Multiple sequence alignment - TraesCS3D01G126100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G126100 chr3D 100.000 4826 0 0 1 4826 84488180 84483355 0.000000e+00 8913.0
1 TraesCS3D01G126100 chr3D 83.333 156 13 4 4252 4395 340340387 340340233 1.090000e-26 132.0
2 TraesCS3D01G126100 chr3D 78.698 169 21 8 4252 4408 19026463 19026628 1.110000e-16 99.0
3 TraesCS3D01G126100 chr3A 92.895 2280 117 15 99 2355 100835785 100833528 0.000000e+00 3271.0
4 TraesCS3D01G126100 chr3A 92.617 1368 70 16 2351 3700 100833462 100832108 0.000000e+00 1938.0
5 TraesCS3D01G126100 chr3A 90.436 596 26 11 3698 4263 100832070 100831476 0.000000e+00 756.0
6 TraesCS3D01G126100 chr3A 92.784 97 7 0 4730 4826 100831346 100831250 1.810000e-29 141.0
7 TraesCS3D01G126100 chr3B 96.508 1575 52 1 780 2354 132385928 132387499 0.000000e+00 2601.0
8 TraesCS3D01G126100 chr3B 94.721 1364 55 10 2351 3700 132387566 132388926 0.000000e+00 2104.0
9 TraesCS3D01G126100 chr3B 90.202 694 25 13 97 767 132385073 132385746 0.000000e+00 865.0
10 TraesCS3D01G126100 chr3B 94.206 535 17 7 3702 4224 132388966 132389498 0.000000e+00 804.0
11 TraesCS3D01G126100 chr3B 92.857 70 5 0 4744 4813 132392699 132392768 8.550000e-18 102.0
12 TraesCS3D01G126100 chr5D 79.759 746 81 26 2388 3094 35159833 35160547 1.220000e-130 477.0
13 TraesCS3D01G126100 chr5D 84.892 139 11 2 4252 4381 42084268 42084131 1.090000e-26 132.0
14 TraesCS3D01G126100 chr5D 100.000 30 0 0 4695 4724 511951304 511951333 6.750000e-04 56.5
15 TraesCS3D01G126100 chr5D 96.970 33 1 0 4695 4727 526115152 526115120 6.750000e-04 56.5
16 TraesCS3D01G126100 chr6D 85.459 447 38 13 449 893 195487846 195487425 1.590000e-119 440.0
17 TraesCS3D01G126100 chr6D 92.857 42 3 0 4695 4736 354841224 354841183 1.450000e-05 62.1
18 TraesCS3D01G126100 chr6D 94.872 39 1 1 4695 4733 447102941 447102978 5.220000e-05 60.2
19 TraesCS3D01G126100 chr6D 96.970 33 1 0 4695 4727 17208946 17208978 6.750000e-04 56.5
20 TraesCS3D01G126100 chr6B 85.426 446 39 14 449 893 384823028 384822608 1.590000e-119 440.0
21 TraesCS3D01G126100 chr5A 84.211 152 15 4 4252 4395 661659552 661659702 6.510000e-29 139.0
22 TraesCS3D01G126100 chr5A 94.444 36 2 0 4695 4730 532473169 532473204 6.750000e-04 56.5
23 TraesCS3D01G126100 chr7B 82.456 171 17 4 4252 4410 322488544 322488713 2.340000e-28 137.0
24 TraesCS3D01G126100 chr5B 83.333 156 13 7 4252 4395 446430536 446430690 1.090000e-26 132.0
25 TraesCS3D01G126100 chr5B 94.737 38 2 0 4695 4732 540361805 540361842 5.220000e-05 60.2
26 TraesCS3D01G126100 chr2D 81.503 173 18 4 4252 4412 56643568 56643398 3.920000e-26 130.0
27 TraesCS3D01G126100 chr4D 82.979 141 12 5 4252 4381 482161558 482161697 3.050000e-22 117.0
28 TraesCS3D01G126100 chr4A 91.463 82 7 0 4253 4334 669380397 669380316 3.950000e-21 113.0
29 TraesCS3D01G126100 chr4B 81.429 140 16 4 4252 4381 611855978 611856117 6.610000e-19 106.0
30 TraesCS3D01G126100 chr7D 97.059 34 1 0 4695 4728 86295306 86295339 1.880000e-04 58.4
31 TraesCS3D01G126100 chr2A 97.059 34 1 0 4695 4728 5636578 5636611 1.880000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G126100 chr3D 84483355 84488180 4825 True 8913.0 8913 100.0000 1 4826 1 chr3D.!!$R1 4825
1 TraesCS3D01G126100 chr3A 100831250 100835785 4535 True 1526.5 3271 92.1830 99 4826 4 chr3A.!!$R1 4727
2 TraesCS3D01G126100 chr3B 132385073 132392768 7695 False 1295.2 2601 93.6988 97 4813 5 chr3B.!!$F1 4716
3 TraesCS3D01G126100 chr5D 35159833 35160547 714 False 477.0 477 79.7590 2388 3094 1 chr5D.!!$F1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 708 0.249120 TGGCGGTGTAGATTGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51 F
1274 1476 0.036388 TCGTCCTCAAGGCATGAACC 60.036 55.000 0.00 0.00 37.67 3.62 F
1582 1784 1.666234 GAGAATGGATCGGGCGCTC 60.666 63.158 7.64 0.06 0.00 5.03 F
3073 3385 2.357637 CCACACAAACATGTCGGAGTTT 59.642 45.455 0.00 0.00 38.40 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2528 2813 0.682209 ACTGGCGACCGTACCTATGT 60.682 55.000 0.00 0.00 0.00 2.29 R
3083 3395 0.904649 CCATCCTACACAGCACCTCA 59.095 55.000 0.00 0.00 0.00 3.86 R
3161 3474 2.294791 ACACGATTTGCATTTTCCGGAA 59.705 40.909 14.35 14.35 0.00 4.30 R
4576 5411 0.165295 CAATGATGCATCCGCTAGCG 59.835 55.000 29.93 29.93 39.64 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.804944 AATTTGGTGATCCATGTTGAACA 57.195 34.783 0.00 0.00 43.91 3.18
28 29 6.363167 AATTTGGTGATCCATGTTGAACAT 57.637 33.333 4.72 4.72 43.91 2.71
40 41 5.806654 ATGTTGAACATGCCCTTAGTTTT 57.193 34.783 10.45 0.00 37.45 2.43
41 42 5.606348 TGTTGAACATGCCCTTAGTTTTT 57.394 34.783 0.00 0.00 0.00 1.94
73 74 5.612725 TTTTTGAAACTGAAGATGCCCTT 57.387 34.783 0.00 0.00 37.93 3.95
74 75 6.723298 TTTTTGAAACTGAAGATGCCCTTA 57.277 33.333 0.00 0.00 34.68 2.69
75 76 5.964958 TTTGAAACTGAAGATGCCCTTAG 57.035 39.130 0.00 0.00 34.68 2.18
76 77 4.640771 TGAAACTGAAGATGCCCTTAGT 57.359 40.909 0.00 0.00 34.68 2.24
77 78 4.985538 TGAAACTGAAGATGCCCTTAGTT 58.014 39.130 0.00 0.00 34.68 2.24
78 79 5.385198 TGAAACTGAAGATGCCCTTAGTTT 58.615 37.500 15.08 15.08 39.08 2.66
79 80 5.833131 TGAAACTGAAGATGCCCTTAGTTTT 59.167 36.000 15.65 6.50 37.98 2.43
80 81 6.323739 TGAAACTGAAGATGCCCTTAGTTTTT 59.676 34.615 15.65 5.41 37.98 1.94
146 148 2.738743 CCCAGACCAGGCACATATTTT 58.261 47.619 0.00 0.00 0.00 1.82
147 149 3.099141 CCCAGACCAGGCACATATTTTT 58.901 45.455 0.00 0.00 0.00 1.94
285 287 1.280142 CCTACAGACCGCGATCTCG 59.720 63.158 8.23 2.56 43.27 4.04
447 471 2.163815 GCTCTTACGGAGTCTGCTGTTA 59.836 50.000 0.00 0.00 43.93 2.41
