6.262056 ACAGAGGGAGTAAAGAAAAGGAAA 57.738 37.500 0.00 0.00 0.00 3.13
477 478 6.299922 ACAGAGGGAGTAAAGAAAAGGAAAG 58.700 40.000 0.00 0.00 0.00 2.62
478 479 5.707764 CAGAGGGAGTAAAGAAAAGGAAAGG 59.292 44.000 0.00 0.00 0.00 3.11
479 480 5.611408 AGAGGGAGTAAAGAAAAGGAAAGGA 59.389 40.000 0.00 0.00 0.00 3.36
480 481 6.102762 AGAGGGAGTAAAGAAAAGGAAAGGAA 59.897 38.462 0.00 0.00 0.00 3.36
481 482 6.679542 AGGGAGTAAAGAAAAGGAAAGGAAA 58.320 36.000 0.00 0.00 0.00 3.13
482 483 6.778069 AGGGAGTAAAGAAAAGGAAAGGAAAG 59.222 38.462 0.00 0.00 0.00 2.62
485 486 8.692710 GGAGTAAAGAAAAGGAAAGGAAAGAAA 58.307 33.333 0.00 0.00 0.00 2.52
534 537 5.510179 GCCTACGGTTTACAGGATGCTAATA 60.510 44.000 0.00 0.00 42.53 0.98
544 547 5.133221 ACAGGATGCTAATACCACATTTCC 58.867 41.667 0.00 0.00 42.53 3.13
605 612 1.017177 TCGTCGGATTTTGCGAAGGG 61.017 55.000 4.80 0.00 42.99 3.95
655 662 6.374417 ACTCTTAACTAATTGCTCTTGGGA 57.626 37.500 0.00 0.00 0.00 4.37
660 667 0.988832 TAATTGCTCTTGGGACGGGT 59.011 50.000 0.00 0.00 0.00 5.28
722 731 3.103447 TCTGCAGCTCATTTATCTCGG 57.897 47.619 9.47 0.00 0.00 4.63
751 772 4.520846 GCTTGTTGCGATCGCCCG 62.521 66.667 35.12 19.47 41.09 6.13
778 799 3.611674 GCCACCACCAAAACCCCG 61.612 66.667 0.00 0.00 0.00 5.73
798 819 4.034048 CCCGATTTTGATTTACTCACCTCG 59.966 45.833 0.00 0.00 32.17 4.63
812 833 3.917760 CTCGCCCACCTCCGATCC 61.918 72.222 0.00 0.00 32.52 3.36
818 839 3.550431 CACCTCCGATCCGCCCAT 61.550 66.667 0.00 0.00 0.00 4.00
819 840 3.234730 ACCTCCGATCCGCCCATC 61.235 66.667 0.00 0.00 0.00 3.51
820 841 3.233980 CCTCCGATCCGCCCATCA 61.234 66.667 0.00 0.00 0.00 3.07
822 843 2.443952 TCCGATCCGCCCATCACT 60.444 61.111 0.00 0.00 0.00 3.41
823 844 2.280389 CCGATCCGCCCATCACTG 60.280 66.667 0.00 0.00 0.00 3.66
870 902 4.691359 AGACGCGGGTGGGTAGGT 62.691 66.667 10.96 0.00 41.99 3.08
1179 1300 4.489771 CCCCGCGGCAAGGAATCT 62.490 66.667 22.85 0.00 0.00 2.40
1319 1446 4.717629 CCTCGACAACAGCGGCGA 62.718 66.667 12.98 0.00 0.00 5.54
1410 1546 4.227134 CTCGCGGCCTACCTGCAT 62.227 66.667 6.13 0.00 35.89 3.96
1980 3313 2.605823 GCTCTACGCGCTCATCTACAAT 60.606 50.000 5.73 0.00 0.00 2.71
2775 4111 7.773224 CCAATATACAACCTTCCTGACACAATA 59.227 37.037 0.00 0.00 0.00 1.90
3074 4423 4.197559 AGCTATCAGGAGAGGTCAAGAT 57.802 45.455 0.00 0.00 0.00 2.40
3086 4435 2.293399 AGGTCAAGATTTGCGGAACAAC 59.707 45.455 0.00 0.00 38.23 3.32
3144 4495 5.048083 TGGCAAAATTCAGGACAACATACTC 60.048 40.000 0.00 0.00 0.00 2.59
3616 5014 6.458342 GCCATAAATTGTTCGGTTCTCCTTAG 60.458 42.308 0.00 0.00 0.00 2.18
4297 5726 2.172293 GCATCTCCTCAGATTTCCTGGT 59.828 50.000 0.00 0.00 43.12 4.00
4786 7073 3.370978 CGACCGAAATTCTACAATGCTGT 59.629 43.478 0.00 0.00 39.75 4.40
5164 7550 2.301870 ACGTCAGAAGATAAGTTGCCCA 59.698 45.455 0.00 0.00 0.00 5.36
5165 7551 2.932614 CGTCAGAAGATAAGTTGCCCAG 59.067 50.000 0.00 0.00 0.00 4.45
5226 7613 5.183969 GTCCATGTAAGTACCCTTTCCTTC 58.816 45.833 0.00 0.00 31.89 3.46
5241 7629 4.635699 TTCCTTCTCCCTCCTGTTTAAC 57.364 45.455 0.00 0.00 0.00 2.01
5282 7670 2.118683 CCGTGTTGTTGTGCAGAAATG 58.881 47.619 0.00 0.00 0.00 2.32
5333 7722 6.776887 ATTAGAAATCCAGTCTGATGGGAT 57.223 37.500 0.00 7.11 43.12 3.85
5372 7789 9.859427 TTCAGCTTTTTATCAAATGAGTAATGG 57.141 29.630 0.00 0.00 0.00 3.16
5568 8072 2.159282 CCGTATTGTCGAGCCTACTGTT 60.159 50.000 0.00 0.00 0.00 3.16
5804 8309 2.297597 AGTCGAGAACCTCTTGGAAGTG 59.702 50.000 0.00 0.00 37.04 3.16
5817 8322 1.003580 TGGAAGTGGCAGTCTGAATCC 59.996 52.381 3.32 0.00 0.00 3.01
5822 8327 1.200948 GTGGCAGTCTGAATCCTTTGC 59.799 52.381 3.32 0.00 0.00 3.68
5823 8328 1.074405 TGGCAGTCTGAATCCTTTGCT 59.926 47.619 3.32 0.00 0.00 3.91
5824 8329 2.165998 GGCAGTCTGAATCCTTTGCTT 58.834 47.619 3.32 0.00 0.00 3.91
5825 8330 2.094854 GGCAGTCTGAATCCTTTGCTTG 60.095 50.000 3.32 0.00 0.00 4.01
5859 8364 2.237143 CCTTGGATAACTGTCAGCTGGA 59.763 50.000 15.13 0.00 0.00 3.86
5947 8452 8.445275 TTTTTAGTCATGCAGTTGAAAGTCTA 57.555 30.769 0.00 0.00 0.00 2.59
5949 8454 8.621532 TTTAGTCATGCAGTTGAAAGTCTAAT 57.378 30.769 0.00 0.00 0.00 1.73
5953 8458 7.332926 AGTCATGCAGTTGAAAGTCTAATACTG 59.667 37.037 0.00 0.00 38.88 2.74
5956 8548 7.884816 TGCAGTTGAAAGTCTAATACTGTAC 57.115 36.000 0.00 0.00 38.88 2.90
5958 8550 7.598869 TGCAGTTGAAAGTCTAATACTGTACTG 59.401 37.037 0.00 0.00 38.88 2.74
5966 8558 9.502091 AAAGTCTAATACTGTACTGAATTTGCA 57.498 29.630 6.77 0.00 38.88 4.08
5967 8559 9.672673 AAGTCTAATACTGTACTGAATTTGCAT 57.327 29.630 6.77 0.00 38.88 3.96
5977 8570 5.536554 ACTGAATTTGCATACTCTTCACG 57.463 39.130 0.00 0.00 0.00 4.35
5978 8571 4.997395 ACTGAATTTGCATACTCTTCACGT 59.003 37.500 0.00 0.00 0.00 4.49
5979 8572 5.470098 ACTGAATTTGCATACTCTTCACGTT 59.530 36.000 0.00 0.00 0.00 3.99
5994 8626 1.944024 CACGTTTTTCCCAGTACTGCA 59.056 47.619 17.86 2.90 0.00 4.41
