Multiple sequence alignment - TraesCS3D01G127000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G127000 chr3D 100.000 3734 0 0 1 3734 84879575 84883308 0.000000e+00 6896.0
1 TraesCS3D01G127000 chr3D 76.030 801 139 32 170 958 84694261 84693502 2.120000e-97 366.0
2 TraesCS3D01G127000 chr3D 80.000 95 16 2 552 646 573697936 573697845 2.410000e-07 67.6
3 TraesCS3D01G127000 chr3B 92.369 2123 118 21 981 3064 133381624 133383741 0.000000e+00 2983.0
4 TraesCS3D01G127000 chr3B 94.021 485 26 2 1992 2476 704475647 704475166 0.000000e+00 732.0
5 TraesCS3D01G127000 chr3B 83.848 421 37 16 3063 3479 133383797 133384190 4.550000e-99 372.0
6 TraesCS3D01G127000 chr3B 79.064 406 55 18 1239 1642 54936237 54935860 6.190000e-63 252.0
7 TraesCS3D01G127000 chr3B 93.617 47 3 0 544 590 763766572 763766618 1.860000e-08 71.3
8 TraesCS3D01G127000 chr3A 92.780 1759 103 9 1502 3239 101575479 101573724 0.000000e+00 2523.0
9 TraesCS3D01G127000 chr3A 88.517 418 33 9 3277 3692 101572162 101571758 3.350000e-135 492.0
10 TraesCS3D01G127000 chr3A 90.638 235 13 3 1130 1358 101575811 101575580 1.690000e-78 303.0
11 TraesCS3D01G127000 chr3A 79.808 104 17 3 544 646 708337227 708337127 5.170000e-09 73.1
12 TraesCS3D01G127000 chr7D 72.823 379 74 26 551 909 25322704 25323073 6.600000e-18 102.0
13 TraesCS3D01G127000 chr7D 85.135 74 8 1 618 691 32484062 32484132 5.170000e-09 73.1
14 TraesCS3D01G127000 chr7D 79.630 108 17 4 544 650 53925064 53925167 5.170000e-09 73.1
15 TraesCS3D01G127000 chr7B 88.000 75 4 2 3610 3684 350684819 350684888 2.390000e-12 84.2
16 TraesCS3D01G127000 chr7B 94.595 37 1 1 656 691 84246354 84246390 5.210000e-04 56.5
17 TraesCS3D01G127000 chr5A 95.745 47 1 1 544 590 504785265 504785220 1.440000e-09 75.0
18 TraesCS3D01G127000 chr2D 86.301 73 5 2 3612 3684 522554230 522554297 1.440000e-09 75.0
19 TraesCS3D01G127000 chr2B 93.617 47 3 0 3101 3147 47669831 47669785 1.860000e-08 71.3
20 TraesCS3D01G127000 chr2B 100.000 32 0 0 628 659 704726909 704726878 4.030000e-05 60.2
21 TraesCS3D01G127000 chr2A 90.196 51 5 0 546 596 510994123 510994073 2.410000e-07 67.6
22 TraesCS3D01G127000 chr6D 78.641 103 18 4 286 385 155848581 155848682 8.660000e-07 65.8
23 TraesCS3D01G127000 chr4B 91.304 46 4 0 544 589 588900011 588899966 3.110000e-06 63.9
24 TraesCS3D01G127000 chr6A 88.000 50 6 0 613 662 592692802 592692753 4.030000e-05 60.2
25 TraesCS3D01G127000 chr6A 92.105 38 3 0 622 659 115349097 115349134 2.000000e-03 54.7
26 TraesCS3D01G127000 chr1D 78.723 94 17 3 546 639 101594559 101594649 4.030000e-05 60.2
27 TraesCS3D01G127000 chr1B 100.000 30 0 0 3652 3681 658729440 658729469 5.210000e-04 56.5
28 TraesCS3D01G127000 chr6B 100.000 29 0 0 315 343 6171135 6171163 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G127000 chr3D 84879575 84883308 3733 False 6896.0 6896 100.0000 1 3734 1 chr3D.!!$F1 3733
1 TraesCS3D01G127000 chr3D 84693502 84694261 759 True 366.0 366 76.0300 170 958 1 chr3D.!!$R1 788
2 TraesCS3D01G127000 chr3B 133381624 133384190 2566 False 1677.5 2983 88.1085 981 3479 2 chr3B.!!$F2 2498
3 TraesCS3D01G127000 chr3A 101571758 101575811 4053 True 1106.0 2523 90.6450 1130 3692 3 chr3A.!!$R2 2562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 877 0.033920 CAGAAAAAGGGGGCTGTTGC 59.966 55.0 0.00 0.00 38.76 4.17 F
969 971 0.034670 ACGTAGGGGTCTAGTCGCTT 60.035 55.0 9.68 3.02 0.00 4.68 F
1603 1652 0.322277 CAGCAAGATCCTGTGCCTGT 60.322 55.0 9.38 0.00 41.88 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 1897 0.039764 ACGGTCTCCACTCCTCATCA 59.960 55.0 0.0 0.0 0.0 3.07 R
2168 2224 0.312102 TATCATCAGTCAGCTCCGCG 59.688 55.0 0.0 0.0 0.0 6.46 R
3287 5022 0.322546 ACCAATTCTCCTGCGGAACC 60.323 55.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.595357 TTTTCGTTGGTTTTATTTTTGTTCAAC 57.405 25.926 0.00 0.00 0.00 3.18
31 32 7.884816 TCGTTGGTTTTATTTTTGTTCAACA 57.115 28.000 0.00 0.00 34.65 3.33
32 33 7.730778 TCGTTGGTTTTATTTTTGTTCAACAC 58.269 30.769 0.00 0.00 34.65 3.32
33 34 7.384115 TCGTTGGTTTTATTTTTGTTCAACACA 59.616 29.630 0.00 0.00 34.65 3.72
34 35 8.171840 CGTTGGTTTTATTTTTGTTCAACACAT 58.828 29.630 0.00 0.00 34.43 3.21
44 45 9.612066 ATTTTTGTTCAACACATATCAACCTTT 57.388 25.926 0.00 0.00 34.43 3.11
45 46 9.442047 TTTTTGTTCAACACATATCAACCTTTT 57.558 25.926 0.00 0.00 34.43 2.27
46 47 9.442047 TTTTGTTCAACACATATCAACCTTTTT 57.558 25.926 0.00 0.00 34.43 1.94
47 48 8.641499 TTGTTCAACACATATCAACCTTTTTC 57.359 30.769 0.00 0.00 34.43 2.29
48 49 7.776107 TGTTCAACACATATCAACCTTTTTCA 58.224 30.769 0.00 0.00 0.00 2.69
49 50 7.704472 TGTTCAACACATATCAACCTTTTTCAC 59.296 33.333 0.00 0.00 0.00 3.18
50 51 7.581213 TCAACACATATCAACCTTTTTCACT 57.419 32.000 0.00 0.00 0.00 3.41
51 52 8.684386 TCAACACATATCAACCTTTTTCACTA 57.316 30.769 0.00 0.00 0.00 2.74
52 53 8.564574 TCAACACATATCAACCTTTTTCACTAC 58.435 33.333 0.00 0.00 0.00 2.73
53 54 8.349245 CAACACATATCAACCTTTTTCACTACA 58.651 33.333 0.00 0.00 0.00 2.74
54 55 7.871853 ACACATATCAACCTTTTTCACTACAC 58.128 34.615 0.00 0.00 0.00 2.90
55 56 7.500892 ACACATATCAACCTTTTTCACTACACA 59.499 33.333 0.00 0.00 0.00 3.72
56 57 8.514594 CACATATCAACCTTTTTCACTACACAT 58.485 33.333 0.00 0.00 0.00 3.21
57 58 9.077885 ACATATCAACCTTTTTCACTACACATT 57.922 29.630 0.00 0.00 0.00 2.71
58 59 9.559958 CATATCAACCTTTTTCACTACACATTC 57.440 33.333 0.00 0.00 0.00 2.67
59 60 7.581213 ATCAACCTTTTTCACTACACATTCA 57.419 32.000 0.00 0.00 0.00 2.57
60 61 7.397892 TCAACCTTTTTCACTACACATTCAA 57.602 32.000 0.00 0.00 0.00 2.69
61 62 7.831753 TCAACCTTTTTCACTACACATTCAAA 58.168 30.769 0.00 0.00 0.00 2.69
62 63 8.307483 TCAACCTTTTTCACTACACATTCAAAA 58.693 29.630 0.00 0.00 0.00 2.44