584 608 2.032924 CGCCGGATCCCTTTGTTTATTC 59.967 50.000 5.05 0.00 0.00 1.75
624 648 3.492756 GCGCCAGAGAACTATTTGATCTC 59.507 47.826 0.00 0.00 42.68 2.75
678 703 4.156922 TGGTATTTTTGGCGGTGTAGATTG 59.843 41.667 0.00 0.00 0.00 2.67
679 704 3.866883 ATTTTTGGCGGTGTAGATTGG 57.133 42.857 0.00 0.00 0.00 3.16
680 705 2.279935 TTTTGGCGGTGTAGATTGGT 57.720 45.000 0.00 0.00 0.00 3.67
681 706 1.529226 TTTGGCGGTGTAGATTGGTG 58.471 50.000 0.00 0.00 0.00 4.17
682 707 0.687920 TTGGCGGTGTAGATTGGTGA 59.312 50.000 0.00 0.00 0.00 4.02
683 708 0.249120 TGGCGGTGTAGATTGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
684 709 0.535335 GGCGGTGTAGATTGGTGAGA 59.465 55.000 0.00 0.00 0.00 3.27
685 710 1.066430 GGCGGTGTAGATTGGTGAGAA 60.066 52.381 0.00 0.00 0.00 2.87
686 711 2.614481 GGCGGTGTAGATTGGTGAGAAA 60.614 50.000 0.00 0.00 0.00 2.52
687 712 2.415512 GCGGTGTAGATTGGTGAGAAAC 59.584 50.000 0.00 0.00 0.00 2.78
688 713 3.864921 GCGGTGTAGATTGGTGAGAAACT 60.865 47.826 0.00 0.00 0.00 2.66
689 714 3.679980 CGGTGTAGATTGGTGAGAAACTG 59.320 47.826 0.00 0.00 0.00 3.16
690 715 4.560716 CGGTGTAGATTGGTGAGAAACTGA 60.561 45.833 0.00 0.00 0.00 3.41
691 716 4.932200 GGTGTAGATTGGTGAGAAACTGAG 59.068 45.833 0.00 0.00 0.00 3.35
692 717 5.279506 GGTGTAGATTGGTGAGAAACTGAGA 60.280 44.000 0.00 0.00 0.00 3.27
693 718 6.223852 GTGTAGATTGGTGAGAAACTGAGAA 58.776 40.000 0.00 0.00 0.00 2.87
694 719 6.706270 GTGTAGATTGGTGAGAAACTGAGAAA 59.294 38.462 0.00 0.00 0.00 2.52
717 742 0.752658 TGACCATCTCATACGCCCAG 59.247 55.000 0.00 0.00 0.00 4.45
725 750 2.301870 TCTCATACGCCCAGTCTTTTGT 59.698 45.455 0.00 0.00 0.00 2.83
734 759 2.102925 CCCAGTCTTTTGTGCCAAACAT 59.897 45.455 0.52 0.00 38.99 2.71
744 769 6.917217 TTTGTGCCAAACATTTTTCCTAAG 57.083 33.333 0.00 0.00 38.99 2.18
760 785 2.744202 CCTAAGCTGCAGTGTAGTTTGG 59.256 50.000 18.21 15.37 0.00 3.28
762 787 1.597742 AGCTGCAGTGTAGTTTGGTG 58.402 50.000 16.64 0.00 0.00 4.17
763 788 1.140852 AGCTGCAGTGTAGTTTGGTGA 59.859 47.619 16.64 0.00 0.00 4.02
764 789 1.532868 GCTGCAGTGTAGTTTGGTGAG 59.467 52.381 16.64 0.00 0.00 3.51
765 790 2.806745 GCTGCAGTGTAGTTTGGTGAGA 60.807 50.000 16.64 0.00 0.00 3.27
766 791 3.466836 CTGCAGTGTAGTTTGGTGAGAA 58.533 45.455 5.25 0.00 0.00 2.87
767 792 3.876914 CTGCAGTGTAGTTTGGTGAGAAA 59.123 43.478 5.25 0.00 0.00 2.52
768 793 4.460263 TGCAGTGTAGTTTGGTGAGAAAT 58.540 39.130 0.00 0.00 0.00 2.17
769 794 4.887071 TGCAGTGTAGTTTGGTGAGAAATT 59.113 37.500 0.00 0.00 0.00 1.82
834 1036 2.758736 ATGAGCGAGCTATTCCCATC 57.241 50.000 0.00 0.00 0.00 3.51
995 1197 2.107141 GGCGTAGGAAGCAGCGAT 59.893 61.111 0.00 0.00 36.08 4.58
1041 1243 2.048597 CCGGCTGCTGTACGTGAA 60.049 61.111 7.82 0.00 0.00 3.18
1048 1250 2.162319 TGCTGTACGTGAAATGCAGA 57.838 45.000 0.00 0.00 32.03 4.26
1056 1258 1.160137 GTGAAATGCAGAGCGACCTT 58.840 50.000 0.00 0.00 0.00 3.50
1097 1299 2.025605 TCAGCAAGATCCAGAAAGGCAT 60.026 45.455 0.00 0.00 37.29 4.40
1102 1304 1.005097 AGATCCAGAAAGGCATGTGCA 59.995 47.619 7.36 0.00 44.36 4.57
1114 1316 3.210012 ATGTGCACTTTCCCGGCCT 62.210 57.895 19.41 0.00 0.00 5.19
1120 1322 2.200337 ACTTTCCCGGCCTGCAAAC 61.200 57.895 0.00 0.00 0.00 2.93
1208 1410 2.746362 CCTTGCAGACATCTCCAAGAAC 59.254 50.000 13.18 0.00 37.46 3.01
1274 1476 0.036388 TCGTCCTCAAGGCATGAACC 60.036 55.000 0.00 0.00 37.67 3.62
1381 1583 1.679977 GCTGCTGAATGAAGGGGCA 60.680 57.895 0.00 0.00 0.00 5.36
1399 1601 2.031157 GGCAAACGTGTACAAGCTGATT 60.031 45.455 8.83 0.00 0.00 2.57
1562 1764 6.145535 GTGTGGAATTACTTTCTTTGCAGAG 58.854 40.000 0.00 0.00 34.56 3.35
1582 1784 1.666234 GAGAATGGATCGGGCGCTC 60.666 63.158 7.64 0.06 0.00 5.03
1843 2045 8.650143 ACATAGTTATGGTGTCCTTGAATTTT 57.350 30.769 4.33 0.00 38.00 1.82
1969 2171 6.320926 TGATGGAAGTTGAAAAATGACTGACA 59.679 34.615 0.00 0.00 0.00 3.58
1976 2178 6.096705 AGTTGAAAAATGACTGACATTGTCCA 59.903 34.615 14.05 5.61 46.90 4.02
2063 2265 7.609532 AGTGGAGAAGAAATTAAGACAGGATTG 59.390 37.037 0.00 0.00 0.00 2.67
2097 2299 7.981789 TCCAGCATCAGTACTAATTAAGACTTG 59.018 37.037 0.00 0.00 0.00 3.16
2098 2300 7.981789 CCAGCATCAGTACTAATTAAGACTTGA 59.018 37.037 0.00 0.00 0.00 3.02
2144 2346 9.696917 GAGAGAACAAAATGGTGTGATAAAAAT 57.303 29.630 0.00 0.00 0.00 1.82
2199 2401 5.437060 TCATGCTACCTTGTTTCCTTATCC 58.563 41.667 0.00 0.00 0.00 2.59
2203 2405 4.822350 GCTACCTTGTTTCCTTATCCCATC 59.178 45.833 0.00 0.00 0.00 3.51
2245 2447 4.907875 TCTGGCTAGCTAGGATTATTTGGT 59.092 41.667 25.85 0.00 0.00 3.67
2355 2557 2.359900 CAGCTTGTCAGTACCATTCCC 58.640 52.381 0.00 0.00 0.00 3.97
2436 2709 2.364002 CAAGTCGGAAACCAAACCCAAT 59.636 45.455 0.00 0.00 0.00 3.16
2528 2813 3.996957 TGGTCTATATGTACCACACCCA 58.003 45.455 6.85 0.00 40.84 4.51
2642 2953 3.105959 ACCTTGATGCAAAATAGCCCT 57.894 42.857 0.00 0.00 0.00 5.19
2673 2984 2.418746 GCCTGACGTATCACATTCCACT 60.419 50.000 0.00 0.00 0.00 4.00
3073 3385 2.357637 CCACACAAACATGTCGGAGTTT 59.642 45.455 0.00 0.00 38.40 2.66
3080 3392 5.299279 ACAAACATGTCGGAGTTTTTCTGAT 59.701 36.000 0.00 0.00 42.99 2.90
3083 3395 5.248640 ACATGTCGGAGTTTTTCTGATCAT 58.751 37.500 0.00 0.00 42.99 2.45
3161 3474 1.267121 AGTTGTGTGGAGGCGATAGT 58.733 50.000 0.00 0.00 39.35 2.12
3371 3687 7.232127 ACTTAATCCAAGAATGCAGGAATATGG 59.768 37.037 0.00 0.00 37.71 2.74
3481 3802 2.472695 TGAAAGATTAGGTGTGCGCT 57.527 45.000 9.73 0.00 0.00 5.92
3513 3836 6.204108 GTCACGGAAACAAAGGAAAATCTCTA 59.796 38.462 0.00 0.00 0.00 2.43
3514 3837 6.940298 TCACGGAAACAAAGGAAAATCTCTAT 59.060 34.615 0.00 0.00 0.00 1.98
3565 3888 7.094205 CCTTTGGAATTGCATACAAAGTAGTCT 60.094 37.037 19.14 0.00 44.98 3.24
3661 3986 8.943594 TTTGAATAAAAGAGGCCCTTAAGTTA 57.056 30.769 0.00 0.00 34.00 2.24