5995 8627 2.552315 CACGTTTTTCCCAGTACTGCAT 59.448 45.455 17.86 0.00 0.00 3.96
5996 8628 2.552315 ACGTTTTTCCCAGTACTGCATG 59.448 45.455 17.86 8.03 0.00 4.06
5998 8630 3.004315 CGTTTTTCCCAGTACTGCATGTT 59.996 43.478 17.86 0.00 0.00 2.71
6003 8638 3.674997 TCCCAGTACTGCATGTTCTTTC 58.325 45.455 17.86 0.00 0.00 2.62
6005 8640 3.325870 CCAGTACTGCATGTTCTTTCGA 58.674 45.455 17.86 0.00 0.00 3.71
6015 8651 5.514914 TGCATGTTCTTTCGAAAACTGAAAC 59.485 36.000 12.41 11.14 32.29 2.78
6018 8654 7.201435 GCATGTTCTTTCGAAAACTGAAACTTT 60.201 33.333 12.41 2.45 32.29 2.66
6019 8655 7.790861 TGTTCTTTCGAAAACTGAAACTTTC 57.209 32.000 12.41 1.50 32.29 2.62
6023 8659 8.259049 TCTTTCGAAAACTGAAACTTTCTGTA 57.741 30.769 12.41 0.00 40.37 2.74
6025 8661 9.337091 CTTTCGAAAACTGAAACTTTCTGTAAA 57.663 29.630 12.41 9.16 40.37 2.01
6108 8744 3.688673 GCCTTGGAAGAGTGATTCTGAAG 59.311 47.826 0.00 0.00 35.91 3.02
6162 8798 1.298413 CTCAGTGGATACCGCGACG 60.298 63.158 8.23 0.00 39.30 5.12
6189 8825 0.874390 TGATCCAGAAAACACTGCGC 59.126 50.000 0.00 0.00 36.67 6.09
6201 8837 0.387878 CACTGCGCGAGAACTTCTCT 60.388 55.000 12.10 0.00 41.26 3.10
6349 8993 5.189736 TCTTCTACTAATCCCATGTGCTTGT 59.810 40.000 0.00 0.00 0.00 3.16
6585 9245 4.638421 TGATGCCGAAAAATTACTGGTAGG 59.362 41.667 0.00 0.00 0.00 3.18
6604 9269 2.072298 GGTGTGATGTGAAGTGCTCTC 58.928 52.381 0.00 0.00 0.00 3.20
6605 9270 1.723542 GTGTGATGTGAAGTGCTCTCG 59.276 52.381 0.00 0.00 0.00 4.04
6606 9271 1.337167 TGTGATGTGAAGTGCTCTCGG 60.337 52.381 0.00 0.00 0.00 4.63
6607 9272 1.067565 GTGATGTGAAGTGCTCTCGGA 60.068 52.381 0.00 0.00 0.00 4.55
6608 9273 1.827344 TGATGTGAAGTGCTCTCGGAT 59.173 47.619 0.00 0.00 0.00 4.18
6740 9407 8.248945 TGAAGAAAGTAGTTCGTTAAGGATAGG 58.751 37.037 0.00 0.00 41.52 2.57
6761 9433 1.645710 AGACCTGAACCCTGGTAGTG 58.354 55.000 0.00 0.00 43.54 2.74
6768 9440 1.125711 AACCCTGGTAGTGGTCGCTT 61.126 55.000 0.00 0.00 32.40 4.68
6811 9483 2.209273 CCGAAAAAGTTTTGGGGCTTG 58.791 47.619 0.61 0.00 40.87 4.01
6830 9502 6.770785 GGGCTTGGTAATTTGATGATGTACTA 59.229 38.462 0.00 0.00 0.00 1.82
6860 9538 4.583073 ACCCGGATAAATAAATGAAGTGGC 59.417 41.667 0.73 0.00 0.00 5.01
6901 9579 3.403558 GGTCCCCTCCCTGACTGC 61.404 72.222 0.00 0.00 0.00 4.40
6963 9641 0.592637 TGCCAAGCATGAACAGAACG 59.407 50.000 0.00 0.00 31.71 3.95
7004 9683 7.666623 TGTAAATTCTGTCATTCTTTTTCCCC 58.333 34.615 0.00 0.00 0.00 4.81
7011 9690 3.057245 GTCATTCTTTTTCCCCTCTGCAC 60.057 47.826 0.00 0.00 0.00 4.57
7041 9720 7.648142 CAAGTCAATTTGCTCTACTAAAACCA 58.352 34.615 0.00 0.00 0.00 3.67
7042 9721 8.299570 CAAGTCAATTTGCTCTACTAAAACCAT 58.700 33.333 0.00 0.00 0.00 3.55
7044 9723 8.299570 AGTCAATTTGCTCTACTAAAACCATTG 58.700 33.333 0.00 0.00 0.00 2.82
7045 9724 7.062255 GTCAATTTGCTCTACTAAAACCATTGC 59.938 37.037 0.00 0.00 0.00 3.56
7047 9726 4.027674 TGCTCTACTAAAACCATTGCCA 57.972 40.909 0.00 0.00 0.00 4.92
7048 9727 3.756434 TGCTCTACTAAAACCATTGCCAC 59.244 43.478 0.00 0.00 0.00 5.01
7049 9728 3.756434 GCTCTACTAAAACCATTGCCACA 59.244 43.478 0.00 0.00 0.00 4.17
7051 9730 5.235850 TCTACTAAAACCATTGCCACAGA 57.764 39.130 0.00 0.00 0.00 3.41
7053 9732 6.245408 TCTACTAAAACCATTGCCACAGAAT 58.755 36.000 0.00 0.00 0.00 2.40
7054 9733 7.398829 TCTACTAAAACCATTGCCACAGAATA 58.601 34.615 0.00 0.00 0.00 1.75
7056 9735 6.866480 ACTAAAACCATTGCCACAGAATATG 58.134 36.000 0.00 0.00 0.00 1.78
7057 9736 5.743636 AAAACCATTGCCACAGAATATGT 57.256 34.783 0.00 0.00 45.43 2.29
7059 9738 6.849085 AAACCATTGCCACAGAATATGTTA 57.151 33.333 0.00 0.00 41.41 2.41
7060 9739 7.422465 AAACCATTGCCACAGAATATGTTAT 57.578 32.000 0.00 0.00 41.41 1.89
7061 9740 6.395426 ACCATTGCCACAGAATATGTTATG 57.605 37.500 0.00 0.00 41.41 1.90
7062 9741 5.302568 ACCATTGCCACAGAATATGTTATGG 59.697 40.000 1.81 0.00 41.41 2.74
7064 9743 3.221771 TGCCACAGAATATGTTATGGCC 58.778 45.455 16.91 0.00 44.24 5.36
7065 9744 3.117550 TGCCACAGAATATGTTATGGCCT 60.118 43.478 16.91 0.00 44.24 5.19
7067 9746 4.717877 CCACAGAATATGTTATGGCCTGA 58.282 43.478 3.32 0.00 41.41 3.86
7068 9747 5.132502 CCACAGAATATGTTATGGCCTGAA 58.867 41.667 3.32 0.00 41.41 3.02
7069 9748 5.771666 CCACAGAATATGTTATGGCCTGAAT 59.228 40.000 3.32 0.00 41.41 2.57
7070 9749 6.942005 CCACAGAATATGTTATGGCCTGAATA 59.058 38.462 3.32 0.00 41.41 1.75
7071 9750 7.448161 CCACAGAATATGTTATGGCCTGAATAA 59.552 37.037 3.32 0.00 41.41 1.40
7072 9751 8.849168 CACAGAATATGTTATGGCCTGAATAAA 58.151 33.333 3.32 0.00 41.41 1.40
7073 9752 9.420118 ACAGAATATGTTATGGCCTGAATAAAA 57.580 29.630 3.32 0.00 39.96 1.52
7097 9776 5.643777 ACTACATCAGGCAATTGTAAGTCAC 59.356 40.000 7.40 0.00 0.00 3.67
7098 9782 4.397420 ACATCAGGCAATTGTAAGTCACA 58.603 39.130 7.40 0.00 34.51 3.58
7127 9811 3.198863 CAGCTGTTCTGAATTCAGTGC 57.801 47.619 29.80 26.23 45.72 4.40