63 64 8.930760 CAACCTTTTTCACTACACATTCAAAAA 58.069 29.630 0.00 0.00 0.00 1.94
132 133 9.685828 TTGAAAAATACAAGATTAACCCTTTCG 57.314 29.630 0.00 0.00 0.00 3.46
133 134 8.852135 TGAAAAATACAAGATTAACCCTTTCGT 58.148 29.630 0.00 0.00 0.00 3.85
134 135 9.124807 GAAAAATACAAGATTAACCCTTTCGTG 57.875 33.333 0.00 0.00 0.00 4.35
135 136 7.989416 AAATACAAGATTAACCCTTTCGTGA 57.011 32.000 0.00 0.00 0.00 4.35
136 137 7.989416 AATACAAGATTAACCCTTTCGTGAA 57.011 32.000 0.00 0.00 0.00 3.18
137 138 7.989416 ATACAAGATTAACCCTTTCGTGAAA 57.011 32.000 0.00 0.00 0.00 2.69
138 139 6.068473 ACAAGATTAACCCTTTCGTGAAAC 57.932 37.500 0.00 0.00 0.00 2.78
139 140 5.826208 ACAAGATTAACCCTTTCGTGAAACT 59.174 36.000 0.00 0.00 31.75 2.66
140 141 6.320418 ACAAGATTAACCCTTTCGTGAAACTT 59.680 34.615 0.00 0.00 31.75 2.66
141 142 7.499895 ACAAGATTAACCCTTTCGTGAAACTTA 59.500 33.333 0.00 0.00 31.75 2.24
142 143 8.512138 CAAGATTAACCCTTTCGTGAAACTTAT 58.488 33.333 0.00 0.00 31.75 1.73
143 144 9.729281 AAGATTAACCCTTTCGTGAAACTTATA 57.271 29.630 0.00 0.00 31.75 0.98
144 145 9.901172 AGATTAACCCTTTCGTGAAACTTATAT 57.099 29.630 0.00 0.00 31.75 0.86
348 350 9.832445 ACATCAGGAACATTTTATATACGAGTT 57.168 29.630 0.00 0.00 0.00 3.01
444 446 9.431887 AGTTGTACATGTTAAATACACAGTAGG 57.568 33.333 2.30 0.00 40.19 3.18
445 447 9.426837 GTTGTACATGTTAAATACACAGTAGGA 57.573 33.333 2.30 0.00 40.19 2.94
446 448 9.999660 TTGTACATGTTAAATACACAGTAGGAA 57.000 29.630 2.30 0.00 40.19 3.36
447 449 9.426837 TGTACATGTTAAATACACAGTAGGAAC 57.573 33.333 2.30 0.00 40.19 3.62
448 450 9.426837 GTACATGTTAAATACACAGTAGGAACA 57.573 33.333 2.30 0.00 40.19 3.18
450 452 9.515226 ACATGTTAAATACACAGTAGGAACATT 57.485 29.630 0.00 3.43 40.19 2.71
461 463 9.959721 ACACAGTAGGAACATTTTTATACTCAT 57.040 29.630 0.00 0.00 0.00 2.90
618 620 9.883142 AAAACACTTGATTATCACCTTTTTGAA 57.117 25.926 0.00 0.00 0.00 2.69
619 621 9.883142 AAACACTTGATTATCACCTTTTTGAAA 57.117 25.926 0.00 0.00 0.00 2.69
620 622 9.533253 AACACTTGATTATCACCTTTTTGAAAG 57.467 29.630 0.00 0.00 0.00 2.62
621 623 8.143835 ACACTTGATTATCACCTTTTTGAAAGG 58.856 33.333 15.92 15.92 43.05 3.11
622 624 7.116805 CACTTGATTATCACCTTTTTGAAAGGC 59.883 37.037 17.12 2.69 41.10 4.35
623 625 6.916360 TGATTATCACCTTTTTGAAAGGCT 57.084 33.333 17.12 7.05 41.10 4.58
624 626 7.301868 TGATTATCACCTTTTTGAAAGGCTT 57.698 32.000 17.12 0.00 41.10 4.35
625 627 7.153985 TGATTATCACCTTTTTGAAAGGCTTG 58.846 34.615 17.12 10.41 41.10 4.01
626 628 3.817709 TCACCTTTTTGAAAGGCTTGG 57.182 42.857 17.12 0.00 41.10 3.61
627 629 3.103742 TCACCTTTTTGAAAGGCTTGGT 58.896 40.909 17.12 0.00 41.10 3.67
628 630 3.517500 TCACCTTTTTGAAAGGCTTGGTT 59.482 39.130 17.12 0.00 41.10 3.67
629 631 4.712337 TCACCTTTTTGAAAGGCTTGGTTA 59.288 37.500 17.12 0.00 41.10 2.85
630 632 5.187967 TCACCTTTTTGAAAGGCTTGGTTAA 59.812 36.000 17.12 0.00 41.10 2.01
631 633 5.293324 CACCTTTTTGAAAGGCTTGGTTAAC 59.707 40.000 17.12 0.00 41.10 2.01
632 634 5.046231 ACCTTTTTGAAAGGCTTGGTTAACA 60.046 36.000 17.12 0.00 41.10 2.41
633 635 6.054941 CCTTTTTGAAAGGCTTGGTTAACAT 58.945 36.000 8.10 0.00 0.00 2.71
634 636 6.542005 CCTTTTTGAAAGGCTTGGTTAACATT 59.458 34.615 8.10 0.00 0.00 2.71
635 637 7.066887 CCTTTTTGAAAGGCTTGGTTAACATTT 59.933 33.333 8.10 0.00 0.00 2.32
636 638 7.929941 TTTTGAAAGGCTTGGTTAACATTTT 57.070 28.000 8.10 0.00 0.00 1.82
637 639 7.929941 TTTGAAAGGCTTGGTTAACATTTTT 57.070 28.000 8.10 0.00 0.00 1.94
669 671 9.474313 ACATGATTACCCTTTTATACACATTGT 57.526 29.630 0.00 0.00 0.00 2.71
866 868 7.905604 AGTGAAAAAGAAAACAGAAAAAGGG 57.094 32.000 0.00 0.00 0.00 3.95
867 869 6.878923 AGTGAAAAAGAAAACAGAAAAAGGGG 59.121 34.615 0.00 0.00 0.00 4.79
868 870 6.093495 GTGAAAAAGAAAACAGAAAAAGGGGG 59.907 38.462 0.00 0.00 0.00 5.40
869 871 3.838244 AAGAAAACAGAAAAAGGGGGC 57.162 42.857 0.00 0.00 0.00 5.80
870 872 3.046283 AGAAAACAGAAAAAGGGGGCT 57.954 42.857 0.00 0.00 0.00 5.19
871 873 2.700371 AGAAAACAGAAAAAGGGGGCTG 59.300 45.455 0.00 0.00 34.65 4.85
872 874 2.174685 AAACAGAAAAAGGGGGCTGT 57.825 45.000 0.00 0.00 42.91 4.40
873 875 2.174685 AACAGAAAAAGGGGGCTGTT 57.825 45.000 0.00 0.00 44.25 3.16
874 876 1.413118 ACAGAAAAAGGGGGCTGTTG 58.587 50.000 0.00 0.00 38.34 3.33
875 877 0.033920 CAGAAAAAGGGGGCTGTTGC 59.966 55.000 0.00 0.00 38.76 4.17
915 917 4.838486 CACCTCGCGCTCGTCCTC 62.838 72.222 5.56 0.00 36.96 3.71
917 919 4.544689 CCTCGCGCTCGTCCTCAG 62.545 72.222 5.56 0.00 36.96 3.35
918 920 3.500642 CTCGCGCTCGTCCTCAGA 61.501 66.667 5.56 0.00 36.96 3.27
919 921 3.726631 CTCGCGCTCGTCCTCAGAC 62.727 68.421 5.56 0.00 39.83 3.51
930 932 3.073735 CTCAGACGAGGCTGCCCT 61.074 66.667 16.57 1.63 46.74 5.19
931 933 1.754621 CTCAGACGAGGCTGCCCTA 60.755 63.158 16.57 0.00 43.12 3.53
932 934 2.010582 CTCAGACGAGGCTGCCCTAC 62.011 65.000 16.57 6.56 43.12 3.18
933 935 2.037367 AGACGAGGCTGCCCTACA 59.963 61.111 16.57 0.00 43.12 2.74
934 936 1.381872 AGACGAGGCTGCCCTACAT 60.382 57.895 16.57 0.00 43.12 2.29
935 937 1.068250 GACGAGGCTGCCCTACATC 59.932 63.158 16.57 4.83 43.12 3.06
936 938 1.381872 ACGAGGCTGCCCTACATCT 60.382 57.895 16.57 0.00 43.12 2.90
937 939 1.365633 CGAGGCTGCCCTACATCTC 59.634 63.158 16.57 3.23 43.12 2.75
938 940 1.365633 GAGGCTGCCCTACATCTCG 59.634 63.158 16.57 0.00 43.12 4.04
939 941 2.280457 GGCTGCCCTACATCTCGC 60.280 66.667 7.66 0.00 0.00 5.03
940 942 2.801631 GGCTGCCCTACATCTCGCT 61.802 63.158 7.66 0.00 0.00 4.93
941 943 1.593750 GCTGCCCTACATCTCGCTG 60.594 63.158 0.00 0.00 0.00 5.18
942 944 1.819229 CTGCCCTACATCTCGCTGT 59.181 57.895 0.00 0.00 0.00 4.40
943 945 1.032794 CTGCCCTACATCTCGCTGTA 58.967 55.000 0.00 0.00 0.00 2.74
944 946 1.409064 CTGCCCTACATCTCGCTGTAA 59.591 52.381 0.00 0.00 31.50 2.41