3671 3996 5.734078 AGGCCCTTAAGTTATACCTCCATA 58.266 41.667 0.00 0.00 0.00 2.74
3684 4009 3.668821 ACCTCCATAATGGTCATCCTCA 58.331 45.455 0.00 0.00 39.03 3.86
3690 4015 2.627515 AATGGTCATCCTCATCACGG 57.372 50.000 0.00 0.00 34.23 4.94
3729 4094 2.119801 AACTCTGCAATGCTCGGAAT 57.880 45.000 6.82 0.00 0.00 3.01
3834 4200 1.679032 GCTCAGGCGTAAATGAAGGGT 60.679 52.381 0.00 0.00 0.00 4.34
4022 4414 7.609918 TGCTGGTTTCTAGTAATATGCTTGAAA 59.390 33.333 10.66 10.66 36.13 2.69
4266 4663 9.618410 GCGTGTTGCATTTTATAATAACAAATC 57.382 29.630 0.00 0.00 45.45 2.17
4289 4686 9.477484 AATCTGTATGACGTGAAAATATACTCC 57.523 33.333 0.00 0.00 0.00 3.85
4290 4687 8.002984 TCTGTATGACGTGAAAATATACTCCA 57.997 34.615 0.00 0.00 0.00 3.86
4291 4688 8.638873 TCTGTATGACGTGAAAATATACTCCAT 58.361 33.333 0.00 0.00 0.00 3.41
4292 4689 8.587952 TGTATGACGTGAAAATATACTCCATG 57.412 34.615 0.00 0.00 0.00 3.66
4293 4690 8.417884 TGTATGACGTGAAAATATACTCCATGA 58.582 33.333 0.00 0.00 0.00 3.07
4294 4691 9.424319 GTATGACGTGAAAATATACTCCATGAT 57.576 33.333 0.00 0.00 0.00 2.45
4295 4692 7.713764 TGACGTGAAAATATACTCCATGATG 57.286 36.000 0.00 0.00 0.00 3.07
4296 4693 7.496747 TGACGTGAAAATATACTCCATGATGA 58.503 34.615 0.00 0.00 0.00 2.92
4297 4694 7.984617 TGACGTGAAAATATACTCCATGATGAA 59.015 33.333 0.00 0.00 0.00 2.57
4316 4713 7.728148 TGATGAATCCAATGGTATTGATTTGG 58.272 34.615 0.00 0.00 39.98 3.28
4438 4835 4.744795 AGATAGAACATCGTCTTGCCTT 57.255 40.909 0.00 0.00 0.00 4.35
4439 4836 5.091261 AGATAGAACATCGTCTTGCCTTT 57.909 39.130 0.00 0.00 0.00 3.11
4440 4837 5.491982 AGATAGAACATCGTCTTGCCTTTT 58.508 37.500 0.00 0.00 0.00 2.27
4441 4838 6.640518 AGATAGAACATCGTCTTGCCTTTTA 58.359 36.000 0.00 0.00 0.00 1.52
4442 4839 7.103641 AGATAGAACATCGTCTTGCCTTTTAA 58.896 34.615 0.00 0.00 0.00 1.52
4445 4842 3.081804 ACATCGTCTTGCCTTTTAAGGG 58.918 45.455 10.39 0.00 46.56 3.95
4448 4845 3.558033 TCGTCTTGCCTTTTAAGGGTTT 58.442 40.909 10.39 0.00 46.56 3.27
4449 4846 3.955551 TCGTCTTGCCTTTTAAGGGTTTT 59.044 39.130 10.39 0.00 46.56 2.43
4450 4847 4.048504 CGTCTTGCCTTTTAAGGGTTTTG 58.951 43.478 10.39 0.00 46.56 2.44
4454 5289 3.375699 TGCCTTTTAAGGGTTTTGGTCA 58.624 40.909 10.39 0.00 46.56 4.02
4457 5292 5.782845 TGCCTTTTAAGGGTTTTGGTCATAT 59.217 36.000 10.39 0.00 46.56 1.78
4467 5302 5.830991 GGGTTTTGGTCATATATTAGCACCA 59.169 40.000 0.00 0.00 35.26 4.17
4478 5313 7.824289 TCATATATTAGCACCATAAACAGAGGC 59.176 37.037 0.00 0.00 0.00 4.70
4479 5314 2.309528 TAGCACCATAAACAGAGGCG 57.690 50.000 0.00 0.00 0.00 5.52
4480 5315 1.026718 AGCACCATAAACAGAGGCGC 61.027 55.000 0.00 0.00 0.00 6.53
4481 5316 1.993369 GCACCATAAACAGAGGCGCC 61.993 60.000 21.89 21.89 0.00 6.53
4483 5318 2.180204 CCATAAACAGAGGCGCCGG 61.180 63.158 23.20 17.44 0.00 6.13
4484 5319 2.180204 CATAAACAGAGGCGCCGGG 61.180 63.158 23.20 17.05 0.00 5.73
4485 5320 3.400599 ATAAACAGAGGCGCCGGGG 62.401 63.158 23.20 15.40 0.00 5.73
4497 5332 4.465446 CCGGGGCTGAGAGAGGGA 62.465 72.222 0.00 0.00 0.00 4.20
4498 5333 2.364317 CGGGGCTGAGAGAGGGAA 60.364 66.667 0.00 0.00 0.00 3.97
4499 5334 1.764054 CGGGGCTGAGAGAGGGAAT 60.764 63.158 0.00 0.00 0.00 3.01
4500 5335 1.835693 GGGGCTGAGAGAGGGAATG 59.164 63.158 0.00 0.00 0.00 2.67
4502 5337 0.179936 GGGCTGAGAGAGGGAATGTG 59.820 60.000 0.00 0.00 0.00 3.21
4503 5338 1.198713 GGCTGAGAGAGGGAATGTGA 58.801 55.000 0.00 0.00 0.00 3.58
4504 5339 1.767681 GGCTGAGAGAGGGAATGTGAT 59.232 52.381 0.00 0.00 0.00 3.06
4505 5340 2.485124 GGCTGAGAGAGGGAATGTGATG 60.485 54.545 0.00 0.00 0.00 3.07
4506 5341 2.170187 GCTGAGAGAGGGAATGTGATGT 59.830 50.000 0.00 0.00 0.00 3.06
4507 5342 3.386078 GCTGAGAGAGGGAATGTGATGTA 59.614 47.826 0.00 0.00 0.00 2.29
4508 5343 4.141846 GCTGAGAGAGGGAATGTGATGTAA 60.142 45.833 0.00 0.00 0.00 2.41
4509 5344 5.344743 TGAGAGAGGGAATGTGATGTAAC 57.655 43.478 0.00 0.00 0.00 2.50
4511 5346 4.023980 AGAGAGGGAATGTGATGTAACGA 58.976 43.478 0.00 0.00 0.00 3.85
4512 5347 4.466370 AGAGAGGGAATGTGATGTAACGAA 59.534 41.667 0.00 0.00 0.00 3.85
4513 5348 5.046591 AGAGAGGGAATGTGATGTAACGAAA 60.047 40.000 0.00 0.00 0.00 3.46
4515 5350 6.001460 AGAGGGAATGTGATGTAACGAAAAA 58.999 36.000 0.00 0.00 0.00 1.94
4516 5351 6.009115 AGGGAATGTGATGTAACGAAAAAC 57.991 37.500 0.00 0.00 0.00 2.43
4517 5352 5.768164 AGGGAATGTGATGTAACGAAAAACT 59.232 36.000 0.00 0.00 0.00 2.66
4518 5353 5.856455 GGGAATGTGATGTAACGAAAAACTG 59.144 40.000 0.00 0.00 0.00 3.16
4519 5354 6.435428 GGAATGTGATGTAACGAAAAACTGT 58.565 36.000 0.00 0.00 0.00 3.55
4520 5355 7.308109 GGGAATGTGATGTAACGAAAAACTGTA 60.308 37.037 0.00 0.00 0.00 2.74
4521 5356 7.744715 GGAATGTGATGTAACGAAAAACTGTAG 59.255 37.037 0.00 0.00 0.00 2.74
4522 5357 6.533819 TGTGATGTAACGAAAAACTGTAGG 57.466 37.500 0.00 0.00 0.00 3.18
4523 5358 5.049954 TGTGATGTAACGAAAAACTGTAGGC 60.050 40.000 0.00 0.00 0.00 3.93
4524 5359 5.049954 GTGATGTAACGAAAAACTGTAGGCA 60.050 40.000 0.00 0.00 0.00 4.75
4526 5361 3.245754 TGTAACGAAAAACTGTAGGCACG 59.754 43.478 0.00 0.00 0.00 5.34
4527 5362 1.944032 ACGAAAAACTGTAGGCACGT 58.056 45.000 0.00 0.00 0.00 4.49
4528 5363 2.282407 ACGAAAAACTGTAGGCACGTT 58.718 42.857 0.00 0.00 0.00 3.99
4529 5364 2.679336 ACGAAAAACTGTAGGCACGTTT 59.321 40.909 0.00 0.00 34.86 3.60
4530 5365 3.127376 ACGAAAAACTGTAGGCACGTTTT 59.873 39.130 0.00 0.00 40.12 2.43
4531 5366 4.332268 ACGAAAAACTGTAGGCACGTTTTA 59.668 37.500 15.19 0.00 38.85 1.52
4532 5367 4.667504 CGAAAAACTGTAGGCACGTTTTAC 59.332 41.667 15.19 0.00 38.85 2.01
4533 5368 5.502869 CGAAAAACTGTAGGCACGTTTTACT 60.503 40.000 15.19 0.00 38.85 2.24
4538 5373 3.328505 TGTAGGCACGTTTTACTAAGCC 58.671 45.455 1.25 1.25 42.31 4.35
