Multiple sequence alignment - TraesCS3D01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G129100 chr3D 100.000 3930 0 0 1 3930 88350183 88354112 0.000000e+00 7258.0
1 TraesCS3D01G129100 chr3D 79.725 873 142 23 3080 3930 313937630 313936771 2.020000e-167 599.0
2 TraesCS3D01G129100 chr3D 89.567 393 39 2 104 495 14247528 14247137 7.580000e-137 497.0
3 TraesCS3D01G129100 chr3D 85.258 407 40 6 110 498 378197758 378197354 6.120000e-108 401.0
4 TraesCS3D01G129100 chr3D 83.962 212 32 2 3720 3930 84968214 84968004 6.660000e-48 202.0
5 TraesCS3D01G129100 chr3D 83.217 143 24 0 2430 2572 136402804 136402946 8.860000e-27 132.0
6 TraesCS3D01G129100 chr3D 82.192 73 11 2 595 666 466817862 466817933 1.180000e-05 62.1
7 TraesCS3D01G129100 chr3B 93.322 2306 88 18 786 3067 137749482 137751745 0.000000e+00 3345.0
8 TraesCS3D01G129100 chr3B 91.051 257 22 1 493 749 137746186 137746441 2.910000e-91 346.0
9 TraesCS3D01G129100 chr3B 84.028 144 23 0 2430 2573 194759246 194759389 5.300000e-29 139.0
10 TraesCS3D01G129100 chr3B 86.667 120 16 0 191 310 173319589 173319470 2.460000e-27 134.0
11 TraesCS3D01G129100 chr3A 92.915 1369 44 7 1665 3011 105113314 105111977 0.000000e+00 1941.0
12 TraesCS3D01G129100 chr3A 92.687 1135 59 14 496 1615 105114454 105113329 0.000000e+00 1615.0
13 TraesCS3D01G129100 chr3A 82.517 143 25 0 2430 2572 154032109 154032251 4.120000e-25 126.0
14 TraesCS3D01G129100 chr5A 82.838 874 111 25 3080 3930 94309431 94308574 0.000000e+00 747.0
15 TraesCS3D01G129100 chr5A 78.388 546 86 19 3414 3930 658595753 658595211 3.790000e-85 326.0
16 TraesCS3D01G129100 chr5A 88.816 152 15 2 2030 2180 291133328 291133478 6.710000e-43 185.0
17 TraesCS3D01G129100 chr5A 84.795 171 23 2 2034 2204 632836475 632836642 6.750000e-38 169.0
18 TraesCS3D01G129100 chr5A 86.087 115 16 0 105 219 188588444 188588330 1.480000e-24 124.0
19 TraesCS3D01G129100 chr7D 82.739 869 119 12 3081 3930 212215737 212214881 0.000000e+00 745.0
20 TraesCS3D01G129100 chr5B 80.482 871 137 13 3080 3929 371391801 371392659 1.540000e-178 636.0
21 TraesCS3D01G129100 chr5B 73.325 851 148 58 3119 3908 529964035 529964867 1.410000e-59 241.0
22 TraesCS3D01G129100 chr5B 88.079 151 18 0 2030 2180 234880144 234880294 3.120000e-41 180.0
23 TraesCS3D01G129100 chr5B 85.380 171 22 2 2034 2204 635194581 635194748 1.450000e-39 174.0
24 TraesCS3D01G129100 chr2D 78.422 862 126 35 3101 3930 322503301 322504134 1.260000e-139 507.0
25 TraesCS3D01G129100 chr2D 89.744 390 39 1 102 491 638923939 638924327 7.580000e-137 497.0
26 TraesCS3D01G129100 chr2D 79.420 690 99 25 3267 3930 560968609 560969281 7.750000e-122 448.0
27 TraesCS3D01G129100 chr4B 77.933 861 141 30 3083 3929 580798470 580797645 3.530000e-135 492.0
28 TraesCS3D01G129100 chr4B 85.340 191 27 1 3741 3930 3724842 3725032 3.100000e-46 196.0
29 TraesCS3D01G129100 chr2A 89.487 390 40 1 102 491 764817751 764818139 3.530000e-135 492.0
30 TraesCS3D01G129100 chr2A 82.292 192 32 2 559 749 61961756 61961946 8.740000e-37 165.0
31 TraesCS3D01G129100 chr2A 78.968 252 38 10 3690 3930 632509978 632510225 1.460000e-34 158.0
32 TraesCS3D01G129100 chr2A 87.611 113 12 2 105 216 435675629 435675740 3.190000e-26 130.0
33 TraesCS3D01G129100 chr2A 86.607 112 15 0 105 216 432725100 432725211 1.480000e-24 124.0
34 TraesCS3D01G129100 chr2A 73.952 334 55 24 3460 3765 632509198 632509527 5.370000e-19 106.0
35 TraesCS3D01G129100 chr2A 88.608 79 5 3 3690 3765 632509871 632509948 4.180000e-15 93.5
36 TraesCS3D01G129100 chr2A 75.258 194 42 5 558 746 751235880 751235688 1.950000e-13 87.9
37 TraesCS3D01G129100 chr4D 89.406 387 38 3 106 491 16509610 16509994 5.900000e-133 484.0
38 TraesCS3D01G129100 chr4D 86.131 411 40 6 101 494 66502879 66502469 1.010000e-115 427.0
39 TraesCS3D01G129100 chr4D 79.665 477 58 24 3304 3762 448372816 448372361 1.370000e-79 307.0
40 TraesCS3D01G129100 chr5D 78.018 787 130 22 3171 3929 276704432 276703661 4.630000e-124 455.0
41 TraesCS3D01G129100 chr5D 84.416 308 44 4 192 497 519637231 519636926 2.300000e-77 300.0
42 TraesCS3D01G129100 chr5D 88.079 151 18 0 2030 2180 218189951 218190101 3.120000e-41 180.0
43 TraesCS3D01G129100 chr5D 84.393 173 24 2 2032 2204 505215643 505215812 2.430000e-37 167.0
44 TraesCS3D01G129100 chr6D 80.097 618 97 15 3079 3696 449158436 449159027 1.680000e-118 436.0
45 TraesCS3D01G129100 chrUn 78.581 733 104 30 3224 3930 47931196 47930491 6.030000e-118 435.0
46 TraesCS3D01G129100 chr4A 81.942 515 67 16 3440 3929 602867530 602868043 2.830000e-111 412.0
47 TraesCS3D01G129100 chr4A 83.721 129 21 0 2444 2572 85569776 85569904 5.330000e-24 122.0
48 TraesCS3D01G129100 chr6B 85.526 380 34 5 137 497 519423992 519423615 1.030000e-100 377.0
49 TraesCS3D01G129100 chr6B 88.079 151 15 2 2031 2178 507593471 507593321 4.040000e-40 176.0
50 TraesCS3D01G129100 chr2B 79.608 510 71 20 3448 3930 390608910 390609413 6.290000e-88 335.0
51 TraesCS3D01G129100 chr1D 89.316 234 25 0 257 490 241164031 241163798 1.070000e-75 294.0
52 TraesCS3D01G129100 chr1D 76.825 315 59 12 1230 1540 307833514 307833210 8.740000e-37 165.0
53 TraesCS3D01G129100 chr1D 85.350 157 22 1 2426 2582 307832754 307832599 1.130000e-35 161.0
54 TraesCS3D01G129100 chr1D 87.826 115 12 2 106 219 113584913 113584800 2.460000e-27 134.0
55 TraesCS3D01G129100 chr1B 77.188 320 58 12 1230 1540 416823324 416823011 5.220000e-39 172.0
56 TraesCS3D01G129100 chr1B 84.393 173 23 4 2412 2582 416822564 416822394 2.430000e-37 167.0
57 TraesCS3D01G129100 chr1A 76.825 315 59 12 1230 1540 387029935 387029631 8.740000e-37 165.0
58 TraesCS3D01G129100 chr1A 85.350 157 22 1 2426 2582 387029180 387029025 1.130000e-35 161.0
59 TraesCS3D01G129100 chr7A 86.957 115 15 0 105 219 412554016 412553902 3.190000e-26 130.0
60 TraesCS3D01G129100 chr6A 85.484 62 6 2 569 628 115348580 115348640 1.180000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G129100 chr3D 88350183 88354112 3929 False 7258.0 7258 100.0000 1 3930 1 chr3D.!!$F1 3929
1 TraesCS3D01G129100 chr3D 313936771 313937630 859 True 599.0 599 79.7250 3080 3930 1 chr3D.!!$R3 850
2 TraesCS3D01G129100 chr3B 137746186 137751745 5559 False 1845.5 3345 92.1865 493 3067 2 chr3B.!!$F2 2574
3 TraesCS3D01G129100 chr3A 105111977 105114454 2477 True 1778.0 1941 92.8010 496 3011 2 chr3A.!!$R1 2515
4 TraesCS3D01G129100 chr5A 94308574 94309431 857 True 747.0 747 82.8380 3080 3930 1 chr5A.!!$R1 850
5 TraesCS3D01G129100 chr5A 658595211 658595753 542 True 326.0 326 78.3880 3414 3930 1 chr5A.!!$R3 516
6 TraesCS3D01G129100 chr7D 212214881 212215737 856 True 745.0 745 82.7390 3081 3930 1 chr7D.!!$R1 849
7 TraesCS3D01G129100 chr5B 371391801 371392659 858 False 636.0 636 80.4820 3080 3929 1 chr5B.!!$F2 849
8 TraesCS3D01G129100 chr5B 529964035 529964867 832 False 241.0 241 73.3250 3119 3908 1 chr5B.!!$F3 789
9 TraesCS3D01G129100 chr2D 322503301 322504134 833 False 507.0 507 78.4220 3101 3930 1 chr2D.!!$F1 829
10 TraesCS3D01G129100 chr2D 560968609 560969281 672 False 448.0 448 79.4200 3267 3930 1 chr2D.!!$F2 663
11 TraesCS3D01G129100 chr4B 580797645 580798470 825 True 492.0 492 77.9330 3083 3929 1 chr4B.!!$R1 846
12 TraesCS3D01G129100 chr5D 276703661 276704432 771 True 455.0 455 78.0180 3171 3929 1 chr5D.!!$R1 758
13 TraesCS3D01G129100 chr6D 449158436 449159027 591 False 436.0 436 80.0970 3079 3696 1 chr6D.!!$F1 617
14 TraesCS3D01G129100 chrUn 47930491 47931196 705 True 435.0 435 78.5810 3224 3930 1 chrUn.!!$R1 706
15 TraesCS3D01G129100 chr4A 602867530 602868043 513 False 412.0 412 81.9420 3440 3929 1 chr4A.!!$F2 489
16 TraesCS3D01G129100 chr2B 390608910 390609413 503 False 335.0 335 79.6080 3448 3930 1 chr2B.!!$F1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.029567 GCGGATCTACAGGTGAGTCG 59.970 60.0 0.00 0.00 0.00 4.18 F
1940 4970 0.027979 TAATGATTTGAGCTGCGCGC 59.972 50.0 27.26 27.26 39.57 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 5280 1.065572 CACGACGACGAGTGACCATG 61.066 60.0 15.32 0.0 42.66 3.66 R
3315 6366 0.178990 AAGTGGAGGGAAAGTGTGGC 60.179 55.0 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.112341 GAGGTGCGTCGCGGTAGT 62.112 66.667 13.38 0.00 0.00 2.73
22 23 4.415332 AGGTGCGTCGCGGTAGTG 62.415 66.667 13.38 0.00 0.00 2.74
26 27 4.203076 GCGTCGCGGTAGTGGGAT 62.203 66.667 6.13 0.00 33.10 3.85
27 28 2.278596 CGTCGCGGTAGTGGGATG 60.279 66.667 6.13 0.00 33.10 3.51
28 29 2.106332 GTCGCGGTAGTGGGATGG 59.894 66.667 6.13 0.00 33.10 3.51
29 30 3.151710 TCGCGGTAGTGGGATGGG 61.152 66.667 6.13 0.00 0.00 4.00
30 31 4.235762 CGCGGTAGTGGGATGGGG 62.236 72.222 0.00 0.00 0.00 4.96
31 32 2.766651 GCGGTAGTGGGATGGGGA 60.767 66.667 0.00 0.00 0.00 4.81
32 33 2.372074 GCGGTAGTGGGATGGGGAA 61.372 63.158 0.00 0.00 0.00 3.97
33 34 1.917336 GCGGTAGTGGGATGGGGAAA 61.917 60.000 0.00 0.00 0.00 3.13
34 35 0.621609 CGGTAGTGGGATGGGGAAAA 59.378 55.000 0.00 0.00 0.00 2.29
35 36 1.408266 CGGTAGTGGGATGGGGAAAAG 60.408 57.143 0.00 0.00 0.00 2.27