945 947 1.409064 TGCCCTACATCTCGCTGTAAG 59.591 52.381 0.00 0.00 31.50 2.34
957 959 3.920144 CTGTAAGCGAGACGTAGGG 57.080 57.895 0.00 0.00 0.00 3.53
958 960 0.381089 CTGTAAGCGAGACGTAGGGG 59.619 60.000 0.00 0.00 0.00 4.79
959 961 0.322816 TGTAAGCGAGACGTAGGGGT 60.323 55.000 0.00 0.00 0.00 4.95
960 962 0.380024 GTAAGCGAGACGTAGGGGTC 59.620 60.000 0.00 0.00 37.19 4.46
962 964 0.254178 AAGCGAGACGTAGGGGTCTA 59.746 55.000 0.00 0.00 46.85 2.59
963 965 0.179051 AGCGAGACGTAGGGGTCTAG 60.179 60.000 0.00 0.00 46.85 2.43
964 966 0.463474 GCGAGACGTAGGGGTCTAGT 60.463 60.000 0.00 0.00 46.85 2.57
965 967 1.580815 CGAGACGTAGGGGTCTAGTC 58.419 60.000 0.00 0.00 46.85 2.59
966 968 1.580815 GAGACGTAGGGGTCTAGTCG 58.419 60.000 0.00 0.00 46.85 4.18
967 969 0.463474 AGACGTAGGGGTCTAGTCGC 60.463 60.000 0.00 0.00 45.14 5.19
968 970 0.463474 GACGTAGGGGTCTAGTCGCT 60.463 60.000 4.22 7.18 34.09 4.93
969 971 0.034670 ACGTAGGGGTCTAGTCGCTT 60.035 55.000 9.68 3.02 0.00 4.68
970 972 1.101331 CGTAGGGGTCTAGTCGCTTT 58.899 55.000 9.68 0.73 0.00 3.51
971 973 1.475682 CGTAGGGGTCTAGTCGCTTTT 59.524 52.381 9.68 0.00 0.00 2.27
972 974 2.479219 CGTAGGGGTCTAGTCGCTTTTC 60.479 54.545 9.68 0.00 0.00 2.29
973 975 1.640917 AGGGGTCTAGTCGCTTTTCA 58.359 50.000 4.22 0.00 0.00 2.69
974 976 1.275573 AGGGGTCTAGTCGCTTTTCAC 59.724 52.381 4.22 0.00 0.00 3.18
975 977 1.275573 GGGGTCTAGTCGCTTTTCACT 59.724 52.381 4.22 0.00 0.00 3.41
976 978 2.289506 GGGGTCTAGTCGCTTTTCACTT 60.290 50.000 4.22 0.00 0.00 3.16
977 979 3.400255 GGGTCTAGTCGCTTTTCACTTT 58.600 45.455 0.00 0.00 0.00 2.66
978 980 3.432592 GGGTCTAGTCGCTTTTCACTTTC 59.567 47.826 0.00 0.00 0.00 2.62
979 981 4.308265 GGTCTAGTCGCTTTTCACTTTCT 58.692 43.478 0.00 0.00 0.00 2.52
980 982 4.386350 GGTCTAGTCGCTTTTCACTTTCTC 59.614 45.833 0.00 0.00 0.00 2.87
981 983 4.386350 GTCTAGTCGCTTTTCACTTTCTCC 59.614 45.833 0.00 0.00 0.00 3.71
982 984 3.477210 AGTCGCTTTTCACTTTCTCCT 57.523 42.857 0.00 0.00 0.00 3.69
983 985 3.394719 AGTCGCTTTTCACTTTCTCCTC 58.605 45.455 0.00 0.00 0.00 3.71
984 986 3.070302 AGTCGCTTTTCACTTTCTCCTCT 59.930 43.478 0.00 0.00 0.00 3.69
985 987 3.185391 GTCGCTTTTCACTTTCTCCTCTG 59.815 47.826 0.00 0.00 0.00 3.35
986 988 2.096019 CGCTTTTCACTTTCTCCTCTGC 60.096 50.000 0.00 0.00 0.00 4.26
998 1000 1.760086 CCTCTGCTCGGGTCTGGAT 60.760 63.158 0.00 0.00 0.00 3.41
1000 1002 1.403814 CTCTGCTCGGGTCTGGATTA 58.596 55.000 0.00 0.00 0.00 1.75
1012 1014 4.227197 GGTCTGGATTATGGAGAGGAGAA 58.773 47.826 0.00 0.00 0.00 2.87
1017 1019 5.781827 TGGATTATGGAGAGGAGAAGAGAA 58.218 41.667 0.00 0.00 0.00 2.87
1182 1193 1.736282 CGGTGCGCCCAAATTTTCC 60.736 57.895 11.56 0.00 0.00 3.13
1218 1239 8.637196 TTACATCCATCTATGTCGATTCTAGT 57.363 34.615 0.00 0.00 40.52 2.57
1230 1255 7.949903 TGTCGATTCTAGTCTAGCTACTTAG 57.050 40.000 1.60 0.00 0.00 2.18
1305 1332 1.308998 CCAAATAGGCCGCTTACAGG 58.691 55.000 0.00 0.00 0.00 4.00
1343 1370 4.335315 TGCTGTTATTATGCTACCTTGTGC 59.665 41.667 0.00 0.00 0.00 4.57
1360 1387 4.209452 TGTGCTCGTTTTTCTGTTCATC 57.791 40.909 0.00 0.00 0.00 2.92
1361 1388 3.625313 TGTGCTCGTTTTTCTGTTCATCA 59.375 39.130 0.00 0.00 0.00 3.07
1370 1397 7.441157 TCGTTTTTCTGTTCATCACTGATAACT 59.559 33.333 0.00 0.00 33.64 2.24
1453 1486 7.503549 CCATTATGCTCACTGGCTGATATATA 58.496 38.462 0.00 0.00 0.00 0.86
1469 1502 7.328249 GCTGATATATAAGCTCTGTCACTGAAC 59.672 40.741 14.13 0.00 36.47 3.18
1484 1517 1.334869 CTGAACCGGATTATTGCTGCC 59.665 52.381 9.46 0.00 0.00 4.85
1492 1525 3.152341 GGATTATTGCTGCCATGCTAGT 58.848 45.455 0.00 0.00 0.00 2.57
1498 1531 1.805254 CTGCCATGCTAGTTGGTGC 59.195 57.895 13.37 2.16 36.57 5.01
1500 1533 0.677731 TGCCATGCTAGTTGGTGCTC 60.678 55.000 13.37 0.92 36.57 4.26
1564 1613 7.811713 GGCCAGCTGAATATGAATCTTTTTATC 59.188 37.037 17.39 0.00 0.00 1.75
1603 1652 0.322277 CAGCAAGATCCTGTGCCTGT 60.322 55.000 9.38 0.00 41.88 4.00
1677 1726 2.267351 TGCACACCGAAATGCTGGG 61.267 57.895 6.36 0.00 42.55 4.45
1688 1737 1.708341 AATGCTGGGTCAAGTGCTTT 58.292 45.000 0.00 0.00 0.00 3.51
1722 1771 1.758514 GCTCGGGAGGGATCACAGA 60.759 63.158 0.00 0.00 0.00 3.41
1745 1794 6.212187 AGAGTGTATATGCATCTTAGCCATGA 59.788 38.462 0.19 0.00 0.00 3.07
1761 1810 2.230025 CCATGATCTTCTCTCGCCGTAT 59.770 50.000 0.00 0.00 0.00 3.06
1797 1846 2.738521 AGTTGCTGCGTAGGTGCG 60.739 61.111 1.76 0.00 37.81 5.34
1815 1864 2.819422 CGTCCAGCACTGATCATTTG 57.181 50.000 0.00 0.00 0.00 2.32
1847 1896 4.953579 GGCCATAGAAAATACCCTTGAACA 59.046 41.667 0.00 0.00 0.00 3.18
1848 1897 5.598417 GGCCATAGAAAATACCCTTGAACAT 59.402 40.000 0.00 0.00 0.00 2.71
1850 1899 6.321181 GCCATAGAAAATACCCTTGAACATGA 59.679 38.462 0.00 0.00 0.00 3.07
1854 1903 7.636150 AGAAAATACCCTTGAACATGATGAG 57.364 36.000 0.00 0.00 0.00 2.90
1855 1904 6.604795 AGAAAATACCCTTGAACATGATGAGG 59.395 38.462 0.00 0.91 0.00 3.86
1856 1905 5.715439 AATACCCTTGAACATGATGAGGA 57.285 39.130 0.00 0.00 0.00 3.71
1857 1906 3.641434 ACCCTTGAACATGATGAGGAG 57.359 47.619 0.00 0.00 0.00 3.69
1858 1907 2.915604 ACCCTTGAACATGATGAGGAGT 59.084 45.455 0.00 0.00 0.00 3.85
1859 1908 3.276857 CCCTTGAACATGATGAGGAGTG 58.723 50.000 0.00 0.00 0.00 3.51
1861 1910 3.054875 CCTTGAACATGATGAGGAGTGGA 60.055 47.826 0.00 0.00 0.00 4.02
1862 1911 3.900966 TGAACATGATGAGGAGTGGAG 57.099 47.619 0.00 0.00 0.00 3.86
1947 2003 2.352617 CCTTCAGTCAGAGCTGTGTCTC 60.353 54.545 11.09 3.39 37.70 3.36
2024 2080 5.301551 TCAGCCTTCTTTCTGTATGCAAAAA 59.698 36.000 0.00 0.00 0.00 1.94
2112 2168 4.974989 AACACGTCCGGTTCCGCC 62.975 66.667 0.00 0.00 0.00 6.13
2168 2224 9.329913 GAAACACATGTATATGTTCAAAGTGAC 57.670 33.333 1.82 0.00 45.01 3.67
2196 2252 5.539979 AGCTGACTGATGATAGCAACTATG 58.460 41.667 0.00 0.00 38.59 2.23
