Multiple sequence alignment - TraesCS3D01G128800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G128800 chr3D 100.000 5025 0 0 1 5025 87922633 87927657 0.000000e+00 9280.0
1 TraesCS3D01G128800 chr3D 85.174 344 29 10 3 328 87922005 87921666 2.900000e-87 333.0
2 TraesCS3D01G128800 chr3D 91.176 204 17 1 2543 2746 16171631 16171833 4.960000e-70 276.0
3 TraesCS3D01G128800 chr3D 95.620 137 4 2 3033 3168 283321117 283321252 8.470000e-53 219.0
4 TraesCS3D01G128800 chr3B 95.148 2741 57 15 337 3043 137321721 137324419 0.000000e+00 4255.0
5 TraesCS3D01G128800 chr3B 94.146 837 32 5 3528 4348 137324648 137325483 0.000000e+00 1258.0
6 TraesCS3D01G128800 chr3B 96.154 312 11 1 3 313 803005268 803005579 4.490000e-140 508.0
7 TraesCS3D01G128800 chr3B 84.884 344 32 7 3 328 803004518 803004177 3.750000e-86 329.0
8 TraesCS3D01G128800 chr3B 98.370 184 3 0 3164 3347 137324416 137324599 1.740000e-84 324.0
9 TraesCS3D01G128800 chr3B 89.272 261 11 7 4439 4692 137325600 137325850 1.360000e-80 311.0
10 TraesCS3D01G128800 chr3B 89.320 103 6 2 4415 4517 137325502 137325599 1.900000e-24 124.0
11 TraesCS3D01G128800 chr3A 94.400 2750 82 20 344 3043 104414140 104416867 0.000000e+00 4159.0
12 TraesCS3D01G128800 chr3A 91.203 1455 62 21 3528 4951 104417097 104418516 0.000000e+00 1917.0
13 TraesCS3D01G128800 chr3A 96.154 182 6 1 3164 3344 104416864 104417045 3.800000e-76 296.0
14 TraesCS3D01G128800 chr3A 92.432 185 13 1 3352 3536 600921031 600920848 3.860000e-66 263.0
15 TraesCS3D01G128800 chr3A 96.324 136 4 1 3035 3169 273747188 273747053 6.550000e-54 222.0
16 TraesCS3D01G128800 chr7A 94.412 340 15 3 1 336 675533081 675533420 2.070000e-143 520.0
17 TraesCS3D01G128800 chr7A 87.261 314 22 6 38 335 675532298 675531987 4.820000e-90 342.0
18 TraesCS3D01G128800 chr7A 95.050 202 6 4 131 328 24334582 24334381 1.050000e-81 315.0
19 TraesCS3D01G128800 chr7A 83.430 344 38 11 3 328 24335368 24335710 8.180000e-78 302.0
20 TraesCS3D01G128800 chr2A 94.554 202 7 4 131 328 678014197 678014398 4.890000e-80 309.0
21 TraesCS3D01G128800 chr2A 83.721 344 37 11 3 328 678013411 678013069 1.760000e-79 307.0
22 TraesCS3D01G128800 chr2A 95.070 142 4 3 3032 3171 735403306 735403166 2.360000e-53 220.0
23 TraesCS3D01G128800 chr6A 83.237 346 34 14 3 328 79328866 79328525 3.800000e-76 296.0
24 TraesCS3D01G128800 chr6A 92.135 178 11 2 154 328 79329657 79329834 1.080000e-61 248.0
25 TraesCS3D01G128800 chr5A 96.491 171 5 1 3364 3534 320214240 320214409 1.070000e-71 281.0
26 TraesCS3D01G128800 chr4D 95.930 172 5 2 3362 3532 386984663 386984833 1.380000e-70 278.0
27 TraesCS3D01G128800 chr4D 94.318 176 9 1 3366 3540 3590472 3590647 8.290000e-68 268.0
28 TraesCS3D01G128800 chr4D 95.000 140 6 1 3031 3169 448030810 448030949 8.470000e-53 219.0
29 TraesCS3D01G128800 chr4B 95.858 169 7 0 3367 3535 406389458 406389290 1.780000e-69 274.0
30 TraesCS3D01G128800 chr4B 95.322 171 6 2 3365 3535 532434999 532435167 2.310000e-68 270.0
31 TraesCS3D01G128800 chr4B 95.322 171 7 1 3359 3529 549841925 549841756 2.310000e-68 270.0
32 TraesCS3D01G128800 chr4B 80.172 116 20 3 219 331 123919379 123919264 3.220000e-12 84.2
33 TraesCS3D01G128800 chr4B 84.706 85 10 2 247 328 123920335 123920419 1.160000e-11 82.4
34 TraesCS3D01G128800 chr7B 93.889 180 10 1 3353 3532 490208165 490207987 2.310000e-68 270.0
35 TraesCS3D01G128800 chr2B 94.828 174 8 1 3356 3529 144406728 144406900 2.310000e-68 270.0
36 TraesCS3D01G128800 chr7D 96.324 136 4 1 3035 3169 181484821 181484956 6.550000e-54 222.0
37 TraesCS3D01G128800 chr5D 96.324 136 4 1 3035 3169 90184426 90184291 6.550000e-54 222.0
38 TraesCS3D01G128800 chr2D 96.324 136 4 1 3035 3169 420406165 420406030 6.550000e-54 222.0
39 TraesCS3D01G128800 chr2D 95.652 138 3 3 3032 3167 602705888 602705752 8.470000e-53 219.0
40 TraesCS3D01G128800 chr6B 95.000 140 6 1 3030 3168 659825845 659825984 8.470000e-53 219.0
41 TraesCS3D01G128800 chr5B 79.389 131 24 3 207 334 366005162 366005292 6.930000e-14 89.8
42 TraesCS3D01G128800 chr5B 80.342 117 20 3 219 332 214106428 214106312 8.960000e-13 86.1
43 TraesCS3D01G128800 chr5B 84.706 85 10 2 247 328 214107384 214107468 1.160000e-11 82.4
44 TraesCS3D01G128800 chr5B 83.529 85 11 2 247 328 366004249 366004165 5.390000e-10 76.8
45 TraesCS3D01G128800 chr4A 78.788 132 24 4 207 335 729827197 729827327 8.960000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G128800 chr3D 87922633 87927657 5024 False 9280.0 9280 100.0000 1 5025 1 chr3D.!!$F2 5024
1 TraesCS3D01G128800 chr3B 137321721 137325850 4129 False 1254.4 4255 93.2512 337 4692 5 chr3B.!!$F2 4355
2 TraesCS3D01G128800 chr3A 104414140 104418516 4376 False 2124.0 4159 93.9190 344 4951 3 chr3A.!!$F1 4607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.106769 TATGGGCCCGTACGTGTAGA 60.107 55.000 20.52 0.00 0.00 2.59 F
311 312 0.178990 AAGTCCCAGGAAAGGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57 F
313 314 0.690762 GTCCCAGGAAAGGTGTGCTA 59.309 55.000 0.00 0.00 0.00 3.49 F
1309 1344 1.078143 AGCTCCGCTTGTTGGGATC 60.078 57.895 0.00 0.00 33.89 3.36 F
2649 2704 0.179009 ACTGAAGCTGCTTCCTTGCA 60.179 50.000 32.70 17.66 39.51 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 1344 0.718904 TTGAATCCGTGAACGCATCG 59.281 50.000 0.00 0.0 38.18 3.84 R
1495 1534 2.230992 GCACACATGTTTATTGGGCAGA 59.769 45.455 0.00 0.0 39.59 4.26 R
1603 1644 2.549633 ATGTGCAAAGAAGCGTATGC 57.450 45.000 0.00 0.0 43.24 3.14 R
3039 3094 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.0 0.00 2.73 R
4519 4690 0.610174 TGCTGAAGCTCGAAGGACAT 59.390 50.000 3.61 0.0 42.66 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.841988 GAGGAGGCAGGGCGAGAT 60.842 66.667 0.00 0.00 0.00 2.75
19 20 3.160047 AGGAGGCAGGGCGAGATG 61.160 66.667 0.00 0.00 0.00 2.90
20 21 4.247380 GGAGGCAGGGCGAGATGG 62.247 72.222 0.00 0.00 0.00 3.51
21 22 4.925861 GAGGCAGGGCGAGATGGC 62.926 72.222 0.00 0.00 41.98 4.40
82 83 4.767255 GCAGGAGGCACGGTGAGG 62.767 72.222 13.29 0.00 43.97 3.86
83 84 4.767255 CAGGAGGCACGGTGAGGC 62.767 72.222 13.29 0.00 0.00 4.70
102 103 3.047877 GCGGCGCACTGGTTAGTT 61.048 61.111 29.21 0.00 34.07 2.24
103 104 3.023591 GCGGCGCACTGGTTAGTTC 62.024 63.158 29.21 0.00 34.07 3.01
104 105 2.726691 CGGCGCACTGGTTAGTTCG 61.727 63.158 10.83 0.00 44.61 3.95
105 106 1.666872 GGCGCACTGGTTAGTTCGT 60.667 57.895 10.83 0.00 43.86 3.85
106 107 1.623973 GGCGCACTGGTTAGTTCGTC 61.624 60.000 10.83 0.00 43.86 4.20
107 108 0.666577 GCGCACTGGTTAGTTCGTCT 60.667 55.000 0.30 0.00 43.86 4.18
108 109 1.337821 CGCACTGGTTAGTTCGTCTC 58.662 55.000 0.00 0.00 38.48 3.36
109 110 1.068472 CGCACTGGTTAGTTCGTCTCT 60.068 52.381 0.00 0.00 38.48 3.10
110 111 2.597520 GCACTGGTTAGTTCGTCTCTC 58.402 52.381 0.00 0.00 34.07 3.20
111 112 2.671632 GCACTGGTTAGTTCGTCTCTCC 60.672 54.545 0.00 0.00 34.07 3.71
112 113 1.811359 ACTGGTTAGTTCGTCTCTCCG 59.189 52.381 0.00 0.00 31.66 4.63
113 114 0.524862 TGGTTAGTTCGTCTCTCCGC 59.475 55.000 0.00 0.00 0.00 5.54
114 115 0.179142 GGTTAGTTCGTCTCTCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
115 116 0.810016 GTTAGTTCGTCTCTCCGCCT 59.190 55.000 0.00 0.00 0.00 5.52
116 117 1.093159 TTAGTTCGTCTCTCCGCCTC 58.907 55.000 0.00 0.00 0.00 4.70
117 118 0.747283 TAGTTCGTCTCTCCGCCTCC 60.747 60.000 0.00 0.00 0.00 4.30
118 119 2.047443 GTTCGTCTCTCCGCCTCCT 61.047 63.158 0.00 0.00 0.00 3.69
119 120 2.046864 TTCGTCTCTCCGCCTCCTG 61.047 63.158 0.00 0.00 0.00 3.86
120 121 2.752238 CGTCTCTCCGCCTCCTGT 60.752 66.667 0.00 0.00 0.00 4.00
121 122 2.888863 GTCTCTCCGCCTCCTGTG 59.111 66.667 0.00 0.00 0.00 3.66
122 123 3.071206 TCTCTCCGCCTCCTGTGC 61.071 66.667 0.00 0.00 0.00 4.57
123 124 3.073735 CTCTCCGCCTCCTGTGCT 61.074 66.667 0.00 0.00 0.00 4.40
124 125 3.071206 TCTCCGCCTCCTGTGCTC 61.071 66.667 0.00 0.00 0.00 4.26
125 126 3.073735 CTCCGCCTCCTGTGCTCT 61.074 66.667 0.00 0.00 0.00 4.09
126 127 2.604686 TCCGCCTCCTGTGCTCTT 60.605 61.111 0.00 0.00 0.00 2.85
127 128 2.177594 CTCCGCCTCCTGTGCTCTTT 62.178 60.000 0.00 0.00 0.00 2.52
128 129 2.037136 CCGCCTCCTGTGCTCTTTG 61.037 63.158 0.00 0.00 0.00 2.77
129 130 1.004560 CGCCTCCTGTGCTCTTTGA 60.005 57.895 0.00 0.00 0.00 2.69
130 131 0.392193 CGCCTCCTGTGCTCTTTGAT 60.392 55.000 0.00 0.00 0.00 2.57
131 132 1.377536 GCCTCCTGTGCTCTTTGATC 58.622 55.000 0.00 0.00 0.00 2.92
132 133 1.649664 CCTCCTGTGCTCTTTGATCG 58.350 55.000 0.00 0.00 0.00 3.69
133 134 1.066573 CCTCCTGTGCTCTTTGATCGT 60.067 52.381 0.00 0.00 0.00 3.73
134 135 2.613977 CCTCCTGTGCTCTTTGATCGTT 60.614 50.000 0.00 0.00 0.00 3.85
135 136 3.070018 CTCCTGTGCTCTTTGATCGTTT 58.930 45.455 0.00 0.00 0.00 3.60
136 137 3.067106 TCCTGTGCTCTTTGATCGTTTC 58.933 45.455 0.00 0.00 0.00 2.78