36 37 1.639108 GGTAGTGGGATGGGGAAAAGT 59.361 52.381 0.00 0.00 0.00 2.66
37 38 2.848071 GGTAGTGGGATGGGGAAAAGTA 59.152 50.000 0.00 0.00 0.00 2.24
38 39 3.267551 GGTAGTGGGATGGGGAAAAGTAA 59.732 47.826 0.00 0.00 0.00 2.24
39 40 4.264038 GGTAGTGGGATGGGGAAAAGTAAA 60.264 45.833 0.00 0.00 0.00 2.01
40 41 4.479156 AGTGGGATGGGGAAAAGTAAAA 57.521 40.909 0.00 0.00 0.00 1.52
41 42 4.416516 AGTGGGATGGGGAAAAGTAAAAG 58.583 43.478 0.00 0.00 0.00 2.27
42 43 4.140782 AGTGGGATGGGGAAAAGTAAAAGT 60.141 41.667 0.00 0.00 0.00 2.66
43 44 4.021456 GTGGGATGGGGAAAAGTAAAAGTG 60.021 45.833 0.00 0.00 0.00 3.16
44 45 3.513912 GGGATGGGGAAAAGTAAAAGTGG 59.486 47.826 0.00 0.00 0.00 4.00
45 46 3.056107 GGATGGGGAAAAGTAAAAGTGGC 60.056 47.826 0.00 0.00 0.00 5.01
46 47 3.033659 TGGGGAAAAGTAAAAGTGGCA 57.966 42.857 0.00 0.00 0.00 4.92
47 48 3.375699 TGGGGAAAAGTAAAAGTGGCAA 58.624 40.909 0.00 0.00 0.00 4.52
48 49 3.386402 TGGGGAAAAGTAAAAGTGGCAAG 59.614 43.478 0.00 0.00 0.00 4.01
49 50 3.244078 GGGGAAAAGTAAAAGTGGCAAGG 60.244 47.826 0.00 0.00 0.00 3.61
50 51 3.244078 GGGAAAAGTAAAAGTGGCAAGGG 60.244 47.826 0.00 0.00 0.00 3.95
51 52 3.639561 GGAAAAGTAAAAGTGGCAAGGGA 59.360 43.478 0.00 0.00 0.00 4.20
52 53 4.262036 GGAAAAGTAAAAGTGGCAAGGGAG 60.262 45.833 0.00 0.00 0.00 4.30
53 54 1.911057 AGTAAAAGTGGCAAGGGAGC 58.089 50.000 0.00 0.00 0.00 4.70
54 55 0.521735 GTAAAAGTGGCAAGGGAGCG 59.478 55.000 0.00 0.00 34.64 5.03
55 56 0.109723 TAAAAGTGGCAAGGGAGCGT 59.890 50.000 0.00 0.00 34.64 5.07
56 57 0.109723 AAAAGTGGCAAGGGAGCGTA 59.890 50.000 0.00 0.00 34.64 4.42
57 58 0.321653 AAAGTGGCAAGGGAGCGTAG 60.322 55.000 0.00 0.00 34.64 3.51
58 59 1.481056 AAGTGGCAAGGGAGCGTAGT 61.481 55.000 0.00 0.00 34.64 2.73
59 60 1.003718 GTGGCAAGGGAGCGTAGTT 60.004 57.895 0.00 0.00 34.64 2.24
60 61 0.605589 GTGGCAAGGGAGCGTAGTTT 60.606 55.000 0.00 0.00 34.64 2.66
61 62 0.321298 TGGCAAGGGAGCGTAGTTTC 60.321 55.000 0.00 0.00 34.64 2.78
62 63 0.321298 GGCAAGGGAGCGTAGTTTCA 60.321 55.000 0.00 0.00 34.64 2.69
63 64 1.519408 GCAAGGGAGCGTAGTTTCAA 58.481 50.000 0.00 0.00 0.00 2.69
64 65 1.877443 GCAAGGGAGCGTAGTTTCAAA 59.123 47.619 0.00 0.00 0.00 2.69
65 66 2.350484 GCAAGGGAGCGTAGTTTCAAAC 60.350 50.000 0.00 0.00 0.00 2.93
66 67 3.139077 CAAGGGAGCGTAGTTTCAAACT 58.861 45.455 8.15 8.15 45.40 2.66
67 68 2.767505 AGGGAGCGTAGTTTCAAACTG 58.232 47.619 13.39 0.00 42.84 3.16
68 69 1.804748 GGGAGCGTAGTTTCAAACTGG 59.195 52.381 13.39 5.97 42.84 4.00
69 70 1.197036 GGAGCGTAGTTTCAAACTGGC 59.803 52.381 13.39 15.16 42.84 4.85
70 71 2.256117 AGCGTAGTTTCAAACTGGCT 57.744 45.000 19.49 19.49 43.32 4.75
71 72 3.323243 GAGCGTAGTTTCAAACTGGCTA 58.677 45.455 23.12 0.00 46.02 3.93
72 73 3.326747 AGCGTAGTTTCAAACTGGCTAG 58.673 45.455 22.26 0.00 44.99 3.42
73 74 2.159693 GCGTAGTTTCAAACTGGCTAGC 60.160 50.000 13.39 6.04 42.84 3.42
74 75 2.415512 CGTAGTTTCAAACTGGCTAGCC 59.584 50.000 27.71 27.71 42.84 3.93
75 76 2.959465 AGTTTCAAACTGGCTAGCCT 57.041 45.000 33.07 12.84 41.01 4.58
76 77 3.229697 AGTTTCAAACTGGCTAGCCTT 57.770 42.857 33.07 18.36 41.01 4.35
77 78 3.566351 AGTTTCAAACTGGCTAGCCTTT 58.434 40.909 33.07 22.95 41.01 3.11
78 79 3.960755 AGTTTCAAACTGGCTAGCCTTTT 59.039 39.130 33.07 26.58 41.01 2.27
79 80 4.405680 AGTTTCAAACTGGCTAGCCTTTTT 59.594 37.500 33.07 26.26 41.01 1.94
99 100 4.911514 TTTTCAAAGACAACTGGGTAGC 57.088 40.909 0.00 0.00 0.00 3.58
100 101 2.561478 TCAAAGACAACTGGGTAGCC 57.439 50.000 3.29 3.29 0.00 3.93
101 102 2.054799 TCAAAGACAACTGGGTAGCCT 58.945 47.619 13.11 0.00 0.00 4.58
102 103 2.441750 TCAAAGACAACTGGGTAGCCTT 59.558 45.455 13.11 0.00 0.00 4.35
103 104 3.649023 TCAAAGACAACTGGGTAGCCTTA 59.351 43.478 13.11 0.00 0.00 2.69
104 105 3.983044 AAGACAACTGGGTAGCCTTAG 57.017 47.619 13.11 4.56 0.00 2.18
105 106 2.188817 AGACAACTGGGTAGCCTTAGG 58.811 52.381 13.11 0.00 0.00 2.69
115 116 4.843624 GCCTTAGGCCCTGTTTGT 57.156 55.556 13.12 0.00 44.06 2.83
116 117 3.051617 GCCTTAGGCCCTGTTTGTT 57.948 52.632 13.12 0.00 44.06 2.83
117 118 1.338107 GCCTTAGGCCCTGTTTGTTT 58.662 50.000 13.12 0.00 44.06 2.83
118 119 1.000843 GCCTTAGGCCCTGTTTGTTTG 59.999 52.381 13.12 0.00 44.06 2.93
119 120 2.593026 CCTTAGGCCCTGTTTGTTTGA 58.407 47.619 0.00 0.00 0.00 2.69
120 121 2.558359 CCTTAGGCCCTGTTTGTTTGAG 59.442 50.000 0.00 0.00 0.00 3.02
121 122 3.222603 CTTAGGCCCTGTTTGTTTGAGT 58.777 45.455 0.00 0.00 0.00 3.41
122 123 2.159179 AGGCCCTGTTTGTTTGAGTT 57.841 45.000 0.00 0.00 0.00 3.01
123 124 2.466846 AGGCCCTGTTTGTTTGAGTTT 58.533 42.857 0.00 0.00 0.00 2.66
124 125 2.430694 AGGCCCTGTTTGTTTGAGTTTC 59.569 45.455 0.00 0.00 0.00 2.78
125 126 2.167487 GGCCCTGTTTGTTTGAGTTTCA 59.833 45.455 0.00 0.00 0.00 2.69
126 127 3.447742 GCCCTGTTTGTTTGAGTTTCAG 58.552 45.455 0.00 0.00 0.00 3.02
127 128 3.737972 GCCCTGTTTGTTTGAGTTTCAGG 60.738 47.826 0.00 0.00 40.13 3.86
128 129 3.699038 CCCTGTTTGTTTGAGTTTCAGGA 59.301 43.478 9.47 0.00 42.16 3.86
129 130 4.159506 CCCTGTTTGTTTGAGTTTCAGGAA 59.840 41.667 9.47 0.00 42.16 3.36
130 131 5.102313 CCTGTTTGTTTGAGTTTCAGGAAC 58.898 41.667 0.00 0.00 42.16 3.62
131 132 5.066968 TGTTTGTTTGAGTTTCAGGAACC 57.933 39.130 0.00 0.00 39.13 3.62
132 133 4.524714 TGTTTGTTTGAGTTTCAGGAACCA 59.475 37.500 0.00 0.00 39.13 3.67
133 134 4.981806 TTGTTTGAGTTTCAGGAACCAG 57.018 40.909 0.00 0.00 39.13 4.00
134 135 4.229304 TGTTTGAGTTTCAGGAACCAGA 57.771 40.909 0.00 0.00 39.13 3.86
135 136 4.792068 TGTTTGAGTTTCAGGAACCAGAT 58.208 39.130 0.00 0.00 39.13 2.90
136 137 5.200483 TGTTTGAGTTTCAGGAACCAGATT 58.800 37.500 0.00 0.00 39.13 2.40
137 138 5.299279 TGTTTGAGTTTCAGGAACCAGATTC 59.701 40.000 0.00 0.00 39.13 2.52
138 139 4.705110 TGAGTTTCAGGAACCAGATTCA 57.295 40.909 0.00 0.00 39.30 2.57
139 140 5.047566 TGAGTTTCAGGAACCAGATTCAA 57.952 39.130 0.00 0.00 39.30 2.69
140 141 4.821805 TGAGTTTCAGGAACCAGATTCAAC 59.178 41.667 0.00 0.00 39.30 3.18
141 142 5.053978 AGTTTCAGGAACCAGATTCAACT 57.946 39.130 0.00 0.00 39.30 3.16
142 143 5.449553 AGTTTCAGGAACCAGATTCAACTT 58.550 37.500 0.00 0.00 39.30 2.66
143 144 5.893824 AGTTTCAGGAACCAGATTCAACTTT 59.106 36.000 0.00 0.00 39.30 2.66
144 145 5.772825 TTCAGGAACCAGATTCAACTTTG 57.227 39.130 0.00 0.00 39.30 2.77
145 146 4.792068 TCAGGAACCAGATTCAACTTTGT 58.208 39.130 0.00 0.00 39.30 2.83
146 147 4.821805 TCAGGAACCAGATTCAACTTTGTC 59.178 41.667 0.00 0.00 39.30 3.18
147 148 4.580167 CAGGAACCAGATTCAACTTTGTCA 59.420 41.667 0.00 0.00 39.30 3.58
148 149 4.823989 AGGAACCAGATTCAACTTTGTCAG 59.176 41.667 0.00 0.00 39.30 3.51
149 150 4.580580 GGAACCAGATTCAACTTTGTCAGT 59.419 41.667 0.00 0.00 39.30 3.41
150 151 5.505173 AACCAGATTCAACTTTGTCAGTG 57.495 39.130 0.00 0.00 35.12 3.66
151 152 4.780815 ACCAGATTCAACTTTGTCAGTGA 58.219 39.130 0.00 0.00 35.12 3.41
152 153 5.192927 ACCAGATTCAACTTTGTCAGTGAA 58.807 37.500 0.00 0.00 35.12 3.18
153 154 5.297776 ACCAGATTCAACTTTGTCAGTGAAG 59.702 40.000 0.00 0.00 35.12 3.02
154 155 5.210715 CAGATTCAACTTTGTCAGTGAAGC 58.789 41.667 0.00 0.00 35.12 3.86
155 156 5.008415 CAGATTCAACTTTGTCAGTGAAGCT 59.992 40.000 0.00 0.00 38.61 3.74
156 157 4.621068 TTCAACTTTGTCAGTGAAGCTG 57.379 40.909 0.00 0.00 46.34 4.24
170 171 5.802465 AGTGAAGCTGAATCTGAAATCTGA 58.198 37.500 0.00 0.00 0.00 3.27
171 172 6.236409 AGTGAAGCTGAATCTGAAATCTGAA 58.764 36.000 0.00 0.00 0.00 3.02
172 173 6.713903 AGTGAAGCTGAATCTGAAATCTGAAA 59.286 34.615 0.00 0.00 0.00 2.69
173 174 6.800892 GTGAAGCTGAATCTGAAATCTGAAAC 59.199 38.462 0.00 0.00 0.00 2.78
174 175 6.487668 TGAAGCTGAATCTGAAATCTGAAACA 59.512 34.615 0.00 0.00 0.00 2.83
175 176 6.889301 AGCTGAATCTGAAATCTGAAACAA 57.111 33.333 0.00 0.00 0.00 2.83
176 177 7.281040 AGCTGAATCTGAAATCTGAAACAAA 57.719 32.000 0.00 0.00 0.00 2.83
177 178 7.144000 AGCTGAATCTGAAATCTGAAACAAAC 58.856 34.615 0.00 0.00 0.00 2.93
178 179 6.919662 GCTGAATCTGAAATCTGAAACAAACA 59.080 34.615 0.00 0.00 0.00 2.83
179 180 7.436080 GCTGAATCTGAAATCTGAAACAAACAA 59.564 33.333 0.00 0.00 0.00 2.83
180 181 9.472361 CTGAATCTGAAATCTGAAACAAACAAT 57.528 29.630 0.00 0.00 0.00 2.71
181 182 9.820725 TGAATCTGAAATCTGAAACAAACAATT 57.179 25.926 0.00 0.00 0.00 2.32
196 197 6.515043 CAAACAATTGTTTCGAATCAGCTT 57.485 33.333 29.21 5.83 45.54 3.74
197 198 6.936374 CAAACAATTGTTTCGAATCAGCTTT 58.064 32.000 29.21 5.63 45.54 3.51
198 199 6.515043 AACAATTGTTTCGAATCAGCTTTG 57.485 33.333 18.13 17.77 33.93 2.77
199 200 4.445385 ACAATTGTTTCGAATCAGCTTTGC 59.555 37.500 4.92 0.00 0.00 3.68
200 201 3.988379 TTGTTTCGAATCAGCTTTGCT 57.012 38.095 8.79 0.00 40.77 3.91
201 202 5.627499 ATTGTTTCGAATCAGCTTTGCTA 57.373 34.783 8.79 0.00 36.40 3.49
202 203 4.668576 TGTTTCGAATCAGCTTTGCTAG 57.331 40.909 4.80 0.00 36.40 3.42
203 204 4.065088 TGTTTCGAATCAGCTTTGCTAGT 58.935 39.130 4.80 0.00 36.40 2.57
204 205 4.083855 TGTTTCGAATCAGCTTTGCTAGTG 60.084 41.667 4.80 0.00 36.40 2.74
205 206 3.592898 TCGAATCAGCTTTGCTAGTGA 57.407 42.857 0.00 0.00 36.40 3.41
206 207 3.925379 TCGAATCAGCTTTGCTAGTGAA 58.075 40.909 0.00 0.00 36.40 3.18
207 208 4.314961 TCGAATCAGCTTTGCTAGTGAAA 58.685 39.130 0.00 0.00 36.40 2.69