2216 2272 1.092348 TCTGGACGTACACATCTCCG 58.908 55.000 0.00 0.00 0.00 4.63
2231 2287 4.158394 ACATCTCCGGAATTTCCAATGTTG 59.842 41.667 15.58 9.08 35.91 3.33
2595 2743 1.351017 TCAGAAGATTTTGGGGTCGCT 59.649 47.619 0.00 0.00 0.00 4.93
2670 2823 3.556423 GGGGACGATCACAACAAAGTACT 60.556 47.826 0.00 0.00 0.00 2.73
2739 2892 3.070018 GAGGACTGAACCATGAGTGTTG 58.930 50.000 0.00 0.00 0.00 3.33
2749 2902 0.959372 ATGAGTGTTGAGCAGGCTGC 60.959 55.000 31.56 31.56 45.46 5.25
2844 2998 7.512297 TCGTGTCTATTGGTTTCGAATAAAAC 58.488 34.615 0.00 0.00 38.21 2.43
2879 3033 2.627699 TCCTGTGGGAAACTGAAAATGC 59.372 45.455 0.00 0.00 38.93 3.56
2931 3085 1.002366 ACGCATGATTGACTCGCTTC 58.998 50.000 0.00 0.00 0.00 3.86
3054 3208 2.860735 GACTTCAGGTACTAGCAATGCG 59.139 50.000 0.00 0.00 36.02 4.73
3099 3310 3.853671 GCATTTGTTAGCAAACCGATCTG 59.146 43.478 6.91 2.22 45.99 2.90
3172 3383 6.777580 AGGAGTAAAATTTAGGTATGCCCATG 59.222 38.462 0.00 0.00 34.66 3.66
3185 3396 1.880819 GCCCATGACAGCCCACTTTG 61.881 60.000 0.00 0.00 0.00 2.77
3235 3446 7.093245 TGGTAGCCCAACCTAAAATTTTATTCC 60.093 37.037 10.97 2.72 40.44 3.01
3264 4967 7.881775 AAGCTATTGGTTAACCCTTGATTAG 57.118 36.000 21.97 12.95 34.29 1.73
3265 4968 6.970191 AGCTATTGGTTAACCCTTGATTAGT 58.030 36.000 21.97 0.87 34.29 2.24
3266 4969 8.097791 AGCTATTGGTTAACCCTTGATTAGTA 57.902 34.615 21.97 2.02 34.29 1.82
3272 4975 8.849543 TGGTTAACCCTTGATTAGTATAGACT 57.150 34.615 21.97 0.00 35.89 3.24
3287 5022 7.216973 AGTATAGACTTATAAGCCTTGGACG 57.783 40.000 12.54 0.00 28.61 4.79
3392 5140 2.859992 GGCACCTTGGCTTCTACAG 58.140 57.895 0.00 0.00 40.14 2.74
3440 5188 1.609635 TTCATTCCCGCCGACAGCTA 61.610 55.000 0.00 0.00 40.39 3.32
3512 5260 5.297029 GCACTGACCTAGAAAATCCATAACC 59.703 44.000 0.00 0.00 0.00 2.85
3528 5276 3.530260 CCCCATTGTCGCCATGCC 61.530 66.667 0.00 0.00 0.00 4.40
3537 5285 0.948141 GTCGCCATGCCTAGCAGATC 60.948 60.000 0.00 0.00 43.65 2.75
3547 5295 2.831333 CCTAGCAGATCAATCGCAAGT 58.169 47.619 0.00 0.00 39.48 3.16
3548 5296 2.543012 CCTAGCAGATCAATCGCAAGTG 59.457 50.000 0.00 0.00 39.48 3.16
3552 5300 2.032204 GCAGATCAATCGCAAGTGGATC 60.032 50.000 0.00 0.00 38.52 3.36
3554 5302 2.437281 AGATCAATCGCAAGTGGATCCT 59.563 45.455 14.23 0.00 38.79 3.24
3555 5303 2.315925 TCAATCGCAAGTGGATCCTC 57.684 50.000 14.23 9.81 39.48 3.71
3565 5313 2.396713 TGGATCCTCCATTGGTGCA 58.603 52.632 14.23 0.00 42.67 4.57
3602 5351 0.601311 ACCAAGCACTGCTTCTCGTC 60.601 55.000 13.60 0.00 46.77 4.20
3603 5352 1.294659 CCAAGCACTGCTTCTCGTCC 61.295 60.000 13.60 0.00 46.77 4.79
3605 5354 0.322975 AAGCACTGCTTCTCGTCCAT 59.677 50.000 10.67 0.00 46.77 3.41
3608 5357 2.028112 AGCACTGCTTCTCGTCCATTAA 60.028 45.455 0.00 0.00 33.89 1.40
3633 5382 0.246635 AATAGCACGCTATAGCCCCG 59.753 55.000 19.00 7.80 38.20 5.73
3644 5393 3.321111 GCTATAGCCCCGCTAATAGCATA 59.679 47.826 14.13 0.88 44.62 3.14
3645 5394 3.821421 ATAGCCCCGCTAATAGCATAC 57.179 47.619 13.15 0.00 44.62 2.39
3647 5396 2.816411 AGCCCCGCTAATAGCATACTA 58.184 47.619 13.15 0.00 42.58 1.82
3648 5397 3.375699 AGCCCCGCTAATAGCATACTAT 58.624 45.455 13.15 0.00 42.58 2.12
3649 5398 3.133003 AGCCCCGCTAATAGCATACTATG 59.867 47.826 13.15 0.00 42.58 2.23
3650 5399 3.118738 GCCCCGCTAATAGCATACTATGT 60.119 47.826 13.15 0.00 42.58 2.29
3651 5400 4.623171 GCCCCGCTAATAGCATACTATGTT 60.623 45.833 13.15 0.00 42.58 2.71
3656 5405 7.595502 CCCGCTAATAGCATACTATGTTATAGC 59.404 40.741 13.15 11.77 42.58 2.97
3666 5415 9.188588 GCATACTATGTTATAGCGTGTAGAAAA 57.811 33.333 0.00 0.00 0.00 2.29
3692 5441 6.457355 TGTCTCGCTAAATAAACAGGTGTAA 58.543 36.000 0.00 0.00 0.00 2.41
3693 5442 7.101054 TGTCTCGCTAAATAAACAGGTGTAAT 58.899 34.615 0.00 0.00 0.00 1.89
3694 5443 8.252417 TGTCTCGCTAAATAAACAGGTGTAATA 58.748 33.333 0.00 0.00 0.00 0.98
3695 5444 8.753175 GTCTCGCTAAATAAACAGGTGTAATAG 58.247 37.037 0.00 0.00 0.00 1.73
3696 5445 7.437267 TCTCGCTAAATAAACAGGTGTAATAGC 59.563 37.037 7.32 7.32 0.00 2.97
3697 5446 7.042950 TCGCTAAATAAACAGGTGTAATAGCA 58.957 34.615 13.62 4.05 0.00 3.49
3698 5447 7.010738 TCGCTAAATAAACAGGTGTAATAGCAC 59.989 37.037 13.62 0.00 38.56 4.40
3699 5448 7.123830 GCTAAATAAACAGGTGTAATAGCACG 58.876 38.462 10.53 0.00 40.08 5.34
3700 5449 6.431198 AAATAAACAGGTGTAATAGCACGG 57.569 37.500 0.00 0.00 40.08 4.94
3701 5450 3.412237 AAACAGGTGTAATAGCACGGT 57.588 42.857 0.00 0.00 40.08 4.83
3702 5451 4.540359 AAACAGGTGTAATAGCACGGTA 57.460 40.909 0.00 0.00 40.08 4.02
3703 5452 3.795623 ACAGGTGTAATAGCACGGTAG 57.204 47.619 0.00 0.00 40.08 3.18
3704 5453 3.359033 ACAGGTGTAATAGCACGGTAGA 58.641 45.455 0.00 0.00 40.08 2.59
3705 5454 3.958798 ACAGGTGTAATAGCACGGTAGAT 59.041 43.478 0.00 0.00 40.08 1.98
3706 5455 4.037684 ACAGGTGTAATAGCACGGTAGATC 59.962 45.833 0.00 0.00 40.08 2.75
3707 5456 3.252701 AGGTGTAATAGCACGGTAGATCG 59.747 47.826 0.00 0.00 40.08 3.69
3708 5457 2.978489 GTGTAATAGCACGGTAGATCGC 59.022 50.000 0.00 0.00 0.00 4.58
3709 5458 2.240040 GTAATAGCACGGTAGATCGCG 58.760 52.381 0.00 0.00 0.00 5.87
3710 5459 0.666913 AATAGCACGGTAGATCGCGT 59.333 50.000 5.77 0.00 0.00 6.01
3711 5460 0.666913 ATAGCACGGTAGATCGCGTT 59.333 50.000 5.77 0.00 0.00 4.84
3712 5461 1.298602 TAGCACGGTAGATCGCGTTA 58.701 50.000 5.77 0.00 0.00 3.18
3713 5462 0.666913 AGCACGGTAGATCGCGTTAT 59.333 50.000 5.77 0.00 0.00 1.89
3714 5463 1.875514 AGCACGGTAGATCGCGTTATA 59.124 47.619 5.77 0.00 0.00 0.98
3715 5464 2.095869 AGCACGGTAGATCGCGTTATAG 60.096 50.000 5.77 0.00 0.00 1.31
3716 5465 2.240040 CACGGTAGATCGCGTTATAGC 58.760 52.381 5.77 8.54 0.00 2.97
3717 5466 1.875514 ACGGTAGATCGCGTTATAGCA 59.124 47.619 17.85 0.00 36.85 3.49
3718 5467 2.486982 ACGGTAGATCGCGTTATAGCAT 59.513 45.455 17.85 3.24 36.85 3.79