137 138 2.159787 CCTGTGCTCTTTGATCGTTTCG 60.160 50.000 0.00 0.00 0.00 3.46
138 139 2.731451 CTGTGCTCTTTGATCGTTTCGA 59.269 45.455 0.00 0.00 41.13 3.71
148 149 2.933495 ATCGTTTCGATCGACCAGAA 57.067 45.000 19.26 6.59 43.45 3.02
149 150 1.973138 TCGTTTCGATCGACCAGAAC 58.027 50.000 19.26 17.70 32.30 3.01
150 151 0.989890 CGTTTCGATCGACCAGAACC 59.010 55.000 19.26 3.96 0.00 3.62
151 152 1.667756 CGTTTCGATCGACCAGAACCA 60.668 52.381 19.26 0.00 0.00 3.67
152 153 1.993370 GTTTCGATCGACCAGAACCAG 59.007 52.381 19.26 0.00 0.00 4.00
153 154 0.530744 TTCGATCGACCAGAACCAGG 59.469 55.000 19.26 0.00 0.00 4.45
154 155 1.141881 CGATCGACCAGAACCAGGG 59.858 63.158 10.26 0.00 0.00 4.45
155 156 1.522569 GATCGACCAGAACCAGGGG 59.477 63.158 0.00 0.00 0.00 4.79
156 157 2.595009 GATCGACCAGAACCAGGGGC 62.595 65.000 0.00 0.00 0.00 5.80
157 158 3.636231 CGACCAGAACCAGGGGCA 61.636 66.667 0.00 0.00 30.28 5.36
158 159 2.843545 GACCAGAACCAGGGGCAA 59.156 61.111 0.00 0.00 30.28 4.52
159 160 1.384191 GACCAGAACCAGGGGCAAT 59.616 57.895 0.00 0.00 30.28 3.56
160 161 0.251787 GACCAGAACCAGGGGCAATT 60.252 55.000 0.00 0.00 30.28 2.32
161 162 0.190815 ACCAGAACCAGGGGCAATTT 59.809 50.000 0.00 0.00 0.00 1.82
162 163 0.897621 CCAGAACCAGGGGCAATTTC 59.102 55.000 0.00 0.00 0.00 2.17
163 164 0.527565 CAGAACCAGGGGCAATTTCG 59.472 55.000 0.00 0.00 0.00 3.46
164 165 0.112412 AGAACCAGGGGCAATTTCGT 59.888 50.000 0.00 0.00 0.00 3.85
165 166 0.526211 GAACCAGGGGCAATTTCGTC 59.474 55.000 0.00 0.00 0.00 4.20
166 167 0.898326 AACCAGGGGCAATTTCGTCC 60.898 55.000 0.00 0.00 0.00 4.79
167 168 1.000896 CCAGGGGCAATTTCGTCCT 60.001 57.895 0.00 0.00 0.00 3.85
168 169 0.254747 CCAGGGGCAATTTCGTCCTA 59.745 55.000 0.00 0.00 0.00 2.94
169 170 1.133792 CCAGGGGCAATTTCGTCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
170 171 2.105821 CCAGGGGCAATTTCGTCCTATA 59.894 50.000 0.00 0.00 0.00 1.31
171 172 3.434453 CCAGGGGCAATTTCGTCCTATAA 60.434 47.826 0.00 0.00 0.00 0.98
172 173 4.204012 CAGGGGCAATTTCGTCCTATAAA 58.796 43.478 0.00 0.00 0.00 1.40
173 174 4.642885 CAGGGGCAATTTCGTCCTATAAAA 59.357 41.667 0.00 0.00 0.00 1.52
174 175 5.301805 CAGGGGCAATTTCGTCCTATAAAAT 59.698 40.000 0.00 0.00 0.00 1.82
175 176 6.488683 CAGGGGCAATTTCGTCCTATAAAATA 59.511 38.462 0.00 0.00 0.00 1.40
176 177 7.176690 CAGGGGCAATTTCGTCCTATAAAATAT 59.823 37.037 0.00 0.00 0.00 1.28
177 178 7.176690 AGGGGCAATTTCGTCCTATAAAATATG 59.823 37.037 0.00 0.00 0.00 1.78
178 179 7.039993 GGGGCAATTTCGTCCTATAAAATATGT 60.040 37.037 0.00 0.00 0.00 2.29
179 180 8.021396 GGGCAATTTCGTCCTATAAAATATGTC 58.979 37.037 0.00 0.00 0.00 3.06
180 181 8.564574 GGCAATTTCGTCCTATAAAATATGTCA 58.435 33.333 0.00 0.00 0.00 3.58
186 187 9.884636 TTCGTCCTATAAAATATGTCATATGGG 57.115 33.333 6.10 0.00 0.00 4.00
187 188 7.985184 TCGTCCTATAAAATATGTCATATGGGC 59.015 37.037 6.10 3.17 0.00 5.36
188 189 7.226720 CGTCCTATAAAATATGTCATATGGGCC 59.773 40.741 6.10 0.00 0.00 5.80
189 190 7.502561 GTCCTATAAAATATGTCATATGGGCCC 59.497 40.741 17.59 17.59 0.00 5.80
190 191 6.486657 CCTATAAAATATGTCATATGGGCCCG 59.513 42.308 19.37 1.86 0.00 6.13
191 192 3.806949 AAATATGTCATATGGGCCCGT 57.193 42.857 23.08 23.08 0.00 5.28
192 193 4.919774 AAATATGTCATATGGGCCCGTA 57.080 40.909 26.19 26.19 0.00 4.02
193 194 3.906720 ATATGTCATATGGGCCCGTAC 57.093 47.619 26.52 16.84 0.00 3.67
194 195 0.320374 ATGTCATATGGGCCCGTACG 59.680 55.000 26.52 18.90 0.00 3.67
195 196 1.044231 TGTCATATGGGCCCGTACGT 61.044 55.000 26.52 8.72 0.00 3.57
196 197 0.599204 GTCATATGGGCCCGTACGTG 60.599 60.000 26.52 20.55 0.00 4.49
197 198 1.044231 TCATATGGGCCCGTACGTGT 61.044 55.000 26.52 7.50 0.00 4.49
198 199 0.675083 CATATGGGCCCGTACGTGTA 59.325 55.000 26.52 4.90 0.00 2.90
199 200 0.963962 ATATGGGCCCGTACGTGTAG 59.036 55.000 26.52 0.00 0.00 2.74
200 201 0.106769 TATGGGCCCGTACGTGTAGA 60.107 55.000 20.52 0.00 0.00 2.59
201 202 0.971959 ATGGGCCCGTACGTGTAGAA 60.972 55.000 17.34 0.00 0.00 2.10
202 203 1.140375 GGGCCCGTACGTGTAGAAG 59.860 63.158 5.69 0.00 0.00 2.85
203 204 1.598701 GGGCCCGTACGTGTAGAAGT 61.599 60.000 5.69 0.00 0.00 3.01
204 205 1.094785 GGCCCGTACGTGTAGAAGTA 58.905 55.000 15.21 0.00 0.00 2.24
205 206 1.064654 GGCCCGTACGTGTAGAAGTAG 59.935 57.143 15.21 0.00 0.00 2.57
206 207 1.064654 GCCCGTACGTGTAGAAGTAGG 59.935 57.143 15.21 5.04 0.00 3.18
207 208 2.632377 CCCGTACGTGTAGAAGTAGGA 58.368 52.381 15.21 0.00 32.37 2.94
208 209 3.009723 CCCGTACGTGTAGAAGTAGGAA 58.990 50.000 15.21 0.00 32.37 3.36
209 210 3.440173 CCCGTACGTGTAGAAGTAGGAAA 59.560 47.826 15.21 0.00 32.37 3.13
210 211 4.082787 CCCGTACGTGTAGAAGTAGGAAAA 60.083 45.833 15.21 0.00 32.37 2.29
211 212 5.460646 CCGTACGTGTAGAAGTAGGAAAAA 58.539 41.667 15.21 0.00 32.37 1.94
212 213 5.570589 CCGTACGTGTAGAAGTAGGAAAAAG 59.429 44.000 15.21 0.00 32.37 2.27
213 214 5.570589 CGTACGTGTAGAAGTAGGAAAAAGG 59.429 44.000 7.22 0.00 32.37 3.11
214 215 5.541953 ACGTGTAGAAGTAGGAAAAAGGT 57.458 39.130 0.00 0.00 0.00 3.50
215 216 6.655078 ACGTGTAGAAGTAGGAAAAAGGTA 57.345 37.500 0.00 0.00 0.00 3.08
216 217 6.685657 ACGTGTAGAAGTAGGAAAAAGGTAG 58.314 40.000 0.00 0.00 0.00 3.18
217 218 6.491403 ACGTGTAGAAGTAGGAAAAAGGTAGA 59.509 38.462 0.00 0.00 0.00 2.59
218 219 7.178097 ACGTGTAGAAGTAGGAAAAAGGTAGAT 59.822 37.037 0.00 0.00 0.00 1.98
219 220 8.033626 CGTGTAGAAGTAGGAAAAAGGTAGATT 58.966 37.037 0.00 0.00 0.00 2.40
220 221 9.722184 GTGTAGAAGTAGGAAAAAGGTAGATTT 57.278 33.333 0.00 0.00 0.00 2.17
221 222 9.720769 TGTAGAAGTAGGAAAAAGGTAGATTTG 57.279 33.333 0.00 0.00 0.00 2.32
222 223 9.722184 GTAGAAGTAGGAAAAAGGTAGATTTGT 57.278 33.333 0.00 0.00 0.00 2.83
223 224 8.622948 AGAAGTAGGAAAAAGGTAGATTTGTG 57.377 34.615 0.00 0.00 0.00 3.33
224 225 6.819397 AGTAGGAAAAAGGTAGATTTGTGC 57.181 37.500 0.00 0.00 0.00 4.57
225 226 6.543735 AGTAGGAAAAAGGTAGATTTGTGCT 58.456 36.000 0.00 0.00 33.24 4.40
226 227 7.686434 AGTAGGAAAAAGGTAGATTTGTGCTA 58.314 34.615 0.00 0.00 31.35 3.49
227 228 8.329502 AGTAGGAAAAAGGTAGATTTGTGCTAT 58.670 33.333 0.00 0.00 34.20 2.97
228 229 8.957466 GTAGGAAAAAGGTAGATTTGTGCTATT 58.043 33.333 0.00 0.00 34.20 1.73
229 230 8.422577 AGGAAAAAGGTAGATTTGTGCTATTT 57.577 30.769 0.00 0.00 27.35 1.40
230 231 8.870116 AGGAAAAAGGTAGATTTGTGCTATTTT 58.130 29.630 0.00 0.00 27.35 1.82
231 232 8.925700 GGAAAAAGGTAGATTTGTGCTATTTTG 58.074 33.333 0.00 0.00 0.00 2.44
232 233 9.476202 GAAAAAGGTAGATTTGTGCTATTTTGT 57.524 29.630 0.00 0.00 0.00 2.83
234 235 9.908152 AAAAGGTAGATTTGTGCTATTTTGTAC 57.092 29.630 0.00 0.00 0.00 2.90
235 236 8.630054 AAGGTAGATTTGTGCTATTTTGTACA 57.370 30.769 0.00 0.00 0.00 2.90
236 237 8.268850 AGGTAGATTTGTGCTATTTTGTACAG 57.731 34.615 0.00 0.00 34.34 2.74
237 238 6.967199 GGTAGATTTGTGCTATTTTGTACAGC 59.033 38.462 0.00 0.00 34.34 4.40
238 239 6.824305 AGATTTGTGCTATTTTGTACAGCT 57.176 33.333 5.73 0.00 36.26 4.24
239 240 7.921786 AGATTTGTGCTATTTTGTACAGCTA 57.078 32.000 5.73 0.00 36.26 3.32
240 241 7.752695 AGATTTGTGCTATTTTGTACAGCTAC 58.247 34.615 5.73 3.65 36.26 3.58
241 242 5.873179 TTGTGCTATTTTGTACAGCTACC 57.127 39.130 5.73 0.00 36.26 3.18
242 243 4.900684 TGTGCTATTTTGTACAGCTACCA 58.099 39.130 5.73 0.00 36.26 3.25
243 244 5.309638 TGTGCTATTTTGTACAGCTACCAA 58.690 37.500 5.73 0.00 36.26 3.67
244 245 5.943416 TGTGCTATTTTGTACAGCTACCAAT 59.057 36.000 5.73 0.00 36.26 3.16
245 246 6.093495 TGTGCTATTTTGTACAGCTACCAATC 59.907 38.462 5.73 0.00 36.26 2.67
246 247 6.093495 GTGCTATTTTGTACAGCTACCAATCA 59.907 38.462 5.73 0.00 36.26 2.57
247 248 6.657117 TGCTATTTTGTACAGCTACCAATCAA 59.343 34.615 5.73 0.00 36.26 2.57
248 249 7.175816 TGCTATTTTGTACAGCTACCAATCAAA 59.824 33.333 5.73 0.00 36.26 2.69
249 250 7.698130 GCTATTTTGTACAGCTACCAATCAAAG 59.302 37.037 0.00 0.00 32.46 2.77
250 251 5.957842 TTTGTACAGCTACCAATCAAAGG 57.042 39.130 0.00 0.00 0.00 3.11
251 252 4.634012 TGTACAGCTACCAATCAAAGGT 57.366 40.909 0.00 0.00 43.14 3.50
252 253 4.323417 TGTACAGCTACCAATCAAAGGTG 58.677 43.478 0.00 0.00 42.84 4.00
253 254 3.508845 ACAGCTACCAATCAAAGGTGT 57.491 42.857 0.87 0.87 44.66 4.16
254 255 3.149196 ACAGCTACCAATCAAAGGTGTG 58.851 45.455 5.68 0.00 46.85 3.82
255 256 2.095059 CAGCTACCAATCAAAGGTGTGC 60.095 50.000 0.00 0.00 40.26 4.57
256 257 2.162681 GCTACCAATCAAAGGTGTGCT 58.837 47.619 0.00 0.00 40.26 4.40
257 258 3.009033 AGCTACCAATCAAAGGTGTGCTA 59.991 43.478 11.13 0.00 43.40 3.49
258 259 3.947834 GCTACCAATCAAAGGTGTGCTAT 59.052 43.478 0.00 0.00 40.26 2.97
259 260 4.399303 GCTACCAATCAAAGGTGTGCTATT 59.601 41.667 0.00 0.00 40.26 1.73
260 261 5.105756 GCTACCAATCAAAGGTGTGCTATTT 60.106 40.000 0.00 0.00 40.26 1.40
261 262 5.806654 ACCAATCAAAGGTGTGCTATTTT 57.193 34.783 0.00 0.00 38.13 1.82
262 263 6.909550 ACCAATCAAAGGTGTGCTATTTTA 57.090 33.333 0.00 0.00 38.13 1.52