4539 5374 2.554370 AGGCACGTTTTACTAAGCCA 57.446 45.000 11.31 0.00 44.34 4.75
4540 5375 2.853705 AGGCACGTTTTACTAAGCCAA 58.146 42.857 11.31 0.00 44.34 4.52
4541 5376 2.812011 AGGCACGTTTTACTAAGCCAAG 59.188 45.455 11.31 0.00 44.34 3.61
4542 5377 2.581637 GCACGTTTTACTAAGCCAAGC 58.418 47.619 0.00 0.00 0.00 4.01
4544 5379 3.551551 CACGTTTTACTAAGCCAAGCAC 58.448 45.455 0.00 0.00 0.00 4.40
4545 5380 3.002862 CACGTTTTACTAAGCCAAGCACA 59.997 43.478 0.00 0.00 0.00 4.57
4547 5382 4.277423 ACGTTTTACTAAGCCAAGCACATT 59.723 37.500 0.00 0.00 0.00 2.71
4548 5383 4.616802 CGTTTTACTAAGCCAAGCACATTG 59.383 41.667 0.00 0.00 38.74 2.82
4549 5384 5.561919 CGTTTTACTAAGCCAAGCACATTGA 60.562 40.000 0.00 0.00 41.83 2.57
4550 5385 6.389906 GTTTTACTAAGCCAAGCACATTGAT 58.610 36.000 0.00 0.00 41.83 2.57
4553 5388 4.813027 ACTAAGCCAAGCACATTGATTTG 58.187 39.130 0.00 0.00 41.83 2.32
4554 5389 2.754946 AGCCAAGCACATTGATTTGG 57.245 45.000 11.54 11.54 41.83 3.28
4555 5390 1.276989 AGCCAAGCACATTGATTTGGG 59.723 47.619 15.23 3.61 41.83 4.12
4556 5391 1.275856 GCCAAGCACATTGATTTGGGA 59.724 47.619 15.23 0.00 41.83 4.37
4557 5392 2.289569 GCCAAGCACATTGATTTGGGAA 60.290 45.455 15.23 0.00 41.83 3.97
4558 5393 3.806507 GCCAAGCACATTGATTTGGGAAA 60.807 43.478 15.23 0.00 41.83 3.13
4559 5394 3.747529 CCAAGCACATTGATTTGGGAAAC 59.252 43.478 9.30 0.00 41.83 2.78
4561 5396 4.961438 AGCACATTGATTTGGGAAACTT 57.039 36.364 0.00 0.00 0.00 2.66
4562 5397 4.634199 AGCACATTGATTTGGGAAACTTG 58.366 39.130 0.00 0.00 0.00 3.16
4563 5398 4.101430 AGCACATTGATTTGGGAAACTTGT 59.899 37.500 0.00 0.00 0.00 3.16
4564 5399 4.815846 GCACATTGATTTGGGAAACTTGTT 59.184 37.500 0.00 0.00 0.00 2.83
4566 5401 6.073819 GCACATTGATTTGGGAAACTTGTTAC 60.074 38.462 0.00 0.00 0.00 2.50
4567 5402 7.209475 CACATTGATTTGGGAAACTTGTTACT 58.791 34.615 0.00 0.00 0.00 2.24
4569 5404 8.576442 ACATTGATTTGGGAAACTTGTTACTAG 58.424 33.333 0.00 0.00 0.00 2.57
4570 5405 6.569179 TGATTTGGGAAACTTGTTACTAGC 57.431 37.500 0.00 0.00 0.00 3.42
4571 5406 5.180492 TGATTTGGGAAACTTGTTACTAGCG 59.820 40.000 0.00 0.00 0.00 4.26
4572 5407 3.048337 TGGGAAACTTGTTACTAGCGG 57.952 47.619 0.00 0.00 0.00 5.52
4573 5408 2.633967 TGGGAAACTTGTTACTAGCGGA 59.366 45.455 0.00 0.00 0.00 5.54
4574 5409 3.259902 GGGAAACTTGTTACTAGCGGAG 58.740 50.000 0.00 0.00 0.00 4.63
4576 5411 3.925299 GGAAACTTGTTACTAGCGGAGTC 59.075 47.826 0.00 0.00 39.81 3.36
4577 5412 2.915738 ACTTGTTACTAGCGGAGTCG 57.084 50.000 0.00 0.00 39.81 4.18
4591 5426 1.006314 GAGTCGCTAGCGGATGCATC 61.006 60.000 34.76 18.81 46.23 3.91
4598 5433 3.264947 GCTAGCGGATGCATCATTGATA 58.735 45.455 27.25 17.23 46.23 2.15
4603 5438 3.867600 GCGGATGCATCATTGATAGAGGT 60.868 47.826 27.25 0.00 42.15 3.85
4604 5439 3.683340 CGGATGCATCATTGATAGAGGTG 59.317 47.826 27.25 0.00 0.00 4.00
4605 5440 3.439476 GGATGCATCATTGATAGAGGTGC 59.561 47.826 27.25 0.00 0.00 5.01
4606 5441 2.854963 TGCATCATTGATAGAGGTGCC 58.145 47.619 0.00 0.00 0.00 5.01
4607 5442 2.173143 TGCATCATTGATAGAGGTGCCA 59.827 45.455 0.00 0.00 0.00 4.92
4611 5446 2.507058 TCATTGATAGAGGTGCCAAGCT 59.493 45.455 0.00 0.00 36.66 3.74
4612 5447 3.054139 TCATTGATAGAGGTGCCAAGCTT 60.054 43.478 0.00 0.00 33.19 3.74
4613 5448 2.408271 TGATAGAGGTGCCAAGCTTG 57.592 50.000 19.93 19.93 33.19 4.01
4622 5457 2.912566 GTGCCAAGCTTGGTTTGGGAA 61.913 52.381 38.87 17.86 44.24 3.97
4623 5458 4.380141 GTGCCAAGCTTGGTTTGGGAAA 62.380 50.000 38.87 16.65 44.24 3.13
4624 5459 2.238942 CCAAGCTTGGTTTGGGAAAC 57.761 50.000 33.46 0.00 43.43 2.78
4625 5460 1.762370 CCAAGCTTGGTTTGGGAAACT 59.238 47.619 33.46 0.00 43.43 2.66
4626 5461 2.170397 CCAAGCTTGGTTTGGGAAACTT 59.830 45.455 33.46 0.00 43.43 2.66
4627 5462 3.197265 CAAGCTTGGTTTGGGAAACTTG 58.803 45.455 19.14 0.00 41.14 3.16
4628 5463 2.466846 AGCTTGGTTTGGGAAACTTGT 58.533 42.857 0.00 0.00 41.14 3.16
4629 5464 2.837591 AGCTTGGTTTGGGAAACTTGTT 59.162 40.909 0.00 0.00 41.14 2.83
4630 5465 3.263170 AGCTTGGTTTGGGAAACTTGTTT 59.737 39.130 0.00 0.00 41.14 2.83
4631 5466 4.006989 GCTTGGTTTGGGAAACTTGTTTT 58.993 39.130 0.06 0.00 41.14 2.43
4632 5467 5.046231 AGCTTGGTTTGGGAAACTTGTTTTA 60.046 36.000 0.06 0.00 41.14 1.52
4633 5468 5.644206 GCTTGGTTTGGGAAACTTGTTTTAA 59.356 36.000 0.06 0.00 41.14 1.52
4634 5469 6.402766 GCTTGGTTTGGGAAACTTGTTTTAAC 60.403 38.462 0.06 3.99 41.14 2.01
4635 5470 5.169295 TGGTTTGGGAAACTTGTTTTAACG 58.831 37.500 0.06 0.00 41.14 3.18
4636 5471 4.567558 GGTTTGGGAAACTTGTTTTAACGG 59.432 41.667 0.06 0.00 41.14 4.44
4637 5472 5.170021 GTTTGGGAAACTTGTTTTAACGGT 58.830 37.500 0.06 0.00 38.35 4.83
4638 5473 6.328714 GTTTGGGAAACTTGTTTTAACGGTA 58.671 36.000 0.06 0.00 38.35 4.02
4639 5474 6.712179 TTGGGAAACTTGTTTTAACGGTAT 57.288 33.333 0.06 0.00 0.00 2.73
4640 5475 6.712179 TGGGAAACTTGTTTTAACGGTATT 57.288 33.333 0.06 0.00 0.00 1.89
4641 5476 7.814264 TGGGAAACTTGTTTTAACGGTATTA 57.186 32.000 0.06 0.00 0.00 0.98
4642 5477 8.230472 TGGGAAACTTGTTTTAACGGTATTAA 57.770 30.769 0.06 0.00 0.00 1.40
4643 5478 8.134261 TGGGAAACTTGTTTTAACGGTATTAAC 58.866 33.333 0.06 0.00 0.00 2.01
4644 5479 8.134261 GGGAAACTTGTTTTAACGGTATTAACA 58.866 33.333 4.98 4.98 0.00 2.41
4645 5480 9.172820 GGAAACTTGTTTTAACGGTATTAACAG 57.827 33.333 8.21 6.44 31.19 3.16
4646 5481 9.720667 GAAACTTGTTTTAACGGTATTAACAGT 57.279 29.630 8.21 6.88 35.37 3.55
4659 5494 9.631452 ACGGTATTAACAGTAAAGAAAGTAGAC 57.369 33.333 0.00 0.00 31.82 2.59
4660 5495 9.630098 CGGTATTAACAGTAAAGAAAGTAGACA 57.370 33.333 0.00 0.00 0.00 3.41
4668 5503 9.654663 ACAGTAAAGAAAGTAGACAATACCATC 57.345 33.333 0.00 0.00 0.00 3.51