208 209 4.152402 TCGAATCAGCTTTGCTAGTGAAAC 59.848 41.667 0.00 0.00 36.40 2.78
225 226 6.808008 GTGAAACTGAATCTGGAATCTGAA 57.192 37.500 0.74 0.00 0.00 3.02
226 227 7.206981 GTGAAACTGAATCTGGAATCTGAAA 57.793 36.000 0.74 0.00 0.00 2.69
227 228 7.080724 GTGAAACTGAATCTGGAATCTGAAAC 58.919 38.462 0.74 0.00 0.00 2.78
228 229 6.772233 TGAAACTGAATCTGGAATCTGAAACA 59.228 34.615 0.74 0.00 0.00 2.83
229 230 7.285172 TGAAACTGAATCTGGAATCTGAAACAA 59.715 33.333 0.74 0.00 0.00 2.83
230 231 7.587037 AACTGAATCTGGAATCTGAAACAAA 57.413 32.000 0.74 0.00 0.00 2.83
231 232 7.771927 ACTGAATCTGGAATCTGAAACAAAT 57.228 32.000 0.74 0.00 0.00 2.32
232 233 8.868522 ACTGAATCTGGAATCTGAAACAAATA 57.131 30.769 0.74 0.00 0.00 1.40
233 234 8.954350 ACTGAATCTGGAATCTGAAACAAATAG 58.046 33.333 0.74 0.00 0.00 1.73
234 235 7.765307 TGAATCTGGAATCTGAAACAAATAGC 58.235 34.615 0.00 0.00 0.00 2.97
235 236 7.613022 TGAATCTGGAATCTGAAACAAATAGCT 59.387 33.333 0.00 0.00 0.00 3.32
236 237 9.113838 GAATCTGGAATCTGAAACAAATAGCTA 57.886 33.333 0.00 0.00 0.00 3.32
237 238 9.638176 AATCTGGAATCTGAAACAAATAGCTAT 57.362 29.630 0.00 0.00 0.00 2.97
238 239 9.638176 ATCTGGAATCTGAAACAAATAGCTATT 57.362 29.630 13.37 13.37 0.00 1.73
239 240 9.466497 TCTGGAATCTGAAACAAATAGCTATTT 57.534 29.630 23.22 23.22 36.39 1.40
240 241 9.727627 CTGGAATCTGAAACAAATAGCTATTTC 57.272 33.333 25.49 17.06 33.88 2.17
241 242 9.241919 TGGAATCTGAAACAAATAGCTATTTCA 57.758 29.630 25.49 20.13 38.42 2.69
248 249 9.357652 TGAAACAAATAGCTATTTCAAATCAGC 57.642 29.630 25.49 11.98 37.94 4.26
249 250 9.578439 GAAACAAATAGCTATTTCAAATCAGCT 57.422 29.630 25.49 14.60 45.87 4.24
250 251 9.933723 AAACAAATAGCTATTTCAAATCAGCTT 57.066 25.926 25.49 10.02 41.50 3.74
251 252 9.933723 AACAAATAGCTATTTCAAATCAGCTTT 57.066 25.926 25.49 1.91 41.50 3.51
252 253 9.362539 ACAAATAGCTATTTCAAATCAGCTTTG 57.637 29.630 25.49 15.02 41.50 2.77
253 254 7.998753 AATAGCTATTTCAAATCAGCTTTGC 57.001 32.000 13.37 0.00 41.50 3.68
254 255 4.752146 AGCTATTTCAAATCAGCTTTGCC 58.248 39.130 7.78 0.00 41.50 4.52
255 256 4.221262 AGCTATTTCAAATCAGCTTTGCCA 59.779 37.500 7.78 0.00 41.50 4.92
256 257 4.565564 GCTATTTCAAATCAGCTTTGCCAG 59.434 41.667 0.00 0.00 43.32 4.85
257 258 4.612264 ATTTCAAATCAGCTTTGCCAGT 57.388 36.364 0.00 0.00 43.32 4.00
258 259 3.374220 TTCAAATCAGCTTTGCCAGTG 57.626 42.857 0.00 0.00 43.32 3.66
259 260 2.585330 TCAAATCAGCTTTGCCAGTGA 58.415 42.857 0.00 0.00 43.32 3.41
260 261 2.957680 TCAAATCAGCTTTGCCAGTGAA 59.042 40.909 0.00 0.00 43.32 3.18
261 262 3.005050 TCAAATCAGCTTTGCCAGTGAAG 59.995 43.478 0.00 0.00 43.32 3.02
262 263 0.886563 ATCAGCTTTGCCAGTGAAGC 59.113 50.000 6.89 6.89 46.57 3.86
264 265 4.959446 GCTTTGCCAGTGAAGCTG 57.041 55.556 7.59 0.00 43.69 4.24
278 279 6.305272 AGTGAAGCTGAATCTAGATTTGGA 57.695 37.500 18.88 6.10 0.00 3.53
279 280 6.897986 AGTGAAGCTGAATCTAGATTTGGAT 58.102 36.000 18.88 10.70 0.00 3.41
280 281 6.991531 AGTGAAGCTGAATCTAGATTTGGATC 59.008 38.462 18.88 13.52 0.00 3.36
281 282 6.765036 GTGAAGCTGAATCTAGATTTGGATCA 59.235 38.462 18.88 15.52 34.60 2.92
282 283 6.765036 TGAAGCTGAATCTAGATTTGGATCAC 59.235 38.462 18.88 5.41 34.60 3.06
283 284 6.497624 AGCTGAATCTAGATTTGGATCACT 57.502 37.500 18.88 9.17 34.60 3.41
284 285 6.897986 AGCTGAATCTAGATTTGGATCACTT 58.102 36.000 18.88 0.00 34.60 3.16
285 286 7.344913 AGCTGAATCTAGATTTGGATCACTTT 58.655 34.615 18.88 0.00 34.60 2.66
286 287 7.833183 AGCTGAATCTAGATTTGGATCACTTTT 59.167 33.333 18.88 0.00 34.60 2.27
287 288 9.113838 GCTGAATCTAGATTTGGATCACTTTTA 57.886 33.333 18.88 0.00 34.60 1.52
291 292 7.849804 TCTAGATTTGGATCACTTTTAGTGC 57.150 36.000 1.98 0.00 45.54 4.40
292 293 7.394016 TCTAGATTTGGATCACTTTTAGTGCA 58.606 34.615 1.98 0.00 45.54 4.57
293 294 6.899393 AGATTTGGATCACTTTTAGTGCAA 57.101 33.333 1.98 0.00 45.54 4.08
294 295 7.472334 AGATTTGGATCACTTTTAGTGCAAT 57.528 32.000 1.98 0.00 45.54 3.56
295 296 7.899973 AGATTTGGATCACTTTTAGTGCAATT 58.100 30.769 0.00 0.00 45.54 2.32
296 297 8.370182 AGATTTGGATCACTTTTAGTGCAATTT 58.630 29.630 0.00 0.00 45.54 1.82
297 298 7.712264 TTTGGATCACTTTTAGTGCAATTTG 57.288 32.000 0.00 0.00 45.54 2.32
298 299 6.403866 TGGATCACTTTTAGTGCAATTTGT 57.596 33.333 0.00 0.00 45.54 2.83
299 300 6.815089 TGGATCACTTTTAGTGCAATTTGTT 58.185 32.000 0.00 0.00 45.54 2.83
300 301 6.700960 TGGATCACTTTTAGTGCAATTTGTTG 59.299 34.615 0.00 0.00 45.54 3.33
301 302 6.922957 GGATCACTTTTAGTGCAATTTGTTGA 59.077 34.615 0.00 0.00 45.54 3.18
302 303 7.437862 GGATCACTTTTAGTGCAATTTGTTGAA 59.562 33.333 0.00 0.00 45.54 2.69
303 304 7.754069 TCACTTTTAGTGCAATTTGTTGAAG 57.246 32.000 0.00 0.00 45.54 3.02
304 305 6.255453 TCACTTTTAGTGCAATTTGTTGAAGC 59.745 34.615 0.00 0.00 45.54 3.86
305 306 6.035866 CACTTTTAGTGCAATTTGTTGAAGCA 59.964 34.615 0.00 0.00 39.62 3.91
309 310 3.096489 TGCAATTTGTTGAAGCACCTC 57.904 42.857 0.00 0.00 0.00 3.85
310 311 2.429971 TGCAATTTGTTGAAGCACCTCA 59.570 40.909 0.00 0.00 0.00 3.86
311 312 3.118847 TGCAATTTGTTGAAGCACCTCAA 60.119 39.130 0.00 0.00 32.89 3.02
312 313 3.870419 GCAATTTGTTGAAGCACCTCAAA 59.130 39.130 0.00 0.00 37.08 2.69
313 314 4.025480 GCAATTTGTTGAAGCACCTCAAAG 60.025 41.667 0.00 0.00 37.08 2.77
314 315 5.111293 CAATTTGTTGAAGCACCTCAAAGT 58.889 37.500 0.00 0.00 37.08 2.66
315 316 3.781079 TTGTTGAAGCACCTCAAAGTG 57.219 42.857 0.00 0.00 37.08 3.16
316 317 2.722094 TGTTGAAGCACCTCAAAGTGT 58.278 42.857 0.00 0.00 40.04 3.55
317 318 3.879998 TGTTGAAGCACCTCAAAGTGTA 58.120 40.909 0.00 0.00 40.04 2.90
318 319 3.625764 TGTTGAAGCACCTCAAAGTGTAC 59.374 43.478 0.00 0.00 40.04 2.90
319 320 3.838244 TGAAGCACCTCAAAGTGTACT 57.162 42.857 0.00 0.00 40.04 2.73
320 321 4.150897 TGAAGCACCTCAAAGTGTACTT 57.849 40.909 0.00 0.00 40.04 2.24
321 322 4.127171 TGAAGCACCTCAAAGTGTACTTC 58.873 43.478 0.00 0.00 40.04 3.01
322 323 2.755650 AGCACCTCAAAGTGTACTTCG 58.244 47.619 0.00 0.00 40.04 3.79
323 324 1.798813 GCACCTCAAAGTGTACTTCGG 59.201 52.381 0.00 2.67 40.04 4.30
324 325 2.805657 GCACCTCAAAGTGTACTTCGGT 60.806 50.000 0.00 3.24 40.04 4.69
325 326 3.057734 CACCTCAAAGTGTACTTCGGTC 58.942 50.000 0.00 0.00 34.61 4.79
326 327 2.288030 ACCTCAAAGTGTACTTCGGTCG 60.288 50.000 0.00 0.00 34.61 4.79
327 328 1.719780 CTCAAAGTGTACTTCGGTCGC 59.280 52.381 0.00 0.00 34.61 5.19
328 329 0.788391 CAAAGTGTACTTCGGTCGCC 59.212 55.000 0.00 0.00 34.61 5.54
329 330 0.390124 AAAGTGTACTTCGGTCGCCA 59.610 50.000 0.00 0.00 34.61 5.69
330 331 0.390124 AAGTGTACTTCGGTCGCCAA 59.610 50.000 0.00 0.00 0.00 4.52
331 332 0.038526 AGTGTACTTCGGTCGCCAAG 60.039 55.000 0.00 2.84 0.00 3.61
332 333 1.373748 TGTACTTCGGTCGCCAAGC 60.374 57.895 0.00 0.00 0.00 4.01
333 334 1.080025 GTACTTCGGTCGCCAAGCT 60.080 57.895 0.00 0.00 0.00 3.74
334 335 1.080093 TACTTCGGTCGCCAAGCTG 60.080 57.895 0.00 0.00 0.00 4.24
335 336 1.529152 TACTTCGGTCGCCAAGCTGA 61.529 55.000 0.00 0.00 0.00 4.26
336 337 1.448540 CTTCGGTCGCCAAGCTGAT 60.449 57.895 0.00 0.00 0.00 2.90
337 338 1.003839 TTCGGTCGCCAAGCTGATT 60.004 52.632 0.00 0.00 0.00 2.57
338 339 0.605319 TTCGGTCGCCAAGCTGATTT 60.605 50.000 0.00 0.00 0.00 2.17
339 340 0.605319 TCGGTCGCCAAGCTGATTTT 60.605 50.000 0.00 0.00 0.00 1.82
340 341 0.454957 CGGTCGCCAAGCTGATTTTG 60.455 55.000 0.00 0.00 0.00 2.44
341 342 0.733909 GGTCGCCAAGCTGATTTTGC 60.734 55.000 0.00 0.00 0.00 3.68
342 343 1.067199 GTCGCCAAGCTGATTTTGCG 61.067 55.000 11.66 11.66 35.28 4.85
343 344 1.209898 CGCCAAGCTGATTTTGCGA 59.790 52.632 12.32 0.00 35.28 5.10
344 345 0.387112 CGCCAAGCTGATTTTGCGAA 60.387 50.000 12.32 0.00 35.28 4.70
345 346 1.733389 CGCCAAGCTGATTTTGCGAAT 60.733 47.619 12.32 0.00 35.28 3.34
346 347 1.922545 GCCAAGCTGATTTTGCGAATC 59.077 47.619 5.85 5.85 35.28 2.52
347 348 2.671914 GCCAAGCTGATTTTGCGAATCA 60.672 45.455 12.89 12.89 35.56 2.57
354 355 5.921784 CTGATTTTGCGAATCAGCTTTAC 57.078 39.130 22.08 0.00 44.67 2.01
355 356 4.732784 TGATTTTGCGAATCAGCTTTACC 58.267 39.130 10.30 0.00 38.13 2.85
356 357 4.217334 TGATTTTGCGAATCAGCTTTACCA 59.783 37.500 10.30 0.00 38.13 3.25
357 358 3.552604 TTTGCGAATCAGCTTTACCAC 57.447 42.857 0.00 0.00 38.13 4.16
358 359 2.472695 TGCGAATCAGCTTTACCACT 57.527 45.000 0.00 0.00 38.13 4.00
359 360 3.603158 TGCGAATCAGCTTTACCACTA 57.397 42.857 0.00 0.00 38.13 2.74
360 361 3.932822 TGCGAATCAGCTTTACCACTAA 58.067 40.909 0.00 0.00 38.13 2.24
361 362 4.320023 TGCGAATCAGCTTTACCACTAAA 58.680 39.130 0.00 0.00 38.13 1.85
362 363 4.391830 TGCGAATCAGCTTTACCACTAAAG 59.608 41.667 0.00 0.00 41.32 1.85
372 373 5.657474 CTTTACCACTAAAGCGGATCTACA 58.343 41.667 0.00 0.00 34.03 2.74
373 374 3.802948 ACCACTAAAGCGGATCTACAG 57.197 47.619 0.00 0.00 0.00 2.74
374 375 2.431057 ACCACTAAAGCGGATCTACAGG 59.569 50.000 0.00 0.00 0.00 4.00
375 376 2.431057 CCACTAAAGCGGATCTACAGGT 59.569 50.000 0.00 0.00 0.00 4.00
376 377 3.448686 CACTAAAGCGGATCTACAGGTG 58.551 50.000 0.00 0.00 0.00 4.00
377 378 3.130516 CACTAAAGCGGATCTACAGGTGA 59.869 47.826 0.00 0.00 0.00 4.02
378 379 2.969628 AAAGCGGATCTACAGGTGAG 57.030 50.000 0.00 0.00 0.00 3.51
379 380 1.853963 AAGCGGATCTACAGGTGAGT 58.146 50.000 0.00 0.00 0.00 3.41