263 264 7.480760 ACCAATCAAAGGTGTGCTATTTTAT 57.519 32.000 0.00 0.00 38.13 1.40
264 265 7.547227 ACCAATCAAAGGTGTGCTATTTTATC 58.453 34.615 0.00 0.00 38.13 1.75
265 266 7.397192 ACCAATCAAAGGTGTGCTATTTTATCT 59.603 33.333 0.00 0.00 38.13 1.98
266 267 8.902806 CCAATCAAAGGTGTGCTATTTTATCTA 58.097 33.333 0.00 0.00 0.00 1.98
301 302 2.648059 CTATTGGAGCAAAGTCCCAGG 58.352 52.381 0.00 0.00 35.49 4.45
302 303 1.075601 ATTGGAGCAAAGTCCCAGGA 58.924 50.000 0.00 0.00 35.49 3.86
303 304 0.850100 TTGGAGCAAAGTCCCAGGAA 59.150 50.000 0.00 0.00 35.49 3.36
304 305 0.850100 TGGAGCAAAGTCCCAGGAAA 59.150 50.000 0.00 0.00 35.49 3.13
305 306 1.202927 TGGAGCAAAGTCCCAGGAAAG 60.203 52.381 0.00 0.00 35.49 2.62
306 307 1.539157 GAGCAAAGTCCCAGGAAAGG 58.461 55.000 0.00 0.00 0.00 3.11
307 308 0.853530 AGCAAAGTCCCAGGAAAGGT 59.146 50.000 0.00 0.00 0.00 3.50
308 309 0.961753 GCAAAGTCCCAGGAAAGGTG 59.038 55.000 0.00 0.00 0.00 4.00
309 310 1.754201 GCAAAGTCCCAGGAAAGGTGT 60.754 52.381 0.00 0.00 0.00 4.16
310 311 1.956477 CAAAGTCCCAGGAAAGGTGTG 59.044 52.381 0.00 0.00 0.00 3.82
311 312 0.178990 AAGTCCCAGGAAAGGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
312 313 1.062488 AGTCCCAGGAAAGGTGTGCT 61.062 55.000 0.00 0.00 0.00 4.40
313 314 0.690762 GTCCCAGGAAAGGTGTGCTA 59.309 55.000 0.00 0.00 0.00 3.49
314 315 1.282157 GTCCCAGGAAAGGTGTGCTAT 59.718 52.381 0.00 0.00 0.00 2.97
315 316 1.992557 TCCCAGGAAAGGTGTGCTATT 59.007 47.619 0.00 0.00 0.00 1.73
316 317 2.378547 TCCCAGGAAAGGTGTGCTATTT 59.621 45.455 0.00 0.00 0.00 1.40
317 318 3.165071 CCCAGGAAAGGTGTGCTATTTT 58.835 45.455 0.00 0.00 0.00 1.82
318 319 4.043561 TCCCAGGAAAGGTGTGCTATTTTA 59.956 41.667 0.00 0.00 0.00 1.52
319 320 4.956075 CCCAGGAAAGGTGTGCTATTTTAT 59.044 41.667 0.00 0.00 0.00 1.40
320 321 5.067805 CCCAGGAAAGGTGTGCTATTTTATC 59.932 44.000 0.00 0.00 0.00 1.75
321 322 5.652014 CCAGGAAAGGTGTGCTATTTTATCA 59.348 40.000 0.00 0.00 0.00 2.15
322 323 6.152661 CCAGGAAAGGTGTGCTATTTTATCAA 59.847 38.462 0.00 0.00 0.00 2.57
323 324 7.309744 CCAGGAAAGGTGTGCTATTTTATCAAA 60.310 37.037 0.00 0.00 0.00 2.69
324 325 8.253113 CAGGAAAGGTGTGCTATTTTATCAAAT 58.747 33.333 0.00 0.00 36.52 2.32
325 326 8.815912 AGGAAAGGTGTGCTATTTTATCAAATT 58.184 29.630 0.00 0.00 34.29 1.82
326 327 8.872845 GGAAAGGTGTGCTATTTTATCAAATTG 58.127 33.333 0.00 0.00 34.29 2.32
327 328 7.832503 AAGGTGTGCTATTTTATCAAATTGC 57.167 32.000 10.61 10.61 45.80 3.56
328 329 6.340522 AGGTGTGCTATTTTATCAAATTGCC 58.659 36.000 13.70 7.77 45.33 4.52
329 330 5.523552 GGTGTGCTATTTTATCAAATTGCCC 59.476 40.000 13.70 5.62 45.33 5.36
330 331 5.231991 GTGTGCTATTTTATCAAATTGCCCG 59.768 40.000 13.70 0.00 45.33 6.13
331 332 5.126222 TGTGCTATTTTATCAAATTGCCCGA 59.874 36.000 13.70 0.00 45.33 5.14
332 333 6.039616 GTGCTATTTTATCAAATTGCCCGAA 58.960 36.000 13.70 0.00 45.33 4.30
333 334 6.533367 GTGCTATTTTATCAAATTGCCCGAAA 59.467 34.615 13.70 0.00 45.33 3.46
334 335 7.064016 GTGCTATTTTATCAAATTGCCCGAAAA 59.936 33.333 13.70 0.00 45.33 2.29
335 336 7.604164 TGCTATTTTATCAAATTGCCCGAAAAA 59.396 29.630 13.70 0.00 45.33 1.94
351 352 4.437659 CCGAAAAAGAAAAGGTGTGTCGAA 60.438 41.667 0.00 0.00 0.00 3.71
407 408 1.318576 GTTCCCCACCACAGAAACAG 58.681 55.000 0.00 0.00 0.00 3.16
1309 1344 1.078143 AGCTCCGCTTGTTGGGATC 60.078 57.895 0.00 0.00 33.89 3.36
1428 1467 5.221130 GTCTCTCAACCAACTGTACTGTAC 58.779 45.833 10.98 10.98 0.00 2.90
1477 1516 8.288208 ACTCTCGTACTGTTTATATGATAACGG 58.712 37.037 0.00 0.00 36.83 4.44
1520 1559 2.230025 CCCAATAAACATGTGTGCGGAA 59.770 45.455 0.00 0.00 0.00 4.30
1551 1590 3.137913 CCTCCTGAATCATCTGATTGGGT 59.862 47.826 10.04 0.00 44.14 4.51
1563 1602 6.994496 TCATCTGATTGGGTGAATAGACATTC 59.006 38.462 0.00 0.00 40.92 2.67
1575 1616 6.684555 GTGAATAGACATTCTGCGACATTTTC 59.315 38.462 0.00 0.00 41.09 2.29
1576 1617 5.898606 GAATAGACATTCTGCGACATTTTCG 59.101 40.000 0.00 0.00 42.67 3.46
1628 1673 4.096732 ACGCTTCTTTGCACATAAATCC 57.903 40.909 0.00 0.00 0.00 3.01
2200 2246 1.557099 TGTCTACCGAACCTGCAGAT 58.443 50.000 17.39 2.96 0.00 2.90
2316 2362 8.798859 ATTATCTGTTTCTCTATTGTGTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
2317 2363 8.621532 TTATCTGTTTCTCTATTGTGTTGCTT 57.378 30.769 0.00 0.00 0.00 3.91
2540 2595 5.666718 TGGAAAATATGGAAATGGCAATCCT 59.333 36.000 19.60 10.41 36.64 3.24
2591 2646 4.437587 AGTGGCTGGCTCCCATGC 62.438 66.667 2.00 0.00 34.34 4.06
2621 2676 5.463499 TTGTGCTAGTATGTTTATGTGCG 57.537 39.130 0.00 0.00 0.00 5.34
2649 2704 0.179009 ACTGAAGCTGCTTCCTTGCA 60.179 50.000 32.70 17.66 39.51 4.08
2675 2730 1.674359 CCACTTTGTGCTGTGTGGTA 58.326 50.000 0.00 0.00 43.41 3.25
2791 2846 7.922278 GGTGCATATCTTTAGCATGATTTTCAA 59.078 33.333 0.00 0.00 40.78 2.69
2824 2879 8.557029 GCGTAATACTGAAATAAGCACCTTATT 58.443 33.333 4.78 4.78 45.15 1.40
2860 2915 1.812571 CAGCACACTGTATTTCCCCAC 59.187 52.381 0.00 0.00 39.22 4.61
2866 2921 1.280710 ACTGTATTTCCCCACGATGCA 59.719 47.619 0.00 0.00 0.00 3.96
2916 2971 1.668419 AGTGACCTGTGTGCTTCAAC 58.332 50.000 0.00 0.00 0.00 3.18
2991 3046 6.593268 TGTAGCTACACACTTGTATTACCA 57.407 37.500 22.67 0.00 37.58 3.25
3034 3089 6.980978 GCAGATATAACAGAACTGAGTTGCTA 59.019 38.462 0.90 0.00 0.00 3.49
3039 3094 9.890629 ATATAACAGAACTGAGTTGCTAATCAA 57.109 29.630 0.90 0.00 0.00 2.57
3040 3095 6.551385 AACAGAACTGAGTTGCTAATCAAG 57.449 37.500 0.90 0.00 34.91 3.02
3041 3096 5.615289 ACAGAACTGAGTTGCTAATCAAGT 58.385 37.500 0.90 0.00 40.87 3.16
3042 3097 6.759272 ACAGAACTGAGTTGCTAATCAAGTA 58.241 36.000 0.90 0.00 38.40 2.24
3043 3098 6.647067 ACAGAACTGAGTTGCTAATCAAGTAC 59.353 38.462 0.90 0.00 38.40 2.73
3044 3099 6.870965 CAGAACTGAGTTGCTAATCAAGTACT 59.129 38.462 0.90 0.00 38.40 2.73
3045 3100 7.062839 CAGAACTGAGTTGCTAATCAAGTACTC 59.937 40.741 0.90 0.00 38.40 2.59
3046 3101 5.725362 ACTGAGTTGCTAATCAAGTACTCC 58.275 41.667 0.00 0.00 38.40 3.85
3047 3102 5.086104 TGAGTTGCTAATCAAGTACTCCC 57.914 43.478 0.00 0.00 38.40 4.30
3048 3103 4.777896 TGAGTTGCTAATCAAGTACTCCCT 59.222 41.667 0.00 0.00 38.40 4.20
3049 3104 5.105310 TGAGTTGCTAATCAAGTACTCCCTC 60.105 44.000 0.00 0.00 38.40 4.30
3050 3105 4.162509 AGTTGCTAATCAAGTACTCCCTCC 59.837 45.833 0.00 0.00 36.61 4.30
3051 3106 2.693591 TGCTAATCAAGTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
3052 3107 2.694109 GCTAATCAAGTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
3053 3108 3.243468 GCTAATCAAGTACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
3054 3109 1.777941 ATCAAGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3055 3110 0.324091 TCAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
3056 3111 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3057 3112 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3058 3113 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3059 3114 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3060 3115 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3061 3116 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3062 3117 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3063 3118 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3064 3119 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3065 3120 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3066 3121 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3067 3122 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3068 3123 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3069 3124 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3070 3125 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3071 3126 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3072 3127 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3073 3128 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3074 3129 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3075 3130 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3076 3131 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3077 3132 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3078 3133 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3079 3134 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3101 3156 9.764363 TGTCTAAATATGGATGTATCAAGTCAC 57.236 33.333 0.00 0.00 0.00 3.67
3102 3157 9.764363 GTCTAAATATGGATGTATCAAGTCACA 57.236 33.333 0.00 0.00 0.00 3.58
3143 3198 9.439500 ACATCCGTATCTAGACTAATCTAAGAC 57.561 37.037 0.00 0.00 36.98 3.01
3144 3199 9.438228 CATCCGTATCTAGACTAATCTAAGACA 57.562 37.037 0.00 0.00 36.98 3.41
3146 3201 9.491675 TCCGTATCTAGACTAATCTAAGACAAG 57.508 37.037 0.00 0.00 36.98 3.16
3147 3202 9.491675 CCGTATCTAGACTAATCTAAGACAAGA 57.508 37.037 0.00 0.00 36.98 3.02
3155 3210 9.454859 AGACTAATCTAAGACAAGAATTTTGGG 57.545 33.333 5.68 0.00 31.46 4.12