7176 9860 1.528586 CAGGACAGCTGTTCTTTGACG 59.471 52.381 25.72 9.98 29.58 4.35
7185 9869 2.899976 TGTTCTTTGACGAAGCACAGA 58.100 42.857 4.02 0.00 36.74 3.41
7190 9874 0.319900 TTGACGAAGCACAGAGAGCC 60.320 55.000 0.00 0.00 0.00 4.70
7215 9899 1.494721 TGGCTGACCTTCTCACCTTTT 59.505 47.619 0.00 0.00 36.63 2.27
7243 9940 6.017933 GTCTACGATGAAAGTTCAGCAAATG 58.982 40.000 9.71 0.00 43.38 2.32
7247 9944 6.546395 ACGATGAAAGTTCAGCAAATGATAC 58.454 36.000 9.71 0.00 43.38 2.24
7251 9948 9.362539 GATGAAAGTTCAGCAAATGATACAAAT 57.637 29.630 4.48 0.00 42.78 2.32
7252 9949 9.715121 ATGAAAGTTCAGCAAATGATACAAATT 57.285 25.926 0.00 0.00 41.08 1.82
7255 9952 8.976986 AAGTTCAGCAAATGATACAAATTCTC 57.023 30.769 0.00 0.00 37.89 2.87
7259 9956 8.114331 TCAGCAAATGATACAAATTCTCTTGT 57.886 30.769 0.00 0.00 36.86 3.16
7260 9957 8.579006 TCAGCAAATGATACAAATTCTCTTGTT 58.421 29.630 0.00 0.00 35.53 2.83
7263 9960 9.195411 GCAAATGATACAAATTCTCTTGTTTCA 57.805 29.630 10.57 10.57 45.24 2.69
7269 9966 9.552114 GATACAAATTCTCTTGTTTCACATCAG 57.448 33.333 0.00 0.00 40.08 2.90
7276 9973 4.582869 TCTTGTTTCACATCAGCTGCTAT 58.417 39.130 9.47 0.00 0.00 2.97
7281 9978 1.143305 CACATCAGCTGCTATACGCC 58.857 55.000 9.47 0.00 38.05 5.68
7284 9981 0.039074 ATCAGCTGCTATACGCCGAC 60.039 55.000 9.47 0.00 38.05 4.79
7285 9982 1.101635 TCAGCTGCTATACGCCGACT 61.102 55.000 9.47 0.00 38.05 4.18
7287 9984 0.820074 AGCTGCTATACGCCGACTCT 60.820 55.000 0.00 0.00 38.05 3.24
7290 9987 2.414806 CTGCTATACGCCGACTCTCTA 58.585 52.381 0.00 0.00 38.05 2.43
7293 9990 2.412770 GCTATACGCCGACTCTCTAGAC 59.587 54.545 0.00 0.00 0.00 2.59
7298 9995 4.220413 CGACTCTCTAGACGGCCA 57.780 61.111 2.24 0.00 37.27 5.36
7302 9999 1.365633 CTCTCTAGACGGCCATGCC 59.634 63.158 2.24 0.00 46.75 4.40
7318 10015 1.898154 GCCTACCTCGGCTTCAGAA 59.102 57.895 0.00 0.00 46.63 3.02
7319 10016 0.179097 GCCTACCTCGGCTTCAGAAG 60.179 60.000 5.72 5.72 46.63 2.85
7320 10017 0.461961 CCTACCTCGGCTTCAGAAGG 59.538 60.000 12.30 0.00 0.00 3.46
7321 10018 1.475403 CTACCTCGGCTTCAGAAGGA 58.525 55.000 12.30 0.96 0.00 3.36
7322 10019 1.407258 CTACCTCGGCTTCAGAAGGAG 59.593 57.143 12.30 10.23 0.00 3.69
7327 10024 3.133003 CCTCGGCTTCAGAAGGAGATAAA 59.867 47.826 12.30 0.00 0.00 1.40
7328 10025 4.202305 CCTCGGCTTCAGAAGGAGATAAAT 60.202 45.833 12.30 0.00 0.00 1.40
7329 10026 5.359194 TCGGCTTCAGAAGGAGATAAATT 57.641 39.130 12.30 0.00 0.00 1.82
7330 10027 5.745227 TCGGCTTCAGAAGGAGATAAATTT 58.255 37.500 12.30 0.00 0.00 1.82
7333 10030 6.203723 CGGCTTCAGAAGGAGATAAATTTAGG 59.796 42.308 12.30 0.00 0.00 2.69
7335 10032 8.211629 GGCTTCAGAAGGAGATAAATTTAGGTA 58.788 37.037 12.30 0.00 0.00 3.08
7342 10046 7.408013 AGGAGATAAATTTAGGTAGGCCATT 57.592 36.000 5.01 0.00 37.19 3.16
7347 10051 7.671398 AGATAAATTTAGGTAGGCCATTGGATG 59.329 37.037 5.01 0.00 37.19 3.51
7359 10063 4.427312 GCCATTGGATGTGAACTGAAATC 58.573 43.478 6.95 0.00 0.00 2.17
7372 10076 7.068593 TGTGAACTGAAATCCATCTTTTGAAGT 59.931 33.333 0.00 0.00 0.00 3.01
7378 10082 9.538508 CTGAAATCCATCTTTTGAAGTTCTTTT 57.461 29.630 4.17 0.00 0.00 2.27
7383 10096 6.017109 TCCATCTTTTGAAGTTCTTTTCCTCG 60.017 38.462 4.17 0.00 0.00 4.63
7388 10101 2.289444 TGAAGTTCTTTTCCTCGGCGAT 60.289 45.455 11.27 0.00 0.00 4.58
7392 10105 0.175760 TCTTTTCCTCGGCGATCAGG 59.824 55.000 11.27 8.95 0.00 3.86
7397 10110 1.079127 CCTCGGCGATCAGGTTTGT 60.079 57.895 11.27 0.00 0.00 2.83
7403 10116 2.359900 GGCGATCAGGTTTGTGAAGAT 58.640 47.619 0.00 0.00 0.00 2.40
7416 10129 4.274602 TGTGAAGATGCCAAATTGCAAT 57.725 36.364 5.99 5.99 45.84 3.56
7418 10131 3.004171 TGAAGATGCCAAATTGCAATGC 58.996 40.909 13.82 12.81 45.84 3.56
7436 10154 4.741321 ATGCTGGAGAAGAGAAGAGAAG 57.259 45.455 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.995446 ACTCCATCTCAGGGTTCTTTATTC 58.005 41.667 0.00 0.00 0.00 1.75
3 4 5.590818 ACTACTCCATCTCAGGGTTCTTTA 58.409 41.667 0.00 0.00 0.00 1.85
6 7 3.767309 ACTACTCCATCTCAGGGTTCT 57.233 47.619 0.00 0.00 0.00 3.01
7 8 5.934402 TTTACTACTCCATCTCAGGGTTC 57.066 43.478 0.00 0.00 0.00 3.62
9 10 6.893020 AAATTTACTACTCCATCTCAGGGT 57.107 37.500 0.00 0.00 0.00 4.34
11 12 8.792830 TTGAAAATTTACTACTCCATCTCAGG 57.207 34.615 0.00 0.00 0.00 3.86
36 37 7.139896 ACAATTTTTCCGCTTGTTTCTTTTT 57.860 28.000 0.00 0.00 29.06 1.94
37 38 6.735678 ACAATTTTTCCGCTTGTTTCTTTT 57.264 29.167 0.00 0.00 29.06 2.27
39 40 5.641636 ACAACAATTTTTCCGCTTGTTTCTT 59.358 32.000 0.00 0.00 40.19 2.52
43 44 5.656480 ACTACAACAATTTTTCCGCTTGTT 58.344 33.333 0.00 0.00 42.24 2.83
44 45 5.257082 ACTACAACAATTTTTCCGCTTGT 57.743 34.783 0.00 0.00 34.71 3.16
45 46 5.174943 GGAACTACAACAATTTTTCCGCTTG 59.825 40.000 0.00 0.00 0.00 4.01
46 47 5.163499 TGGAACTACAACAATTTTTCCGCTT 60.163 36.000 0.00 0.00 36.14 4.68
47 48 4.339814 TGGAACTACAACAATTTTTCCGCT 59.660 37.500 0.00 0.00 36.14 5.52