4669 5504 9.877178 CAGTAAAGAAAGTAGACAATACCATCT 57.123 33.333 0.00 0.00 0.00 2.90
4670 5505 9.877178 AGTAAAGAAAGTAGACAATACCATCTG 57.123 33.333 0.00 0.00 0.00 2.90
4671 5506 9.871238 GTAAAGAAAGTAGACAATACCATCTGA 57.129 33.333 0.00 0.00 0.00 3.27
4673 5508 9.965902 AAAGAAAGTAGACAATACCATCTGAAT 57.034 29.630 0.00 0.00 0.00 2.57
4674 5509 8.954950 AGAAAGTAGACAATACCATCTGAATG 57.045 34.615 0.00 0.00 0.00 2.67
4675 5510 8.543774 AGAAAGTAGACAATACCATCTGAATGT 58.456 33.333 0.00 0.00 0.00 2.71
4676 5511 8.498054 AAAGTAGACAATACCATCTGAATGTG 57.502 34.615 0.00 0.00 0.00 3.21
4677 5512 6.051717 AGTAGACAATACCATCTGAATGTGC 58.948 40.000 0.00 0.00 0.00 4.57
4678 5513 4.847198 AGACAATACCATCTGAATGTGCA 58.153 39.130 0.00 0.00 0.00 4.57
4679 5514 5.443283 AGACAATACCATCTGAATGTGCAT 58.557 37.500 0.00 0.00 0.00 3.96
4680 5515 5.298527 AGACAATACCATCTGAATGTGCATG 59.701 40.000 0.00 0.00 0.00 4.06
4681 5516 4.951715 ACAATACCATCTGAATGTGCATGT 59.048 37.500 0.00 0.00 0.00 3.21
4682 5517 5.163591 ACAATACCATCTGAATGTGCATGTG 60.164 40.000 0.00 0.00 0.00 3.21
4683 5518 2.097036 ACCATCTGAATGTGCATGTGG 58.903 47.619 0.00 0.00 0.00 4.17
4684 5519 2.291089 ACCATCTGAATGTGCATGTGGA 60.291 45.455 0.00 0.00 0.00 4.02
4685 5520 2.956333 CCATCTGAATGTGCATGTGGAT 59.044 45.455 0.00 0.00 0.00 3.41
4686 5521 3.383505 CCATCTGAATGTGCATGTGGATT 59.616 43.478 0.00 0.00 0.00 3.01
4687 5522 4.499188 CCATCTGAATGTGCATGTGGATTC 60.499 45.833 0.00 0.55 0.00 2.52
4688 5523 3.959293 TCTGAATGTGCATGTGGATTCT 58.041 40.909 0.00 0.00 0.00 2.40
4689 5524 5.101648 TCTGAATGTGCATGTGGATTCTA 57.898 39.130 0.00 1.89 0.00 2.10
4690 5525 5.499313 TCTGAATGTGCATGTGGATTCTAA 58.501 37.500 0.00 1.67 0.00 2.10
4691 5526 5.945191 TCTGAATGTGCATGTGGATTCTAAA 59.055 36.000 0.00 0.00 0.00 1.85
4692 5527 6.094464 TCTGAATGTGCATGTGGATTCTAAAG 59.906 38.462 0.00 4.49 0.00 1.85
4693 5528 5.711506 TGAATGTGCATGTGGATTCTAAAGT 59.288 36.000 0.00 0.00 0.00 2.66
4700 5535 7.009540 GTGCATGTGGATTCTAAAGTAAAATGC 59.990 37.037 0.00 0.00 36.84 3.56
4715 5550 9.841295 AAAGTAAAATGCTCTTATATTACGGGA 57.159 29.630 0.00 0.00 0.00 5.14
4716 5551 8.828688 AGTAAAATGCTCTTATATTACGGGAC 57.171 34.615 0.00 0.00 0.00 4.46
4717 5552 8.426489 AGTAAAATGCTCTTATATTACGGGACA 58.574 33.333 0.00 0.00 0.00 4.02
4718 5553 7.730364 AAAATGCTCTTATATTACGGGACAG 57.270 36.000 0.00 0.00 0.00 3.51
4721 5556 4.523173 TGCTCTTATATTACGGGACAGAGG 59.477 45.833 0.00 0.00 0.00 3.69
4723 5558 5.322754 CTCTTATATTACGGGACAGAGGGA 58.677 45.833 0.00 0.00 0.00 4.20
4724 5559 5.322754 TCTTATATTACGGGACAGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
4725 5560 3.614568 ATATTACGGGACAGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
4727 5562 3.614568 ATTACGGGACAGAGGGAGTAT 57.385 47.619 0.00 0.00 0.00 2.12
4738 5573 5.395611 ACAGAGGGAGTATATGTTAGACCC 58.604 45.833 0.00 0.00 36.47 4.46
4775 8095 4.692625 CCATCAGAATAAGTATGCCTTCGG 59.307 45.833 0.00 0.00 34.46 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.806654 AAAACTAAGGGCATGTTCAACAT 57.193 34.783 0.00 0.00 39.91 2.71
19 20 5.606348 AAAAACTAAGGGCATGTTCAACA 57.394 34.783 0.00 0.00 0.00 3.33
51 52 5.612725 AAGGGCATCTTCAGTTTCAAAAA 57.387 34.783 0.00 0.00 0.00 1.94
52 53 5.833131 ACTAAGGGCATCTTCAGTTTCAAAA 59.167 36.000 0.00 0.00 36.93 2.44
53 54 5.385198 ACTAAGGGCATCTTCAGTTTCAAA 58.615 37.500 0.00 0.00 36.93 2.69
54 55 4.985538 ACTAAGGGCATCTTCAGTTTCAA 58.014 39.130 0.00 0.00 36.93 2.69
55 56 4.640771 ACTAAGGGCATCTTCAGTTTCA 57.359 40.909 0.00 0.00 36.93 2.69
56 57 5.966742 AAACTAAGGGCATCTTCAGTTTC 57.033 39.130 13.78 0.00 36.93 2.78
57 58 6.731292 AAAAACTAAGGGCATCTTCAGTTT 57.269 33.333 13.78 13.78 37.71 2.66
92 93 2.284847 AAATTGGGCTGGCCTGGG 60.285 61.111 21.72 0.00 36.10 4.45
93 94 0.979187 ATGAAATTGGGCTGGCCTGG 60.979 55.000 21.72 1.66 36.10 4.45
94 95 0.906775 AATGAAATTGGGCTGGCCTG 59.093 50.000 21.72 4.26 33.44 4.85
95 96 1.556451 GAAATGAAATTGGGCTGGCCT 59.444 47.619 21.72 0.00 36.10 5.19
104 105 5.039333 GGCCTGAGAATCGAAATGAAATTG 58.961 41.667 0.00 0.00 34.73 2.32
146 148 2.366301 TGGGCTCTATGCGGGGAA 60.366 61.111 0.00 0.00 44.05 3.97
147 149 2.844362 CTGGGCTCTATGCGGGGA 60.844 66.667 0.00 0.00 44.05 4.81
237 239 3.731653 GAGAAGCTCTGGCCGAGGC 62.732 68.421 21.05 14.20 40.25 4.70
245 247 0.395862 TAGGGGACGGAGAAGCTCTG 60.396 60.000 1.86 1.86 42.15 3.35
385 387 6.034044 CACGGACGAAAGAAAAACAAAAATCA 59.966 34.615 0.00 0.00 0.00 2.57
447 471 1.879430 CGACACAAACGTCCACGGT 60.879 57.895 3.81 0.00 43.60 4.83
584 608 5.688823 TGGCGCATCTCGAAATAAATAATG 58.311 37.500 10.83 0.00 41.67 1.90
596 620 0.382158 TAGTTCTCTGGCGCATCTCG 59.618 55.000 10.83 0.00 42.12 4.04
624 648 2.434884 AGCACATTCCGGACAGCG 60.435 61.111 1.83 0.00 0.00 5.18
678 703 4.271291 GTCACAGTTTCTCAGTTTCTCACC 59.729 45.833 0.00 0.00 0.00 4.02
679 704 4.271291 GGTCACAGTTTCTCAGTTTCTCAC 59.729 45.833 0.00 0.00 0.00 3.51
680 705 4.081142 TGGTCACAGTTTCTCAGTTTCTCA 60.081 41.667 0.00 0.00 0.00 3.27
681 706 4.442706 TGGTCACAGTTTCTCAGTTTCTC 58.557 43.478 0.00 0.00 0.00 2.87
682 707 4.487714 TGGTCACAGTTTCTCAGTTTCT 57.512 40.909 0.00 0.00 0.00 2.52
683 708 5.059833 AGATGGTCACAGTTTCTCAGTTTC 58.940 41.667 0.00 0.00 0.00 2.78
684 709 5.041191 AGATGGTCACAGTTTCTCAGTTT 57.959 39.130 0.00 0.00 0.00 2.66
685 710 4.101585 TGAGATGGTCACAGTTTCTCAGTT 59.898 41.667 0.00 0.00 36.09 3.16
686 711 3.643320 TGAGATGGTCACAGTTTCTCAGT 59.357 43.478 0.00 0.00 36.09 3.41
687 712 4.263018 TGAGATGGTCACAGTTTCTCAG 57.737 45.455 0.00 0.00 36.09 3.35
688 713 4.897509 ATGAGATGGTCACAGTTTCTCA 57.102 40.909 3.67 3.67 41.74 3.27
689 714 4.800993 CGTATGAGATGGTCACAGTTTCTC 59.199 45.833 0.00 0.00 38.28 2.87