3156 3211 9.449719 GACTAATCTAAGACAAGAATTTTGGGA 57.550 33.333 5.68 0.00 0.00 4.37
3157 3212 9.232473 ACTAATCTAAGACAAGAATTTTGGGAC 57.768 33.333 5.68 0.00 0.00 4.46
3158 3213 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3159 3214 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3160 3215 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3161 3216 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3162 3217 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3274 3330 3.801594 GCAGCTAAGCTTGATAGTGTCTC 59.198 47.826 9.86 0.00 36.40 3.36
3286 3342 7.569639 TTGATAGTGTCTCGCTCTTAGTAAT 57.430 36.000 0.00 0.00 0.00 1.89
3377 3461 8.608844 AGCAATTTTCTTATATACTCCCTTCG 57.391 34.615 0.00 0.00 0.00 3.79
3378 3462 8.211629 AGCAATTTTCTTATATACTCCCTTCGT 58.788 33.333 0.00 0.00 0.00 3.85
3379 3463 8.837389 GCAATTTTCTTATATACTCCCTTCGTT 58.163 33.333 0.00 0.00 0.00 3.85
3381 3465 9.557061 AATTTTCTTATATACTCCCTTCGTTCC 57.443 33.333 0.00 0.00 0.00 3.62
3382 3466 7.909485 TTTCTTATATACTCCCTTCGTTCCT 57.091 36.000 0.00 0.00 0.00 3.36
3383 3467 9.425248 TTTTCTTATATACTCCCTTCGTTCCTA 57.575 33.333 0.00 0.00 0.00 2.94
3384 3468 9.425248 TTTCTTATATACTCCCTTCGTTCCTAA 57.575 33.333 0.00 0.00 0.00 2.69
3385 3469 9.425248 TTCTTATATACTCCCTTCGTTCCTAAA 57.575 33.333 0.00 0.00 0.00 1.85
3386 3470 9.597681 TCTTATATACTCCCTTCGTTCCTAAAT 57.402 33.333 0.00 0.00 0.00 1.40
3392 3476 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3393 3477 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3394 3478 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3395 3479 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
3396 3480 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
3397 3481 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
3425 3509 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
3426 3510 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
3427 3511 8.307483 AGATTTCAATATGGACTACATACGGAG 58.693 37.037 0.00 0.00 44.41 4.63
3428 3512 5.386958 TCAATATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 44.41 4.70
3429 3513 4.830600 TCAATATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 44.41 4.26
3430 3514 5.303333 TCAATATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 44.41 3.91
3431 3515 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
3432 3516 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3433 3517 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3434 3518 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3435 3519 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3436 3520 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3437 3521 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3438 3522 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3439 3523 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3440 3524 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3441 3525 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3442 3526 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3443 3527 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3444 3528 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3445 3529 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3446 3530 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3447 3531 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3492 3576 9.778741 ACATCCGTATGTAGTTCATATTGAAAT 57.221 29.630 0.00 0.00 44.66 2.17
3495 3579 9.692749 TCCGTATGTAGTTCATATTGAAATCTC 57.307 33.333 0.00 0.00 38.22 2.75
3496 3580 9.698309 CCGTATGTAGTTCATATTGAAATCTCT 57.302 33.333 0.00 0.00 38.22 3.10
3523 3607 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3524 3608 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3525 3609 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3526 3610 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3542 3626 5.049405 CGGAGGGAGTAATAAATTGATGCAC 60.049 44.000 0.00 0.00 0.00 4.57
3554 3638 0.874390 TGATGCACGCCTCAAGTTTC 59.126 50.000 0.00 0.00 0.00 2.78
3602 3689 4.455606 AGCAGAACATATAGGTCTTTGGC 58.544 43.478 0.00 0.00 43.38 4.52
3604 3691 4.780815 CAGAACATATAGGTCTTTGGCCA 58.219 43.478 0.00 0.00 43.38 5.36
3633 3721 3.186909 TGATAACGGTCATCTGCTTTCG 58.813 45.455 0.00 0.00 0.00 3.46
3638 3726 2.002586 CGGTCATCTGCTTTCGTGATT 58.997 47.619 0.00 0.00 0.00 2.57
3645 3733 3.930336 TCTGCTTTCGTGATTCATCAGT 58.070 40.909 0.00 0.00 37.51 3.41
3658 3746 7.435192 CGTGATTCATCAGTACTGCATTACTTA 59.565 37.037 18.45 7.23 37.51 2.24
3766 3854 4.399004 CCTCTACAAACATGGAGAGAGG 57.601 50.000 17.62 12.47 42.98 3.69
3866 3954 4.739793 TCCCCTTGAATGTTGTGATTTCT 58.260 39.130 0.00 0.00 0.00 2.52
4126 4214 1.623811 ACGGTCATGTCTTAGCTTGGT 59.376 47.619 0.00 0.00 0.00 3.67
4277 4377 6.486993 GTGTTCTGTCCTTTTTCCTACTGAAT 59.513 38.462 0.00 0.00 34.01 2.57
4316 4416 0.591170 CGAACCAAAACAGCACCGAT 59.409 50.000 0.00 0.00 0.00 4.18
4325 4425 3.827008 AACAGCACCGATATCTCACAT 57.173 42.857 0.34 0.00 0.00 3.21
4387 4487 7.093322 AGGCAAGTTTCATTCACAAGATATC 57.907 36.000 0.00 0.00 0.00 1.63
4493 4664 4.103365 ACATAGCAGAGAGTCGAAGTTG 57.897 45.455 0.00 0.00 0.00 3.16
4497 4668 1.066914 CAGAGAGTCGAAGTTGCAGC 58.933 55.000 0.00 0.00 0.00 5.25
4498 4669 0.676184 AGAGAGTCGAAGTTGCAGCA 59.324 50.000 2.55 0.00 0.00 4.41
4517 4688 5.559035 GCAGCACAACAAGAAACACTACTAG 60.559 44.000 0.00 0.00 0.00 2.57
4518 4689 5.523916 CAGCACAACAAGAAACACTACTAGT 59.476 40.000 0.00 0.00 0.00 2.57
4519 4690 6.700081 CAGCACAACAAGAAACACTACTAGTA 59.300 38.462 1.89 1.89 0.00 1.82
4547 4718 1.375098 GAGCTTCAGCATCAGCCACC 61.375 60.000 0.75 0.00 45.16 4.61
4588 4765 5.136828 TGTTTGTGCCATAGAAAAAGGAGA 58.863 37.500 0.00 0.00 0.00 3.71
4625 4802 8.925700 AGTTTTCACATTTCAAGTTTCAACTTC 58.074 29.630 1.76 0.00 45.65 3.01
4709 4888 6.560253 TTGGTTATCTTTTTGAGACTCAGC 57.440 37.500 5.10 0.00 37.17 4.26
4714 4893 7.255277 GGTTATCTTTTTGAGACTCAGCTGTTT 60.255 37.037 14.67 0.97 37.17 2.83
4739 4918 7.071014 GAGATGCTTCTCTTTTTCTTACAGG 57.929 40.000 19.60 0.00 44.29 4.00
4803 4982 4.829064 TGGCACAGATTTTGAGTGTTAC 57.171 40.909 0.00 0.00 35.75 2.50
4870 5065 2.638556 TCTTCTCTCGCGAAAAGAGG 57.361 50.000 19.90 19.23 40.58 3.69
4873 5068 0.898789 TCTCTCGCGAAAAGAGGGGT 60.899 55.000 19.90 0.00 40.58 4.95
4875 5070 1.183030 TCTCGCGAAAAGAGGGGTGA 61.183 55.000 11.33 0.00 36.45 4.02
4881 5076 0.609406 GAAAAGAGGGGTGACAGGGC 60.609 60.000 0.00 0.00 0.00 5.19
4932 5128 0.185175 GGTTTGTGTGTCCCCTCCTT 59.815 55.000 0.00 0.00 0.00 3.36
4936 5134 1.292541 GTGTGTCCCCTCCTTCGTC 59.707 63.158 0.00 0.00 0.00 4.20
4956 5154 4.742201 CCGTGCCGGTGACTGGAG 62.742 72.222 16.12 4.32 42.73 3.86
4957 5155 4.742201 CGTGCCGGTGACTGGAGG 62.742 72.222 16.12 1.55 0.00 4.30
4958 5156 3.311110 GTGCCGGTGACTGGAGGA 61.311 66.667 16.12 0.00 0.00 3.71
4959 5157 2.997315 TGCCGGTGACTGGAGGAG 60.997 66.667 16.12 0.00 0.00 3.69
4960 5158 3.775654 GCCGGTGACTGGAGGAGG 61.776 72.222 16.12 0.00 0.00 4.30
4961 5159 2.037367 CCGGTGACTGGAGGAGGA 59.963 66.667 3.85 0.00 0.00 3.71
4962 5160 2.055042 CCGGTGACTGGAGGAGGAG 61.055 68.421 3.85 0.00 0.00 3.69
4963 5161 2.055042 CGGTGACTGGAGGAGGAGG 61.055 68.421 0.00 0.00 0.00 4.30
4964 5162 1.687493 GGTGACTGGAGGAGGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
4965 5163 1.687493 GTGACTGGAGGAGGAGGGG 60.687 68.421 0.00 0.00 0.00 4.79
4966 5164 1.862138 TGACTGGAGGAGGAGGGGA 60.862 63.158 0.00 0.00 0.00 4.81
4967 5165 1.382009 GACTGGAGGAGGAGGGGAC 60.382 68.421 0.00 0.00 0.00 4.46
4980 5178 3.171388 GGGACCCCGGATCTGCAT 61.171 66.667 0.73 0.00 0.00 3.96
4981 5179 2.427753 GGACCCCGGATCTGCATC 59.572 66.667 0.73 0.00 0.00 3.91
4982 5180 2.029666 GACCCCGGATCTGCATCG 59.970 66.667 0.73 0.00 0.00 3.84
4983 5181 3.521529 GACCCCGGATCTGCATCGG 62.522 68.421 0.73 9.88 43.05 4.18
4984 5182 3.550431 CCCCGGATCTGCATCGGT 61.550 66.667 0.73 0.00 41.98 4.69
4985 5183 2.280389 CCCGGATCTGCATCGGTG 60.280 66.667 0.73 0.00 41.98 4.94
4986 5184 2.796193 CCCGGATCTGCATCGGTGA 61.796 63.158 0.73 0.00 41.98 4.02
4987 5185 1.368950 CCGGATCTGCATCGGTGAT 59.631 57.895 0.00 0.00 39.04 3.06
4988 5186 0.947660 CCGGATCTGCATCGGTGATG 60.948 60.000 0.00 2.45 42.37 3.07
4989 5187 0.249615 CGGATCTGCATCGGTGATGT 60.250 55.000 0.00 0.00 41.60 3.06
4990 5188 1.224075 GGATCTGCATCGGTGATGTG 58.776 55.000 0.00 2.99 41.60 3.21
4991 5189 1.224075 GATCTGCATCGGTGATGTGG 58.776 55.000 0.00 2.70 41.60 4.17
4992 5190 0.832626 ATCTGCATCGGTGATGTGGA 59.167 50.000 0.00 7.28 41.60 4.02
4993 5191 0.832626 TCTGCATCGGTGATGTGGAT 59.167 50.000 0.00 0.00 41.60 3.41
4994 5192 2.038659 TCTGCATCGGTGATGTGGATA 58.961 47.619 0.00 0.00 41.60 2.59