48 49 4.612943 TGGAACTACAACAATTTTTCCGC 58.387 39.130 0.00 0.00 36.14 5.54
49 50 7.707774 AAATGGAACTACAACAATTTTTCCG 57.292 32.000 0.00 0.00 36.14 4.30
50 51 9.535878 TGTAAATGGAACTACAACAATTTTTCC 57.464 29.630 0.00 0.00 34.30 3.13
54 55 9.965824 CTTCTGTAAATGGAACTACAACAATTT 57.034 29.630 0.00 0.00 0.00 1.82
55 56 9.349713 TCTTCTGTAAATGGAACTACAACAATT 57.650 29.630 0.00 0.00 0.00 2.32
56 57 8.918202 TCTTCTGTAAATGGAACTACAACAAT 57.082 30.769 0.00 0.00 0.00 2.71
57 58 7.444183 CCTCTTCTGTAAATGGAACTACAACAA 59.556 37.037 0.00 0.00 0.00 2.83
58 59 6.934645 CCTCTTCTGTAAATGGAACTACAACA 59.065 38.462 0.00 0.00 0.00 3.33
59 60 6.128254 GCCTCTTCTGTAAATGGAACTACAAC 60.128 42.308 0.00 0.00 0.00 3.32
60 61 5.938125 GCCTCTTCTGTAAATGGAACTACAA 59.062 40.000 0.00 0.00 0.00 2.41
61 62 5.012664 TGCCTCTTCTGTAAATGGAACTACA 59.987 40.000 0.00 0.00 0.00 2.74
62 63 5.351740 GTGCCTCTTCTGTAAATGGAACTAC 59.648 44.000 0.00 0.00 0.00 2.73
63 64 5.012664 TGTGCCTCTTCTGTAAATGGAACTA 59.987 40.000 0.00 0.00 0.00 2.24
64 65 4.202461 TGTGCCTCTTCTGTAAATGGAACT 60.202 41.667 0.00 0.00 0.00 3.01
65 66 4.072131 TGTGCCTCTTCTGTAAATGGAAC 58.928 43.478 0.00 0.00 0.00 3.62
66 67 4.365514 TGTGCCTCTTCTGTAAATGGAA 57.634 40.909 0.00 0.00 0.00 3.53
67 68 4.365514 TTGTGCCTCTTCTGTAAATGGA 57.634 40.909 0.00 0.00 0.00 3.41
68 69 4.613622 CGTTTGTGCCTCTTCTGTAAATGG 60.614 45.833 0.00 0.00 0.00 3.16
69 70 4.213270 TCGTTTGTGCCTCTTCTGTAAATG 59.787 41.667 0.00 0.00 0.00 2.32
70 71 4.213482 GTCGTTTGTGCCTCTTCTGTAAAT 59.787 41.667 0.00 0.00 0.00 1.40
71 72 3.558418 GTCGTTTGTGCCTCTTCTGTAAA 59.442 43.478 0.00 0.00 0.00 2.01
72 73 3.128349 GTCGTTTGTGCCTCTTCTGTAA 58.872 45.455 0.00 0.00 0.00 2.41
73 74 2.101750 TGTCGTTTGTGCCTCTTCTGTA 59.898 45.455 0.00 0.00 0.00 2.74
74 75 1.134521 TGTCGTTTGTGCCTCTTCTGT 60.135 47.619 0.00 0.00 0.00 3.41
75 76 1.581934 TGTCGTTTGTGCCTCTTCTG 58.418 50.000 0.00 0.00 0.00 3.02
81 82 1.873591 CTAGCTTTGTCGTTTGTGCCT 59.126 47.619 0.00 0.00 0.00 4.75
82 83 1.069227 CCTAGCTTTGTCGTTTGTGCC 60.069 52.381 0.00 0.00 0.00 5.01
84 85 1.601903 TGCCTAGCTTTGTCGTTTGTG 59.398 47.619 0.00 0.00 0.00 3.33
89 90 4.285851 GCTGCCTAGCTTTGTCGT 57.714 55.556 0.00 0.00 46.57 4.34
110 111 1.835531 TGGAAACCCTCTCCCGATAAC 59.164 52.381 0.00 0.00 31.32 1.89
123 124 1.450025 GGGTTCAGACGATGGAAACC 58.550 55.000 6.15 6.15 43.09 3.27
129 130 0.740868 ACATGCGGGTTCAGACGATG 60.741 55.000 0.00 0.00 0.00 3.84
136 137 2.983030 GCACCACATGCGGGTTCA 60.983 61.111 4.47 0.00 46.55 3.18
166 167 4.773674 TGATCGGGTAAAAGGAAGTCAGTA 59.226 41.667 0.00 0.00 0.00 2.74
169 170 4.041198 ACTTGATCGGGTAAAAGGAAGTCA 59.959 41.667 0.00 0.00 0.00 3.41
181 182 2.028385 GGTGACTTGTACTTGATCGGGT 60.028 50.000 0.00 0.00 0.00 5.28
183 184 3.313012 TGGTGACTTGTACTTGATCGG 57.687 47.619 0.00 0.00 0.00 4.18
214 215 5.600696 CCTTATTGGTGACTTGCACTTTTT 58.399 37.500 0.00 0.00 46.86 1.94
216 217 4.853924 CCTTATTGGTGACTTGCACTTT 57.146 40.909 0.00 0.00 46.86 2.66
229 230 9.106070 GTTATAAGTCCAGTAACACCTTATTGG 57.894 37.037 0.00 0.00 39.87 3.16
230 231 9.886132 AGTTATAAGTCCAGTAACACCTTATTG 57.114 33.333 0.00 0.00 32.30 1.90
233 234 9.092338 TCAAGTTATAAGTCCAGTAACACCTTA 57.908 33.333 0.00 0.00 32.22 2.69
242 243 8.990163 TTCCTTTTTCAAGTTATAAGTCCAGT 57.010 30.769 0.00 0.00 0.00 4.00
252 253 5.600484 TCCTGGCATTTCCTTTTTCAAGTTA 59.400 36.000 0.00 0.00 35.26 2.24
253 254 4.408596 TCCTGGCATTTCCTTTTTCAAGTT 59.591 37.500 0.00 0.00 35.26 2.66
254 255 3.966665 TCCTGGCATTTCCTTTTTCAAGT 59.033 39.130 0.00 0.00 35.26 3.16
255 256 4.605640 TCCTGGCATTTCCTTTTTCAAG 57.394 40.909 0.00 0.00 35.26 3.02
256 257 4.803588 GCATCCTGGCATTTCCTTTTTCAA 60.804 41.667 0.00 0.00 35.26 2.69
257 258 3.306919 GCATCCTGGCATTTCCTTTTTCA 60.307 43.478 0.00 0.00 35.26 2.69
258 259 3.055602 AGCATCCTGGCATTTCCTTTTTC 60.056 43.478 0.00 0.00 35.83 2.29
259 260 2.908351 AGCATCCTGGCATTTCCTTTTT 59.092 40.909 0.00 0.00 35.83 1.94
265 266 1.134907 CCAACAGCATCCTGGCATTTC 60.135 52.381 0.00 0.00 43.53 2.17
267 268 0.040058 TCCAACAGCATCCTGGCATT 59.960 50.000 0.00 0.00 43.53 3.56
272 273 6.294473 AGATAATAAGTCCAACAGCATCCTG 58.706 40.000 0.00 0.00 44.80 3.86
278 279 9.202273 CAATCTAGAGATAATAAGTCCAACAGC 57.798 37.037 0.00 0.00 33.73 4.40
282 283 9.350951 TCGTCAATCTAGAGATAATAAGTCCAA 57.649 33.333 0.00 0.00 33.73 3.53
283 284 8.919777 TCGTCAATCTAGAGATAATAAGTCCA 57.080 34.615 0.00 0.00 33.73 4.02
299 300 4.021280 AGCTGCTATGATGATCGTCAATCT 60.021 41.667 21.10 8.11 35.24 2.40
301 302 4.268797 AGCTGCTATGATGATCGTCAAT 57.731 40.909 21.10 12.11 0.00 2.57
316 317 2.751806 GAGTAAAATCTGCCAAGCTGCT 59.248 45.455 0.00 0.00 0.00 4.24
317 318 2.751806 AGAGTAAAATCTGCCAAGCTGC 59.248 45.455 0.00 0.00 0.00 5.25
318 319 4.005650 TCAGAGTAAAATCTGCCAAGCTG 58.994 43.478 2.62 0.00 45.25 4.24