3719 5468 2.846550 CGGTAGATCGCGTTATAGCATG 59.153 50.000 17.85 2.75 36.85 4.06
3720 5469 2.599082 GGTAGATCGCGTTATAGCATGC 59.401 50.000 10.51 10.51 36.85 4.06
3721 5470 2.732412 AGATCGCGTTATAGCATGCT 57.268 45.000 25.99 25.99 36.85 3.79
3722 5471 3.850122 AGATCGCGTTATAGCATGCTA 57.150 42.857 28.72 28.72 36.85 3.49
3723 5472 4.174411 AGATCGCGTTATAGCATGCTAA 57.826 40.909 30.06 15.05 36.85 3.09
3724 5473 4.556233 AGATCGCGTTATAGCATGCTAAA 58.444 39.130 30.06 20.95 36.85 1.85
3725 5474 4.988540 AGATCGCGTTATAGCATGCTAAAA 59.011 37.500 30.06 18.65 36.85 1.52
3726 5475 4.708868 TCGCGTTATAGCATGCTAAAAG 57.291 40.909 30.06 23.91 36.85 2.27
3727 5476 3.059868 TCGCGTTATAGCATGCTAAAAGC 60.060 43.478 30.06 29.12 38.28 3.51
3728 5477 3.059597 CGCGTTATAGCATGCTAAAAGCT 60.060 43.478 31.31 21.59 38.49 3.74
3729 5478 4.214437 GCGTTATAGCATGCTAAAAGCTG 58.786 43.478 30.06 18.08 39.30 4.24
3730 5479 4.024893 GCGTTATAGCATGCTAAAAGCTGA 60.025 41.667 30.06 8.32 39.30 4.26
3731 5480 5.504010 GCGTTATAGCATGCTAAAAGCTGAA 60.504 40.000 30.06 7.53 39.30 3.02
3732 5481 6.486248 CGTTATAGCATGCTAAAAGCTGAAA 58.514 36.000 30.06 6.73 42.97 2.69
3733 5482 6.412072 CGTTATAGCATGCTAAAAGCTGAAAC 59.588 38.462 30.06 19.57 42.97 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.770828 TGTTGAACAAAAATAAAACCAACGAAA 58.229 25.926 0.00 0.00 36.42 3.46
6 7 8.221766 GTGTTGAACAAAAATAAAACCAACGAA 58.778 29.630 0.00 0.00 36.42 3.85
7 8 7.384115 TGTGTTGAACAAAAATAAAACCAACGA 59.616 29.630 0.00 0.00 35.24 3.85
8 9 7.510630 TGTGTTGAACAAAAATAAAACCAACG 58.489 30.769 0.00 0.00 35.24 4.10
18 19 9.612066 AAAGGTTGATATGTGTTGAACAAAAAT 57.388 25.926 0.00 0.00 43.61 1.82
19 20 9.442047 AAAAGGTTGATATGTGTTGAACAAAAA 57.558 25.926 0.00 0.00 43.61 1.94
20 21 9.442047 AAAAAGGTTGATATGTGTTGAACAAAA 57.558 25.926 0.00 0.00 43.61 2.44
21 22 9.092876 GAAAAAGGTTGATATGTGTTGAACAAA 57.907 29.630 0.00 0.00 43.61 2.83
22 23 8.253810 TGAAAAAGGTTGATATGTGTTGAACAA 58.746 29.630 0.00 0.00 43.61 2.83
23 24 7.704472 GTGAAAAAGGTTGATATGTGTTGAACA 59.296 33.333 0.00 0.00 44.79 3.18
24 25 7.920682 AGTGAAAAAGGTTGATATGTGTTGAAC 59.079 33.333 0.00 0.00 0.00 3.18
25 26 8.006298 AGTGAAAAAGGTTGATATGTGTTGAA 57.994 30.769 0.00 0.00 0.00 2.69
26 27 7.581213 AGTGAAAAAGGTTGATATGTGTTGA 57.419 32.000 0.00 0.00 0.00 3.18
27 28 8.349245 TGTAGTGAAAAAGGTTGATATGTGTTG 58.651 33.333 0.00 0.00 0.00 3.33
28 29 8.349983 GTGTAGTGAAAAAGGTTGATATGTGTT 58.650 33.333 0.00 0.00 0.00 3.32
29 30 7.500892 TGTGTAGTGAAAAAGGTTGATATGTGT 59.499 33.333 0.00 0.00 0.00 3.72
30 31 7.870826 TGTGTAGTGAAAAAGGTTGATATGTG 58.129 34.615 0.00 0.00 0.00 3.21
31 32 8.635765 ATGTGTAGTGAAAAAGGTTGATATGT 57.364 30.769 0.00 0.00 0.00 2.29
32 33 9.559958 GAATGTGTAGTGAAAAAGGTTGATATG 57.440 33.333 0.00 0.00 0.00 1.78
33 34 9.295825 TGAATGTGTAGTGAAAAAGGTTGATAT 57.704 29.630 0.00 0.00 0.00 1.63
34 35 8.684386 TGAATGTGTAGTGAAAAAGGTTGATA 57.316 30.769 0.00 0.00 0.00 2.15
35 36 7.581213 TGAATGTGTAGTGAAAAAGGTTGAT 57.419 32.000 0.00 0.00 0.00 2.57
36 37 7.397892 TTGAATGTGTAGTGAAAAAGGTTGA 57.602 32.000 0.00 0.00 0.00 3.18
37 38 8.472683 TTTTGAATGTGTAGTGAAAAAGGTTG 57.527 30.769 0.00 0.00 0.00 3.77
106 107 9.685828 CGAAAGGGTTAATCTTGTATTTTTCAA 57.314 29.630 0.00 0.00 0.00 2.69
107 108 8.852135 ACGAAAGGGTTAATCTTGTATTTTTCA 58.148 29.630 0.00 0.00 0.00 2.69
108 109 9.124807 CACGAAAGGGTTAATCTTGTATTTTTC 57.875 33.333 0.00 0.00 0.00 2.29
109 110 8.852135 TCACGAAAGGGTTAATCTTGTATTTTT 58.148 29.630 0.00 0.00 34.73 1.94
110 111 8.398878 TCACGAAAGGGTTAATCTTGTATTTT 57.601 30.769 0.00 0.00 34.73 1.82
111 112 7.989416 TCACGAAAGGGTTAATCTTGTATTT 57.011 32.000 0.00 0.00 34.73 1.40
112 113 7.989416 TTCACGAAAGGGTTAATCTTGTATT 57.011 32.000 0.00 0.00 34.73 1.89
113 114 7.664318 AGTTTCACGAAAGGGTTAATCTTGTAT 59.336 33.333 0.00 0.00 34.73 2.29
114 115 6.993902 AGTTTCACGAAAGGGTTAATCTTGTA 59.006 34.615 0.00 0.00 34.73 2.41
115 116 5.826208 AGTTTCACGAAAGGGTTAATCTTGT 59.174 36.000 0.00 0.00 34.73 3.16
116 117 6.313744 AGTTTCACGAAAGGGTTAATCTTG 57.686 37.500 0.00 0.00 34.73 3.02
117 118 6.954487 AAGTTTCACGAAAGGGTTAATCTT 57.046 33.333 0.00 0.00 34.73 2.40
118 119 9.901172 ATATAAGTTTCACGAAAGGGTTAATCT 57.099 29.630 0.00 0.00 34.73 2.40
322 324 9.832445 AACTCGTATATAAAATGTTCCTGATGT 57.168 29.630 0.00 0.00 0.00 3.06
418 420 9.431887 CCTACTGTGTATTTAACATGTACAACT 57.568 33.333 0.00 0.00 41.10 3.16
419 421 9.426837 TCCTACTGTGTATTTAACATGTACAAC 57.573 33.333 0.00 0.00 41.10 3.32
420 422 9.999660 TTCCTACTGTGTATTTAACATGTACAA 57.000 29.630 0.00 0.00 41.10 2.41
421 423 9.426837 GTTCCTACTGTGTATTTAACATGTACA 57.573 33.333 0.00 0.00 41.10 2.90
422 424 9.426837 TGTTCCTACTGTGTATTTAACATGTAC 57.573 33.333 0.00 0.00 41.10 2.90
424 426 9.515226 AATGTTCCTACTGTGTATTTAACATGT 57.485 29.630 0.00 0.00 41.10 3.21
435 437 9.959721 ATGAGTATAAAAATGTTCCTACTGTGT 57.040 29.630 0.00 0.00 0.00 3.72
592 594 9.883142 TTCAAAAAGGTGATAATCAAGTGTTTT 57.117 25.926 0.00 0.00 0.00 2.43
593 595 9.883142 TTTCAAAAAGGTGATAATCAAGTGTTT 57.117 25.926 0.00 0.00 0.00 2.83
594 596 9.533253 CTTTCAAAAAGGTGATAATCAAGTGTT 57.467 29.630 0.00 0.00 0.00 3.32
595 597 8.143835 CCTTTCAAAAAGGTGATAATCAAGTGT 58.856 33.333 9.81 0.00 32.78 3.55
596 598 7.116805 GCCTTTCAAAAAGGTGATAATCAAGTG 59.883 37.037 17.38 0.00 39.60 3.16
597 599 7.015584 AGCCTTTCAAAAAGGTGATAATCAAGT 59.984 33.333 17.38 0.00 39.60 3.16
598 600 7.381323 AGCCTTTCAAAAAGGTGATAATCAAG 58.619 34.615 17.38 0.00 39.60 3.02
599 601 7.301868 AGCCTTTCAAAAAGGTGATAATCAA 57.698 32.000 17.38 0.00 39.60 2.57
600 602 6.916360 AGCCTTTCAAAAAGGTGATAATCA 57.084 33.333 17.38 0.00 39.60 2.57
601 603 6.591448 CCAAGCCTTTCAAAAAGGTGATAATC 59.409 38.462 17.38 2.23 39.60 1.75