4995 5193 2.036346 TCTGCATCGGTGATGTGGATAG 59.964 50.000 0.00 1.44 41.60 2.08
4996 5194 1.070601 TGCATCGGTGATGTGGATAGG 59.929 52.381 0.00 0.00 41.60 2.57
4997 5195 1.609061 GCATCGGTGATGTGGATAGGG 60.609 57.143 0.00 0.00 41.60 3.53
4998 5196 0.687354 ATCGGTGATGTGGATAGGGC 59.313 55.000 0.00 0.00 0.00 5.19
4999 5197 1.071471 CGGTGATGTGGATAGGGCC 59.929 63.158 0.00 0.00 0.00 5.80
5000 5198 1.071471 GGTGATGTGGATAGGGCCG 59.929 63.158 0.00 0.00 0.00 6.13
5001 5199 1.696097 GGTGATGTGGATAGGGCCGT 61.696 60.000 2.24 2.24 0.00 5.68
5002 5200 1.045407 GTGATGTGGATAGGGCCGTA 58.955 55.000 7.78 7.78 0.00 4.02
5003 5201 1.045407 TGATGTGGATAGGGCCGTAC 58.955 55.000 7.45 0.00 0.00 3.67
5004 5202 0.038526 GATGTGGATAGGGCCGTACG 60.039 60.000 7.45 8.69 0.00 3.67
5005 5203 1.469335 ATGTGGATAGGGCCGTACGG 61.469 60.000 30.06 30.06 38.57 4.02
5006 5204 2.129785 GTGGATAGGGCCGTACGGT 61.130 63.158 33.34 17.94 37.65 4.83
5007 5205 1.381599 TGGATAGGGCCGTACGGTT 60.382 57.895 33.34 21.58 37.65 4.44
5008 5206 0.106268 TGGATAGGGCCGTACGGTTA 60.106 55.000 33.34 22.87 37.65 2.85
5009 5207 0.600057 GGATAGGGCCGTACGGTTAG 59.400 60.000 33.34 10.49 37.65 2.34
5010 5208 0.600057 GATAGGGCCGTACGGTTAGG 59.400 60.000 33.34 10.10 37.65 2.69
5011 5209 0.106015 ATAGGGCCGTACGGTTAGGT 60.106 55.000 33.34 17.01 37.65 3.08
5012 5210 0.324275 TAGGGCCGTACGGTTAGGTT 60.324 55.000 33.34 16.36 37.65 3.50
5013 5211 1.194121 AGGGCCGTACGGTTAGGTTT 61.194 55.000 33.34 11.26 37.65 3.27
5014 5212 0.534873 GGGCCGTACGGTTAGGTTTA 59.465 55.000 33.34 0.00 37.65 2.01
5015 5213 1.471501 GGGCCGTACGGTTAGGTTTAG 60.472 57.143 33.34 6.33 37.65 1.85
5016 5214 1.471501 GGCCGTACGGTTAGGTTTAGG 60.472 57.143 33.34 5.79 37.65 2.69
5017 5215 1.204704 GCCGTACGGTTAGGTTTAGGT 59.795 52.381 33.34 0.00 37.65 3.08
5018 5216 2.353704 GCCGTACGGTTAGGTTTAGGTT 60.354 50.000 33.34 0.00 37.65 3.50
5019 5217 3.864540 GCCGTACGGTTAGGTTTAGGTTT 60.865 47.826 33.34 0.00 37.65 3.27
5020 5218 3.926527 CCGTACGGTTAGGTTTAGGTTTC 59.073 47.826 26.39 0.00 0.00 2.78
5021 5219 4.321974 CCGTACGGTTAGGTTTAGGTTTCT 60.322 45.833 26.39 0.00 0.00 2.52
5022 5220 5.230182 CGTACGGTTAGGTTTAGGTTTCTT 58.770 41.667 7.57 0.00 0.00 2.52
5023 5221 5.119125 CGTACGGTTAGGTTTAGGTTTCTTG 59.881 44.000 7.57 0.00 0.00 3.02
5024 5222 3.817084 ACGGTTAGGTTTAGGTTTCTTGC 59.183 43.478 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.841988 ATCTCGCCCTGCCTCCTC 60.842 66.667 0.00 0.00 0.00 3.71
2 3 3.160047 CATCTCGCCCTGCCTCCT 61.160 66.667 0.00 0.00 0.00 3.69
3 4 4.247380 CCATCTCGCCCTGCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
4 5 4.925861 GCCATCTCGCCCTGCCTC 62.926 72.222 0.00 0.00 0.00 4.70
64 65 4.767255 CTCACCGTGCCTCCTGCC 62.767 72.222 0.00 0.00 40.16 4.85
65 66 4.767255 CCTCACCGTGCCTCCTGC 62.767 72.222 0.00 0.00 41.77 4.85
66 67 4.767255 GCCTCACCGTGCCTCCTG 62.767 72.222 0.00 0.00 0.00 3.86
85 86 3.023591 GAACTAACCAGTGCGCCGC 62.024 63.158 4.18 0.00 34.36 6.53
86 87 2.726691 CGAACTAACCAGTGCGCCG 61.727 63.158 4.18 0.00 46.55 6.46
87 88 3.165498 CGAACTAACCAGTGCGCC 58.835 61.111 4.18 0.00 46.55 6.53
90 91 2.597520 GAGAGACGAACTAACCAGTGC 58.402 52.381 0.00 0.00 34.36 4.40
91 92 2.414293 CGGAGAGACGAACTAACCAGTG 60.414 54.545 0.00 0.00 34.36 3.66
92 93 1.811359 CGGAGAGACGAACTAACCAGT 59.189 52.381 0.00 0.00 36.19 4.00
93 94 1.467713 GCGGAGAGACGAACTAACCAG 60.468 57.143 0.00 0.00 35.47 4.00
94 95 0.524862 GCGGAGAGACGAACTAACCA 59.475 55.000 0.00 0.00 35.47 3.67
95 96 0.179142 GGCGGAGAGACGAACTAACC 60.179 60.000 0.00 0.00 35.47 2.85
96 97 0.810016 AGGCGGAGAGACGAACTAAC 59.190 55.000 0.00 0.00 35.47 2.34
97 98 1.093159 GAGGCGGAGAGACGAACTAA 58.907 55.000 0.00 0.00 35.47 2.24
98 99 0.747283 GGAGGCGGAGAGACGAACTA 60.747 60.000 0.00 0.00 35.47 2.24
99 100 2.047443 GGAGGCGGAGAGACGAACT 61.047 63.158 0.00 0.00 35.47 3.01
100 101 2.047443 AGGAGGCGGAGAGACGAAC 61.047 63.158 0.00 0.00 35.47 3.95
101 102 2.046864 CAGGAGGCGGAGAGACGAA 61.047 63.158 0.00 0.00 35.47 3.85
102 103 2.438614 CAGGAGGCGGAGAGACGA 60.439 66.667 0.00 0.00 35.47 4.20
103 104 2.752238 ACAGGAGGCGGAGAGACG 60.752 66.667 0.00 0.00 0.00 4.18
104 105 2.888863 CACAGGAGGCGGAGAGAC 59.111 66.667 0.00 0.00 0.00 3.36
105 106 3.071206 GCACAGGAGGCGGAGAGA 61.071 66.667 0.00 0.00 0.00 3.10
106 107 3.073735 AGCACAGGAGGCGGAGAG 61.074 66.667 0.00 0.00 36.08 3.20
107 108 3.071206 GAGCACAGGAGGCGGAGA 61.071 66.667 0.00 0.00 36.08 3.71
108 109 2.177594 AAAGAGCACAGGAGGCGGAG 62.178 60.000 0.00 0.00 36.08 4.63
109 110 2.217038 AAAGAGCACAGGAGGCGGA 61.217 57.895 0.00 0.00 36.08 5.54
110 111 2.037136 CAAAGAGCACAGGAGGCGG 61.037 63.158 0.00 0.00 36.08 6.13
111 112 0.392193 ATCAAAGAGCACAGGAGGCG 60.392 55.000 0.00 0.00 36.08 5.52
112 113 1.377536 GATCAAAGAGCACAGGAGGC 58.622 55.000 0.00 0.00 0.00 4.70
113 114 1.066573 ACGATCAAAGAGCACAGGAGG 60.067 52.381 0.00 0.00 0.00 4.30
114 115 2.376808 ACGATCAAAGAGCACAGGAG 57.623 50.000 0.00 0.00 0.00 3.69
115 116 2.839486 AACGATCAAAGAGCACAGGA 57.161 45.000 0.00 0.00 0.00 3.86
116 117 2.159787 CGAAACGATCAAAGAGCACAGG 60.160 50.000 0.00 0.00 0.00 4.00
117 118 2.731451 TCGAAACGATCAAAGAGCACAG 59.269 45.455 0.00 0.00 0.00 3.66
118 119 2.749776 TCGAAACGATCAAAGAGCACA 58.250 42.857 0.00 0.00 0.00 4.57
119 120 3.999229 ATCGAAACGATCAAAGAGCAC 57.001 42.857 0.71 0.00 43.45 4.40
130 131 1.401931 GGTTCTGGTCGATCGAAACGA 60.402 52.381 21.31 12.92 41.13 3.85
131 132 0.989890 GGTTCTGGTCGATCGAAACG 59.010 55.000 21.31 10.70 0.00 3.60
132 133 1.993370 CTGGTTCTGGTCGATCGAAAC 59.007 52.381 21.31 19.25 0.00 2.78
133 134 1.067142 CCTGGTTCTGGTCGATCGAAA 60.067 52.381 21.31 10.49 0.00 3.46
134 135 0.530744 CCTGGTTCTGGTCGATCGAA 59.469 55.000 21.31 4.08 0.00 3.71
135 136 1.320344 CCCTGGTTCTGGTCGATCGA 61.320 60.000 15.15 15.15 0.00 3.59
136 137 1.141881 CCCTGGTTCTGGTCGATCG 59.858 63.158 9.36 9.36 0.00 3.69
137 138 1.522569 CCCCTGGTTCTGGTCGATC 59.477 63.158 0.00 0.00 0.00 3.69
138 139 2.670148 GCCCCTGGTTCTGGTCGAT 61.670 63.158 0.00 0.00 0.00 3.59
139 140 3.319198 GCCCCTGGTTCTGGTCGA 61.319 66.667 0.00 0.00 0.00 4.20
140 141 2.484287 ATTGCCCCTGGTTCTGGTCG 62.484 60.000 0.00 0.00 0.00 4.79
141 142 0.251787 AATTGCCCCTGGTTCTGGTC 60.252 55.000 0.00 0.00 0.00 4.02
142 143 0.190815 AAATTGCCCCTGGTTCTGGT 59.809 50.000 0.00 0.00 0.00 4.00
143 144 0.897621 GAAATTGCCCCTGGTTCTGG 59.102 55.000 0.00 0.00 0.00 3.86
144 145 0.527565 CGAAATTGCCCCTGGTTCTG 59.472 55.000 0.00 0.00 0.00 3.02
145 146 0.112412 ACGAAATTGCCCCTGGTTCT 59.888 50.000 0.00 0.00 0.00 3.01
146 147 0.526211 GACGAAATTGCCCCTGGTTC 59.474 55.000 0.00 0.00 0.00 3.62
147 148 0.898326 GGACGAAATTGCCCCTGGTT 60.898 55.000 0.00 0.00 0.00 3.67
148 149 1.304134 GGACGAAATTGCCCCTGGT 60.304 57.895 0.00 0.00 0.00 4.00
149 150 0.254747 TAGGACGAAATTGCCCCTGG 59.745 55.000 2.92 0.00 0.00 4.45
150 151 2.348411 ATAGGACGAAATTGCCCCTG 57.652 50.000 2.92 0.00 0.00 4.45
151 152 4.513406 TTTATAGGACGAAATTGCCCCT 57.487 40.909 0.00 0.00 0.00 4.79
152 153 5.784578 ATTTTATAGGACGAAATTGCCCC 57.215 39.130 0.00 0.00 0.00 5.80
153 154 7.882179 ACATATTTTATAGGACGAAATTGCCC 58.118 34.615 0.00 0.00 0.00 5.36
154 155 8.564574 TGACATATTTTATAGGACGAAATTGCC 58.435 33.333 0.00 0.00 0.00 4.52
160 161 9.884636 CCCATATGACATATTTTATAGGACGAA 57.115 33.333 3.65 0.00 0.00 3.85
161 162 7.985184 GCCCATATGACATATTTTATAGGACGA 59.015 37.037 3.65 0.00 0.00 4.20
162 163 7.226720 GGCCCATATGACATATTTTATAGGACG 59.773 40.741 3.65 0.00 0.00 4.79
163 164 7.502561 GGGCCCATATGACATATTTTATAGGAC 59.497 40.741 19.95 2.80 0.00 3.85
164 165 7.582719 GGGCCCATATGACATATTTTATAGGA 58.417 38.462 19.95 0.00 0.00 2.94
165 166 6.486657 CGGGCCCATATGACATATTTTATAGG 59.513 42.308 24.92 3.22 0.00 2.57
166 167 7.054124 ACGGGCCCATATGACATATTTTATAG 58.946 38.462 24.92 0.00 0.00 1.31
167 168 6.964464 ACGGGCCCATATGACATATTTTATA 58.036 36.000 24.92 0.00 0.00 0.98
168 169 5.826643 ACGGGCCCATATGACATATTTTAT 58.173 37.500 24.92 0.00 0.00 1.40
169 170 5.249780 ACGGGCCCATATGACATATTTTA 57.750 39.130 24.92 0.00 0.00 1.52
170 171 4.112634 ACGGGCCCATATGACATATTTT 57.887 40.909 24.92 0.00 0.00 1.82
171 172 3.806949 ACGGGCCCATATGACATATTT 57.193 42.857 24.92 0.00 0.00 1.40
172 173 3.369052 CGTACGGGCCCATATGACATATT 60.369 47.826 24.92 0.00 0.00 1.28
173 174 2.167693 CGTACGGGCCCATATGACATAT 59.832 50.000 24.92 1.87 0.00 1.78
174 175 1.546923 CGTACGGGCCCATATGACATA 59.453 52.381 24.92 0.00 0.00 2.29
175 176 0.320374 CGTACGGGCCCATATGACAT 59.680 55.000 24.92 0.00 0.00 3.06
176 177 1.044231 ACGTACGGGCCCATATGACA 61.044 55.000 23.72 0.00 0.00 3.58
177 178 0.599204 CACGTACGGGCCCATATGAC 60.599 60.000 23.72 10.85 0.00 3.06
178 179 1.044231 ACACGTACGGGCCCATATGA 61.044 55.000 23.72 0.00 0.00 2.15