690 715 4.748892 CGTATGAGATGGTCACAGTTTCT 58.251 43.478 0.00 0.00 38.28 2.52
691 716 3.307242 GCGTATGAGATGGTCACAGTTTC 59.693 47.826 0.00 0.00 38.28 2.78
692 717 3.262420 GCGTATGAGATGGTCACAGTTT 58.738 45.455 0.00 0.00 38.28 2.66
693 718 2.418746 GGCGTATGAGATGGTCACAGTT 60.419 50.000 0.00 0.00 38.28 3.16
694 719 1.137086 GGCGTATGAGATGGTCACAGT 59.863 52.381 0.00 0.00 38.28 3.55
725 750 4.630111 CAGCTTAGGAAAAATGTTTGGCA 58.370 39.130 0.00 0.00 0.00 4.92
734 759 4.714632 ACTACACTGCAGCTTAGGAAAAA 58.285 39.130 15.27 0.00 0.00 1.94
744 769 1.532868 CTCACCAAACTACACTGCAGC 59.467 52.381 15.27 0.00 0.00 5.25
834 1036 1.577328 AATCTTTGCGTGTGGCTCCG 61.577 55.000 0.00 0.00 44.05 4.63
982 1184 1.001293 CATGGCTATCGCTGCTTCCTA 59.999 52.381 0.00 0.00 36.09 2.94
992 1194 2.016704 GACGACGCCATGGCTATCG 61.017 63.158 38.20 38.20 45.98 2.92
995 1197 2.997075 AACGACGACGCCATGGCTA 61.997 57.895 33.07 0.00 43.96 3.93
1038 1240 1.159285 CAAGGTCGCTCTGCATTTCA 58.841 50.000 0.00 0.00 0.00 2.69
1041 1243 0.322975 ACTCAAGGTCGCTCTGCATT 59.677 50.000 0.00 0.00 0.00 3.56
1056 1258 4.329545 GCGTTGGCCTGGGACTCA 62.330 66.667 3.32 0.00 0.00 3.41
1097 1299 3.884774 AGGCCGGGAAAGTGCACA 61.885 61.111 21.04 0.00 0.00 4.57
1102 1304 2.197324 TTTGCAGGCCGGGAAAGT 59.803 55.556 18.09 0.00 0.00 2.66
1208 1410 4.680237 TGCTTGCGGACCTCGTGG 62.680 66.667 0.99 0.99 41.72 4.94
1274 1476 0.310854 GTTGAACCAAGGAAGCGTGG 59.689 55.000 0.00 0.00 41.00 4.94
1381 1583 2.552315 CCCAATCAGCTTGTACACGTTT 59.448 45.455 0.00 0.00 32.61 3.60
1562 1764 1.666234 GCGCCCGATCCATTCTCTC 60.666 63.158 0.00 0.00 0.00 3.20
1582 1784 3.071602 TCTGTTTCTCCTCCAAGTCCTTG 59.928 47.826 0.00 0.00 40.13 3.61
1649 1851 0.685785 TGTGGTCAAGCAGCCCAAAA 60.686 50.000 0.00 0.00 0.00 2.44
1969 2171 9.039165 ACCTCATTATCATTTTTCTTGGACAAT 57.961 29.630 0.00 0.00 0.00 2.71
1976 2178 9.246670 TCACATCACCTCATTATCATTTTTCTT 57.753 29.630 0.00 0.00 0.00 2.52
2097 2299 3.384146 TCTCATGCACTGAATCCTCTCTC 59.616 47.826 0.00 0.00 32.14 3.20
2098 2300 3.372897 TCTCATGCACTGAATCCTCTCT 58.627 45.455 0.00 0.00 32.14 3.10
2245 2447 4.835284 TTTGGTCATGTGATGGCTACTA 57.165 40.909 0.00 0.00 34.67 1.82
2418 2691 3.613193 GCTAATTGGGTTTGGTTTCCGAC 60.613 47.826 0.00 0.00 0.00 4.79
2436 2709 1.303561 CACTGGGCCAGCAAGCTAA 60.304 57.895 33.04 0.00 34.37 3.09
2528 2813 0.682209 ACTGGCGACCGTACCTATGT 60.682 55.000 0.00 0.00 0.00 2.29
2642 2953 4.680237 CGTCAGGCAGCGGGTTCA 62.680 66.667 0.00 0.00 0.00 3.18
2655 2966 5.394224 TTGTAGTGGAATGTGATACGTCA 57.606 39.130 0.00 0.00 0.00 4.35
2673 2984 3.745799 TGATTTCGCCCTTGACTTTGTA 58.254 40.909 0.00 0.00 0.00 2.41
2965 3276 1.136891 CTGTCACATATCTCGGGCACA 59.863 52.381 0.00 0.00 0.00 4.57
3073 3385 3.244665 ACACAGCACCTCATGATCAGAAA 60.245 43.478 0.09 0.00 0.00 2.52
3080 3392 1.937191 TCCTACACAGCACCTCATGA 58.063 50.000 0.00 0.00 0.00 3.07
3083 3395 0.904649 CCATCCTACACAGCACCTCA 59.095 55.000 0.00 0.00 0.00 3.86
3161 3474 2.294791 ACACGATTTGCATTTTCCGGAA 59.705 40.909 14.35 14.35 0.00 4.30
3340 3655 7.345691 TCCTGCATTCTTGGATTAAGTGAATA 58.654 34.615 0.00 0.00 37.65 1.75
3359 3675 6.514012 TCCTAGATTTTCCATATTCCTGCA 57.486 37.500 0.00 0.00 0.00 4.41
3481 3802 7.747155 TTCCTTTGTTTCCGTGACAAATATA 57.253 32.000 8.15 0.00 43.64 0.86
3658 3983 7.038302 TGAGGATGACCATTATGGAGGTATAAC 60.038 40.741 19.23 3.88 40.96 1.89
3661 3986 5.415065 TGAGGATGACCATTATGGAGGTAT 58.585 41.667 19.23 6.17 40.96 2.73
3671 3996 1.475751 GCCGTGATGAGGATGACCATT 60.476 52.381 0.00 0.00 38.94 3.16
3684 4009 3.206150 GAATACAGTGAATGGCCGTGAT 58.794 45.455 0.00 0.00 0.00 3.06
3810 4176 2.024176 TCATTTACGCCTGAGCCTTC 57.976 50.000 0.00 0.00 34.57 3.46
3816 4182 2.617021 GGAACCCTTCATTTACGCCTGA 60.617 50.000 0.00 0.00 0.00 3.86
4022 4414 9.933723 CCAATTCCTTCTCAAAATAAAAGTCAT 57.066 29.630 0.00 0.00 0.00 3.06
4116 4509 2.086610 AACTTCCCAACACCATTGCT 57.913 45.000 0.00 0.00 0.00 3.91
4140 4533 0.542333 TCGGTCTCCCACACACAAAA 59.458 50.000 0.00 0.00 0.00 2.44
4144 4537 2.936498 CAAATATCGGTCTCCCACACAC 59.064 50.000 0.00 0.00 0.00 3.82
4263 4660 9.477484 GGAGTATATTTTCACGTCATACAGATT 57.523 33.333 0.00 0.00 0.00 2.40
4264 4661 8.638873 TGGAGTATATTTTCACGTCATACAGAT 58.361 33.333 0.00 0.00 0.00 2.90
4265 4662 8.002984 TGGAGTATATTTTCACGTCATACAGA 57.997 34.615 0.00 0.00 0.00 3.41
4266 4663 8.703336 CATGGAGTATATTTTCACGTCATACAG 58.297 37.037 0.00 0.00 0.00 2.74
4267 4664 8.417884 TCATGGAGTATATTTTCACGTCATACA 58.582 33.333 0.00 0.00 0.00 2.29
4268 4665 8.812147 TCATGGAGTATATTTTCACGTCATAC 57.188 34.615 0.00 0.00 0.00 2.39
4269 4666 9.423061 CATCATGGAGTATATTTTCACGTCATA 57.577 33.333 0.00 0.00 0.00 2.15
4270 4667 8.150296 TCATCATGGAGTATATTTTCACGTCAT 58.850 33.333 0.00 0.00 0.00 3.06
4271 4668 7.496747 TCATCATGGAGTATATTTTCACGTCA 58.503 34.615 0.00 0.00 0.00 4.35
4272 4669 7.946655 TCATCATGGAGTATATTTTCACGTC 57.053 36.000 0.00 0.00 0.00 4.34
4274 4671 8.446273 GGATTCATCATGGAGTATATTTTCACG 58.554 37.037 0.00 0.00 0.00 4.35
4275 4672 9.288576 TGGATTCATCATGGAGTATATTTTCAC 57.711 33.333 0.00 0.00 0.00 3.18
4276 4673 9.865152 TTGGATTCATCATGGAGTATATTTTCA 57.135 29.630 0.00 0.00 0.00 2.69
4280 4677 8.396388 ACCATTGGATTCATCATGGAGTATATT 58.604 33.333 10.37 0.00 33.66 1.28
4281 4678 7.936497 ACCATTGGATTCATCATGGAGTATAT 58.064 34.615 10.37 0.00 33.66 0.86
4282 4679 7.333779 ACCATTGGATTCATCATGGAGTATA 57.666 36.000 10.37 0.00 33.66 1.47
4283 4680 6.210172 ACCATTGGATTCATCATGGAGTAT 57.790 37.500 10.37 0.00 33.66 2.12
4284 4681 5.651612 ACCATTGGATTCATCATGGAGTA 57.348 39.130 10.37 0.00 33.66 2.59