602 604 6.043127 ACCAAGCCTTTCAAAAAGGTGATAAT 59.957 34.615 17.38 0.63 39.60 1.28
603 605 5.365314 ACCAAGCCTTTCAAAAAGGTGATAA 59.635 36.000 17.38 0.00 39.60 1.75
604 606 4.898861 ACCAAGCCTTTCAAAAAGGTGATA 59.101 37.500 17.38 0.00 39.60 2.15
605 607 3.711190 ACCAAGCCTTTCAAAAAGGTGAT 59.289 39.130 17.38 4.38 39.60 3.06
606 608 3.103742 ACCAAGCCTTTCAAAAAGGTGA 58.896 40.909 17.38 0.00 39.60 4.02
607 609 3.541996 ACCAAGCCTTTCAAAAAGGTG 57.458 42.857 17.38 10.09 39.60 4.00
608 610 5.046231 TGTTAACCAAGCCTTTCAAAAAGGT 60.046 36.000 17.38 4.60 39.60 3.50
609 611 5.423886 TGTTAACCAAGCCTTTCAAAAAGG 58.576 37.500 13.05 13.05 40.39 3.11
610 612 7.552458 AATGTTAACCAAGCCTTTCAAAAAG 57.448 32.000 2.48 0.00 0.00 2.27
611 613 7.929941 AAATGTTAACCAAGCCTTTCAAAAA 57.070 28.000 2.48 0.00 0.00 1.94
612 614 7.929941 AAAATGTTAACCAAGCCTTTCAAAA 57.070 28.000 2.48 0.00 0.00 2.44
613 615 7.929941 AAAAATGTTAACCAAGCCTTTCAAA 57.070 28.000 2.48 0.00 0.00 2.69
643 645 9.474313 ACAATGTGTATAAAAGGGTAATCATGT 57.526 29.630 0.00 0.00 0.00 3.21
840 842 8.783093 CCCTTTTTCTGTTTTCTTTTTCACTTT 58.217 29.630 0.00 0.00 0.00 2.66
841 843 7.390440 CCCCTTTTTCTGTTTTCTTTTTCACTT 59.610 33.333 0.00 0.00 0.00 3.16
842 844 6.878923 CCCCTTTTTCTGTTTTCTTTTTCACT 59.121 34.615 0.00 0.00 0.00 3.41
843 845 6.093495 CCCCCTTTTTCTGTTTTCTTTTTCAC 59.907 38.462 0.00 0.00 0.00 3.18
844 846 6.176896 CCCCCTTTTTCTGTTTTCTTTTTCA 58.823 36.000 0.00 0.00 0.00 2.69
845 847 5.065988 GCCCCCTTTTTCTGTTTTCTTTTTC 59.934 40.000 0.00 0.00 0.00 2.29
846 848 4.947388 GCCCCCTTTTTCTGTTTTCTTTTT 59.053 37.500 0.00 0.00 0.00 1.94
847 849 4.227300 AGCCCCCTTTTTCTGTTTTCTTTT 59.773 37.500 0.00 0.00 0.00 2.27
848 850 3.780294 AGCCCCCTTTTTCTGTTTTCTTT 59.220 39.130 0.00 0.00 0.00 2.52
849 851 3.134623 CAGCCCCCTTTTTCTGTTTTCTT 59.865 43.478 0.00 0.00 0.00 2.52
850 852 2.700371 CAGCCCCCTTTTTCTGTTTTCT 59.300 45.455 0.00 0.00 0.00 2.52
851 853 2.434336 ACAGCCCCCTTTTTCTGTTTTC 59.566 45.455 0.00 0.00 36.48 2.29
852 854 2.477245 ACAGCCCCCTTTTTCTGTTTT 58.523 42.857 0.00 0.00 36.48 2.43
853 855 2.170397 CAACAGCCCCCTTTTTCTGTTT 59.830 45.455 3.99 0.00 44.52 2.83
854 856 1.762370 CAACAGCCCCCTTTTTCTGTT 59.238 47.619 0.00 0.00 46.88 3.16
855 857 1.413118 CAACAGCCCCCTTTTTCTGT 58.587 50.000 0.00 0.00 41.08 3.41
856 858 0.033920 GCAACAGCCCCCTTTTTCTG 59.966 55.000 0.00 0.00 0.00 3.02
857 859 1.121407 GGCAACAGCCCCCTTTTTCT 61.121 55.000 0.00 0.00 42.80 2.52
858 860 1.371183 GGCAACAGCCCCCTTTTTC 59.629 57.895 0.00 0.00 42.80 2.29
859 861 3.562250 GGCAACAGCCCCCTTTTT 58.438 55.556 0.00 0.00 42.80 1.94
898 900 4.838486 GAGGACGAGCGCGAGGTG 62.838 72.222 19.05 0.00 45.11 4.00
900 902 4.544689 CTGAGGACGAGCGCGAGG 62.545 72.222 19.05 0.00 41.64 4.63
901 903 3.500642 TCTGAGGACGAGCGCGAG 61.501 66.667 19.05 2.57 41.64 5.03
902 904 3.800863 GTCTGAGGACGAGCGCGA 61.801 66.667 19.05 0.00 41.64 5.87
913 915 1.754621 TAGGGCAGCCTCGTCTGAG 60.755 63.158 12.43 0.00 42.18 3.35
914 916 2.052690 GTAGGGCAGCCTCGTCTGA 61.053 63.158 12.43 0.00 36.19 3.27
915 917 1.680522 ATGTAGGGCAGCCTCGTCTG 61.681 60.000 12.43 0.00 37.15 3.51
916 918 1.381872 ATGTAGGGCAGCCTCGTCT 60.382 57.895 12.43 1.83 0.00 4.18
917 919 1.068250 GATGTAGGGCAGCCTCGTC 59.932 63.158 12.43 9.48 0.00 4.20
918 920 1.381872 AGATGTAGGGCAGCCTCGT 60.382 57.895 12.43 3.84 33.15 4.18
919 921 1.365633 GAGATGTAGGGCAGCCTCG 59.634 63.158 12.43 0.00 33.15 4.63
920 922 1.365633 CGAGATGTAGGGCAGCCTC 59.634 63.158 12.43 0.00 33.15 4.70
921 923 2.801631 GCGAGATGTAGGGCAGCCT 61.802 63.158 12.43 0.00 33.15 4.58
922 924 2.280457 GCGAGATGTAGGGCAGCC 60.280 66.667 1.26 1.26 33.15 4.85
923 925 1.593750 CAGCGAGATGTAGGGCAGC 60.594 63.158 0.00 0.00 0.00 5.25
924 926 1.032794 TACAGCGAGATGTAGGGCAG 58.967 55.000 0.00 0.00 34.56 4.85
925 927 1.409064 CTTACAGCGAGATGTAGGGCA 59.591 52.381 3.19 0.00 37.01 5.36
926 928 1.870167 GCTTACAGCGAGATGTAGGGC 60.870 57.143 11.52 11.06 37.01 5.19
927 929 2.141535 GCTTACAGCGAGATGTAGGG 57.858 55.000 11.52 6.14 37.01 3.53
938 940 0.248539 CCCTACGTCTCGCTTACAGC 60.249 60.000 0.00 0.00 38.02 4.40
939 941 0.381089 CCCCTACGTCTCGCTTACAG 59.619 60.000 0.00 0.00 0.00 2.74
940 942 0.322816 ACCCCTACGTCTCGCTTACA 60.323 55.000 0.00 0.00 0.00 2.41
941 943 0.380024 GACCCCTACGTCTCGCTTAC 59.620 60.000 0.00 0.00 0.00 2.34
942 944 0.254178 AGACCCCTACGTCTCGCTTA 59.746 55.000 0.00 0.00 38.83 3.09
943 945 0.254178 TAGACCCCTACGTCTCGCTT 59.746 55.000 0.00 0.00 42.19 4.68
944 946 0.179051 CTAGACCCCTACGTCTCGCT 60.179 60.000 0.00 0.00 42.19 4.93
945 947 0.463474 ACTAGACCCCTACGTCTCGC 60.463 60.000 0.00 0.00 42.19 5.03
946 948 1.580815 GACTAGACCCCTACGTCTCG 58.419 60.000 0.00 0.00 42.19 4.04
947 949 1.580815 CGACTAGACCCCTACGTCTC 58.419 60.000 0.00 0.00 42.19 3.36
948 950 0.463474 GCGACTAGACCCCTACGTCT 60.463 60.000 0.00 0.00 45.15 4.18
949 951 0.463474 AGCGACTAGACCCCTACGTC 60.463 60.000 0.00 0.00 0.00 4.34
950 952 0.034670 AAGCGACTAGACCCCTACGT 60.035 55.000 0.00 0.00 0.00 3.57
951 953 1.101331 AAAGCGACTAGACCCCTACG 58.899 55.000 0.00 0.00 0.00 3.51
952 954 2.494870 TGAAAAGCGACTAGACCCCTAC 59.505 50.000 0.00 0.00 0.00 3.18
953 955 2.494870 GTGAAAAGCGACTAGACCCCTA 59.505 50.000 0.00 0.00 0.00 3.53
954 956 1.275573 GTGAAAAGCGACTAGACCCCT 59.724 52.381 0.00 0.00 0.00 4.79
955 957 1.275573 AGTGAAAAGCGACTAGACCCC 59.724 52.381 0.00 0.00 0.00 4.95
956 958 2.745515 AGTGAAAAGCGACTAGACCC 57.254 50.000 0.00 0.00 0.00 4.46
957 959 4.308265 AGAAAGTGAAAAGCGACTAGACC 58.692 43.478 0.00 0.00 0.00 3.85
958 960 4.386350 GGAGAAAGTGAAAAGCGACTAGAC 59.614 45.833 0.00 0.00 0.00 2.59
959 961 4.281182 AGGAGAAAGTGAAAAGCGACTAGA 59.719 41.667 0.00 0.00 0.00 2.43