179 180 0.675083 TACACGTACGGGCCCATATG 59.325 55.000 24.92 19.99 0.00 1.78
180 181 0.963962 CTACACGTACGGGCCCATAT 59.036 55.000 24.92 9.25 0.00 1.78
181 182 0.106769 TCTACACGTACGGGCCCATA 60.107 55.000 24.92 8.53 0.00 2.74
182 183 0.971959 TTCTACACGTACGGGCCCAT 60.972 55.000 24.92 10.00 0.00 4.00
183 184 1.597797 CTTCTACACGTACGGGCCCA 61.598 60.000 24.92 0.00 0.00 5.36
184 185 1.140375 CTTCTACACGTACGGGCCC 59.860 63.158 19.40 13.57 0.00 5.80
185 186 1.064654 CTACTTCTACACGTACGGGCC 59.935 57.143 19.40 0.00 0.00 5.80
186 187 1.064654 CCTACTTCTACACGTACGGGC 59.935 57.143 19.40 0.00 0.00 6.13
187 188 2.632377 TCCTACTTCTACACGTACGGG 58.368 52.381 17.69 17.69 0.00 5.28
188 189 4.685169 TTTCCTACTTCTACACGTACGG 57.315 45.455 21.06 11.05 0.00 4.02
189 190 5.570589 CCTTTTTCCTACTTCTACACGTACG 59.429 44.000 15.01 15.01 0.00 3.67
190 191 6.450545 ACCTTTTTCCTACTTCTACACGTAC 58.549 40.000 0.00 0.00 0.00 3.67
191 192 6.655078 ACCTTTTTCCTACTTCTACACGTA 57.345 37.500 0.00 0.00 0.00 3.57
192 193 5.541953 ACCTTTTTCCTACTTCTACACGT 57.458 39.130 0.00 0.00 0.00 4.49
193 194 6.917533 TCTACCTTTTTCCTACTTCTACACG 58.082 40.000 0.00 0.00 0.00 4.49
194 195 9.722184 AAATCTACCTTTTTCCTACTTCTACAC 57.278 33.333 0.00 0.00 0.00 2.90
195 196 9.720769 CAAATCTACCTTTTTCCTACTTCTACA 57.279 33.333 0.00 0.00 0.00 2.74
196 197 9.722184 ACAAATCTACCTTTTTCCTACTTCTAC 57.278 33.333 0.00 0.00 0.00 2.59
197 198 9.720769 CACAAATCTACCTTTTTCCTACTTCTA 57.279 33.333 0.00 0.00 0.00 2.10
198 199 7.175119 GCACAAATCTACCTTTTTCCTACTTCT 59.825 37.037 0.00 0.00 0.00 2.85
199 200 7.175119 AGCACAAATCTACCTTTTTCCTACTTC 59.825 37.037 0.00 0.00 0.00 3.01
200 201 7.004691 AGCACAAATCTACCTTTTTCCTACTT 58.995 34.615 0.00 0.00 0.00 2.24
201 202 6.543735 AGCACAAATCTACCTTTTTCCTACT 58.456 36.000 0.00 0.00 0.00 2.57
202 203 6.819397 AGCACAAATCTACCTTTTTCCTAC 57.181 37.500 0.00 0.00 0.00 3.18
203 204 9.528489 AAATAGCACAAATCTACCTTTTTCCTA 57.472 29.630 0.00 0.00 0.00 2.94
204 205 8.422577 AAATAGCACAAATCTACCTTTTTCCT 57.577 30.769 0.00 0.00 0.00 3.36
205 206 8.925700 CAAAATAGCACAAATCTACCTTTTTCC 58.074 33.333 0.00 0.00 0.00 3.13
206 207 9.476202 ACAAAATAGCACAAATCTACCTTTTTC 57.524 29.630 0.00 0.00 0.00 2.29
208 209 9.908152 GTACAAAATAGCACAAATCTACCTTTT 57.092 29.630 0.00 0.00 0.00 2.27
209 210 9.073475 TGTACAAAATAGCACAAATCTACCTTT 57.927 29.630 0.00 0.00 0.00 3.11
210 211 8.630054 TGTACAAAATAGCACAAATCTACCTT 57.370 30.769 0.00 0.00 0.00 3.50
211 212 7.148239 GCTGTACAAAATAGCACAAATCTACCT 60.148 37.037 0.00 0.00 37.40 3.08
212 213 6.967199 GCTGTACAAAATAGCACAAATCTACC 59.033 38.462 0.00 0.00 37.40 3.18
213 214 7.752695 AGCTGTACAAAATAGCACAAATCTAC 58.247 34.615 6.79 0.00 39.84 2.59
214 215 7.921786 AGCTGTACAAAATAGCACAAATCTA 57.078 32.000 6.79 0.00 39.84 1.98
215 216 6.824305 AGCTGTACAAAATAGCACAAATCT 57.176 33.333 6.79 0.00 39.84 2.40
216 217 6.967199 GGTAGCTGTACAAAATAGCACAAATC 59.033 38.462 0.00 0.00 39.84 2.17
217 218 6.432783 TGGTAGCTGTACAAAATAGCACAAAT 59.567 34.615 0.00 0.00 39.84 2.32
218 219 5.765677 TGGTAGCTGTACAAAATAGCACAAA 59.234 36.000 0.00 0.00 39.84 2.83
219 220 5.309638 TGGTAGCTGTACAAAATAGCACAA 58.690 37.500 0.00 0.00 39.84 3.33
220 221 4.900684 TGGTAGCTGTACAAAATAGCACA 58.099 39.130 0.00 0.84 39.84 4.57
221 222 5.873179 TTGGTAGCTGTACAAAATAGCAC 57.127 39.130 11.10 5.89 39.84 4.40
222 223 6.176896 TGATTGGTAGCTGTACAAAATAGCA 58.823 36.000 0.00 7.80 39.84 3.49
223 224 6.677781 TGATTGGTAGCTGTACAAAATAGC 57.322 37.500 0.00 0.00 37.71 2.97
224 225 8.184192 CCTTTGATTGGTAGCTGTACAAAATAG 58.816 37.037 0.00 0.00 0.00 1.73
225 226 7.668052 ACCTTTGATTGGTAGCTGTACAAAATA 59.332 33.333 0.00 0.00 35.80 1.40
226 227 6.493458 ACCTTTGATTGGTAGCTGTACAAAAT 59.507 34.615 0.00 0.00 35.80 1.82
227 228 5.830991 ACCTTTGATTGGTAGCTGTACAAAA 59.169 36.000 0.00 0.00 35.80 2.44
228 229 5.240623 CACCTTTGATTGGTAGCTGTACAAA 59.759 40.000 0.00 0.00 35.80 2.83
229 230 4.759693 CACCTTTGATTGGTAGCTGTACAA 59.240 41.667 0.00 0.00 35.80 2.41
230 231 4.202419 ACACCTTTGATTGGTAGCTGTACA 60.202 41.667 0.00 0.00 35.80 2.90
231 232 4.154195 CACACCTTTGATTGGTAGCTGTAC 59.846 45.833 0.00 0.00 35.80 2.90
232 233 4.323417 CACACCTTTGATTGGTAGCTGTA 58.677 43.478 0.00 0.00 35.80 2.74
233 234 3.149196 CACACCTTTGATTGGTAGCTGT 58.851 45.455 0.00 0.00 35.80 4.40
234 235 2.095059 GCACACCTTTGATTGGTAGCTG 60.095 50.000 0.00 0.00 35.80 4.24
235 236 2.162681 GCACACCTTTGATTGGTAGCT 58.837 47.619 0.00 0.00 35.80 3.32
236 237 2.162681 AGCACACCTTTGATTGGTAGC 58.837 47.619 0.00 0.00 37.77 3.58
237 238 6.515272 AAATAGCACACCTTTGATTGGTAG 57.485 37.500 0.00 0.00 35.80 3.18
238 239 6.909550 AAAATAGCACACCTTTGATTGGTA 57.090 33.333 0.00 0.00 35.80 3.25
239 240 5.806654 AAAATAGCACACCTTTGATTGGT 57.193 34.783 0.00 0.00 38.53 3.67
240 241 7.775120 AGATAAAATAGCACACCTTTGATTGG 58.225 34.615 0.00 0.00 0.00 3.16
281 282 2.239654 TCCTGGGACTTTGCTCCAATAG 59.760 50.000 0.00 0.00 30.97 1.73
282 283 2.274542 TCCTGGGACTTTGCTCCAATA 58.725 47.619 0.00 0.00 30.97 1.90
283 284 1.075601 TCCTGGGACTTTGCTCCAAT 58.924 50.000 0.00 0.00 30.97 3.16
284 285 0.850100 TTCCTGGGACTTTGCTCCAA 59.150 50.000 0.00 0.00 30.97 3.53
285 286 0.850100 TTTCCTGGGACTTTGCTCCA 59.150 50.000 0.00 0.00 30.97 3.86
286 287 1.539157 CTTTCCTGGGACTTTGCTCC 58.461 55.000 0.00 0.00 0.00 4.70
287 288 1.202940 ACCTTTCCTGGGACTTTGCTC 60.203 52.381 0.00 0.00 0.00 4.26
288 289 0.853530 ACCTTTCCTGGGACTTTGCT 59.146 50.000 0.00 0.00 0.00 3.91
289 290 0.961753 CACCTTTCCTGGGACTTTGC 59.038 55.000 0.00 0.00 0.00 3.68
290 291 1.956477 CACACCTTTCCTGGGACTTTG 59.044 52.381 0.00 0.00 0.00 2.77
291 292 1.754201 GCACACCTTTCCTGGGACTTT 60.754 52.381 0.00 0.00 0.00 2.66
292 293 0.178990 GCACACCTTTCCTGGGACTT 60.179 55.000 0.00 0.00 0.00 3.01
293 294 1.062488 AGCACACCTTTCCTGGGACT 61.062 55.000 0.00 0.00 0.00 3.85
294 295 0.690762 TAGCACACCTTTCCTGGGAC 59.309 55.000 0.00 0.00 0.00 4.46
295 296 1.668826 ATAGCACACCTTTCCTGGGA 58.331 50.000 0.00 0.00 0.00 4.37
296 297 2.514458 AATAGCACACCTTTCCTGGG 57.486 50.000 0.00 0.00 0.00 4.45
297 298 5.652014 TGATAAAATAGCACACCTTTCCTGG 59.348 40.000 0.00 0.00 0.00 4.45
298 299 6.757897 TGATAAAATAGCACACCTTTCCTG 57.242 37.500 0.00 0.00 0.00 3.86
299 300 7.775053 TTTGATAAAATAGCACACCTTTCCT 57.225 32.000 0.00 0.00 0.00 3.36
300 301 8.872845 CAATTTGATAAAATAGCACACCTTTCC 58.127 33.333 0.00 0.00 0.00 3.13
301 302 8.382875 GCAATTTGATAAAATAGCACACCTTTC 58.617 33.333 0.00 0.00 0.00 2.62
302 303 7.334171 GGCAATTTGATAAAATAGCACACCTTT 59.666 33.333 0.00 0.00 0.00 3.11
303 304 6.818142 GGCAATTTGATAAAATAGCACACCTT 59.182 34.615 0.00 0.00 0.00 3.50
304 305 6.340522 GGCAATTTGATAAAATAGCACACCT 58.659 36.000 0.00 0.00 0.00 4.00
305 306 5.523552 GGGCAATTTGATAAAATAGCACACC 59.476 40.000 0.00 0.00 0.00 4.16
306 307 5.231991 CGGGCAATTTGATAAAATAGCACAC 59.768 40.000 0.00 0.00 0.00 3.82
307 308 5.126222 TCGGGCAATTTGATAAAATAGCACA 59.874 36.000 0.00 0.00 0.00 4.57
308 309 5.587289 TCGGGCAATTTGATAAAATAGCAC 58.413 37.500 0.00 0.00 0.00 4.40
309 310 5.843673 TCGGGCAATTTGATAAAATAGCA 57.156 34.783 0.00 0.00 0.00 3.49
310 311 7.532682 TTTTCGGGCAATTTGATAAAATAGC 57.467 32.000 0.00 0.00 0.00 2.97
311 312 9.364989 TCTTTTTCGGGCAATTTGATAAAATAG 57.635 29.630 0.00 0.89 0.00 1.73
312 313 9.712305 TTCTTTTTCGGGCAATTTGATAAAATA 57.288 25.926 0.00 0.00 0.00 1.40
313 314 8.614469 TTCTTTTTCGGGCAATTTGATAAAAT 57.386 26.923 0.00 0.00 0.00 1.82
314 315 8.438676 TTTCTTTTTCGGGCAATTTGATAAAA 57.561 26.923 0.00 0.00 0.00 1.52
315 316 8.438676 TTTTCTTTTTCGGGCAATTTGATAAA 57.561 26.923 0.00 0.00 0.00 1.40
316 317 7.172361 CCTTTTCTTTTTCGGGCAATTTGATAA 59.828 33.333 0.00 0.00 0.00 1.75
317 318 6.648725 CCTTTTCTTTTTCGGGCAATTTGATA 59.351 34.615 0.00 0.00 0.00 2.15
318 319 5.469760 CCTTTTCTTTTTCGGGCAATTTGAT 59.530 36.000 0.00 0.00 0.00 2.57
319 320 4.813697 CCTTTTCTTTTTCGGGCAATTTGA 59.186 37.500 0.00 0.00 0.00 2.69
320 321 4.574421 ACCTTTTCTTTTTCGGGCAATTTG 59.426 37.500 0.00 0.00 0.00 2.32
321 322 4.574421 CACCTTTTCTTTTTCGGGCAATTT 59.426 37.500 0.00 0.00 0.00 1.82
322 323 4.126437 CACCTTTTCTTTTTCGGGCAATT 58.874 39.130 0.00 0.00 0.00 2.32
323 324 3.133901 ACACCTTTTCTTTTTCGGGCAAT 59.866 39.130 0.00 0.00 0.00 3.56
324 325 2.498078 ACACCTTTTCTTTTTCGGGCAA 59.502 40.909 0.00 0.00 0.00 4.52
325 326 2.104170 ACACCTTTTCTTTTTCGGGCA 58.896 42.857 0.00 0.00 0.00 5.36
326 327 2.159156 ACACACCTTTTCTTTTTCGGGC 60.159 45.455 0.00 0.00 0.00 6.13
327 328 3.702330 GACACACCTTTTCTTTTTCGGG 58.298 45.455 0.00 0.00 0.00 5.14
328 329 3.064271 TCGACACACCTTTTCTTTTTCGG 59.936 43.478 0.00 0.00 0.00 4.30
329 330 4.267357 TCGACACACCTTTTCTTTTTCG 57.733 40.909 0.00 0.00 0.00 3.46
330 331 5.859648 TGTTTCGACACACCTTTTCTTTTTC 59.140 36.000 0.00 0.00 0.00 2.29