380 381 1.394618 AGCGGATCTACAGGTGAGTC 58.605 55.000 0.00 0.00 0.00 3.36
381 382 0.029567 GCGGATCTACAGGTGAGTCG 59.970 60.000 0.00 0.00 0.00 4.18
382 383 1.664873 CGGATCTACAGGTGAGTCGA 58.335 55.000 0.00 0.00 0.00 4.20
383 384 2.014857 CGGATCTACAGGTGAGTCGAA 58.985 52.381 0.00 0.00 0.00 3.71
384 385 2.619177 CGGATCTACAGGTGAGTCGAAT 59.381 50.000 0.00 0.00 0.00 3.34
385 386 3.066900 CGGATCTACAGGTGAGTCGAATT 59.933 47.826 0.00 0.00 0.00 2.17
386 387 4.612943 GGATCTACAGGTGAGTCGAATTC 58.387 47.826 0.00 0.00 0.00 2.17
387 388 4.098044 GGATCTACAGGTGAGTCGAATTCA 59.902 45.833 6.22 0.00 0.00 2.57
388 389 5.394224 GGATCTACAGGTGAGTCGAATTCAA 60.394 44.000 6.22 0.00 0.00 2.69
389 390 5.661056 TCTACAGGTGAGTCGAATTCAAT 57.339 39.130 6.22 0.00 0.00 2.57
390 391 5.651530 TCTACAGGTGAGTCGAATTCAATC 58.348 41.667 6.22 2.74 0.00 2.67
391 392 4.271696 ACAGGTGAGTCGAATTCAATCA 57.728 40.909 6.22 5.26 0.00 2.57
392 393 4.641396 ACAGGTGAGTCGAATTCAATCAA 58.359 39.130 6.22 0.00 0.00 2.57
393 394 5.063204 ACAGGTGAGTCGAATTCAATCAAA 58.937 37.500 6.22 0.00 0.00 2.69
394 395 5.180117 ACAGGTGAGTCGAATTCAATCAAAG 59.820 40.000 6.22 4.53 0.00 2.77
395 396 4.154918 AGGTGAGTCGAATTCAATCAAAGC 59.845 41.667 6.22 0.00 0.00 3.51
396 397 4.154918 GGTGAGTCGAATTCAATCAAAGCT 59.845 41.667 6.22 0.00 0.00 3.74
397 398 5.084722 GTGAGTCGAATTCAATCAAAGCTG 58.915 41.667 6.22 0.00 0.00 4.24
398 399 4.154737 TGAGTCGAATTCAATCAAAGCTGG 59.845 41.667 6.22 0.00 0.00 4.85
399 400 4.326826 AGTCGAATTCAATCAAAGCTGGA 58.673 39.130 6.22 0.00 0.00 3.86
400 401 4.761739 AGTCGAATTCAATCAAAGCTGGAA 59.238 37.500 6.22 0.00 0.00 3.53
401 402 4.853743 GTCGAATTCAATCAAAGCTGGAAC 59.146 41.667 6.22 0.00 0.00 3.62
402 403 4.518590 TCGAATTCAATCAAAGCTGGAACA 59.481 37.500 6.22 0.00 0.00 3.18
403 404 5.009510 TCGAATTCAATCAAAGCTGGAACAA 59.990 36.000 6.22 0.00 38.70 2.83
404 405 5.691305 CGAATTCAATCAAAGCTGGAACAAA 59.309 36.000 6.22 0.00 38.70 2.83
405 406 6.346040 CGAATTCAATCAAAGCTGGAACAAAC 60.346 38.462 6.22 0.00 38.70 2.93
406 407 4.998671 TCAATCAAAGCTGGAACAAACA 57.001 36.364 0.00 0.00 38.70 2.83
407 408 5.534207 TCAATCAAAGCTGGAACAAACAT 57.466 34.783 0.00 0.00 38.70 2.71
408 409 5.291178 TCAATCAAAGCTGGAACAAACATG 58.709 37.500 0.00 0.00 38.70 3.21
409 410 5.068855 TCAATCAAAGCTGGAACAAACATGA 59.931 36.000 0.00 0.00 38.70 3.07
410 411 5.733620 ATCAAAGCTGGAACAAACATGAT 57.266 34.783 0.00 0.00 38.70 2.45
411 412 5.125100 TCAAAGCTGGAACAAACATGATC 57.875 39.130 0.00 0.00 38.70 2.92
412 413 4.828939 TCAAAGCTGGAACAAACATGATCT 59.171 37.500 0.00 0.00 38.70 2.75
413 414 5.302568 TCAAAGCTGGAACAAACATGATCTT 59.697 36.000 0.00 0.00 38.70 2.40
414 415 4.778534 AGCTGGAACAAACATGATCTTG 57.221 40.909 0.00 7.04 38.70 3.02
415 416 4.147321 AGCTGGAACAAACATGATCTTGT 58.853 39.130 8.37 8.37 38.70 3.16
416 417 5.316167 AGCTGGAACAAACATGATCTTGTA 58.684 37.500 14.07 0.00 38.70 2.41
417 418 5.948162 AGCTGGAACAAACATGATCTTGTAT 59.052 36.000 14.07 3.31 38.70 2.29
418 419 7.112122 AGCTGGAACAAACATGATCTTGTATA 58.888 34.615 14.07 0.00 38.70 1.47
419 420 7.611467 AGCTGGAACAAACATGATCTTGTATAA 59.389 33.333 14.07 0.00 38.70 0.98
420 421 7.698130 GCTGGAACAAACATGATCTTGTATAAC 59.302 37.037 14.07 6.14 38.70 1.89
421 422 8.862325 TGGAACAAACATGATCTTGTATAACT 57.138 30.769 14.07 0.00 34.71 2.24
422 423 8.729756 TGGAACAAACATGATCTTGTATAACTG 58.270 33.333 14.07 9.37 34.71 3.16
423 424 8.730680 GGAACAAACATGATCTTGTATAACTGT 58.269 33.333 14.07 9.88 34.71 3.55
424 425 9.546909 GAACAAACATGATCTTGTATAACTGTG 57.453 33.333 14.07 7.17 34.71 3.66
425 426 8.846943 ACAAACATGATCTTGTATAACTGTGA 57.153 30.769 14.07 0.00 34.04 3.58
426 427 9.283768 ACAAACATGATCTTGTATAACTGTGAA 57.716 29.630 14.07 0.00 34.04 3.18
429 430 9.671279 AACATGATCTTGTATAACTGTGAATCA 57.329 29.630 14.07 0.00 0.00 2.57
439 440 2.342910 CTGTGAATCAGCTTTGCCAC 57.657 50.000 0.00 0.00 37.36 5.01
440 441 1.884579 CTGTGAATCAGCTTTGCCACT 59.115 47.619 7.35 0.00 37.36 4.00
441 442 3.076621 CTGTGAATCAGCTTTGCCACTA 58.923 45.455 7.35 0.00 37.36 2.74
442 443 3.485394 TGTGAATCAGCTTTGCCACTAA 58.515 40.909 7.35 0.00 0.00 2.24
443 444 3.888323 TGTGAATCAGCTTTGCCACTAAA 59.112 39.130 7.35 0.00 0.00 1.85
444 445 4.022935 TGTGAATCAGCTTTGCCACTAAAG 60.023 41.667 7.35 0.00 39.95 1.85
445 446 4.022849 GTGAATCAGCTTTGCCACTAAAGT 60.023 41.667 0.00 0.00 39.33 2.66
446 447 4.022935 TGAATCAGCTTTGCCACTAAAGTG 60.023 41.667 3.02 3.02 45.23 3.16
461 462 6.893020 ACTAAAGTGAATCCCTAGGTGAAT 57.107 37.500 8.29 0.00 0.00 2.57
462 463 6.890293 ACTAAAGTGAATCCCTAGGTGAATC 58.110 40.000 8.29 8.03 0.00 2.52
463 464 4.408182 AAGTGAATCCCTAGGTGAATCG 57.592 45.455 8.29 0.00 0.00 3.34
464 465 3.643237 AGTGAATCCCTAGGTGAATCGA 58.357 45.455 8.29 0.00 0.00 3.59
465 466 4.030913 AGTGAATCCCTAGGTGAATCGAA 58.969 43.478 8.29 0.00 0.00 3.71
466 467 4.656112 AGTGAATCCCTAGGTGAATCGAAT 59.344 41.667 8.29 0.00 0.00 3.34
467 468 4.991687 GTGAATCCCTAGGTGAATCGAATC 59.008 45.833 8.29 0.00 0.00 2.52
468 469 4.653801 TGAATCCCTAGGTGAATCGAATCA 59.346 41.667 8.29 0.00 0.00 2.57
469 470 5.130311 TGAATCCCTAGGTGAATCGAATCAA 59.870 40.000 4.38 0.00 0.00 2.57
470 471 5.630415 ATCCCTAGGTGAATCGAATCAAA 57.370 39.130 4.38 0.00 0.00 2.69
471 472 5.630415 TCCCTAGGTGAATCGAATCAAAT 57.370 39.130 4.38 0.00 0.00 2.32
472 473 5.611374 TCCCTAGGTGAATCGAATCAAATC 58.389 41.667 4.38 0.00 0.00 2.17
473 474 5.130311 TCCCTAGGTGAATCGAATCAAATCA 59.870 40.000 4.38 0.00 0.00 2.57
474 475 5.822519 CCCTAGGTGAATCGAATCAAATCAA 59.177 40.000 4.38 0.00 0.00 2.57
475 476 6.318648 CCCTAGGTGAATCGAATCAAATCAAA 59.681 38.462 4.38 0.00 0.00 2.69
476 477 7.412853 CCTAGGTGAATCGAATCAAATCAAAG 58.587 38.462 4.38 0.00 0.00 2.77
477 478 5.644644 AGGTGAATCGAATCAAATCAAAGC 58.355 37.500 4.38 0.00 0.00 3.51
478 479 5.416952 AGGTGAATCGAATCAAATCAAAGCT 59.583 36.000 4.38 0.00 0.00 3.74
479 480 5.514204 GGTGAATCGAATCAAATCAAAGCTG 59.486 40.000 4.38 0.00 0.00 4.24
480 481 6.317088 GTGAATCGAATCAAATCAAAGCTGA 58.683 36.000 4.38 0.00 35.56 4.26
481 482 6.803320 GTGAATCGAATCAAATCAAAGCTGAA 59.197 34.615 4.38 0.00 34.49 3.02
482 483 7.326789 GTGAATCGAATCAAATCAAAGCTGAAA 59.673 33.333 4.38 0.00 34.49 2.69
483 484 7.326789 TGAATCGAATCAAATCAAAGCTGAAAC 59.673 33.333 0.00 0.00 34.49 2.78
484 485 6.070897 TCGAATCAAATCAAAGCTGAAACA 57.929 33.333 0.00 0.00 34.49 2.83
485 486 6.502652 TCGAATCAAATCAAAGCTGAAACAA 58.497 32.000 0.00 0.00 34.49 2.83
486 487 6.977502 TCGAATCAAATCAAAGCTGAAACAAA 59.022 30.769 0.00 0.00 34.49 2.83
487 488 7.043458 TCGAATCAAATCAAAGCTGAAACAAAC 60.043 33.333 0.00 0.00 34.49 2.93
488 489 7.254050 CGAATCAAATCAAAGCTGAAACAAACA 60.254 33.333 0.00 0.00 34.49 2.83
489 490 7.846644 ATCAAATCAAAGCTGAAACAAACAA 57.153 28.000 0.00 0.00 34.49 2.83
490 491 7.293402 TCAAATCAAAGCTGAAACAAACAAG 57.707 32.000 0.00 0.00 34.49 3.16
491 492 7.095910 TCAAATCAAAGCTGAAACAAACAAGA 58.904 30.769 0.00 0.00 34.49 3.02
492 493 6.892310 AATCAAAGCTGAAACAAACAAGAC 57.108 33.333 0.00 0.00 34.49 3.01
493 494 4.743493 TCAAAGCTGAAACAAACAAGACC 58.257 39.130 0.00 0.00 0.00 3.85
494 495 4.219507 TCAAAGCTGAAACAAACAAGACCA 59.780 37.500 0.00 0.00 0.00 4.02
581 583 6.348540 GGAAATGCTAGAAAAACTGACGTCAT 60.349 38.462 20.40 2.95 0.00 3.06
584 586 8.942338 AATGCTAGAAAAACTGACGTCATATA 57.058 30.769 20.40 4.49 0.00 0.86
593 595 7.715265 AAACTGACGTCATATATTTAGGCAG 57.285 36.000 20.40 4.86 0.00 4.85
594 596 5.784177 ACTGACGTCATATATTTAGGCAGG 58.216 41.667 20.40 4.39 0.00 4.85
670 672 4.438148 AGTTTGTAAGCACGGCAATTTTT 58.562 34.783 0.00 0.00 0.00 1.94
796 3802 9.599866 TTTCGGTCCTATAATTATGCATCTATG 57.400 33.333 0.19 0.00 0.00 2.23
868 3875 0.684535 GGAGGCTTAGATGCTCTCCC 59.315 60.000 10.69 0.00 40.89 4.30
874 3881 2.028203 GCTTAGATGCTCTCCCATCCTC 60.028 54.545 0.00 0.00 41.98 3.71
1023 4030 2.483714 GGCTGCCGTTAGAGATGAATCA 60.484 50.000 1.35 0.00 0.00 2.57
1047 4054 2.683859 CGACAGTAGCCGTCCGTCA 61.684 63.158 0.00 0.00 0.00 4.35
1347 4354 2.431057 CCTCTACTACGCCATGAAGGTT 59.569 50.000 0.00 0.00 40.61 3.50
1446 4453 3.399181 CCCTTCCTGCCCACGCTA 61.399 66.667 0.00 0.00 35.36 4.26
1518 4525 4.309950 GGCGGTGACCTCCACGTT 62.310 66.667 5.61 0.00 46.62 3.99
1590 4597 8.116026 AGGTATCAAATATCATTACCAATCCCC 58.884 37.037 0.00 0.00 35.76 4.81
1606 4613 3.717842 CCCCCGTTCAACTTCTTCA 57.282 52.632 0.00 0.00 0.00 3.02
1607 4614 2.200373 CCCCCGTTCAACTTCTTCAT 57.800 50.000 0.00 0.00 0.00 2.57
1608 4615 1.812571 CCCCCGTTCAACTTCTTCATG 59.187 52.381 0.00 0.00 0.00 3.07
1654 4661 0.667184 GCAAGCACCACCATTTTCCG 60.667 55.000 0.00 0.00 0.00 4.30
1660 4667 2.930455 GCACCACCATTTTCCGGATTTG 60.930 50.000 4.15 3.16 0.00 2.32
1661 4668 1.275010 ACCACCATTTTCCGGATTTGC 59.725 47.619 4.15 0.00 0.00 3.68
1662 4669 1.274728 CCACCATTTTCCGGATTTGCA 59.725 47.619 4.15 0.00 0.00 4.08
1663 4670 2.289320 CCACCATTTTCCGGATTTGCAA 60.289 45.455 4.15 0.00 0.00 4.08
1673 4687 3.257873 TCCGGATTTGCAACACATTGATT 59.742 39.130 0.00 0.00 38.15 2.57
1695 4709 2.165998 GAATATCCCATGGCCTGAAGC 58.834 52.381 6.09 0.00 42.60 3.86