319 320 4.292186 TCAGAGTAAAATCTGCCAAGCT 57.708 40.909 2.62 0.00 45.25 3.74
320 321 4.260538 CGATCAGAGTAAAATCTGCCAAGC 60.261 45.833 2.62 0.00 45.25 4.01
321 322 5.111989 TCGATCAGAGTAAAATCTGCCAAG 58.888 41.667 2.62 0.00 45.25 3.61
322 323 5.084818 TCGATCAGAGTAAAATCTGCCAA 57.915 39.130 2.62 0.00 45.25 4.52
323 324 4.736126 TCGATCAGAGTAAAATCTGCCA 57.264 40.909 2.62 0.00 45.25 4.92
325 326 4.025313 GGCTTCGATCAGAGTAAAATCTGC 60.025 45.833 2.62 0.00 45.25 4.26
326 327 4.208047 CGGCTTCGATCAGAGTAAAATCTG 59.792 45.833 1.06 1.06 41.16 2.90
327 328 4.363999 CGGCTTCGATCAGAGTAAAATCT 58.636 43.478 0.00 0.00 35.61 2.40
328 329 3.060205 GCGGCTTCGATCAGAGTAAAATC 60.060 47.826 0.00 0.00 35.61 2.17
329 330 2.866762 GCGGCTTCGATCAGAGTAAAAT 59.133 45.455 0.00 0.00 35.61 1.82
331 332 1.203758 TGCGGCTTCGATCAGAGTAAA 59.796 47.619 0.00 0.00 35.61 2.01
334 335 1.153745 GTGCGGCTTCGATCAGAGT 60.154 57.895 0.00 0.00 35.61 3.24
335 336 0.529337 ATGTGCGGCTTCGATCAGAG 60.529 55.000 0.00 0.00 35.61 3.35
336 337 0.744281 TATGTGCGGCTTCGATCAGA 59.256 50.000 0.00 0.00 35.61 3.27
337 338 1.788258 ATATGTGCGGCTTCGATCAG 58.212 50.000 0.00 0.00 35.61 2.90
338 339 3.592898 ATATATGTGCGGCTTCGATCA 57.407 42.857 0.00 0.00 35.61 2.92
341 342 3.756963 AGAGTATATATGTGCGGCTTCGA 59.243 43.478 0.00 0.00 35.61 3.71
342 343 4.098055 AGAGTATATATGTGCGGCTTCG 57.902 45.455 0.00 0.00 0.00 3.79
343 344 7.884816 TTTTAGAGTATATATGTGCGGCTTC 57.115 36.000 0.00 0.00 0.00 3.86
365 366 3.460103 TCTTTACGGACGAGTGCTTTTT 58.540 40.909 0.00 0.00 0.00 1.94
366 367 3.102052 TCTTTACGGACGAGTGCTTTT 57.898 42.857 0.00 0.00 0.00 2.27
368 369 2.806608 TTCTTTACGGACGAGTGCTT 57.193 45.000 0.00 0.00 0.00 3.91
370 371 6.694411 TCTTATATTTCTTTACGGACGAGTGC 59.306 38.462 0.00 0.00 0.00 4.40
371 372 7.914346 ACTCTTATATTTCTTTACGGACGAGTG 59.086 37.037 0.00 0.00 0.00 3.51
372 373 7.914346 CACTCTTATATTTCTTTACGGACGAGT 59.086 37.037 0.00 0.00 0.00 4.18
373 374 7.914346 ACACTCTTATATTTCTTTACGGACGAG 59.086 37.037 0.00 0.00 0.00 4.18
374 375 7.765307 ACACTCTTATATTTCTTTACGGACGA 58.235 34.615 0.00 0.00 0.00 4.20
375 376 7.982371 ACACTCTTATATTTCTTTACGGACG 57.018 36.000 0.00 0.00 0.00 4.79
407 408 9.563748 GGATCACTAGTAGATCACTAAACTAGT 57.436 37.037 24.29 14.15 42.84 2.57
408 409 9.562408 TGGATCACTAGTAGATCACTAAACTAG 57.438 37.037 24.29 13.28 42.84 2.57
409 410 9.916360 TTGGATCACTAGTAGATCACTAAACTA 57.084 33.333 24.29 9.91 42.84 2.24
410 411 8.824756 TTGGATCACTAGTAGATCACTAAACT 57.175 34.615 24.29 0.00 42.84 2.66
411 412 9.303537 GTTTGGATCACTAGTAGATCACTAAAC 57.696 37.037 24.29 23.65 42.84 2.01
412 413 9.031537 TGTTTGGATCACTAGTAGATCACTAAA 57.968 33.333 24.29 19.94 42.84 1.85
413 414 8.467598 GTGTTTGGATCACTAGTAGATCACTAA 58.532 37.037 24.29 17.20 42.84 2.24
414 415 7.834681 AGTGTTTGGATCACTAGTAGATCACTA 59.165 37.037 24.29 14.15 43.17 2.74
415 416 6.665680 AGTGTTTGGATCACTAGTAGATCACT 59.334 38.462 24.29 19.03 43.17 3.41
416 417 6.868622 AGTGTTTGGATCACTAGTAGATCAC 58.131 40.000 24.29 18.13 43.17 3.06
417 418 6.892456 AGAGTGTTTGGATCACTAGTAGATCA 59.108 38.462 24.29 14.49 44.68 2.92
418 419 7.341445 AGAGTGTTTGGATCACTAGTAGATC 57.659 40.000 19.09 19.09 44.68 2.75
419 420 7.726033 AAGAGTGTTTGGATCACTAGTAGAT 57.274 36.000 3.59 1.09 44.68 1.98
420 421 8.824756 ATAAGAGTGTTTGGATCACTAGTAGA 57.175 34.615 3.59 0.00 44.68 2.59
424 425 9.482627 GGAATATAAGAGTGTTTGGATCACTAG 57.517 37.037 0.00 0.00 44.68 2.57
425 426 9.213777 AGGAATATAAGAGTGTTTGGATCACTA 57.786 33.333 0.00 0.00 44.68 2.74
426 427 8.095452 AGGAATATAAGAGTGTTTGGATCACT 57.905 34.615 0.00 0.00 46.86 3.41
427 428 8.738645 AAGGAATATAAGAGTGTTTGGATCAC 57.261 34.615 0.00 0.00 36.22 3.06
428 429 9.832445 GTAAGGAATATAAGAGTGTTTGGATCA 57.168 33.333 0.00 0.00 0.00 2.92
429 430 9.832445 TGTAAGGAATATAAGAGTGTTTGGATC 57.168 33.333 0.00 0.00 0.00 3.36
430 431 9.838339 CTGTAAGGAATATAAGAGTGTTTGGAT 57.162 33.333 0.00 0.00 0.00 3.41
431 432 9.042450 TCTGTAAGGAATATAAGAGTGTTTGGA 57.958 33.333 0.00 0.00 0.00 3.53
432 433 9.319143 CTCTGTAAGGAATATAAGAGTGTTTGG 57.681 37.037 0.00 0.00 0.00 3.28
449 450 6.013639 TCCTTTTCTTTACTCCCTCTGTAAGG 60.014 42.308 0.00 0.00 45.77 2.69
450 451 7.005709 TCCTTTTCTTTACTCCCTCTGTAAG 57.994 40.000 0.00 0.00 32.43 2.34
451 452 7.383156 TTCCTTTTCTTTACTCCCTCTGTAA 57.617 36.000 0.00 0.00 0.00 2.41
452 453 7.383156 TTTCCTTTTCTTTACTCCCTCTGTA 57.617 36.000 0.00 0.00 0.00 2.74
453 454 5.906772 TTCCTTTTCTTTACTCCCTCTGT 57.093 39.130 0.00 0.00 0.00 3.41
454 455 5.707764 CCTTTCCTTTTCTTTACTCCCTCTG 59.292 44.000 0.00 0.00 0.00 3.35
455 456 5.611408 TCCTTTCCTTTTCTTTACTCCCTCT 59.389 40.000 0.00 0.00 0.00 3.69
456 457 5.877491 TCCTTTCCTTTTCTTTACTCCCTC 58.123 41.667 0.00 0.00 0.00 4.30
457 458 5.924769 TCCTTTCCTTTTCTTTACTCCCT 57.075 39.130 0.00 0.00 0.00 4.20