331 332 5.631929 GTGTTTCGACACACCTTTTCTTTTT 59.368 36.000 21.51 0.00 41.18 1.94
332 333 5.158494 GTGTTTCGACACACCTTTTCTTTT 58.842 37.500 21.51 0.00 41.18 2.27
333 334 4.729595 GTGTTTCGACACACCTTTTCTTT 58.270 39.130 21.51 0.00 41.18 2.52
334 335 4.351131 GTGTTTCGACACACCTTTTCTT 57.649 40.909 21.51 0.00 41.18 2.52
351 352 1.292223 CGATGGACTCGGTGGTGTT 59.708 57.895 0.00 0.00 43.82 3.32
407 408 1.529713 TGTGGGGTTTCCGCTTTCC 60.530 57.895 4.62 0.00 46.01 3.13
531 536 1.309499 CGGAAGAGCTGAGGACGAGT 61.309 60.000 0.00 0.00 0.00 4.18
1309 1344 0.718904 TTGAATCCGTGAACGCATCG 59.281 50.000 0.00 0.00 38.18 3.84
1495 1534 2.230992 GCACACATGTTTATTGGGCAGA 59.769 45.455 0.00 0.00 39.59 4.26
1520 1559 3.314307 TGATTCAGGAGGTCGGTATCT 57.686 47.619 0.00 0.00 0.00 1.98
1551 1590 6.455513 CGAAAATGTCGCAGAATGTCTATTCA 60.456 38.462 0.00 0.00 44.14 2.57
1575 1616 8.298030 TGAACATATTATAGCACTGTTCATCG 57.702 34.615 12.40 0.00 46.31 3.84
1581 1622 7.806409 TGCAATGAACATATTATAGCACTGT 57.194 32.000 0.00 0.00 0.00 3.55
1603 1644 2.549633 ATGTGCAAAGAAGCGTATGC 57.450 45.000 0.00 0.00 43.24 3.14
2200 2246 4.947388 GGAAACTGGCATGAAACCATACTA 59.053 41.667 0.00 0.00 36.36 1.82
2438 2493 2.767536 GCCAAGCTTGACTGCGATA 58.232 52.632 28.05 0.00 38.13 2.92
2540 2595 3.071892 CCACACTTAGGTTCACAGGGTAA 59.928 47.826 0.00 0.00 0.00 2.85
2591 2646 1.665679 CATACTAGCACAAACCTGGCG 59.334 52.381 0.00 0.00 0.00 5.69
2649 2704 1.202855 ACAGCACAAAGTGGATCAGCT 60.203 47.619 0.00 0.00 33.64 4.24
2675 2730 4.437682 TGTTCTTCAATGACCTGAGGTT 57.562 40.909 5.21 0.00 35.25 3.50
2824 2879 2.689471 GTGCTGAATGCCATCATTACCA 59.311 45.455 0.00 0.00 42.60 3.25
2860 2915 2.415168 ACGGACTGTTAAATGTGCATCG 59.585 45.455 0.00 0.00 0.00 3.84
2866 2921 4.618920 AGAAGGACGGACTGTTAAATGT 57.381 40.909 0.00 0.00 0.00 2.71
3034 3089 2.108970 GGACGGAGGGAGTACTTGATT 58.891 52.381 0.00 0.00 0.00 2.57
3039 3094 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
3040 3095 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3041 3096 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3042 3097 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3043 3098 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3044 3099 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3045 3100 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3046 3101 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3047 3102 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3048 3103 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3049 3104 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3050 3105 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3051 3106 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3052 3107 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3053 3108 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3075 3130 9.764363 GTGACTTGATACATCCATATTTAGACA 57.236 33.333 0.00 0.00 0.00 3.41
3076 3131 9.764363 TGTGACTTGATACATCCATATTTAGAC 57.236 33.333 0.00 0.00 0.00 2.59
3117 3172 9.439500 GTCTTAGATTAGTCTAGATACGGATGT 57.561 37.037 0.00 0.00 38.17 3.06
3118 3173 9.438228 TGTCTTAGATTAGTCTAGATACGGATG 57.562 37.037 0.00 0.00 38.17 3.51
3120 3175 9.491675 CTTGTCTTAGATTAGTCTAGATACGGA 57.508 37.037 0.00 0.00 38.17 4.69
3121 3176 9.491675 TCTTGTCTTAGATTAGTCTAGATACGG 57.508 37.037 0.00 0.00 38.17 4.02
3129 3184 9.454859 CCCAAAATTCTTGTCTTAGATTAGTCT 57.545 33.333 0.00 0.00 38.52 3.24
3130 3185 9.449719 TCCCAAAATTCTTGTCTTAGATTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
3131 3186 9.232473 GTCCCAAAATTCTTGTCTTAGATTAGT 57.768 33.333 0.00 0.00 0.00 2.24
3132 3187 8.391106 CGTCCCAAAATTCTTGTCTTAGATTAG 58.609 37.037 0.00 0.00 0.00 1.73
3133 3188 7.335924 CCGTCCCAAAATTCTTGTCTTAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
3134 3189 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3135 3190 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3136 3191 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3137 3192 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3138 3193 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3139 3194 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3140 3195 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3141 3196 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3142 3197 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
3143 3198 2.749621 CTCCTCCGTCCCAAAATTCTTG 59.250 50.000 0.00 0.00 0.00 3.02
3144 3199 2.375509 ACTCCTCCGTCCCAAAATTCTT 59.624 45.455 0.00 0.00 0.00 2.52
3145 3200 1.985895 ACTCCTCCGTCCCAAAATTCT 59.014 47.619 0.00 0.00 0.00 2.40
3146 3201 2.491675 ACTCCTCCGTCCCAAAATTC 57.508 50.000 0.00 0.00 0.00 2.17
3147 3202 5.456186 CCATATACTCCTCCGTCCCAAAATT 60.456 44.000 0.00 0.00 0.00 1.82
3148 3203 4.041691 CCATATACTCCTCCGTCCCAAAAT 59.958 45.833 0.00 0.00 0.00 1.82
3149 3204 3.389983 CCATATACTCCTCCGTCCCAAAA 59.610 47.826 0.00 0.00 0.00 2.44
3150 3205 2.969950 CCATATACTCCTCCGTCCCAAA 59.030 50.000 0.00 0.00 0.00 3.28
3151 3206 2.178325 TCCATATACTCCTCCGTCCCAA 59.822 50.000 0.00 0.00 0.00 4.12
3152 3207 1.784593 TCCATATACTCCTCCGTCCCA 59.215 52.381 0.00 0.00 0.00 4.37
3153 3208 2.169330 GTCCATATACTCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
3154 3209 2.820787 CTGTCCATATACTCCTCCGTCC 59.179 54.545 0.00 0.00 0.00 4.79
3155 3210 3.488363 ACTGTCCATATACTCCTCCGTC 58.512 50.000 0.00 0.00 0.00 4.79
3156 3211 3.596940 ACTGTCCATATACTCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
3157 3212 3.256136 GGAACTGTCCATATACTCCTCCG 59.744 52.174 0.00 0.00 44.26 4.63
3158 3213 4.875561 GGAACTGTCCATATACTCCTCC 57.124 50.000 0.00 0.00 44.26 4.30
3274 3330 5.274718 ACATCAACTCGATTACTAAGAGCG 58.725 41.667 0.00 0.00 35.56 5.03
3286 3342 5.353956 CCACATGGAAATTACATCAACTCGA 59.646 40.000 0.00 0.00 37.39 4.04
3367 3451 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
3368 3452 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
3369 3453 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
3370 3454 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
3371 3455 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
3399 3483 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
3400 3484 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
3401 3485 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
3402 3486 7.063544 GCTCCGTATGTAGTCCATATTGAAATC 59.936 40.741 0.00 0.00 38.29 2.17
3403 3487 6.874134 GCTCCGTATGTAGTCCATATTGAAAT 59.126 38.462 0.00 0.00 38.29 2.17
3404 3488 6.183360 TGCTCCGTATGTAGTCCATATTGAAA 60.183 38.462 0.00 0.00 38.29 2.69
3405 3489 5.303333 TGCTCCGTATGTAGTCCATATTGAA 59.697 40.000 0.00 0.00 38.29 2.69
3406 3490 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
3407 3491 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
3408 3492 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
3409 3493 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
3410 3494 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3411 3495 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3412 3496 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3413 3497 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3414 3498 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3415 3499 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3416 3500 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3417 3501 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3418 3502 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3419 3503 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3420 3504 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3421 3505 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3422 3506 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3423 3507 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3424 3508 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3425 3509 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3457 3541 9.729281 TGAACTACATACGGATGTATATAGACA 57.271 33.333 20.64 12.87 45.42 3.41
3466 3550 9.778741 ATTTCAATATGAACTACATACGGATGT 57.221 29.630 19.12 19.12 43.12 3.06
3469 3553 9.692749 GAGATTTCAATATGAACTACATACGGA 57.307 33.333 0.00 0.00 43.12 4.69
3470 3554 9.698309 AGAGATTTCAATATGAACTACATACGG 57.302 33.333 0.00 0.00 43.12 4.02
3497 3581 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3498 3582 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3499 3583 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3500 3584 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3501 3585 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3502 3586 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3503 3587 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3504 3588 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3505 3589 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3506 3590 9.827198 TTATTACTCCCTCCGTTCCTAAATATA 57.173 33.333 0.00 0.00 0.00 0.86