960 962 4.561105 AGGAGAAAGTGAAAAGCGACTAG 58.439 43.478 0.00 0.00 0.00 2.57
961 963 4.281182 AGAGGAGAAAGTGAAAAGCGACTA 59.719 41.667 0.00 0.00 0.00 2.59
962 964 3.070302 AGAGGAGAAAGTGAAAAGCGACT 59.930 43.478 0.00 0.00 0.00 4.18
963 965 3.185391 CAGAGGAGAAAGTGAAAAGCGAC 59.815 47.826 0.00 0.00 0.00 5.19
964 966 3.393800 CAGAGGAGAAAGTGAAAAGCGA 58.606 45.455 0.00 0.00 0.00 4.93
965 967 2.096019 GCAGAGGAGAAAGTGAAAAGCG 60.096 50.000 0.00 0.00 0.00 4.68
966 968 3.145286 AGCAGAGGAGAAAGTGAAAAGC 58.855 45.455 0.00 0.00 0.00 3.51
967 969 3.431572 CGAGCAGAGGAGAAAGTGAAAAG 59.568 47.826 0.00 0.00 0.00 2.27
968 970 3.393800 CGAGCAGAGGAGAAAGTGAAAA 58.606 45.455 0.00 0.00 0.00 2.29
969 971 2.289072 CCGAGCAGAGGAGAAAGTGAAA 60.289 50.000 0.00 0.00 0.00 2.69
970 972 1.273606 CCGAGCAGAGGAGAAAGTGAA 59.726 52.381 0.00 0.00 0.00 3.18
971 973 0.891373 CCGAGCAGAGGAGAAAGTGA 59.109 55.000 0.00 0.00 0.00 3.41
972 974 0.108424 CCCGAGCAGAGGAGAAAGTG 60.108 60.000 0.00 0.00 0.00 3.16
973 975 0.543174 ACCCGAGCAGAGGAGAAAGT 60.543 55.000 0.00 0.00 0.00 2.66
974 976 0.174617 GACCCGAGCAGAGGAGAAAG 59.825 60.000 0.00 0.00 0.00 2.62
975 977 0.251832 AGACCCGAGCAGAGGAGAAA 60.252 55.000 0.00 0.00 0.00 2.52
976 978 0.967887 CAGACCCGAGCAGAGGAGAA 60.968 60.000 0.00 0.00 0.00 2.87
977 979 1.379176 CAGACCCGAGCAGAGGAGA 60.379 63.158 0.00 0.00 0.00 3.71
978 980 2.422231 CCAGACCCGAGCAGAGGAG 61.422 68.421 0.00 0.00 0.00 3.69
979 981 2.230189 ATCCAGACCCGAGCAGAGGA 62.230 60.000 0.00 0.00 0.00 3.71
980 982 1.333636 AATCCAGACCCGAGCAGAGG 61.334 60.000 0.00 0.00 0.00 3.69
981 983 1.403814 TAATCCAGACCCGAGCAGAG 58.596 55.000 0.00 0.00 0.00 3.35
982 984 1.688735 CATAATCCAGACCCGAGCAGA 59.311 52.381 0.00 0.00 0.00 4.26
983 985 1.270518 CCATAATCCAGACCCGAGCAG 60.271 57.143 0.00 0.00 0.00 4.24
984 986 0.758734 CCATAATCCAGACCCGAGCA 59.241 55.000 0.00 0.00 0.00 4.26
985 987 1.001406 CTCCATAATCCAGACCCGAGC 59.999 57.143 0.00 0.00 0.00 5.03
986 988 2.560542 CTCTCCATAATCCAGACCCGAG 59.439 54.545 0.00 0.00 0.00 4.63
998 1000 4.279671 GCGATTCTCTTCTCCTCTCCATAA 59.720 45.833 0.00 0.00 0.00 1.90
1000 1002 2.627699 GCGATTCTCTTCTCCTCTCCAT 59.372 50.000 0.00 0.00 0.00 3.41
1168 1179 0.527600 GATCCGGAAAATTTGGGCGC 60.528 55.000 9.01 0.00 0.00 6.53
1182 1193 2.620251 TGGATGTAAAGGCAGATCCG 57.380 50.000 0.00 0.00 40.45 4.18
1230 1255 3.126514 CGCATGGAATGGATCTGATTAGC 59.873 47.826 0.00 0.00 46.86 3.09
1305 1332 4.510038 AACAGCAACAATTGAGATGGTC 57.490 40.909 13.59 0.00 0.00 4.02
1343 1370 5.657470 TCAGTGATGAACAGAAAAACGAG 57.343 39.130 0.00 0.00 0.00 4.18
1360 1387 2.193127 TGGGGTGGGTAGTTATCAGTG 58.807 52.381 0.00 0.00 0.00 3.66
1361 1388 2.653543 TGGGGTGGGTAGTTATCAGT 57.346 50.000 0.00 0.00 0.00 3.41
1370 1397 0.178858 TGTGAGGATTGGGGTGGGTA 60.179 55.000 0.00 0.00 0.00 3.69
1453 1486 0.034059 CCGGTTCAGTGACAGAGCTT 59.966 55.000 0.00 0.00 0.00 3.74
1469 1502 0.038892 GCATGGCAGCAATAATCCGG 60.039 55.000 0.00 0.00 0.00 5.14
1484 1517 1.442769 AACGAGCACCAACTAGCATG 58.557 50.000 0.00 0.00 0.00 4.06
1564 1613 4.549458 CTGAACTGGTTTGCAATAACTGG 58.451 43.478 0.00 0.00 0.00 4.00
1677 1726 0.598419 GCCCAGCAAAAGCACTTGAC 60.598 55.000 2.22 0.00 0.00 3.18
1688 1737 2.034687 GCTTCTCCAGCCCAGCAA 59.965 61.111 0.00 0.00 43.65 3.91
1722 1771 6.364568 TCATGGCTAAGATGCATATACACT 57.635 37.500 0.00 0.00 34.04 3.55
1745 1794 1.609555 GGTCATACGGCGAGAGAAGAT 59.390 52.381 16.62 0.00 0.00 2.40
1761 1810 0.703488 TGATGCAATCCTTGGGGTCA 59.297 50.000 0.00 0.00 44.73 4.02
1783 1832 4.735132 GGACGCACCTACGCAGCA 62.735 66.667 0.00 0.00 36.19 4.41
1784 1833 4.735132 TGGACGCACCTACGCAGC 62.735 66.667 1.15 0.00 39.86 5.25
1797 1846 1.133790 GGCAAATGATCAGTGCTGGAC 59.866 52.381 25.24 11.31 38.36 4.02
1847 1896 1.342474 ACGGTCTCCACTCCTCATCAT 60.342 52.381 0.00 0.00 0.00 2.45
1848 1897 0.039764 ACGGTCTCCACTCCTCATCA 59.960 55.000 0.00 0.00 0.00 3.07
1850 1899 0.333312 AGACGGTCTCCACTCCTCAT 59.667 55.000 4.45 0.00 0.00 2.90
1854 1903 2.159085 CCAATAAGACGGTCTCCACTCC 60.159 54.545 11.71 0.00 0.00 3.85
1855 1904 2.496470 ACCAATAAGACGGTCTCCACTC 59.504 50.000 11.71 0.00 0.00 3.51
1856 1905 2.496470 GACCAATAAGACGGTCTCCACT 59.504 50.000 11.71 0.00 46.83 4.00
1857 1906 2.889852 GACCAATAAGACGGTCTCCAC 58.110 52.381 11.71 0.00 46.83 4.02
1862 1911 1.557651 GCTCGACCAATAAGACGGTC 58.442 55.000 0.00 0.00 46.88 4.79
1947 2003 3.059597 GCCGTATCCTGATTTCATCAACG 60.060 47.826 2.94 2.94 39.11 4.10
1986 2042 4.780021 AGAAGGCTGAATCAAGTCTTAGGA 59.220 41.667 0.00 0.00 42.12 2.94
2024 2080 2.236395 AGTATTAACGCAGAAGGCACCT 59.764 45.455 0.00 0.00 45.17 4.00
2112 2168 2.932261 GGGTGGTTTTAGATAGCCCAG 58.068 52.381 0.00 0.00 34.95 4.45
2168 2224 0.312102 TATCATCAGTCAGCTCCGCG 59.688 55.000 0.00 0.00 0.00 6.46
2179 2235 5.925397 GTCCAGACATAGTTGCTATCATCAG 59.075 44.000 0.00 0.00 0.00 2.90
2196 2252 1.202154 CGGAGATGTGTACGTCCAGAC 60.202 57.143 0.00 0.00 32.40 3.51
2216 2272 3.006752 TGACCTGCAACATTGGAAATTCC 59.993 43.478 4.79 4.79 36.96 3.01
2231 2287 6.058183 AGGAATATGTATTCAACTGACCTGC 58.942 40.000 13.17 0.00 42.92 4.85
2301 2365 6.292919 GGAATATCACGCCTCATGTTACTTTC 60.293 42.308 0.00 0.00 0.00 2.62
2595 2743 7.394016 TGAGAACTACATCATTTTTGCTAGGA 58.606 34.615 0.00 0.00 0.00 2.94
2670 2823 1.065199 AGATCCTCATCGCAAAGCCAA 60.065 47.619 0.00 0.00 33.75 4.52
2752 2905 7.054124 TGATTCATCTCTTTTATGTACCCACC 58.946 38.462 0.00 0.00 0.00 4.61
2805 2959 0.651551 ACACGAGCTCGACGAGATAC 59.348 55.000 40.58 14.43 43.02 2.24
2844 2998 2.816087 CCACAGGATCACAAAGGACTTG 59.184 50.000 0.00 0.00 41.19 3.16
2953 3107 5.738909 AGATGGACTCACTTGACCTTAATG 58.261 41.667 0.00 0.00 0.00 1.90