1937 4967 1.002033 GGGCTAATGATTTGAGCTGCG 60.002 52.381 0.00 0.00 36.43 5.18
1938 4968 1.598924 GGCTAATGATTTGAGCTGCGC 60.599 52.381 0.00 0.00 36.43 6.09
1939 4969 1.918974 GCTAATGATTTGAGCTGCGCG 60.919 52.381 0.00 0.00 33.28 6.86
1940 4970 0.027979 TAATGATTTGAGCTGCGCGC 59.972 50.000 27.26 27.26 39.57 6.86
2246 5280 2.359975 CCAACCCGAGCTTGACCC 60.360 66.667 1.22 0.00 0.00 4.46
2266 5300 1.512996 ATGGTCACTCGTCGTCGTGT 61.513 55.000 13.97 4.02 43.04 4.49
2326 5360 2.180862 TGTAACACGCAAGCGCCAA 61.181 52.632 15.09 0.00 44.19 4.52
2338 5372 3.576356 CGCCAAGTGCCTATGCCG 61.576 66.667 0.00 0.00 36.24 5.69
2340 5374 2.589540 CCAAGTGCCTATGCCGGA 59.410 61.111 5.05 0.00 36.33 5.14
2344 5378 4.530857 GTGCCTATGCCGGACGCT 62.531 66.667 5.05 0.00 38.78 5.07
2422 5462 4.035102 GAGGTGGTGGTGGAGCCC 62.035 72.222 0.00 0.00 36.04 5.19
2675 5715 4.775977 AGCGGGAGGAGCTGCTCT 62.776 66.667 30.98 11.78 44.22 4.09
2905 5945 1.082104 GCCGTACAAGCAGCAACAC 60.082 57.895 0.00 0.00 0.00 3.32
2958 5998 6.413052 ACACCTTGTATTCTAGACTAGACGA 58.587 40.000 11.87 0.00 33.84 4.20
2994 6043 4.248058 AGCGGTGTACATAAAGTTGGTAC 58.752 43.478 0.00 0.00 38.25 3.34
2997 6046 4.628333 CGGTGTACATAAAGTTGGTACTGG 59.372 45.833 0.00 1.84 38.50 4.00
3011 6060 2.546789 GGTACTGGTTCCACAACGAAAG 59.453 50.000 0.00 0.00 32.68 2.62
3013 6062 2.561569 ACTGGTTCCACAACGAAAGAG 58.438 47.619 0.00 0.00 32.68 2.85
3016 6065 4.202326 ACTGGTTCCACAACGAAAGAGTAT 60.202 41.667 0.00 0.00 32.68 2.12
3017 6066 4.710324 TGGTTCCACAACGAAAGAGTATT 58.290 39.130 0.00 0.00 32.68 1.89
3032 6081 4.049186 AGAGTATTAGTTTGCATACGCCG 58.951 43.478 1.44 0.00 37.32 6.46
3039 6088 1.302383 TTTGCATACGCCGAACCAGG 61.302 55.000 0.00 0.00 37.32 4.45
3062 6111 2.043852 ACCGGAGATGGAGACGCT 60.044 61.111 9.46 0.00 0.00 5.07
3067 6116 1.323271 GGAGATGGAGACGCTGTGGA 61.323 60.000 0.00 0.00 0.00 4.02
3068 6117 0.102120 GAGATGGAGACGCTGTGGAG 59.898 60.000 0.00 0.00 0.00 3.86
3069 6118 1.142748 GATGGAGACGCTGTGGAGG 59.857 63.158 0.00 0.00 0.00 4.30
3070 6119 1.305297 ATGGAGACGCTGTGGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
3071 6120 1.326213 ATGGAGACGCTGTGGAGGAG 61.326 60.000 0.00 0.00 0.00 3.69
3072 6121 1.679305 GGAGACGCTGTGGAGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
3073 6122 1.251527 GGAGACGCTGTGGAGGAGAA 61.252 60.000 0.00 0.00 0.00 2.87
3074 6123 0.109039 GAGACGCTGTGGAGGAGAAC 60.109 60.000 0.00 0.00 0.00 3.01
3075 6124 0.827925 AGACGCTGTGGAGGAGAACA 60.828 55.000 0.00 0.00 0.00 3.18
3076 6125 0.389166 GACGCTGTGGAGGAGAACAG 60.389 60.000 0.00 0.00 45.37 3.16
3077 6126 0.827925 ACGCTGTGGAGGAGAACAGA 60.828 55.000 6.98 0.00 45.43 3.41
3085 6134 2.225394 TGGAGGAGAACAGAGCTAAGGT 60.225 50.000 0.00 0.00 0.00 3.50
3117 6166 0.106149 GCGACCCTAAATGATCCGGT 59.894 55.000 0.00 0.00 0.00 5.28
3155 6204 4.379243 CGGACAGAACAGGCCGCT 62.379 66.667 0.00 0.00 37.08 5.52
3196 6245 0.876399 TCATCGTCCGTTCTTCGTCA 59.124 50.000 0.00 0.00 37.94 4.35
3198 6247 0.879765 ATCGTCCGTTCTTCGTCAGT 59.120 50.000 0.00 0.00 37.94 3.41
3229 6278 0.185901 TCTTGGCCCAAAGTTGAGCT 59.814 50.000 0.00 0.00 32.00 4.09
3236 6285 1.606668 CCCAAAGTTGAGCTGCGTTTA 59.393 47.619 0.00 0.00 0.00 2.01
3240 6289 0.249741 AGTTGAGCTGCGTTTACGGT 60.250 50.000 4.29 0.00 40.23 4.83
3354 6431 4.778143 CCCAAACCTCTCCCGCCG 62.778 72.222 0.00 0.00 0.00 6.46
3355 6432 4.016706 CCAAACCTCTCCCGCCGT 62.017 66.667 0.00 0.00 0.00 5.68
3356 6433 2.434359 CAAACCTCTCCCGCCGTC 60.434 66.667 0.00 0.00 0.00 4.79
3357 6434 3.703127 AAACCTCTCCCGCCGTCC 61.703 66.667 0.00 0.00 0.00 4.79
3395 6472 4.447342 CACCTCCACCATGGCCCC 62.447 72.222 13.04 0.00 37.47 5.80
3484 6568 4.498520 CGCGGTCGGAGCTCACAT 62.499 66.667 17.19 0.00 0.00 3.21
3490 6574 1.743995 TCGGAGCTCACATCGTCGA 60.744 57.895 17.19 10.41 0.00 4.20
3497 6581 0.168348 CTCACATCGTCGAAGGTCGT 59.832 55.000 0.00 0.00 41.35 4.34
3506 6590 2.437343 CGAAGGTCGTCAAGCTCGC 61.437 63.158 0.00 0.00 33.60 5.03
3563 6648 0.251634 GACAAGGAGAGGAAGGCTGG 59.748 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.112341 ACTACCGCGACGCACCTC 62.112 66.667 21.35 0.00 0.00 3.85
5 6 4.415332 CACTACCGCGACGCACCT 62.415 66.667 21.35 3.31 0.00 4.00
9 10 4.203076 ATCCCACTACCGCGACGC 62.203 66.667 8.23 10.49 0.00 5.19
10 11 2.278596 CATCCCACTACCGCGACG 60.279 66.667 8.23 0.00 0.00 5.12
11 12 2.106332 CCATCCCACTACCGCGAC 59.894 66.667 8.23 0.00 0.00 5.19
12 13 3.151710 CCCATCCCACTACCGCGA 61.152 66.667 8.23 0.00 0.00 5.87
13 14 4.235762 CCCCATCCCACTACCGCG 62.236 72.222 0.00 0.00 0.00 6.46
14 15 1.917336 TTTCCCCATCCCACTACCGC 61.917 60.000 0.00 0.00 0.00 5.68
15 16 0.621609 TTTTCCCCATCCCACTACCG 59.378 55.000 0.00 0.00 0.00 4.02
16 17 1.639108 ACTTTTCCCCATCCCACTACC 59.361 52.381 0.00 0.00 0.00 3.18
17 18 4.579647 TTACTTTTCCCCATCCCACTAC 57.420 45.455 0.00 0.00 0.00 2.73
18 19 5.075344 ACTTTTACTTTTCCCCATCCCACTA 59.925 40.000 0.00 0.00 0.00 2.74
19 20 4.140782 ACTTTTACTTTTCCCCATCCCACT 60.141 41.667 0.00 0.00 0.00 4.00
20 21 4.021456 CACTTTTACTTTTCCCCATCCCAC 60.021 45.833 0.00 0.00 0.00 4.61
21 22 4.156477 CACTTTTACTTTTCCCCATCCCA 58.844 43.478 0.00 0.00 0.00 4.37
22 23 3.513912 CCACTTTTACTTTTCCCCATCCC 59.486 47.826 0.00 0.00 0.00 3.85
23 24 3.056107 GCCACTTTTACTTTTCCCCATCC 60.056 47.826 0.00 0.00 0.00 3.51
24 25 3.576550 TGCCACTTTTACTTTTCCCCATC 59.423 43.478 0.00 0.00 0.00 3.51
25 26 3.582164 TGCCACTTTTACTTTTCCCCAT 58.418 40.909 0.00 0.00 0.00 4.00
26 27 3.033659 TGCCACTTTTACTTTTCCCCA 57.966 42.857 0.00 0.00 0.00 4.96
27 28 3.244078 CCTTGCCACTTTTACTTTTCCCC 60.244 47.826 0.00 0.00 0.00 4.81
28 29 3.244078 CCCTTGCCACTTTTACTTTTCCC 60.244 47.826 0.00 0.00 0.00 3.97
29 30 3.639561 TCCCTTGCCACTTTTACTTTTCC 59.360 43.478 0.00 0.00 0.00 3.13
30 31 4.796290 GCTCCCTTGCCACTTTTACTTTTC 60.796 45.833 0.00 0.00 0.00 2.29
31 32 3.069586 GCTCCCTTGCCACTTTTACTTTT 59.930 43.478 0.00 0.00 0.00 2.27
32 33 2.628178 GCTCCCTTGCCACTTTTACTTT 59.372 45.455 0.00 0.00 0.00 2.66
33 34 2.239400 GCTCCCTTGCCACTTTTACTT 58.761 47.619 0.00 0.00 0.00 2.24
34 35 1.882352 CGCTCCCTTGCCACTTTTACT 60.882 52.381 0.00 0.00 0.00 2.24
35 36 0.521735 CGCTCCCTTGCCACTTTTAC 59.478 55.000 0.00 0.00 0.00 2.01
36 37 0.109723 ACGCTCCCTTGCCACTTTTA 59.890 50.000 0.00 0.00 0.00 1.52
37 38 0.109723 TACGCTCCCTTGCCACTTTT 59.890 50.000 0.00 0.00 0.00 2.27
38 39 0.321653 CTACGCTCCCTTGCCACTTT 60.322 55.000 0.00 0.00 0.00 2.66
39 40 1.296715 CTACGCTCCCTTGCCACTT 59.703 57.895 0.00 0.00 0.00 3.16
40 41 1.481056 AACTACGCTCCCTTGCCACT 61.481 55.000 0.00 0.00 0.00 4.00
41 42 0.605589 AAACTACGCTCCCTTGCCAC 60.606 55.000 0.00 0.00 0.00 5.01
42 43 0.321298 GAAACTACGCTCCCTTGCCA 60.321 55.000 0.00 0.00 0.00 4.92
43 44 0.321298 TGAAACTACGCTCCCTTGCC 60.321 55.000 0.00 0.00 0.00 4.52
44 45 1.519408 TTGAAACTACGCTCCCTTGC 58.481 50.000 0.00 0.00 0.00 4.01
45 46 3.058914 CAGTTTGAAACTACGCTCCCTTG 60.059 47.826 10.63 0.00 40.46 3.61
46 47 3.139077 CAGTTTGAAACTACGCTCCCTT 58.861 45.455 10.63 0.00 40.46 3.95
47 48 2.550208 CCAGTTTGAAACTACGCTCCCT 60.550 50.000 10.63 0.00 40.46 4.20
48 49 1.804748 CCAGTTTGAAACTACGCTCCC 59.195 52.381 10.63 0.00 40.46 4.30
49 50 1.197036 GCCAGTTTGAAACTACGCTCC 59.803 52.381 10.63 0.00 40.46 4.70
50 51 2.143925 AGCCAGTTTGAAACTACGCTC 58.856 47.619 20.00 6.20 40.35 5.03
51 52 2.256117 AGCCAGTTTGAAACTACGCT 57.744 45.000 20.00 20.00 40.46 5.07
52 53 2.159693 GCTAGCCAGTTTGAAACTACGC 60.160 50.000 10.63 14.49 40.46 4.42
53 54 2.415512 GGCTAGCCAGTTTGAAACTACG 59.584 50.000 29.33 5.20 40.46 3.51
54 55 3.676093 AGGCTAGCCAGTTTGAAACTAC 58.324 45.455 34.70 6.23 40.46 2.73
55 56 4.367039 AAGGCTAGCCAGTTTGAAACTA 57.633 40.909 34.70 0.00 40.46 2.24
56 57 2.959465 AGGCTAGCCAGTTTGAAACT 57.041 45.000 34.70 4.45 44.06 2.66
57 58 4.322080 AAAAGGCTAGCCAGTTTGAAAC 57.678 40.909 34.70 0.00 38.92 2.78
77 78 4.098807 GGCTACCCAGTTGTCTTTGAAAAA 59.901 41.667 0.00 0.00 0.00 1.94
78 79 3.634910 GGCTACCCAGTTGTCTTTGAAAA 59.365 43.478 0.00 0.00 0.00 2.29
79 80 3.117663 AGGCTACCCAGTTGTCTTTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
80 81 2.441750 AGGCTACCCAGTTGTCTTTGAA 59.558 45.455 0.00 0.00 0.00 2.69
81 82 2.054799 AGGCTACCCAGTTGTCTTTGA 58.945 47.619 0.00 0.00 0.00 2.69
82 83 2.568623 AGGCTACCCAGTTGTCTTTG 57.431 50.000 0.00 0.00 0.00 2.77
83 84 3.009143 CCTAAGGCTACCCAGTTGTCTTT 59.991 47.826 1.65 0.00 35.27 2.52
84 85 2.572104 CCTAAGGCTACCCAGTTGTCTT 59.428 50.000 1.96 1.96 37.11 3.01
85 86 2.188817 CCTAAGGCTACCCAGTTGTCT 58.811 52.381 0.00 0.00 0.00 3.41
86 87 1.407025 GCCTAAGGCTACCCAGTTGTC 60.407 57.143 0.00 0.00 46.69 3.18
87 88 0.618981 GCCTAAGGCTACCCAGTTGT 59.381 55.000 0.00 0.00 46.69 3.32
88 89 3.478540 GCCTAAGGCTACCCAGTTG 57.521 57.895 0.00 0.00 46.69 3.16
99 100 2.558359 CTCAAACAAACAGGGCCTAAGG 59.442 50.000 5.28 0.00 0.00 2.69
100 101 3.222603 ACTCAAACAAACAGGGCCTAAG 58.777 45.455 5.28 0.00 0.00 2.18
101 102 3.306472 ACTCAAACAAACAGGGCCTAA 57.694 42.857 5.28 0.00 0.00 2.69
102 103 3.306472 AACTCAAACAAACAGGGCCTA 57.694 42.857 5.28 0.00 0.00 3.93