3507 3591 8.731591 TTATTACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
3508 3592 8.551682 TTTATTACTCCCTCCGTTCCTAAATA 57.448 34.615 0.00 0.00 0.00 1.40
3509 3593 7.441903 TTTATTACTCCCTCCGTTCCTAAAT 57.558 36.000 0.00 0.00 0.00 1.40
3510 3594 6.872585 TTTATTACTCCCTCCGTTCCTAAA 57.127 37.500 0.00 0.00 0.00 1.85
3511 3595 7.126115 TCAATTTATTACTCCCTCCGTTCCTAA 59.874 37.037 0.00 0.00 0.00 2.69
3512 3596 6.612456 TCAATTTATTACTCCCTCCGTTCCTA 59.388 38.462 0.00 0.00 0.00 2.94
3513 3597 5.427481 TCAATTTATTACTCCCTCCGTTCCT 59.573 40.000 0.00 0.00 0.00 3.36
3514 3598 5.677567 TCAATTTATTACTCCCTCCGTTCC 58.322 41.667 0.00 0.00 0.00 3.62
3515 3599 6.293462 GCATCAATTTATTACTCCCTCCGTTC 60.293 42.308 0.00 0.00 0.00 3.95
3516 3600 5.531287 GCATCAATTTATTACTCCCTCCGTT 59.469 40.000 0.00 0.00 0.00 4.44
3517 3601 5.063880 GCATCAATTTATTACTCCCTCCGT 58.936 41.667 0.00 0.00 0.00 4.69
3518 3602 5.049405 GTGCATCAATTTATTACTCCCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
3519 3603 5.049405 CGTGCATCAATTTATTACTCCCTCC 60.049 44.000 0.00 0.00 0.00 4.30
3520 3604 5.560953 GCGTGCATCAATTTATTACTCCCTC 60.561 44.000 0.00 0.00 0.00 4.30
3521 3605 4.275936 GCGTGCATCAATTTATTACTCCCT 59.724 41.667 0.00 0.00 0.00 4.20
3522 3606 4.537015 GCGTGCATCAATTTATTACTCCC 58.463 43.478 0.00 0.00 0.00 4.30
3523 3607 4.275936 AGGCGTGCATCAATTTATTACTCC 59.724 41.667 0.00 0.00 0.00 3.85
3524 3608 5.007626 TGAGGCGTGCATCAATTTATTACTC 59.992 40.000 6.74 0.00 33.63 2.59
3525 3609 4.881273 TGAGGCGTGCATCAATTTATTACT 59.119 37.500 6.74 0.00 33.63 2.24
3526 3610 5.168526 TGAGGCGTGCATCAATTTATTAC 57.831 39.130 6.74 0.00 33.63 1.89
3542 3626 1.017387 GCCCATAGAAACTTGAGGCG 58.983 55.000 0.00 0.00 0.00 5.52
3554 3638 2.352651 CGTGTTCTGTTCATGCCCATAG 59.647 50.000 0.00 0.00 0.00 2.23
3602 3689 3.659786 TGACCGTTATCAAGACACTTGG 58.340 45.455 10.84 0.00 0.00 3.61
3604 3691 5.171476 CAGATGACCGTTATCAAGACACTT 58.829 41.667 6.11 0.00 30.82 3.16
3633 3721 7.545362 AAGTAATGCAGTACTGATGAATCAC 57.455 36.000 26.01 12.80 34.50 3.06
3638 3726 8.695456 TCAGAATAAGTAATGCAGTACTGATGA 58.305 33.333 26.01 20.18 34.50 2.92
3645 3733 7.561722 AGAGGACTCAGAATAAGTAATGCAGTA 59.438 37.037 1.75 0.00 0.00 2.74
3691 3779 2.752903 GTCACAATTTACGGATGGCCTT 59.247 45.455 3.32 0.00 0.00 4.35
3866 3954 4.511527 GAGAGGAGATCAATCAGCACAAA 58.488 43.478 0.00 0.00 0.00 2.83
3976 4064 4.556233 TCTTCATTCGATCAAGTTGACGT 58.444 39.130 19.90 0.00 0.00 4.34
4126 4214 1.675483 GGCATGTCCGCATATGAAACA 59.325 47.619 6.97 7.26 33.30 2.83
4277 4377 5.681337 TCGTGCACAAGTGAAATAATCAA 57.319 34.783 18.64 0.00 40.50 2.57
4287 4387 1.917303 GTTTTGGTTCGTGCACAAGTG 59.083 47.619 18.64 0.00 0.00 3.16
4316 4416 6.877236 TGTCTCATTAAGCACATGTGAGATA 58.123 36.000 29.80 15.48 44.77 1.98
4354 4454 8.584157 TGTGAATGAAACTTGCCTTTACAATAT 58.416 29.630 0.00 0.00 0.00 1.28
4355 4455 7.946207 TGTGAATGAAACTTGCCTTTACAATA 58.054 30.769 0.00 0.00 0.00 1.90
4356 4456 6.815089 TGTGAATGAAACTTGCCTTTACAAT 58.185 32.000 0.00 0.00 0.00 2.71
4366 4466 8.509690 ACTGTGATATCTTGTGAATGAAACTTG 58.490 33.333 3.98 0.00 0.00 3.16
4387 4487 5.820131 TCTCTAACAACAATGCAAACTGTG 58.180 37.500 0.00 0.00 0.00 3.66
4493 4664 2.566952 AGTGTTTCTTGTTGTGCTGC 57.433 45.000 0.00 0.00 0.00 5.25
4497 4668 8.589335 ACATACTAGTAGTGTTTCTTGTTGTG 57.411 34.615 13.29 0.00 0.00 3.33
4498 4669 7.871463 GGACATACTAGTAGTGTTTCTTGTTGT 59.129 37.037 13.29 3.16 0.00 3.32
4517 4688 2.197577 GCTGAAGCTCGAAGGACATAC 58.802 52.381 0.00 0.00 38.21 2.39
4518 4689 1.824852 TGCTGAAGCTCGAAGGACATA 59.175 47.619 3.61 0.00 42.66 2.29
4519 4690 0.610174 TGCTGAAGCTCGAAGGACAT 59.390 50.000 3.61 0.00 42.66 3.06
4547 4718 3.356529 ACAACTCCTTATGCCCTCTTG 57.643 47.619 0.00 0.00 0.00 3.02
4588 4765 3.644966 TGTGAAAACTGAACCAGGACT 57.355 42.857 0.00 0.00 35.51 3.85
4683 4862 8.084684 GCTGAGTCTCAAAAAGATAACCAAAAT 58.915 33.333 3.67 0.00 36.11 1.82
4714 4893 6.652481 CCTGTAAGAAAAAGAGAAGCATCTCA 59.348 38.462 20.28 0.00 46.13 3.27
4842 5021 6.721571 TTTCGCGAGAGAAGATGTTAAATT 57.278 33.333 9.59 0.00 43.69 1.82
4870 5065 2.034221 GGAACTGCCCTGTCACCC 59.966 66.667 0.00 0.00 0.00 4.61
4873 5068 3.483587 GGAGGAACTGCCCTGTCA 58.516 61.111 0.00 0.00 42.57 3.58
4881 5076 2.359975 GGCGGGTTGGAGGAACTG 60.360 66.667 0.00 0.00 41.55 3.16
4910 5106 3.292159 GGGGACACACAAACCCGC 61.292 66.667 0.00 0.00 44.09 6.13
4912 5108 1.228459 GGAGGGGACACACAAACCC 60.228 63.158 0.00 0.00 43.69 4.11
4917 5113 1.458777 ACGAAGGAGGGGACACACA 60.459 57.895 0.00 0.00 0.00 3.72
4944 5142 2.037367 TCCTCCTCCAGTCACCGG 59.963 66.667 0.00 0.00 0.00 5.28
4951 5149 2.041405 GGTCCCCTCCTCCTCCAG 60.041 72.222 0.00 0.00 0.00 3.86
4952 5150 3.695825 GGGTCCCCTCCTCCTCCA 61.696 72.222 0.00 0.00 0.00 3.86
4953 5151 4.500826 GGGGTCCCCTCCTCCTCC 62.501 77.778 21.13 0.00 41.34 4.30
4954 5152 4.862823 CGGGGTCCCCTCCTCCTC 62.863 77.778 25.34 0.00 42.67 3.71
4957 5155 4.173701 ATCCGGGGTCCCCTCCTC 62.174 72.222 25.34 0.00 42.67 3.71
4958 5156 4.173701 GATCCGGGGTCCCCTCCT 62.174 72.222 25.34 8.55 42.67 3.69
4959 5157 4.173701 AGATCCGGGGTCCCCTCC 62.174 72.222 25.34 10.59 42.67 4.30
4960 5158 2.844839 CAGATCCGGGGTCCCCTC 60.845 72.222 25.34 15.59 42.67 4.30
4963 5161 3.171388 ATGCAGATCCGGGGTCCC 61.171 66.667 3.00 0.00 0.00 4.46
4964 5162 2.427753 GATGCAGATCCGGGGTCC 59.572 66.667 3.00 0.00 0.00 4.46
4965 5163 2.029666 CGATGCAGATCCGGGGTC 59.970 66.667 0.00 0.00 0.00 4.46
4966 5164 3.550431 CCGATGCAGATCCGGGGT 61.550 66.667 0.00 0.00 39.59 4.95
4967 5165 3.550431 ACCGATGCAGATCCGGGG 61.550 66.667 19.10 0.00 46.83 5.73
4968 5166 2.104572 ATCACCGATGCAGATCCGGG 62.105 60.000 19.10 10.96 46.83 5.73
4969 5167 3.567643 ACATCACCGATGCAGATCCGG 62.568 57.143 15.14 15.14 43.15 5.14
4970 5168 0.249615 ACATCACCGATGCAGATCCG 60.250 55.000 3.90 0.00 43.15 4.18
4971 5169 1.224075 CACATCACCGATGCAGATCC 58.776 55.000 3.90 0.00 43.15 3.36
4972 5170 1.202568 TCCACATCACCGATGCAGATC 60.203 52.381 3.90 0.00 43.15 2.75
4973 5171 0.832626 TCCACATCACCGATGCAGAT 59.167 50.000 3.90 0.00 43.15 2.90
4974 5172 0.832626 ATCCACATCACCGATGCAGA 59.167 50.000 3.90 2.08 43.15 4.26
4975 5173 2.410939 CTATCCACATCACCGATGCAG 58.589 52.381 3.90 0.00 43.15 4.41
4976 5174 1.070601 CCTATCCACATCACCGATGCA 59.929 52.381 3.90 0.00 43.15 3.96
4977 5175 1.609061 CCCTATCCACATCACCGATGC 60.609 57.143 3.90 0.00 43.15 3.91
4978 5176 1.609061 GCCCTATCCACATCACCGATG 60.609 57.143 2.45 2.45 44.71 3.84
4979 5177 0.687354 GCCCTATCCACATCACCGAT 59.313 55.000 0.00 0.00 0.00 4.18
4980 5178 1.407656 GGCCCTATCCACATCACCGA 61.408 60.000 0.00 0.00 0.00 4.69
4981 5179 1.071471 GGCCCTATCCACATCACCG 59.929 63.158 0.00 0.00 0.00 4.94
4982 5180 1.071471 CGGCCCTATCCACATCACC 59.929 63.158 0.00 0.00 0.00 4.02
4983 5181 1.045407 TACGGCCCTATCCACATCAC 58.955 55.000 0.00 0.00 0.00 3.06
4984 5182 1.045407 GTACGGCCCTATCCACATCA 58.955 55.000 0.00 0.00 0.00 3.07
4985 5183 0.038526 CGTACGGCCCTATCCACATC 60.039 60.000 7.57 0.00 0.00 3.06
4986 5184 1.469335 CCGTACGGCCCTATCCACAT 61.469 60.000 23.44 0.00 0.00 3.21
4987 5185 2.129146 CCGTACGGCCCTATCCACA 61.129 63.158 23.44 0.00 0.00 4.17
4988 5186 1.679559 AACCGTACGGCCCTATCCAC 61.680 60.000 33.62 0.00 39.32 4.02
4989 5187 0.106268 TAACCGTACGGCCCTATCCA 60.106 55.000 33.62 7.38 39.32 3.41
4990 5188 0.600057 CTAACCGTACGGCCCTATCC 59.400 60.000 33.62 0.00 39.32 2.59
4991 5189 0.600057 CCTAACCGTACGGCCCTATC 59.400 60.000 33.62 0.00 39.32 2.08
4992 5190 0.106015 ACCTAACCGTACGGCCCTAT 60.106 55.000 33.62 16.80 39.32 2.57
4993 5191 0.324275 AACCTAACCGTACGGCCCTA 60.324 55.000 33.62 20.30 39.32 3.53
4994 5192 1.194121 AAACCTAACCGTACGGCCCT 61.194 55.000 33.62 20.27 39.32 5.19
4995 5193 0.534873 TAAACCTAACCGTACGGCCC 59.465 55.000 33.62 0.00 39.32 5.80
4996 5194 1.471501 CCTAAACCTAACCGTACGGCC 60.472 57.143 33.62 0.00 39.32 6.13
4997 5195 1.204704 ACCTAAACCTAACCGTACGGC 59.795 52.381 33.62 0.00 39.32 5.68
4998 5196 3.592898 AACCTAAACCTAACCGTACGG 57.407 47.619 32.22 32.22 42.03 4.02
4999 5197 4.809673 AGAAACCTAAACCTAACCGTACG 58.190 43.478 8.69 8.69 0.00 3.67
5000 5198 5.106948 GCAAGAAACCTAAACCTAACCGTAC 60.107 44.000 0.00 0.00 0.00 3.67
5001 5199 4.996758 GCAAGAAACCTAAACCTAACCGTA 59.003 41.667 0.00 0.00 0.00 4.02
5002 5200 3.817084 GCAAGAAACCTAAACCTAACCGT 59.183 43.478 0.00 0.00 0.00 4.83
5003 5201 4.414999 GCAAGAAACCTAAACCTAACCG 57.585 45.455 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.