2960 3114 4.436242 TTCGTAGATGGACTCACTTGAC 57.564 45.455 0.00 0.00 35.04 3.18
3054 3208 8.578308 TGCAAGTTATATTTTCTATGCAATGC 57.422 30.769 0.00 0.00 39.36 3.56
3088 3299 0.807667 CGAGGGAGCAGATCGGTTTG 60.808 60.000 0.00 0.00 32.93 2.93
3099 3310 0.383231 CATCCAATTTGCGAGGGAGC 59.617 55.000 0.00 0.00 31.96 4.70
3138 3349 6.070136 ACCTAAATTTTACTCCTCTCTGTCCC 60.070 42.308 0.00 0.00 0.00 4.46
3185 3396 7.307337 CCAAAATACATGAAGTTTTTGCTCCAC 60.307 37.037 0.00 0.00 37.15 4.02
3191 3402 7.117667 GGGCTACCAAAATACATGAAGTTTTTG 59.882 37.037 0.00 9.41 37.62 2.44
3212 3423 7.896496 TCTGGAATAAAATTTTAGGTTGGGCTA 59.104 33.333 15.45 0.00 0.00 3.93
3235 3446 6.208599 TCAAGGGTTAACCAATAGCTTTTCTG 59.791 38.462 25.71 8.52 43.89 3.02
3264 4967 6.015603 ACCGTCCAAGGCTTATAAGTCTATAC 60.016 42.308 19.63 15.53 40.79 1.47
3265 4968 6.073314 ACCGTCCAAGGCTTATAAGTCTATA 58.927 40.000 19.63 6.01 40.79 1.31
3266 4969 4.900054 ACCGTCCAAGGCTTATAAGTCTAT 59.100 41.667 19.63 7.81 40.79 1.98
3268 4971 3.105283 ACCGTCCAAGGCTTATAAGTCT 58.895 45.455 13.95 13.95 44.23 3.24
3269 4972 3.538634 ACCGTCCAAGGCTTATAAGTC 57.461 47.619 9.14 9.14 33.69 3.01
3270 4973 3.370209 GGAACCGTCCAAGGCTTATAAGT 60.370 47.826 13.91 0.00 44.26 2.24
3271 4974 3.203716 GGAACCGTCCAAGGCTTATAAG 58.796 50.000 8.20 8.20 44.26 1.73
3272 4975 2.419021 CGGAACCGTCCAAGGCTTATAA 60.419 50.000 0.00 0.00 45.26 0.98
3275 5010 1.294138 CGGAACCGTCCAAGGCTTA 59.706 57.895 0.00 0.00 45.26 3.09
3287 5022 0.322546 ACCAATTCTCCTGCGGAACC 60.323 55.000 0.00 0.00 0.00 3.62
3305 5040 1.571460 CAAGCACGCTCTGGTTCAC 59.429 57.895 0.00 0.00 38.59 3.18
3386 5134 5.446860 CTCCAATCCACCTAGTACTGTAGA 58.553 45.833 5.39 0.00 0.00 2.59
3388 5136 3.958798 GCTCCAATCCACCTAGTACTGTA 59.041 47.826 5.39 0.00 0.00 2.74
3389 5137 2.766828 GCTCCAATCCACCTAGTACTGT 59.233 50.000 5.39 0.00 0.00 3.55
3390 5138 2.766263 TGCTCCAATCCACCTAGTACTG 59.234 50.000 5.39 0.00 0.00 2.74
3391 5139 2.766828 GTGCTCCAATCCACCTAGTACT 59.233 50.000 0.00 0.00 0.00 2.73
3392 5140 2.500098 TGTGCTCCAATCCACCTAGTAC 59.500 50.000 0.00 0.00 0.00 2.73
3440 5188 0.668535 GCACCGAGAAGTTTTTGGCT 59.331 50.000 0.00 0.00 0.00 4.75
3464 5212 4.724697 CGCGTCCAAAGCTGCGTG 62.725 66.667 0.00 0.00 45.12 5.34
3496 5244 6.017109 CGACAATGGGGTTATGGATTTTCTAG 60.017 42.308 0.00 0.00 0.00 2.43
3498 5246 4.644685 CGACAATGGGGTTATGGATTTTCT 59.355 41.667 0.00 0.00 0.00 2.52
3528 5276 2.543012 CCACTTGCGATTGATCTGCTAG 59.457 50.000 13.06 13.06 36.34 3.42
3552 5300 0.677731 ATCGTGTGCACCAATGGAGG 60.678 55.000 15.69 0.00 0.00 4.30
3554 5302 1.018752 CGATCGTGTGCACCAATGGA 61.019 55.000 15.69 4.66 0.00 3.41
3555 5303 1.298157 ACGATCGTGTGCACCAATGG 61.298 55.000 22.06 8.79 0.00 3.16
3558 5306 1.018148 AAAACGATCGTGTGCACCAA 58.982 45.000 23.51 0.00 0.00 3.67
3615 5364 1.890894 CGGGGCTATAGCGTGCTAT 59.109 57.895 18.30 17.65 43.26 2.97
3616 5365 2.927580 GCGGGGCTATAGCGTGCTA 61.928 63.158 18.30 3.73 43.26 3.49
3617 5366 4.301027 GCGGGGCTATAGCGTGCT 62.301 66.667 18.30 0.00 43.26 4.40
3618 5367 2.430382 TTAGCGGGGCTATAGCGTGC 62.430 60.000 18.30 19.56 41.01 5.34
3619 5368 0.246635 ATTAGCGGGGCTATAGCGTG 59.753 55.000 18.30 11.24 41.01 5.34
3622 5371 1.480954 TGCTATTAGCGGGGCTATAGC 59.519 52.381 16.78 16.78 46.26 2.97
3628 5377 3.118738 ACATAGTATGCTATTAGCGGGGC 60.119 47.826 10.16 2.02 46.26 5.80
3630 5379 7.595502 GCTATAACATAGTATGCTATTAGCGGG 59.404 40.741 10.16 1.01 46.26 6.13
3633 5382 8.959058 CACGCTATAACATAGTATGCTATTAGC 58.041 37.037 16.35 16.35 42.82 3.09
3644 5393 9.595823 ACAATTTTCTACACGCTATAACATAGT 57.404 29.630 0.00 0.00 0.00 2.12
3647 5396 8.718102 AGACAATTTTCTACACGCTATAACAT 57.282 30.769 0.00 0.00 0.00 2.71
3648 5397 7.008901 CGAGACAATTTTCTACACGCTATAACA 59.991 37.037 0.00 0.00 0.00 2.41
3649 5398 7.328112 CGAGACAATTTTCTACACGCTATAAC 58.672 38.462 0.00 0.00 0.00 1.89
3650 5399 6.020121 GCGAGACAATTTTCTACACGCTATAA 60.020 38.462 15.14 0.00 40.28 0.98
3651 5400 5.457799 GCGAGACAATTTTCTACACGCTATA 59.542 40.000 15.14 0.00 40.28 1.31
3656 5405 5.756950 TTAGCGAGACAATTTTCTACACG 57.243 39.130 0.00 0.00 0.00 4.49
3666 5415 5.938125 ACACCTGTTTATTTAGCGAGACAAT 59.062 36.000 0.00 0.00 0.00 2.71
3692 5441 0.666913 AACGCGATCTACCGTGCTAT 59.333 50.000 15.93 0.00 43.11 2.97
3693 5442 1.298602 TAACGCGATCTACCGTGCTA 58.701 50.000 15.93 0.00 43.11 3.49
3694 5443 0.666913 ATAACGCGATCTACCGTGCT 59.333 50.000 15.93 0.00 43.11 4.40
3695 5444 2.240040 CTATAACGCGATCTACCGTGC 58.760 52.381 15.93 0.00 43.11 5.34
3696 5445 2.240040 GCTATAACGCGATCTACCGTG 58.760 52.381 15.93 0.00 44.66 4.94
3697 5446 1.875514 TGCTATAACGCGATCTACCGT 59.124 47.619 15.93 0.00 39.70 4.83
3698 5447 2.606717 TGCTATAACGCGATCTACCG 57.393 50.000 15.93 0.00 0.00 4.02
3699 5448 2.599082 GCATGCTATAACGCGATCTACC 59.401 50.000 15.93 0.00 0.00 3.18
3700 5449 3.502920 AGCATGCTATAACGCGATCTAC 58.497 45.455 21.21 0.00 0.00 2.59
3701 5450 3.850122 AGCATGCTATAACGCGATCTA 57.150 42.857 21.21 0.73 0.00 1.98
3702 5451 2.732412 AGCATGCTATAACGCGATCT 57.268 45.000 21.21 0.00 0.00 2.75
3703 5452 4.903638 TTTAGCATGCTATAACGCGATC 57.096 40.909 27.35 0.00 0.00 3.69
3704 5453 4.377431 GCTTTTAGCATGCTATAACGCGAT 60.377 41.667 27.35 2.34 41.89 4.58
3705 5454 3.059868 GCTTTTAGCATGCTATAACGCGA 60.060 43.478 27.35 8.57 41.89 5.87
3706 5455 3.059597 AGCTTTTAGCATGCTATAACGCG 60.060 43.478 27.35 16.95 45.56 6.01
3707 5456 4.024893 TCAGCTTTTAGCATGCTATAACGC 60.025 41.667 27.35 26.36 45.56 4.84
3708 5457 5.657470 TCAGCTTTTAGCATGCTATAACG 57.343 39.130 27.35 19.94 45.56 3.18
3709 5458 7.670894 GTTTCAGCTTTTAGCATGCTATAAC 57.329 36.000 27.35 20.05 45.56 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.