458 459 6.776116 TCTTTCCTTTCCTTTTCTTTACTCCC 59.224 38.462 0.00 0.00 0.00 4.30
459 460 7.818997 TCTTTCCTTTCCTTTTCTTTACTCC 57.181 36.000 0.00 0.00 0.00 3.85
468 469 9.952030 TGTGTAATTTTTCTTTCCTTTCCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
469 470 9.952030 TTGTGTAATTTTTCTTTCCTTTCCTTT 57.048 25.926 0.00 0.00 0.00 3.11
470 471 9.952030 TTTGTGTAATTTTTCTTTCCTTTCCTT 57.048 25.926 0.00 0.00 0.00 3.36
471 472 9.599866 CTTTGTGTAATTTTTCTTTCCTTTCCT 57.400 29.630 0.00 0.00 0.00 3.36
472 473 8.335356 GCTTTGTGTAATTTTTCTTTCCTTTCC 58.665 33.333 0.00 0.00 0.00 3.13
473 474 8.335356 GGCTTTGTGTAATTTTTCTTTCCTTTC 58.665 33.333 0.00 0.00 0.00 2.62
474 475 7.826744 TGGCTTTGTGTAATTTTTCTTTCCTTT 59.173 29.630 0.00 0.00 0.00 3.11
475 476 7.334858 TGGCTTTGTGTAATTTTTCTTTCCTT 58.665 30.769 0.00 0.00 0.00 3.36
476 477 6.883744 TGGCTTTGTGTAATTTTTCTTTCCT 58.116 32.000 0.00 0.00 0.00 3.36
477 478 7.728847 ATGGCTTTGTGTAATTTTTCTTTCC 57.271 32.000 0.00 0.00 0.00 3.13
519 520 6.770785 GGAAATGTGGTATTAGCATCCTGTAA 59.229 38.462 0.00 0.00 0.00 2.41
520 521 6.101150 AGGAAATGTGGTATTAGCATCCTGTA 59.899 38.462 12.68 0.00 32.13 2.74
605 612 5.616488 TCTACTGCACGGTTTAAAAATCC 57.384 39.130 0.00 0.00 0.00 3.01
660 667 1.701031 TTTTGACCACGCCTCCCTCA 61.701 55.000 0.00 0.00 0.00 3.86
778 799 4.201920 GGGCGAGGTGAGTAAATCAAAATC 60.202 45.833 0.00 0.00 40.43 2.17
809 830 1.452651 CAAGCAGTGATGGGCGGAT 60.453 57.895 0.00 0.00 34.54 4.18
812 833 3.818787 GCCAAGCAGTGATGGGCG 61.819 66.667 11.87 0.00 37.19 6.13
813 834 2.362120 AGCCAAGCAGTGATGGGC 60.362 61.111 19.64 19.64 44.92 5.36
815 836 1.751927 GGGAGCCAAGCAGTGATGG 60.752 63.158 10.26 10.26 39.80 3.51
817 838 1.919600 GAGGGGAGCCAAGCAGTGAT 61.920 60.000 0.00 0.00 0.00 3.06
818 839 2.530151 AGGGGAGCCAAGCAGTGA 60.530 61.111 0.00 0.00 0.00 3.41
819 840 2.045536 GAGGGGAGCCAAGCAGTG 60.046 66.667 0.00 0.00 0.00 3.66
820 841 3.334054 GGAGGGGAGCCAAGCAGT 61.334 66.667 0.00 0.00 0.00 4.40
823 844 4.475135 GACGGAGGGGAGCCAAGC 62.475 72.222 0.00 0.00 0.00 4.01
853 885 3.286694 TACCTACCCACCCGCGTCT 62.287 63.158 4.92 0.00 0.00 4.18
858 890 2.713967 CCGTGTACCTACCCACCCG 61.714 68.421 0.00 0.00 0.00 5.28
870 902 2.605295 CTCCCACCACCCCGTGTA 60.605 66.667 0.00 0.00 31.47 2.90
929 994 3.988553 TATATAGGGGAACGGGCGGGG 62.989 61.905 0.00 0.00 0.00 5.73
938 1043 1.660242 GCGGGGGTTATATAGGGGAA 58.340 55.000 0.00 0.00 0.00 3.97
1213 1337 2.663196 GAACTGTCCCCACCGGAG 59.337 66.667 9.46 0.00 43.19 4.63
1980 3313 1.899534 GCCAACGTAGGTGGCCAAA 60.900 57.895 17.64 0.00 42.52 3.28
2044 3380 4.796495 CCCCTTGCTGGCGTACCC 62.796 72.222 0.00 0.00 33.59 3.69
2775 4111 4.102210 ACCTTGGTCTGAATCATCATCGAT 59.898 41.667 0.00 0.00 34.37 3.59
3074 4423 1.135546 CATATGCCGTTGTTCCGCAAA 60.136 47.619 0.00 0.00 39.03 3.68
3144 4495 0.250234 TGTCCATCTCCTTGCCGAAG 59.750 55.000 0.00 0.00 0.00 3.79
4325 5756 6.708054 CCTAAACAGTTCAATCTTGAGTGAGT 59.292 38.462 9.92 0.00 38.61 3.41
4550 5985 3.562505 GTGCTGATCTTGCAGTGAAAAG 58.437 45.455 12.85 0.00 41.41 2.27
4555 5990 1.531423 AAGGTGCTGATCTTGCAGTG 58.469 50.000 12.85 0.00 41.41 3.66
4786 7073 2.584835 ACAAAGCCACTCCATTGCTA 57.415 45.000 0.00 0.00 34.29 3.49
5164 7550 1.258445 CCCTCTGACGGCCAGTTACT 61.258 60.000 2.24 0.00 43.38 2.24
5165 7551 1.218316 CCCTCTGACGGCCAGTTAC 59.782 63.158 2.24 0.00 43.38 2.50
5226 7613 6.301169 AGAACATAGTTAAACAGGAGGGAG 57.699 41.667 0.00 0.00 0.00 4.30
5241 7629 7.172703 ACACGGTAAAAGAAAAGGAGAACATAG 59.827 37.037 0.00 0.00 0.00 2.23
5282 7670 6.389091 TCACTCACAATGGCAAAAATATGAC 58.611 36.000 0.00 0.00 0.00 3.06
5393 7895 8.992073 GCAGAAATTTGACAAATTAAGGAACAT 58.008 29.630 23.03 7.98 40.05 2.71
5404 7907 4.644234 TCTCACCTGCAGAAATTTGACAAA 59.356 37.500 17.39 2.48 0.00 2.83
5568 8072 3.960755 CACCATCTACCAGTATCTGACCA 59.039 47.826 0.00 0.00 32.44 4.02
5804 8309 1.831580 AGCAAAGGATTCAGACTGCC 58.168 50.000 0.00 0.00 0.00 4.85
5817 8322 2.929592 GCCTGAAATGGAGCAAGCAAAG 60.930 50.000 0.00 0.00 0.00 2.77
5822 8327 1.203994 CAAGGCCTGAAATGGAGCAAG 59.796 52.381 5.69 0.00 0.00 4.01
5823 8328 1.259609 CAAGGCCTGAAATGGAGCAA 58.740 50.000 5.69 0.00 0.00 3.91
5824 8329 0.612732 CCAAGGCCTGAAATGGAGCA 60.613 55.000 15.16 0.00 34.82 4.26
5825 8330 0.323725 TCCAAGGCCTGAAATGGAGC 60.324 55.000 18.34 0.00 37.05 4.70
5859 8364 3.774216 CTCCTTCTTCCTGACCTCATCTT 59.226 47.826 0.00 0.00 0.00 2.40
5947 8452 9.672673 AAGAGTATGCAAATTCAGTACAGTATT 57.327 29.630 0.00 0.00 0.00 1.89
5949 8454 8.311109 TGAAGAGTATGCAAATTCAGTACAGTA 58.689 33.333 0.00 0.00 0.00 2.74
5953 8458 6.090898 ACGTGAAGAGTATGCAAATTCAGTAC 59.909 38.462 0.00 0.00 30.99 2.73
5956 8548 5.536554 ACGTGAAGAGTATGCAAATTCAG 57.463 39.130 0.00 0.00 30.99 3.02
5958 8550 7.148967 GGAAAAACGTGAAGAGTATGCAAATTC 60.149 37.037 0.00 0.00 0.00 2.17