4285 4682 4.531357 ACCATTGGATTCATCATGGAGT 57.469 40.909 10.37 0.00 33.66 3.85
4286 4683 6.717997 TCAATACCATTGGATTCATCATGGAG 59.282 38.462 10.37 0.17 33.66 3.86
4287 4684 6.612741 TCAATACCATTGGATTCATCATGGA 58.387 36.000 10.37 0.00 33.66 3.41
4288 4685 6.904463 TCAATACCATTGGATTCATCATGG 57.096 37.500 10.37 3.45 35.45 3.66
4289 4686 9.203421 CAAATCAATACCATTGGATTCATCATG 57.797 33.333 10.37 0.00 0.00 3.07
4290 4687 8.372459 CCAAATCAATACCATTGGATTCATCAT 58.628 33.333 10.37 0.00 44.01 2.45
4291 4688 7.345132 ACCAAATCAATACCATTGGATTCATCA 59.655 33.333 10.37 0.00 44.01 3.07
4292 4689 7.654520 CACCAAATCAATACCATTGGATTCATC 59.345 37.037 10.37 0.00 44.01 2.92
4293 4690 7.419287 CCACCAAATCAATACCATTGGATTCAT 60.419 37.037 10.37 0.00 44.01 2.57
4294 4691 6.127111 CCACCAAATCAATACCATTGGATTCA 60.127 38.462 10.37 0.00 44.01 2.57
4295 4692 6.127083 ACCACCAAATCAATACCATTGGATTC 60.127 38.462 10.37 0.00 44.01 2.52
4296 4693 5.725822 ACCACCAAATCAATACCATTGGATT 59.274 36.000 10.37 2.30 44.01 3.01
4297 4694 5.129155 CACCACCAAATCAATACCATTGGAT 59.871 40.000 10.37 0.00 44.01 3.41
4361 4758 7.992295 TCCCCTTATTAGGTTTTGTCTAAAGT 58.008 34.615 0.00 0.00 40.19 2.66
4362 4759 8.107729 ACTCCCCTTATTAGGTTTTGTCTAAAG 58.892 37.037 0.00 0.00 40.19 1.85
4363 4760 7.992295 ACTCCCCTTATTAGGTTTTGTCTAAA 58.008 34.615 0.00 0.00 40.19 1.85
4365 4762 8.683776 TTACTCCCCTTATTAGGTTTTGTCTA 57.316 34.615 0.00 0.00 40.19 2.59
4366 4763 7.578458 TTACTCCCCTTATTAGGTTTTGTCT 57.422 36.000 0.00 0.00 40.19 3.41
4390 4787 0.251033 GGTACTCCCTGCGGGTTTTT 60.251 55.000 11.58 0.00 44.74 1.94
4391 4788 1.377612 GGTACTCCCTGCGGGTTTT 59.622 57.895 11.58 0.00 44.74 2.43
4392 4789 1.420532 TTGGTACTCCCTGCGGGTTT 61.421 55.000 11.58 3.29 44.74 3.27
4393 4790 1.844289 TTGGTACTCCCTGCGGGTT 60.844 57.895 11.58 3.63 44.74 4.11
4394 4791 2.203877 TTGGTACTCCCTGCGGGT 60.204 61.111 11.58 0.00 44.74 5.28
4395 4792 2.267961 GTTGGTACTCCCTGCGGG 59.732 66.667 3.88 3.88 46.11 6.13
4396 4793 1.079127 CAGTTGGTACTCCCTGCGG 60.079 63.158 0.00 0.00 30.26 5.69
4397 4794 1.741770 GCAGTTGGTACTCCCTGCG 60.742 63.158 12.87 0.00 38.51 5.18
4398 4795 0.250727 TTGCAGTTGGTACTCCCTGC 60.251 55.000 18.16 18.16 44.02 4.85
4399 4796 1.347707 TCTTGCAGTTGGTACTCCCTG 59.652 52.381 0.00 0.00 30.26 4.45
4400 4797 1.729586 TCTTGCAGTTGGTACTCCCT 58.270 50.000 0.00 0.00 30.26 4.20
4401 4798 2.789409 ATCTTGCAGTTGGTACTCCC 57.211 50.000 0.00 0.00 30.26 4.30
4402 4799 4.737855 TCTATCTTGCAGTTGGTACTCC 57.262 45.455 0.00 0.00 30.26 3.85
4403 4800 5.479306 TGTTCTATCTTGCAGTTGGTACTC 58.521 41.667 0.00 0.00 30.26 2.59
4404 4801 5.483685 TGTTCTATCTTGCAGTTGGTACT 57.516 39.130 0.00 0.00 34.00 2.73
4405 4802 5.005779 CGATGTTCTATCTTGCAGTTGGTAC 59.994 44.000 0.00 0.00 0.00 3.34
4406 4803 5.109210 CGATGTTCTATCTTGCAGTTGGTA 58.891 41.667 0.00 0.00 0.00 3.25
4407 4804 3.935203 CGATGTTCTATCTTGCAGTTGGT 59.065 43.478 0.00 0.00 0.00 3.67
4408 4805 3.935203 ACGATGTTCTATCTTGCAGTTGG 59.065 43.478 0.00 0.00 0.00 3.77
4409 4806 4.867047 AGACGATGTTCTATCTTGCAGTTG 59.133 41.667 0.00 0.00 0.00 3.16
4410 4807 5.078411 AGACGATGTTCTATCTTGCAGTT 57.922 39.130 0.00 0.00 0.00 3.16
4438 4835 9.702253 TGCTAATATATGACCAAAACCCTTAAA 57.298 29.630 0.00 0.00 0.00 1.52
4439 4836 9.127277 GTGCTAATATATGACCAAAACCCTTAA 57.873 33.333 0.00 0.00 0.00 1.85
4440 4837 7.722285 GGTGCTAATATATGACCAAAACCCTTA 59.278 37.037 0.00 0.00 0.00 2.69
4441 4838 6.549736 GGTGCTAATATATGACCAAAACCCTT 59.450 38.462 0.00 0.00 0.00 3.95
4442 4839 6.068670 GGTGCTAATATATGACCAAAACCCT 58.931 40.000 0.00 0.00 0.00 4.34
4444 4841 6.952773 TGGTGCTAATATATGACCAAAACC 57.047 37.500 0.00 0.00 33.72 3.27
4448 4845 9.283768 CTGTTTATGGTGCTAATATATGACCAA 57.716 33.333 9.17 0.54 40.05 3.67
4449 4846 8.655901 TCTGTTTATGGTGCTAATATATGACCA 58.344 33.333 0.00 0.00 40.89 4.02
4450 4847 9.155975 CTCTGTTTATGGTGCTAATATATGACC 57.844 37.037 0.00 0.00 0.00 4.02
4454 5289 6.818644 CGCCTCTGTTTATGGTGCTAATATAT 59.181 38.462 0.00 0.00 0.00 0.86
4457 5292 4.377021 CGCCTCTGTTTATGGTGCTAATA 58.623 43.478 0.00 0.00 0.00 0.98
4467 5302 2.189521 CCCGGCGCCTCTGTTTAT 59.810 61.111 26.68 0.00 0.00 1.40
4480 5315 3.984186 TTCCCTCTCTCAGCCCCGG 62.984 68.421 0.00 0.00 0.00 5.73
4481 5316 1.764054 ATTCCCTCTCTCAGCCCCG 60.764 63.158 0.00 0.00 0.00 5.73
4483 5318 0.179936 CACATTCCCTCTCTCAGCCC 59.820 60.000 0.00 0.00 0.00 5.19
4484 5319 1.198713 TCACATTCCCTCTCTCAGCC 58.801 55.000 0.00 0.00 0.00 4.85
4485 5320 2.170187 ACATCACATTCCCTCTCTCAGC 59.830 50.000 0.00 0.00 0.00 4.26
4486 5321 5.355596 GTTACATCACATTCCCTCTCTCAG 58.644 45.833 0.00 0.00 0.00 3.35
4487 5322 4.142160 CGTTACATCACATTCCCTCTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
4488 5323 4.098044 TCGTTACATCACATTCCCTCTCTC 59.902 45.833 0.00 0.00 0.00 3.20
4489 5324 4.023980 TCGTTACATCACATTCCCTCTCT 58.976 43.478 0.00 0.00 0.00 3.10
4490 5325 4.386867 TCGTTACATCACATTCCCTCTC 57.613 45.455 0.00 0.00 0.00 3.20
4491 5326 4.819105 TTCGTTACATCACATTCCCTCT 57.181 40.909 0.00 0.00 0.00 3.69
4492 5327 5.873179 TTTTCGTTACATCACATTCCCTC 57.127 39.130 0.00 0.00 0.00 4.30
4495 5330 6.435428 ACAGTTTTTCGTTACATCACATTCC 58.565 36.000 0.00 0.00 0.00 3.01
4496 5331 7.744715 CCTACAGTTTTTCGTTACATCACATTC 59.255 37.037 0.00 0.00 0.00 2.67
4497 5332 7.581476 CCTACAGTTTTTCGTTACATCACATT 58.419 34.615 0.00 0.00 0.00 2.71
4498 5333 6.348213 GCCTACAGTTTTTCGTTACATCACAT 60.348 38.462 0.00 0.00 0.00 3.21
4499 5334 5.049954 GCCTACAGTTTTTCGTTACATCACA 60.050 40.000 0.00 0.00 0.00 3.58
4500 5335 5.049954 TGCCTACAGTTTTTCGTTACATCAC 60.050 40.000 0.00 0.00 0.00 3.06
4502 5337 5.379827 GTGCCTACAGTTTTTCGTTACATC 58.620 41.667 0.00 0.00 0.00 3.06