103 104 2.159179 AACTCAAACAAACAGGGCCT 57.841 45.000 0.00 0.00 0.00 5.19
104 105 2.167487 TGAAACTCAAACAAACAGGGCC 59.833 45.455 0.00 0.00 0.00 5.80
105 106 3.447742 CTGAAACTCAAACAAACAGGGC 58.552 45.455 0.00 0.00 0.00 5.19
106 107 3.699038 TCCTGAAACTCAAACAAACAGGG 59.301 43.478 0.00 0.00 42.21 4.45
107 108 4.981806 TCCTGAAACTCAAACAAACAGG 57.018 40.909 0.00 0.00 42.97 4.00
108 109 5.102313 GGTTCCTGAAACTCAAACAAACAG 58.898 41.667 0.00 0.00 38.02 3.16
109 110 4.524714 TGGTTCCTGAAACTCAAACAAACA 59.475 37.500 0.00 0.00 38.02 2.83
110 111 5.066968 TGGTTCCTGAAACTCAAACAAAC 57.933 39.130 0.00 0.00 38.02 2.93
111 112 5.013547 TCTGGTTCCTGAAACTCAAACAAA 58.986 37.500 0.00 0.00 38.02 2.83
112 113 4.594970 TCTGGTTCCTGAAACTCAAACAA 58.405 39.130 0.00 0.00 38.02 2.83
113 114 4.229304 TCTGGTTCCTGAAACTCAAACA 57.771 40.909 0.00 0.00 38.02 2.83
114 115 5.299279 TGAATCTGGTTCCTGAAACTCAAAC 59.701 40.000 0.00 0.00 38.02 2.93
115 116 5.445069 TGAATCTGGTTCCTGAAACTCAAA 58.555 37.500 0.00 0.00 38.02 2.69
116 117 5.047566 TGAATCTGGTTCCTGAAACTCAA 57.952 39.130 0.00 0.00 38.02 3.02
117 118 4.705110 TGAATCTGGTTCCTGAAACTCA 57.295 40.909 0.00 4.26 38.02 3.41
118 119 5.066593 AGTTGAATCTGGTTCCTGAAACTC 58.933 41.667 0.00 2.15 38.02 3.01
119 120 5.053978 AGTTGAATCTGGTTCCTGAAACT 57.946 39.130 0.00 0.00 38.02 2.66
120 121 5.774498 AAGTTGAATCTGGTTCCTGAAAC 57.226 39.130 0.00 0.00 35.91 2.78
121 122 5.656416 ACAAAGTTGAATCTGGTTCCTGAAA 59.344 36.000 0.00 0.00 35.91 2.69
122 123 5.200483 ACAAAGTTGAATCTGGTTCCTGAA 58.800 37.500 0.00 0.00 35.91 3.02
123 124 4.792068 ACAAAGTTGAATCTGGTTCCTGA 58.208 39.130 0.00 1.19 35.91 3.86
124 125 4.580167 TGACAAAGTTGAATCTGGTTCCTG 59.420 41.667 0.00 0.00 35.91 3.86
125 126 4.792068 TGACAAAGTTGAATCTGGTTCCT 58.208 39.130 0.00 0.00 35.91 3.36
126 127 4.580580 ACTGACAAAGTTGAATCTGGTTCC 59.419 41.667 0.00 0.00 34.57 3.62
127 128 5.296780 TCACTGACAAAGTTGAATCTGGTTC 59.703 40.000 0.00 0.00 36.83 3.62
128 129 5.192927 TCACTGACAAAGTTGAATCTGGTT 58.807 37.500 0.00 0.00 36.83 3.67
129 130 4.780815 TCACTGACAAAGTTGAATCTGGT 58.219 39.130 0.00 0.00 36.83 4.00
130 131 5.755813 CTTCACTGACAAAGTTGAATCTGG 58.244 41.667 0.00 0.00 36.83 3.86
131 132 5.008415 AGCTTCACTGACAAAGTTGAATCTG 59.992 40.000 0.00 0.00 36.83 2.90
132 133 5.128919 AGCTTCACTGACAAAGTTGAATCT 58.871 37.500 0.00 0.00 36.83 2.40
133 134 5.429957 AGCTTCACTGACAAAGTTGAATC 57.570 39.130 0.00 0.00 36.83 2.52
147 148 5.802465 TCAGATTTCAGATTCAGCTTCACT 58.198 37.500 0.00 0.00 0.00 3.41
148 149 6.492007 TTCAGATTTCAGATTCAGCTTCAC 57.508 37.500 0.00 0.00 0.00 3.18
149 150 6.487668 TGTTTCAGATTTCAGATTCAGCTTCA 59.512 34.615 0.00 0.00 0.00 3.02
150 151 6.906659 TGTTTCAGATTTCAGATTCAGCTTC 58.093 36.000 0.00 0.00 0.00 3.86
151 152 6.889301 TGTTTCAGATTTCAGATTCAGCTT 57.111 33.333 0.00 0.00 0.00 3.74
152 153 6.889301 TTGTTTCAGATTTCAGATTCAGCT 57.111 33.333 0.00 0.00 0.00 4.24
153 154 6.919662 TGTTTGTTTCAGATTTCAGATTCAGC 59.080 34.615 0.00 0.00 0.00 4.26
154 155 8.861033 TTGTTTGTTTCAGATTTCAGATTCAG 57.139 30.769 0.00 0.00 0.00 3.02
155 156 9.820725 AATTGTTTGTTTCAGATTTCAGATTCA 57.179 25.926 0.00 0.00 0.00 2.57
157 158 9.603921 ACAATTGTTTGTTTCAGATTTCAGATT 57.396 25.926 4.92 0.00 43.57 2.40
174 175 8.583713 AGCAAAGCTGATTCGAAACAATTGTTT 61.584 33.333 31.40 31.40 43.50 2.83
175 176 5.050837 GCAAAGCTGATTCGAAACAATTGTT 60.051 36.000 18.13 18.13 40.50 2.83
176 177 4.445385 GCAAAGCTGATTCGAAACAATTGT 59.555 37.500 19.69 4.92 0.00 2.71
177 178 4.682860 AGCAAAGCTGATTCGAAACAATTG 59.317 37.500 9.52 14.10 37.57 2.32
178 179 4.874970 AGCAAAGCTGATTCGAAACAATT 58.125 34.783 9.52 4.89 37.57 2.32
179 180 4.510038 AGCAAAGCTGATTCGAAACAAT 57.490 36.364 9.52 0.00 37.57 2.71
180 181 3.988379 AGCAAAGCTGATTCGAAACAA 57.012 38.095 9.52 0.00 37.57 2.83
181 182 4.065088 ACTAGCAAAGCTGATTCGAAACA 58.935 39.130 7.93 7.93 40.10 2.83
182 183 4.152402 TCACTAGCAAAGCTGATTCGAAAC 59.848 41.667 0.00 0.00 40.10 2.78
183 184 4.314961 TCACTAGCAAAGCTGATTCGAAA 58.685 39.130 0.00 0.00 40.10 3.46
184 185 3.925379 TCACTAGCAAAGCTGATTCGAA 58.075 40.909 0.00 0.00 40.10 3.71
185 186 3.592898 TCACTAGCAAAGCTGATTCGA 57.407 42.857 1.04 0.00 40.10 3.71
186 187 4.153117 AGTTTCACTAGCAAAGCTGATTCG 59.847 41.667 1.04 0.00 40.10 3.34
187 188 5.180117 TCAGTTTCACTAGCAAAGCTGATTC 59.820 40.000 15.69 0.00 40.10 2.52
188 189 5.065914 TCAGTTTCACTAGCAAAGCTGATT 58.934 37.500 15.69 0.00 40.10 2.57
189 190 4.645535 TCAGTTTCACTAGCAAAGCTGAT 58.354 39.130 15.69 0.00 40.10 2.90
190 191 4.071961 TCAGTTTCACTAGCAAAGCTGA 57.928 40.909 15.69 15.69 40.10 4.26
191 192 4.818534 TTCAGTTTCACTAGCAAAGCTG 57.181 40.909 12.55 12.55 40.10 4.24
192 193 5.180868 CAGATTCAGTTTCACTAGCAAAGCT 59.819 40.000 0.00 0.00 43.41 3.74
193 194 5.388944 CAGATTCAGTTTCACTAGCAAAGC 58.611 41.667 0.00 0.00 0.00 3.51
194 195 5.702670 TCCAGATTCAGTTTCACTAGCAAAG 59.297 40.000 0.00 0.00 0.00 2.77
195 196 5.620206 TCCAGATTCAGTTTCACTAGCAAA 58.380 37.500 0.00 0.00 0.00 3.68
196 197 5.227569 TCCAGATTCAGTTTCACTAGCAA 57.772 39.130 0.00 0.00 0.00 3.91
197 198 4.890158 TCCAGATTCAGTTTCACTAGCA 57.110 40.909 0.00 0.00 0.00 3.49
198 199 6.036953 CAGATTCCAGATTCAGTTTCACTAGC 59.963 42.308 0.00 0.00 0.00 3.42
199 200 7.326454 TCAGATTCCAGATTCAGTTTCACTAG 58.674 38.462 0.00 0.00 0.00 2.57
200 201 7.244886 TCAGATTCCAGATTCAGTTTCACTA 57.755 36.000 0.00 0.00 0.00 2.74
201 202 6.119240 TCAGATTCCAGATTCAGTTTCACT 57.881 37.500 0.00 0.00 0.00 3.41
202 203 6.808008 TTCAGATTCCAGATTCAGTTTCAC 57.192 37.500 0.00 0.00 0.00 3.18
203 204 6.772233 TGTTTCAGATTCCAGATTCAGTTTCA 59.228 34.615 0.00 0.00 0.00 2.69
204 205 7.206981 TGTTTCAGATTCCAGATTCAGTTTC 57.793 36.000 0.00 0.00 0.00 2.78
205 206 7.587037 TTGTTTCAGATTCCAGATTCAGTTT 57.413 32.000 0.00 0.00 0.00 2.66
206 207 7.587037 TTTGTTTCAGATTCCAGATTCAGTT 57.413 32.000 0.00 0.00 0.00 3.16
207 208 7.771927 ATTTGTTTCAGATTCCAGATTCAGT 57.228 32.000 0.00 0.00 0.00 3.41
208 209 7.914346 GCTATTTGTTTCAGATTCCAGATTCAG 59.086 37.037 0.00 0.00 0.00 3.02
209 210 7.613022 AGCTATTTGTTTCAGATTCCAGATTCA 59.387 33.333 0.00 0.00 0.00 2.57
210 211 7.994194 AGCTATTTGTTTCAGATTCCAGATTC 58.006 34.615 0.00 0.00 0.00 2.52
211 212 7.951347 AGCTATTTGTTTCAGATTCCAGATT 57.049 32.000 0.00 0.00 0.00 2.40
212 213 9.638176 AATAGCTATTTGTTTCAGATTCCAGAT 57.362 29.630 13.37 0.00 0.00 2.90
213 214 9.466497 AAATAGCTATTTGTTTCAGATTCCAGA 57.534 29.630 27.01 0.00 34.79 3.86
214 215 9.727627 GAAATAGCTATTTGTTTCAGATTCCAG 57.272 33.333 31.37 0.00 36.13 3.86
215 216 9.241919 TGAAATAGCTATTTGTTTCAGATTCCA 57.758 29.630 31.37 17.22 36.11 3.53
222 223 9.357652 GCTGATTTGAAATAGCTATTTGTTTCA 57.642 29.630 31.37 24.04 38.41 2.69
223 224 9.578439 AGCTGATTTGAAATAGCTATTTGTTTC 57.422 29.630 31.37 19.96 44.10 2.78
224 225 9.933723 AAGCTGATTTGAAATAGCTATTTGTTT 57.066 25.926 31.37 17.66 45.09 2.83
225 226 9.933723 AAAGCTGATTTGAAATAGCTATTTGTT 57.066 25.926 31.37 12.20 45.09 2.83
241 242 2.288640 GCTTCACTGGCAAAGCTGATTT 60.289 45.455 13.71 0.00 43.57 2.17
242 243 1.271656 GCTTCACTGGCAAAGCTGATT 59.728 47.619 13.71 0.00 43.57 2.57
243 244 0.886563 GCTTCACTGGCAAAGCTGAT 59.113 50.000 13.71 0.00 43.57 2.90
244 245 2.334307 GCTTCACTGGCAAAGCTGA 58.666 52.632 13.71 0.00 43.57 4.26
245 246 4.959446 GCTTCACTGGCAAAGCTG 57.041 55.556 13.71 0.00 43.57 4.24
247 248 4.959446 CAGCTTCACTGGCAAAGC 57.041 55.556 13.23 13.23 46.52 3.51
255 256 6.305272 TCCAAATCTAGATTCAGCTTCACT 57.695 37.500 18.19 0.00 0.00 3.41
256 257 6.765036 TGATCCAAATCTAGATTCAGCTTCAC 59.235 38.462 18.19 6.64 32.75 3.18
257 258 6.765036 GTGATCCAAATCTAGATTCAGCTTCA 59.235 38.462 18.19 13.89 32.75 3.02
258 259 6.991531 AGTGATCCAAATCTAGATTCAGCTTC 59.008 38.462 18.19 11.83 32.75 3.86
259 260 6.897986 AGTGATCCAAATCTAGATTCAGCTT 58.102 36.000 18.19 0.00 32.75 3.74
260 261 6.497624 AGTGATCCAAATCTAGATTCAGCT 57.502 37.500 18.19 8.82 32.75 4.24
261 262 7.565323 AAAGTGATCCAAATCTAGATTCAGC 57.435 36.000 18.19 8.94 32.75 4.26
281 282 6.105333 TGCTTCAACAAATTGCACTAAAAGT 58.895 32.000 0.00 0.00 35.63 2.66
282 283 6.586868 TGCTTCAACAAATTGCACTAAAAG 57.413 33.333 0.00 0.00 35.63 2.27
289 290 2.429971 TGAGGTGCTTCAACAAATTGCA 59.570 40.909 0.00 0.00 35.63 4.08
290 291 3.096489 TGAGGTGCTTCAACAAATTGC 57.904 42.857 0.00 0.00 35.63 3.56
291 292 5.005971 CACTTTGAGGTGCTTCAACAAATTG 59.994 40.000 0.00 0.00 36.84 2.32
292 293 5.111293 CACTTTGAGGTGCTTCAACAAATT 58.889 37.500 0.00 0.00 36.84 1.82
293 294 4.160252 ACACTTTGAGGTGCTTCAACAAAT 59.840 37.500 0.00 0.00 40.52 2.32
294 295 3.509575 ACACTTTGAGGTGCTTCAACAAA 59.490 39.130 0.00 0.00 40.52 2.83
295 296 3.088532 ACACTTTGAGGTGCTTCAACAA 58.911 40.909 0.00 0.00 40.52 2.83
296 297 2.722094 ACACTTTGAGGTGCTTCAACA 58.278 42.857 0.00 0.00 40.52 3.33
297 298 3.877508 AGTACACTTTGAGGTGCTTCAAC 59.122 43.478 0.00 0.00 40.52 3.18
298 299 4.150897 AGTACACTTTGAGGTGCTTCAA 57.849 40.909 0.00 0.00 40.52 2.69
299 300 3.838244 AGTACACTTTGAGGTGCTTCA 57.162 42.857 0.00 0.00 40.52 3.02
300 301 3.184581 CGAAGTACACTTTGAGGTGCTTC 59.815 47.826 11.08 11.08 46.54 3.86