5966 8558 4.969484 ACTGGGAAAAACGTGAAGAGTAT 58.031 39.130 0.00 0.00 0.00 2.12
5967 8559 4.411256 ACTGGGAAAAACGTGAAGAGTA 57.589 40.909 0.00 0.00 0.00 2.59
5969 8561 4.211374 CAGTACTGGGAAAAACGTGAAGAG 59.789 45.833 15.49 0.00 0.00 2.85
5970 8562 4.124238 CAGTACTGGGAAAAACGTGAAGA 58.876 43.478 15.49 0.00 0.00 2.87
5971 8564 3.303791 GCAGTACTGGGAAAAACGTGAAG 60.304 47.826 23.95 0.00 0.00 3.02
5977 8570 4.278419 AGAACATGCAGTACTGGGAAAAAC 59.722 41.667 23.95 6.25 0.00 2.43
5978 8571 4.469657 AGAACATGCAGTACTGGGAAAAA 58.530 39.130 23.95 0.00 0.00 1.94
5979 8572 4.098914 AGAACATGCAGTACTGGGAAAA 57.901 40.909 23.95 0.00 0.00 2.29
5998 8630 7.141100 ACAGAAAGTTTCAGTTTTCGAAAGA 57.859 32.000 17.65 2.41 38.13 2.52
6003 8638 9.885743 CAAATTTACAGAAAGTTTCAGTTTTCG 57.114 29.630 17.48 5.78 38.13 3.46
6005 8640 8.664798 GGCAAATTTACAGAAAGTTTCAGTTTT 58.335 29.630 17.48 10.22 30.71 2.43
6015 8651 5.176223 CACTGCAAGGCAAATTTACAGAAAG 59.824 40.000 0.00 0.00 38.41 2.62
6018 8654 3.888323 TCACTGCAAGGCAAATTTACAGA 59.112 39.130 0.00 0.00 38.41 3.41
6019 8655 4.241590 TCACTGCAAGGCAAATTTACAG 57.758 40.909 0.00 0.00 38.41 2.74
6023 8659 2.557924 TCGATCACTGCAAGGCAAATTT 59.442 40.909 0.00 0.00 38.41 1.82
6025 8661 1.741706 CTCGATCACTGCAAGGCAAAT 59.258 47.619 0.00 0.00 38.41 2.32
6087 8723 3.688673 GCTTCAGAATCACTCTTCCAAGG 59.311 47.826 0.00 0.00 29.07 3.61
6162 8798 4.520492 AGTGTTTTCTGGATCATGTTGTCC 59.480 41.667 0.00 7.35 35.02 4.02
6201 8837 2.571757 GTGATGACCGTCGCCTCA 59.428 61.111 0.00 0.00 0.00 3.86
6323 8967 6.313519 AGCACATGGGATTAGTAGAAGAAA 57.686 37.500 0.00 0.00 0.00 2.52
6585 9245 1.723542 CGAGAGCACTTCACATCACAC 59.276 52.381 0.00 0.00 0.00 3.82
6604 9269 1.170919 ACCGTGGTAGATCCGATCCG 61.171 60.000 4.67 1.40 39.52 4.18
6605 9270 0.314302 CACCGTGGTAGATCCGATCC 59.686 60.000 4.67 0.00 39.52 3.36
6606 9271 1.030457 ACACCGTGGTAGATCCGATC 58.970 55.000 3.03 0.00 39.52 3.69
6607 9272 1.136305 CAACACCGTGGTAGATCCGAT 59.864 52.381 3.03 0.00 39.52 4.18
6608 9273 0.528924 CAACACCGTGGTAGATCCGA 59.471 55.000 3.03 0.00 39.52 4.55
6740 9407 2.028020 CACTACCAGGGTTCAGGTCTTC 60.028 54.545 0.00 0.00 39.31 2.87
6768 9440 2.098614 TGTATGGTCCGCCGTAAAGTA 58.901 47.619 0.00 0.00 37.94 2.24
6830 9502 9.231297 CTTCATTTATTTATCCGGGTATCACAT 57.769 33.333 0.00 0.00 0.00 3.21
6901 9579 5.994054 CACAGACCCACAATATCAATAGGAG 59.006 44.000 0.00 0.00 0.00 3.69
6963 9641 1.500512 TACAAGAACACGCAACGGCC 61.501 55.000 0.00 0.00 36.38 6.13
7024 9703 4.830046 TGGCAATGGTTTTAGTAGAGCAAA 59.170 37.500 0.00 0.00 0.00 3.68
7027 9706 3.756434 TGTGGCAATGGTTTTAGTAGAGC 59.244 43.478 0.00 0.00 0.00 4.09
7034 9713 6.849085 ACATATTCTGTGGCAATGGTTTTA 57.151 33.333 0.00 0.00 36.48 1.52
7036 9715 5.743636 AACATATTCTGTGGCAATGGTTT 57.256 34.783 0.00 0.00 38.39 3.27
7038 9717 5.302568 CCATAACATATTCTGTGGCAATGGT 59.697 40.000 0.00 0.00 38.39 3.55
7040 9719 5.224888 GCCATAACATATTCTGTGGCAATG 58.775 41.667 13.75 0.00 41.72 2.82
7041 9720 4.281688 GGCCATAACATATTCTGTGGCAAT 59.718 41.667 18.10 0.00 43.13 3.56
7042 9721 3.636300 GGCCATAACATATTCTGTGGCAA 59.364 43.478 18.10 0.00 43.13 4.52
7044 9723 3.254166 CAGGCCATAACATATTCTGTGGC 59.746 47.826 5.01 11.31 41.50 5.01
7045 9724 4.717877 TCAGGCCATAACATATTCTGTGG 58.282 43.478 5.01 0.00 38.39 4.17
7047 9726 8.995027 TTTATTCAGGCCATAACATATTCTGT 57.005 30.769 5.01 0.00 40.84 3.41
7048 9727 9.683069 GTTTTATTCAGGCCATAACATATTCTG 57.317 33.333 5.01 0.00 0.00 3.02
7049 9728 9.646522 AGTTTTATTCAGGCCATAACATATTCT 57.353 29.630 5.01 0.00 0.00 2.40
7053 9732 9.860650 ATGTAGTTTTATTCAGGCCATAACATA 57.139 29.630 5.01 0.00 0.00 2.29
7054 9733 8.766994 ATGTAGTTTTATTCAGGCCATAACAT 57.233 30.769 5.01 0.00 0.00 2.71
7056 9735 8.220755 TGATGTAGTTTTATTCAGGCCATAAC 57.779 34.615 5.01 0.00 0.00 1.89
7057 9736 7.502226 CCTGATGTAGTTTTATTCAGGCCATAA 59.498 37.037 5.01 0.00 37.13 1.90
7059 9738 5.829924 CCTGATGTAGTTTTATTCAGGCCAT 59.170 40.000 5.01 0.00 37.13 4.40
7060 9739 5.192927 CCTGATGTAGTTTTATTCAGGCCA 58.807 41.667 5.01 0.00 37.13 5.36
7061 9740 5.757850 CCTGATGTAGTTTTATTCAGGCC 57.242 43.478 0.00 0.00 37.13 5.19
7064 9743 8.246180 ACAATTGCCTGATGTAGTTTTATTCAG 58.754 33.333 5.05 0.00 0.00 3.02
7065 9744 8.121305 ACAATTGCCTGATGTAGTTTTATTCA 57.879 30.769 5.05 0.00 0.00 2.57
7068 9747 9.243105 ACTTACAATTGCCTGATGTAGTTTTAT 57.757 29.630 5.05 0.00 31.72 1.40
7069 9748 8.630054 ACTTACAATTGCCTGATGTAGTTTTA 57.370 30.769 5.05 0.00 31.72 1.52
7070 9749 7.230510 TGACTTACAATTGCCTGATGTAGTTTT 59.769 33.333 5.05 0.00 31.72 2.43
7071 9750 6.714810 TGACTTACAATTGCCTGATGTAGTTT 59.285 34.615 5.05 0.00 31.72 2.66
7072 9751 6.149474 GTGACTTACAATTGCCTGATGTAGTT 59.851 38.462 5.05 0.00 31.72 2.24
7073 9752 5.643777 GTGACTTACAATTGCCTGATGTAGT 59.356 40.000 5.05 0.00 31.72 2.73
7076 9755 4.397420 TGTGACTTACAATTGCCTGATGT 58.603 39.130 5.05 0.00 36.06 3.06
7142 9826 1.000060 TGTCCTGAAAATGCAAGCAGC 60.000 47.619 0.00 0.00 45.96 5.25
7176 9860 0.037447 AAAGGGGCTCTCTGTGCTTC 59.963 55.000 0.00 0.00 0.00 3.86
7190 9874 0.401738 TGAGAAGGTCAGCCAAAGGG 59.598 55.000 0.00 0.00 37.19 3.95
7215 9899 5.525745 TGCTGAACTTTCATCGTAGACAAAA 59.474 36.000 0.00 0.00 42.51 2.44
7217 9901 4.627058 TGCTGAACTTTCATCGTAGACAA 58.373 39.130 0.00 0.00 42.51 3.18
7218 9902 4.251543 TGCTGAACTTTCATCGTAGACA 57.748 40.909 0.00 0.00 42.51 3.41
7219 9903 5.591643 TTTGCTGAACTTTCATCGTAGAC 57.408 39.130 0.00 0.00 42.51 2.59
7220 9904 5.931724 TCATTTGCTGAACTTTCATCGTAGA 59.068 36.000 0.00 0.00 45.75 2.59
7221 9905 6.169419 TCATTTGCTGAACTTTCATCGTAG 57.831 37.500 0.00 0.00 36.46 3.51
7223 9907 5.633830 ATCATTTGCTGAACTTTCATCGT 57.366 34.783 0.00 0.00 37.44 3.73
7224 9908 6.545508 TGTATCATTTGCTGAACTTTCATCG 58.454 36.000 0.00 0.00 37.44 3.84
7227 9911 9.195411 GAATTTGTATCATTTGCTGAACTTTCA 57.805 29.630 0.00 0.00 37.44 2.69
7228 9912 9.415544 AGAATTTGTATCATTTGCTGAACTTTC 57.584 29.630 0.00 0.00 37.44 2.62
7231 9915 8.345724 AGAGAATTTGTATCATTTGCTGAACT 57.654 30.769 0.00 0.00 37.44 3.01
7232 9916 8.857216 CAAGAGAATTTGTATCATTTGCTGAAC 58.143 33.333 0.00 0.00 37.44 3.18
7233 9917 8.579006 ACAAGAGAATTTGTATCATTTGCTGAA 58.421 29.630 0.00 0.00 39.40 3.02
7234 9918 8.114331 ACAAGAGAATTTGTATCATTTGCTGA 57.886 30.769 0.00 0.00 39.40 4.26
7235 9919 8.752766 AACAAGAGAATTTGTATCATTTGCTG 57.247 30.769 0.00 0.00 40.24 4.41
7276 9973 0.529337 CCGTCTAGAGAGTCGGCGTA 60.529 60.000 6.85 0.00 45.25 4.42
7281 9978 0.309302 CATGGCCGTCTAGAGAGTCG 59.691 60.000 0.00 0.00 34.51 4.18
7284 9981 1.365633 GGCATGGCCGTCTAGAGAG 59.634 63.158 8.35 0.00 39.62 3.20
7285 9982 3.538614 GGCATGGCCGTCTAGAGA 58.461 61.111 8.35 0.00 39.62 3.10
7302 9999 1.407258 CTCCTTCTGAAGCCGAGGTAG 59.593 57.143 11.93 0.00 0.00 3.18
7303 10000 1.005569 TCTCCTTCTGAAGCCGAGGTA 59.994 52.381 17.84 3.66 0.00 3.08
7304 10001 0.251832 TCTCCTTCTGAAGCCGAGGT 60.252 55.000 17.84 0.00 0.00 3.85
7305 10002 1.118838 ATCTCCTTCTGAAGCCGAGG 58.881 55.000 17.84 5.24 0.00 4.63
7307 10004 5.359194 AATTTATCTCCTTCTGAAGCCGA 57.641 39.130 11.93 10.00 0.00 5.54
7308 10005 6.203723 CCTAAATTTATCTCCTTCTGAAGCCG 59.796 42.308 11.93 5.06 0.00 5.52
7309 10006 7.057264 ACCTAAATTTATCTCCTTCTGAAGCC 58.943 38.462 11.93 0.00 0.00 4.35
7310 10007 9.267084 CTACCTAAATTTATCTCCTTCTGAAGC 57.733 37.037 11.93 0.00 0.00 3.86
7312 10009 8.211629 GCCTACCTAAATTTATCTCCTTCTGAA 58.788 37.037 0.00 0.00 0.00 3.02
7313 10010 7.202102 GGCCTACCTAAATTTATCTCCTTCTGA 60.202 40.741 0.00 0.00 0.00 3.27
7314 10011 6.937465 GGCCTACCTAAATTTATCTCCTTCTG 59.063 42.308 0.00 0.00 0.00 3.02
7316 10013 6.838382 TGGCCTACCTAAATTTATCTCCTTC 58.162 40.000 3.32 0.00 36.63 3.46
7318 10015 7.234355 CAATGGCCTACCTAAATTTATCTCCT 58.766 38.462 3.32 0.00 36.63 3.69
7319 10016 6.434340 CCAATGGCCTACCTAAATTTATCTCC 59.566 42.308 3.32 0.00 36.63 3.71
7320 10017 7.231467 TCCAATGGCCTACCTAAATTTATCTC 58.769 38.462 3.32 0.00 36.63 2.75
7321 10018 7.161715 TCCAATGGCCTACCTAAATTTATCT 57.838 36.000 3.32 0.00 36.63 1.98
7322 10019 7.451566 ACATCCAATGGCCTACCTAAATTTATC 59.548 37.037 3.32 0.00 36.63 1.75
7327 10024 4.167892 TCACATCCAATGGCCTACCTAAAT 59.832 41.667 3.32 0.00 36.63 1.40
7328 10025 3.525609 TCACATCCAATGGCCTACCTAAA 59.474 43.478 3.32 0.00 36.63 1.85
7329 10026 3.119319 TCACATCCAATGGCCTACCTAA 58.881 45.455 3.32 0.00 36.63 2.69
7330 10027 2.770447 TCACATCCAATGGCCTACCTA 58.230 47.619 3.32 0.00 36.63 3.08
7333 10030 2.684881 CAGTTCACATCCAATGGCCTAC 59.315 50.000 3.32 0.00 33.60 3.18
7335 10032 1.355381 TCAGTTCACATCCAATGGCCT 59.645 47.619 3.32 0.00 33.60 5.19
7347 10051 7.428826 ACTTCAAAAGATGGATTTCAGTTCAC 58.571 34.615 0.00 0.00 0.00 3.18
7359 10063 6.145535 CGAGGAAAAGAACTTCAAAAGATGG 58.854 40.000 0.00 0.00 0.00 3.51
7372 10076 1.405526 CCTGATCGCCGAGGAAAAGAA 60.406 52.381 0.00 0.00 0.00 2.52
7378 10082 1.218047 CAAACCTGATCGCCGAGGA 59.782 57.895 3.90 0.00 33.16 3.71
7383 10096 1.808411 TCTTCACAAACCTGATCGCC 58.192 50.000 0.00 0.00 0.00 5.54
7388 10101 2.655090 TGGCATCTTCACAAACCTGA 57.345 45.000 0.00 0.00 0.00 3.86
7392 10105 3.808726 TGCAATTTGGCATCTTCACAAAC 59.191 39.130 0.00 0.00 39.25 2.93
7397 10110 3.004171 GCATTGCAATTTGGCATCTTCA 58.996 40.909 9.83 0.00 44.48 3.02
7403 10116 0.685660 TCCAGCATTGCAATTTGGCA 59.314 45.000 25.13 15.86 43.19 4.92
7416 10129 3.763360 CTCTTCTCTTCTCTTCTCCAGCA 59.237 47.826 0.00 0.00 0.00 4.41
7418 10131 5.943416 TGTACTCTTCTCTTCTCTTCTCCAG 59.057 44.000 0.00 0.00 0.00 3.86
7436 10154 7.386848 ACATTGGTTGTGTATTGTACTGTACTC 59.613 37.037 17.98 7.52 37.11 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.