301 302 3.131396 CGAAGTACACTTTGAGGTGCTT 58.869 45.455 3.61 0.00 41.61 3.91
302 303 2.548067 CCGAAGTACACTTTGAGGTGCT 60.548 50.000 10.39 0.00 39.23 4.40
303 304 1.798813 CCGAAGTACACTTTGAGGTGC 59.201 52.381 10.39 0.00 39.23 5.01
304 305 3.057734 GACCGAAGTACACTTTGAGGTG 58.942 50.000 16.97 0.00 39.23 4.00
305 306 2.288030 CGACCGAAGTACACTTTGAGGT 60.288 50.000 10.39 12.36 39.23 3.85
306 307 2.325761 CGACCGAAGTACACTTTGAGG 58.674 52.381 10.39 9.77 39.23 3.86
307 308 1.719780 GCGACCGAAGTACACTTTGAG 59.280 52.381 10.39 4.27 39.23 3.02
308 309 1.603678 GGCGACCGAAGTACACTTTGA 60.604 52.381 10.39 0.00 39.23 2.69
309 310 0.788391 GGCGACCGAAGTACACTTTG 59.212 55.000 0.00 2.79 36.11 2.77
310 311 0.390124 TGGCGACCGAAGTACACTTT 59.610 50.000 0.00 0.00 36.11 2.66
311 312 0.390124 TTGGCGACCGAAGTACACTT 59.610 50.000 0.00 0.00 39.23 3.16
312 313 0.038526 CTTGGCGACCGAAGTACACT 60.039 55.000 0.00 0.00 0.00 3.55
313 314 1.623973 GCTTGGCGACCGAAGTACAC 61.624 60.000 0.00 0.00 0.00 2.90
314 315 1.373748 GCTTGGCGACCGAAGTACA 60.374 57.895 0.00 0.00 0.00 2.90
315 316 1.080025 AGCTTGGCGACCGAAGTAC 60.080 57.895 0.00 0.00 0.00 2.73
316 317 1.080093 CAGCTTGGCGACCGAAGTA 60.080 57.895 0.00 0.00 0.00 2.24
317 318 2.172483 ATCAGCTTGGCGACCGAAGT 62.172 55.000 0.00 0.00 0.00 3.01
318 319 1.021390 AATCAGCTTGGCGACCGAAG 61.021 55.000 0.00 0.00 0.00 3.79
319 320 0.605319 AAATCAGCTTGGCGACCGAA 60.605 50.000 0.00 0.00 0.00 4.30
320 321 0.605319 AAAATCAGCTTGGCGACCGA 60.605 50.000 0.00 0.00 0.00 4.69
321 322 0.454957 CAAAATCAGCTTGGCGACCG 60.455 55.000 0.00 0.00 0.00 4.79
322 323 0.733909 GCAAAATCAGCTTGGCGACC 60.734 55.000 0.00 0.00 0.00 4.79
323 324 1.067199 CGCAAAATCAGCTTGGCGAC 61.067 55.000 0.00 0.00 41.42 5.19
324 325 1.209898 CGCAAAATCAGCTTGGCGA 59.790 52.632 0.00 0.00 41.42 5.54
325 326 0.387112 TTCGCAAAATCAGCTTGGCG 60.387 50.000 0.00 0.00 40.71 5.69
326 327 1.922545 GATTCGCAAAATCAGCTTGGC 59.077 47.619 4.38 0.00 0.00 4.52
327 328 3.176708 CTGATTCGCAAAATCAGCTTGG 58.823 45.455 19.97 4.15 44.67 3.61
333 334 4.217334 TGGTAAAGCTGATTCGCAAAATCA 59.783 37.500 10.22 10.22 35.56 2.57
334 335 4.558860 GTGGTAAAGCTGATTCGCAAAATC 59.441 41.667 0.00 2.58 0.00 2.17
335 336 4.218417 AGTGGTAAAGCTGATTCGCAAAAT 59.782 37.500 0.00 0.00 0.00 1.82
336 337 3.568007 AGTGGTAAAGCTGATTCGCAAAA 59.432 39.130 0.00 0.00 0.00 2.44
337 338 3.146066 AGTGGTAAAGCTGATTCGCAAA 58.854 40.909 0.00 0.00 0.00 3.68
338 339 2.778299 AGTGGTAAAGCTGATTCGCAA 58.222 42.857 0.00 0.00 0.00 4.85
339 340 2.472695 AGTGGTAAAGCTGATTCGCA 57.527 45.000 0.00 0.00 0.00 5.10
340 341 4.898370 CTTTAGTGGTAAAGCTGATTCGC 58.102 43.478 0.00 0.00 38.98 4.70
349 350 5.657474 TGTAGATCCGCTTTAGTGGTAAAG 58.343 41.667 9.05 1.28 45.60 1.85
350 351 5.394883 CCTGTAGATCCGCTTTAGTGGTAAA 60.395 44.000 9.05 0.00 45.57 2.01
351 352 4.098960 CCTGTAGATCCGCTTTAGTGGTAA 59.901 45.833 9.05 0.00 45.57 2.85
352 353 3.635373 CCTGTAGATCCGCTTTAGTGGTA 59.365 47.826 9.05 0.00 45.57 3.25
353 354 2.431057 CCTGTAGATCCGCTTTAGTGGT 59.569 50.000 9.05 0.00 45.57 4.16
354 355 2.431057 ACCTGTAGATCCGCTTTAGTGG 59.569 50.000 2.87 2.87 46.72 4.00
355 356 3.130516 TCACCTGTAGATCCGCTTTAGTG 59.869 47.826 0.00 0.00 0.00 2.74
356 357 3.362706 TCACCTGTAGATCCGCTTTAGT 58.637 45.455 0.00 0.00 0.00 2.24
357 358 3.381908 ACTCACCTGTAGATCCGCTTTAG 59.618 47.826 0.00 0.00 0.00 1.85
358 359 3.362706 ACTCACCTGTAGATCCGCTTTA 58.637 45.455 0.00 0.00 0.00 1.85
359 360 2.166664 GACTCACCTGTAGATCCGCTTT 59.833 50.000 0.00 0.00 0.00 3.51
360 361 1.751924 GACTCACCTGTAGATCCGCTT 59.248 52.381 0.00 0.00 0.00 4.68
361 362 1.394618 GACTCACCTGTAGATCCGCT 58.605 55.000 0.00 0.00 0.00 5.52
362 363 0.029567 CGACTCACCTGTAGATCCGC 59.970 60.000 0.00 0.00 0.00 5.54
363 364 1.664873 TCGACTCACCTGTAGATCCG 58.335 55.000 0.00 0.00 0.00 4.18
364 365 4.098044 TGAATTCGACTCACCTGTAGATCC 59.902 45.833 0.04 0.00 0.00 3.36
365 366 5.250235 TGAATTCGACTCACCTGTAGATC 57.750 43.478 0.04 0.00 0.00 2.75
366 367 5.661056 TTGAATTCGACTCACCTGTAGAT 57.339 39.130 0.04 0.00 0.00 1.98
367 368 5.185056 TGATTGAATTCGACTCACCTGTAGA 59.815 40.000 0.00 0.00 0.00 2.59
368 369 5.410924 TGATTGAATTCGACTCACCTGTAG 58.589 41.667 0.00 0.00 0.00 2.74
369 370 5.400066 TGATTGAATTCGACTCACCTGTA 57.600 39.130 0.00 0.00 0.00 2.74
370 371 4.271696 TGATTGAATTCGACTCACCTGT 57.728 40.909 0.00 0.00 0.00 4.00
371 372 5.611796 TTTGATTGAATTCGACTCACCTG 57.388 39.130 0.00 0.00 0.00 4.00
372 373 4.154918 GCTTTGATTGAATTCGACTCACCT 59.845 41.667 0.00 0.00 0.00 4.00
373 374 4.154918 AGCTTTGATTGAATTCGACTCACC 59.845 41.667 0.00 0.00 0.00 4.02
374 375 5.084722 CAGCTTTGATTGAATTCGACTCAC 58.915 41.667 0.00 0.00 0.00 3.51
375 376 4.154737 CCAGCTTTGATTGAATTCGACTCA 59.845 41.667 0.00 0.00 0.00 3.41
376 377 4.393062 TCCAGCTTTGATTGAATTCGACTC 59.607 41.667 0.00 0.00 0.00 3.36
377 378 4.326826 TCCAGCTTTGATTGAATTCGACT 58.673 39.130 0.00 0.00 0.00 4.18
378 379 4.685169 TCCAGCTTTGATTGAATTCGAC 57.315 40.909 0.00 0.00 0.00 4.20
379 380 4.518590 TGTTCCAGCTTTGATTGAATTCGA 59.481 37.500 0.00 0.00 0.00 3.71
380 381 4.797471 TGTTCCAGCTTTGATTGAATTCG 58.203 39.130 0.04 0.00 0.00 3.34
381 382 6.479660 TGTTTGTTCCAGCTTTGATTGAATTC 59.520 34.615 0.00 0.00 0.00 2.17
382 383 6.347696 TGTTTGTTCCAGCTTTGATTGAATT 58.652 32.000 0.00 0.00 0.00 2.17
383 384 5.916318 TGTTTGTTCCAGCTTTGATTGAAT 58.084 33.333 0.00 0.00 0.00 2.57
384 385 5.336150 TGTTTGTTCCAGCTTTGATTGAA 57.664 34.783 0.00 0.00 0.00 2.69
385 386 4.998671 TGTTTGTTCCAGCTTTGATTGA 57.001 36.364 0.00 0.00 0.00 2.57
386 387 5.291178 TCATGTTTGTTCCAGCTTTGATTG 58.709 37.500 0.00 0.00 0.00 2.67
387 388 5.534207 TCATGTTTGTTCCAGCTTTGATT 57.466 34.783 0.00 0.00 0.00 2.57
388 389 5.479375 AGATCATGTTTGTTCCAGCTTTGAT 59.521 36.000 0.00 0.00 0.00 2.57
389 390 4.828939 AGATCATGTTTGTTCCAGCTTTGA 59.171 37.500 0.00 0.00 0.00 2.69
390 391 5.130292 AGATCATGTTTGTTCCAGCTTTG 57.870 39.130 0.00 0.00 0.00 2.77
391 392 5.069516 ACAAGATCATGTTTGTTCCAGCTTT 59.930 36.000 0.00 0.00 34.00 3.51
392 393 4.586001 ACAAGATCATGTTTGTTCCAGCTT 59.414 37.500 0.00 0.00 34.00 3.74
393 394 4.147321 ACAAGATCATGTTTGTTCCAGCT 58.853 39.130 0.00 0.00 34.00 4.24
394 395 4.510038 ACAAGATCATGTTTGTTCCAGC 57.490 40.909 0.00 0.00 34.00 4.85
395 396 8.950210 AGTTATACAAGATCATGTTTGTTCCAG 58.050 33.333 9.14 0.00 38.41 3.86
396 397 8.729756 CAGTTATACAAGATCATGTTTGTTCCA 58.270 33.333 9.14 0.00 38.41 3.53
397 398 8.730680 ACAGTTATACAAGATCATGTTTGTTCC 58.269 33.333 9.14 0.00 38.41 3.62
398 399 9.546909 CACAGTTATACAAGATCATGTTTGTTC 57.453 33.333 9.14 0.00 38.41 3.18
399 400 9.283768 TCACAGTTATACAAGATCATGTTTGTT 57.716 29.630 9.14 0.00 38.41 2.83
400 401 8.846943 TCACAGTTATACAAGATCATGTTTGT 57.153 30.769 9.14 6.12 40.39 2.83
403 404 9.671279 TGATTCACAGTTATACAAGATCATGTT 57.329 29.630 9.14 0.55 34.75 2.71
404 405 9.322773 CTGATTCACAGTTATACAAGATCATGT 57.677 33.333 8.84 8.84 41.30 3.21
421 422 1.985473 AGTGGCAAAGCTGATTCACA 58.015 45.000 11.36 0.00 0.00 3.58
422 423 4.022849 ACTTTAGTGGCAAAGCTGATTCAC 60.023 41.667 0.00 0.00 38.79 3.18
423 424 4.022935 CACTTTAGTGGCAAAGCTGATTCA 60.023 41.667 1.88 0.00 42.10 2.57
424 425 4.216257 TCACTTTAGTGGCAAAGCTGATTC 59.784 41.667 9.82 0.00 45.65 2.52
425 426 4.144297 TCACTTTAGTGGCAAAGCTGATT 58.856 39.130 9.82 0.00 45.65 2.57
426 427 3.754965 TCACTTTAGTGGCAAAGCTGAT 58.245 40.909 9.82 0.00 45.65 2.90
427 428 3.207265 TCACTTTAGTGGCAAAGCTGA 57.793 42.857 9.82 0.00 45.65 4.26
428 429 3.988379 TTCACTTTAGTGGCAAAGCTG 57.012 42.857 9.82 0.00 45.65 4.24
429 430 3.507622 GGATTCACTTTAGTGGCAAAGCT 59.492 43.478 9.82 0.00 45.65 3.74
430 431 3.367395 GGGATTCACTTTAGTGGCAAAGC 60.367 47.826 9.82 0.67 45.65 3.51
431 432 4.082125 AGGGATTCACTTTAGTGGCAAAG 58.918 43.478 9.82 0.00 45.65 2.77
432 433 4.112634 AGGGATTCACTTTAGTGGCAAA 57.887 40.909 9.82 0.00 45.65 3.68
433 434 3.806949 AGGGATTCACTTTAGTGGCAA 57.193 42.857 9.82 0.00 45.65 4.52
434 435 3.199946 CCTAGGGATTCACTTTAGTGGCA 59.800 47.826 9.82 0.00 45.65 4.92
435 436 3.200165 ACCTAGGGATTCACTTTAGTGGC 59.800 47.826 14.81 1.01 45.65 5.01
436 437 4.469945 TCACCTAGGGATTCACTTTAGTGG 59.530 45.833 14.81 0.00 45.65 4.00
437 438 5.677319 TCACCTAGGGATTCACTTTAGTG 57.323 43.478 14.81 3.47 46.91 2.74
438 439 6.407074 CGATTCACCTAGGGATTCACTTTAGT 60.407 42.308 14.81 0.00 0.00 2.24
439 440 5.986135 CGATTCACCTAGGGATTCACTTTAG 59.014 44.000 14.81 0.00 0.00 1.85
440 441 5.659525 TCGATTCACCTAGGGATTCACTTTA 59.340 40.000 14.81 0.00 0.00 1.85
441 442 4.469945 TCGATTCACCTAGGGATTCACTTT 59.530 41.667 14.81 0.00 0.00 2.66
442 443 4.030913 TCGATTCACCTAGGGATTCACTT 58.969 43.478 14.81 0.00 0.00 3.16
443 444 3.643237 TCGATTCACCTAGGGATTCACT 58.357 45.455 14.81 0.00 0.00 3.41
444 445 4.402056 TTCGATTCACCTAGGGATTCAC 57.598 45.455 14.81 0.00 0.00 3.18
445 446 4.653801 TGATTCGATTCACCTAGGGATTCA 59.346 41.667 14.81 8.54 0.00 2.57
446 447 5.215252 TGATTCGATTCACCTAGGGATTC 57.785 43.478 14.81 11.73 0.00 2.52
447 448 5.630415 TTGATTCGATTCACCTAGGGATT 57.370 39.130 14.81 4.19 0.00 3.01
448 449 5.630415 TTTGATTCGATTCACCTAGGGAT 57.370 39.130 14.81 3.90 0.00 3.85
449 450 5.130311 TGATTTGATTCGATTCACCTAGGGA 59.870 40.000 14.81 4.71 0.00 4.20
450 451 5.368145 TGATTTGATTCGATTCACCTAGGG 58.632 41.667 14.81 2.03 0.00 3.53
451 452 6.925610 TTGATTTGATTCGATTCACCTAGG 57.074 37.500 7.41 7.41 0.00 3.02
452 453 6.909357 GCTTTGATTTGATTCGATTCACCTAG 59.091 38.462 9.43 3.96 0.00 3.02
453 454 6.599244 AGCTTTGATTTGATTCGATTCACCTA 59.401 34.615 9.43 0.00 0.00 3.08
454 455 5.416952 AGCTTTGATTTGATTCGATTCACCT 59.583 36.000 9.43 0.67 0.00 4.00
455 456 5.514204 CAGCTTTGATTTGATTCGATTCACC 59.486 40.000 9.43 3.72 0.00 4.02
456 457 6.317088 TCAGCTTTGATTTGATTCGATTCAC 58.683 36.000 9.43 0.25 0.00 3.18
457 458 6.499234 TCAGCTTTGATTTGATTCGATTCA 57.501 33.333 5.92 5.92 0.00 2.57
458 459 7.326789 TGTTTCAGCTTTGATTTGATTCGATTC 59.673 33.333 0.29 0.29 0.00 2.52
459 460 7.147312 TGTTTCAGCTTTGATTTGATTCGATT 58.853 30.769 0.00 0.00 0.00 3.34
460 461 6.680810 TGTTTCAGCTTTGATTTGATTCGAT 58.319 32.000 0.00 0.00 0.00 3.59
461 462 6.070897 TGTTTCAGCTTTGATTTGATTCGA 57.929 33.333 0.00 0.00 0.00 3.71
462 463 6.752335 TTGTTTCAGCTTTGATTTGATTCG 57.248 33.333 0.00 0.00 0.00 3.34
463 464 7.908230 TGTTTGTTTCAGCTTTGATTTGATTC 58.092 30.769 0.00 0.00 0.00 2.52
464 465 7.846644 TGTTTGTTTCAGCTTTGATTTGATT 57.153 28.000 0.00 0.00 0.00 2.57
465 466 7.765360 TCTTGTTTGTTTCAGCTTTGATTTGAT 59.235 29.630 0.00 0.00 0.00 2.57
466 467 7.063308 GTCTTGTTTGTTTCAGCTTTGATTTGA 59.937 33.333 0.00 0.00 0.00 2.69
467 468 7.175410 GTCTTGTTTGTTTCAGCTTTGATTTG 58.825 34.615 0.00 0.00 0.00 2.32
468 469 6.313658 GGTCTTGTTTGTTTCAGCTTTGATTT 59.686 34.615 0.00 0.00 0.00 2.17
469 470 5.812127 GGTCTTGTTTGTTTCAGCTTTGATT 59.188 36.000 0.00 0.00 0.00 2.57
470 471 5.105392 TGGTCTTGTTTGTTTCAGCTTTGAT 60.105 36.000 0.00 0.00 0.00 2.57
471 472 4.219507 TGGTCTTGTTTGTTTCAGCTTTGA 59.780 37.500 0.00 0.00 0.00 2.69
472 473 4.493547 TGGTCTTGTTTGTTTCAGCTTTG 58.506 39.130 0.00 0.00 0.00 2.77
473 474 4.799564 TGGTCTTGTTTGTTTCAGCTTT 57.200 36.364 0.00 0.00 0.00 3.51
474 475 6.463995 TTATGGTCTTGTTTGTTTCAGCTT 57.536 33.333 0.00 0.00 0.00 3.74
475 476 6.294731 GGATTATGGTCTTGTTTGTTTCAGCT 60.295 38.462 0.00 0.00 0.00 4.24
476 477 5.863935 GGATTATGGTCTTGTTTGTTTCAGC 59.136 40.000 0.00 0.00 0.00 4.26
477 478 6.863126 GTGGATTATGGTCTTGTTTGTTTCAG 59.137 38.462 0.00 0.00 0.00 3.02
478 479 6.549364 AGTGGATTATGGTCTTGTTTGTTTCA 59.451 34.615 0.00 0.00 0.00 2.69
479 480 6.863126 CAGTGGATTATGGTCTTGTTTGTTTC 59.137 38.462 0.00 0.00 0.00 2.78
480 481 6.549364 TCAGTGGATTATGGTCTTGTTTGTTT 59.451 34.615 0.00 0.00 0.00 2.83
481 482 6.068010 TCAGTGGATTATGGTCTTGTTTGTT 58.932 36.000 0.00 0.00 0.00 2.83
482 483 5.630121 TCAGTGGATTATGGTCTTGTTTGT 58.370 37.500 0.00 0.00 0.00 2.83
483 484 6.151648 ACATCAGTGGATTATGGTCTTGTTTG 59.848 38.462 0.00 0.00 0.00 2.93
484 485 6.151648 CACATCAGTGGATTATGGTCTTGTTT 59.848 38.462 0.00 0.00 42.13 2.83
485 486 5.649395 CACATCAGTGGATTATGGTCTTGTT 59.351 40.000 0.00 0.00 42.13 2.83
486 487 5.045651 TCACATCAGTGGATTATGGTCTTGT 60.046 40.000 0.00 0.00 45.91 3.16
487 488 5.430886 TCACATCAGTGGATTATGGTCTTG 58.569 41.667 0.00 0.00 45.91 3.02
488 489 5.698741 TCACATCAGTGGATTATGGTCTT 57.301 39.130 0.00 0.00 45.91 3.01
489 490 5.367644 TCATCACATCAGTGGATTATGGTCT 59.632 40.000 0.00 0.00 45.91 3.85
490 491 5.614308 TCATCACATCAGTGGATTATGGTC 58.386 41.667 0.00 0.00 45.91 4.02
491 492 5.635278 TCATCACATCAGTGGATTATGGT 57.365 39.130 0.00 0.00 45.91 3.55
492 493 6.489022 ACAATCATCACATCAGTGGATTATGG 59.511 38.462 0.00 0.00 45.91 2.74
493 494 7.506328 ACAATCATCACATCAGTGGATTATG 57.494 36.000 0.00 0.00 45.91 1.90
494 495 7.469594 GCAACAATCATCACATCAGTGGATTAT 60.470 37.037 0.00 0.00 45.91 1.28
555 557 4.819630 ACGTCAGTTTTTCTAGCATTTCCA 59.180 37.500 0.00 0.00 0.00 3.53
566 568 8.609176 TGCCTAAATATATGACGTCAGTTTTTC 58.391 33.333 24.41 10.62 0.00 2.29
581 583 6.238897 CGTTTGATTTGCCCTGCCTAAATATA 60.239 38.462 0.00 0.00 0.00 0.86
584 586 3.368323 CGTTTGATTTGCCCTGCCTAAAT 60.368 43.478 0.00 0.00 0.00 1.40
593 595 4.319405 CCATGAAAAACGTTTGATTTGCCC 60.319 41.667 15.46 0.00 0.00 5.36
594 596 4.771360 CCATGAAAAACGTTTGATTTGCC 58.229 39.130 15.46 0.12 0.00 4.52
670 672 3.243367 CGCCTTGGTTCATTTCTTGTCAA 60.243 43.478 0.00 0.00 0.00 3.18
780 803 9.317936 CACACGGATACATAGATGCATAATTAT 57.682 33.333 0.00 0.00 0.00 1.28
796 3802 1.659098 CTTTTCGCTCCACACGGATAC 59.341 52.381 0.00 0.00 41.79 2.24
868 3875 0.095935 CACAAGCGCTTTCGAGGATG 59.904 55.000 22.51 10.15 38.10 3.51
874 3881 0.238289 AATCCACACAAGCGCTTTCG 59.762 50.000 22.51 16.81 39.07 3.46
908 3915 1.696884 TCTGTCATGTGTGGCCAGTTA 59.303 47.619 5.11 0.00 0.00 2.24
1317 4324 2.123428 GTAGTAGAGGCGCCCGGAA 61.123 63.158 26.15 3.00 0.00 4.30
1347 4354 3.923864 AGCGCGTCCTTGTCCACA 61.924 61.111 8.43 0.00 0.00 4.17
1446 4453 2.412112 GCCTCGAAGTCGGCGTAT 59.588 61.111 6.85 0.00 40.29 3.06
1506 4513 4.308458 CGGGCAACGTGGAGGTCA 62.308 66.667 0.00 0.00 37.93 4.02
1590 4597 1.879380 TGCATGAAGAAGTTGAACGGG 59.121 47.619 0.00 0.00 0.00 5.28
1654 4661 4.484236 TCGAATCAATGTGTTGCAAATCC 58.516 39.130 0.00 0.00 35.26 3.01
1660 4667 5.215160 GGGATATTCGAATCAATGTGTTGC 58.785 41.667 15.25 0.00 35.26 4.17
1661 4668 6.375945 TGGGATATTCGAATCAATGTGTTG 57.624 37.500 15.25 0.00 36.65 3.33
1662 4669 6.016024 CCATGGGATATTCGAATCAATGTGTT 60.016 38.462 15.25 0.00 0.00 3.32
1663 4670 5.474532 CCATGGGATATTCGAATCAATGTGT 59.525 40.000 15.25 0.00 0.00 3.72
1673 4687 1.728323 TCAGGCCATGGGATATTCGA 58.272 50.000 15.13 0.00 0.00 3.71
1695 4709 1.202031 GCTTTTCATCCCACGCGTAAG 60.202 52.381 13.44 10.78 43.44 2.34
2023 5057 2.052157 GCGTAGAATCTGCCGTACATC 58.948 52.381 0.00 0.00 0.00 3.06
2027 5061 1.357690 CCGCGTAGAATCTGCCGTA 59.642 57.895 4.92 0.00 0.00 4.02
2246 5280 1.065572 CACGACGACGAGTGACCATG 61.066 60.000 15.32 0.00 42.66 3.66
2326 5360 4.530857 GCGTCCGGCATAGGCACT 62.531 66.667 0.15 0.00 43.71 4.40
2675 5715 4.100084 CATGAGGTCCTGCGCCCA 62.100 66.667 4.18 0.00 0.00 5.36
2837 5877 3.058160 CTTGCTCCTTGCCACCGG 61.058 66.667 0.00 0.00 42.00 5.28
2838 5878 3.058160 CCTTGCTCCTTGCCACCG 61.058 66.667 0.00 0.00 42.00 4.94
2839 5879 3.376918 GCCTTGCTCCTTGCCACC 61.377 66.667 0.00 0.00 42.00 4.61
2840 5880 3.741476 CGCCTTGCTCCTTGCCAC 61.741 66.667 0.00 0.00 42.00 5.01
2883 5923 2.820037 GCTGCTTGTACGGCTCCC 60.820 66.667 11.05 0.00 38.96 4.30
2905 5945 3.505464 AAGTAGTCGAAATGGTCCTCG 57.495 47.619 0.00 0.00 36.39 4.63
2958 5998 1.144057 CCGCTTAATCCCGTCTGCT 59.856 57.895 0.00 0.00 0.00 4.24
2994 6043 2.561569 ACTCTTTCGTTGTGGAACCAG 58.438 47.619 0.00 0.00 34.36 4.00
2997 6046 7.417496 AACTAATACTCTTTCGTTGTGGAAC 57.583 36.000 0.00 0.00 37.35 3.62
3011 6060 4.046462 TCGGCGTATGCAAACTAATACTC 58.954 43.478 9.59 0.00 45.35 2.59
3013 6062 4.511734 GTTCGGCGTATGCAAACTAATAC 58.488 43.478 9.59 0.00 45.35 1.89
3016 6065 1.733360 GGTTCGGCGTATGCAAACTAA 59.267 47.619 18.39 1.10 45.35 2.24
3017 6066 1.337917 TGGTTCGGCGTATGCAAACTA 60.338 47.619 18.39 12.82 45.35 2.24
3032 6081 1.889530 CTCCGGTCAGGTCCTGGTTC 61.890 65.000 19.11 9.58 41.99 3.62
3039 6088 0.395862 TCTCCATCTCCGGTCAGGTC 60.396 60.000 0.00 0.00 41.99 3.85
3062 6111 2.604912 TAGCTCTGTTCTCCTCCACA 57.395 50.000 0.00 0.00 0.00 4.17
3067 6116 3.176924 TGACCTTAGCTCTGTTCTCCT 57.823 47.619 0.00 0.00 0.00 3.69
3068 6117 3.259625 AGTTGACCTTAGCTCTGTTCTCC 59.740 47.826 0.00 0.00 0.00 3.71
3069 6118 4.490743 GAGTTGACCTTAGCTCTGTTCTC 58.509 47.826 0.00 0.00 0.00 2.87
3070 6119 3.259625 GGAGTTGACCTTAGCTCTGTTCT 59.740 47.826 0.00 0.00 0.00 3.01
3071 6120 3.006967 TGGAGTTGACCTTAGCTCTGTTC 59.993 47.826 0.00 0.00 0.00 3.18
3072 6121 2.972713 TGGAGTTGACCTTAGCTCTGTT 59.027 45.455 0.00 0.00 0.00 3.16
3073 6122 2.609747 TGGAGTTGACCTTAGCTCTGT 58.390 47.619 0.00 0.00 0.00 3.41
3074 6123 3.330267 GTTGGAGTTGACCTTAGCTCTG 58.670 50.000 0.00 0.00 0.00 3.35
3075 6124 2.028930 CGTTGGAGTTGACCTTAGCTCT 60.029 50.000 0.00 0.00 0.00 4.09
3076 6125 2.338500 CGTTGGAGTTGACCTTAGCTC 58.662 52.381 0.00 0.00 0.00 4.09
3077 6126 1.608283 GCGTTGGAGTTGACCTTAGCT 60.608 52.381 0.00 0.00 0.00 3.32
3085 6134 3.033764 GTCGCGCGTTGGAGTTGA 61.034 61.111 30.98 3.31 0.00 3.18
3105 6154 0.249155 GGACGCGACCGGATCATTTA 60.249 55.000 15.93 0.00 39.22 1.40
3132 6181 0.788391 GCCTGTTCTGTCCGTTTACG 59.212 55.000 0.00 0.00 39.44 3.18
3229 6278 2.015627 CCGTTCGACCGTAAACGCA 61.016 57.895 0.61 0.00 45.12 5.24
3236 6285 2.353839 CGTTGTCCGTTCGACCGT 60.354 61.111 0.61 0.00 41.18 4.83
3315 6366 0.178990 AAGTGGAGGGAAAGTGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
3364 6441 3.462678 GGTGGAGAGGCGGGAGAC 61.463 72.222 0.00 0.00 39.17 3.36
3395 6472 4.635925 CGAGATTCATCGGGTCGG 57.364 61.111 0.00 0.00 39.04 4.79
3484 6568 1.081641 GCTTGACGACCTTCGACGA 60.082 57.895 1.94 0.00 43.74 4.20
3490 6574 2.048127 GGCGAGCTTGACGACCTT 60.048 61.111 4.70 0.00 32.13 3.50
3563 6648 3.264897 CGGTGGCATAGCTCGCAC 61.265 66.667 9.99 6.32 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.