4503 5338 4.084223 CGTGCCTACAGTTTTTCGTTACAT 60.084 41.667 0.00 0.00 0.00 2.29
4504 5339 3.245754 CGTGCCTACAGTTTTTCGTTACA 59.754 43.478 0.00 0.00 0.00 2.41
4505 5340 3.245990 ACGTGCCTACAGTTTTTCGTTAC 59.754 43.478 0.00 0.00 0.00 2.50
4506 5341 3.456280 ACGTGCCTACAGTTTTTCGTTA 58.544 40.909 0.00 0.00 0.00 3.18
4507 5342 2.282407 ACGTGCCTACAGTTTTTCGTT 58.718 42.857 0.00 0.00 0.00 3.85
4508 5343 1.944032 ACGTGCCTACAGTTTTTCGT 58.056 45.000 0.00 0.00 0.00 3.85
4509 5344 3.328237 AAACGTGCCTACAGTTTTTCG 57.672 42.857 0.00 0.00 33.20 3.46
4511 5346 5.823209 AGTAAAACGTGCCTACAGTTTTT 57.177 34.783 10.17 0.00 40.46 1.94
4512 5347 6.512253 GCTTAGTAAAACGTGCCTACAGTTTT 60.512 38.462 9.86 9.86 41.56 2.43
4513 5348 5.049886 GCTTAGTAAAACGTGCCTACAGTTT 60.050 40.000 0.00 0.00 36.12 2.66
4515 5350 3.992427 GCTTAGTAAAACGTGCCTACAGT 59.008 43.478 0.00 0.00 0.00 3.55
4516 5351 3.370061 GGCTTAGTAAAACGTGCCTACAG 59.630 47.826 2.28 0.00 37.58 2.74
4517 5352 3.244146 TGGCTTAGTAAAACGTGCCTACA 60.244 43.478 10.20 0.00 40.82 2.74
4518 5353 3.328505 TGGCTTAGTAAAACGTGCCTAC 58.671 45.455 10.20 2.96 40.82 3.18
4519 5354 3.681593 TGGCTTAGTAAAACGTGCCTA 57.318 42.857 10.20 0.00 40.82 3.93
4520 5355 2.554370 TGGCTTAGTAAAACGTGCCT 57.446 45.000 10.20 0.00 40.82 4.75
4521 5356 2.667448 GCTTGGCTTAGTAAAACGTGCC 60.667 50.000 2.52 2.52 40.62 5.01
4522 5357 2.031508 TGCTTGGCTTAGTAAAACGTGC 60.032 45.455 0.00 0.00 0.00 5.34
4523 5358 3.002862 TGTGCTTGGCTTAGTAAAACGTG 59.997 43.478 0.00 0.00 0.00 4.49
4524 5359 3.207778 TGTGCTTGGCTTAGTAAAACGT 58.792 40.909 0.00 0.00 0.00 3.99
4526 5361 5.768317 TCAATGTGCTTGGCTTAGTAAAAC 58.232 37.500 0.00 0.00 35.43 2.43
4527 5362 6.588719 ATCAATGTGCTTGGCTTAGTAAAA 57.411 33.333 0.00 0.00 35.43 1.52
4528 5363 6.588719 AATCAATGTGCTTGGCTTAGTAAA 57.411 33.333 0.00 0.00 35.43 2.01
4529 5364 6.389091 CAAATCAATGTGCTTGGCTTAGTAA 58.611 36.000 0.00 0.00 35.43 2.24
4530 5365 5.105797 CCAAATCAATGTGCTTGGCTTAGTA 60.106 40.000 0.00 0.00 35.43 1.82
4531 5366 4.322198 CCAAATCAATGTGCTTGGCTTAGT 60.322 41.667 0.00 0.00 35.43 2.24
4532 5367 4.178540 CCAAATCAATGTGCTTGGCTTAG 58.821 43.478 0.00 0.00 35.43 2.18
4533 5368 3.055963 CCCAAATCAATGTGCTTGGCTTA 60.056 43.478 5.61 0.00 37.57 3.09
4538 5373 4.634199 AGTTTCCCAAATCAATGTGCTTG 58.366 39.130 0.00 0.00 36.09 4.01
4539 5374 4.961438 AGTTTCCCAAATCAATGTGCTT 57.039 36.364 0.00 0.00 0.00 3.91
4540 5375 4.101430 ACAAGTTTCCCAAATCAATGTGCT 59.899 37.500 0.00 0.00 0.00 4.40
4541 5376 4.379652 ACAAGTTTCCCAAATCAATGTGC 58.620 39.130 0.00 0.00 0.00 4.57
4542 5377 7.209475 AGTAACAAGTTTCCCAAATCAATGTG 58.791 34.615 0.00 0.00 0.00 3.21
4544 5379 7.542130 GCTAGTAACAAGTTTCCCAAATCAATG 59.458 37.037 0.00 0.00 0.00 2.82
4545 5380 7.574967 CGCTAGTAACAAGTTTCCCAAATCAAT 60.575 37.037 0.00 0.00 0.00 2.57
4547 5382 5.180492 CGCTAGTAACAAGTTTCCCAAATCA 59.820 40.000 0.00 0.00 0.00 2.57
4548 5383 5.391629 CCGCTAGTAACAAGTTTCCCAAATC 60.392 44.000 0.00 0.00 0.00 2.17
4549 5384 4.457949 CCGCTAGTAACAAGTTTCCCAAAT 59.542 41.667 0.00 0.00 0.00 2.32
4550 5385 3.816523 CCGCTAGTAACAAGTTTCCCAAA 59.183 43.478 0.00 0.00 0.00 3.28
4553 5388 3.259902 CTCCGCTAGTAACAAGTTTCCC 58.740 50.000 0.00 0.00 0.00 3.97
4554 5389 3.922910 ACTCCGCTAGTAACAAGTTTCC 58.077 45.455 0.00 0.00 36.36 3.13
4555 5390 3.607209 CGACTCCGCTAGTAACAAGTTTC 59.393 47.826 0.00 0.00 39.07 2.78
4556 5391 3.572584 CGACTCCGCTAGTAACAAGTTT 58.427 45.455 0.00 0.00 39.07 2.66
4557 5392 3.213249 CGACTCCGCTAGTAACAAGTT 57.787 47.619 0.00 0.00 39.07 2.66
4558 5393 2.915738 CGACTCCGCTAGTAACAAGT 57.084 50.000 0.00 0.00 39.07 3.16
4570 5405 2.050895 CATCCGCTAGCGACTCCG 60.051 66.667 37.39 20.42 42.83 4.63
4571 5406 2.355244 GCATCCGCTAGCGACTCC 60.355 66.667 37.39 18.64 42.83 3.85
4572 5407 1.006314 GATGCATCCGCTAGCGACTC 61.006 60.000 37.39 21.88 42.83 3.36
4573 5408 1.006805 GATGCATCCGCTAGCGACT 60.007 57.895 37.39 20.98 42.83 4.18
4574 5409 0.668706 ATGATGCATCCGCTAGCGAC 60.669 55.000 37.39 22.56 42.83 5.19
4576 5411 0.165295 CAATGATGCATCCGCTAGCG 59.835 55.000 29.93 29.93 39.64 4.26
4577 5412 1.516161 TCAATGATGCATCCGCTAGC 58.484 50.000 23.67 4.06 39.64 3.42
4578 5413 4.752146 TCTATCAATGATGCATCCGCTAG 58.248 43.478 23.67 15.62 39.64 3.42
4579 5414 4.382362 CCTCTATCAATGATGCATCCGCTA 60.382 45.833 23.67 5.53 39.64 4.26
4580 5415 3.597255 CTCTATCAATGATGCATCCGCT 58.403 45.455 23.67 5.99 39.64 5.52
4581 5416 2.676839 CCTCTATCAATGATGCATCCGC 59.323 50.000 23.67 0.06 39.24 5.54
4582 5417 3.683340 CACCTCTATCAATGATGCATCCG 59.317 47.826 23.67 12.27 0.00 4.18
4583 5418 3.439476 GCACCTCTATCAATGATGCATCC 59.561 47.826 23.67 6.71 0.00 3.51
4584 5419 3.439476 GGCACCTCTATCAATGATGCATC 59.561 47.826 20.14 20.14 33.24 3.91
4585 5420 3.181437 TGGCACCTCTATCAATGATGCAT 60.181 43.478 5.91 0.00 33.24 3.96
4591 5426 2.928334 AGCTTGGCACCTCTATCAATG 58.072 47.619 0.00 0.00 0.00 2.82
4606 5441 3.197265 CAAGTTTCCCAAACCAAGCTTG 58.803 45.455 19.93 19.93 42.34 4.01
4607 5442 2.837591 ACAAGTTTCCCAAACCAAGCTT 59.162 40.909 0.00 0.00 42.34 3.74
4611 5446 5.638234 CGTTAAAACAAGTTTCCCAAACCAA 59.362 36.000 0.00 0.00 42.34 3.67
4612 5447 5.169295 CGTTAAAACAAGTTTCCCAAACCA 58.831 37.500 0.00 0.00 42.34 3.67
4613 5448 4.567558 CCGTTAAAACAAGTTTCCCAAACC 59.432 41.667 0.00 0.00 42.34 3.27
4614 5449 5.170021 ACCGTTAAAACAAGTTTCCCAAAC 58.830 37.500 0.00 2.11 41.69 2.93
4616 5451 6.712179 ATACCGTTAAAACAAGTTTCCCAA 57.288 33.333 0.00 0.00 31.45 4.12
4618 5453 8.134261 TGTTAATACCGTTAAAACAAGTTTCCC 58.866 33.333 0.00 0.00 31.45 3.97
4619 5454 9.172820 CTGTTAATACCGTTAAAACAAGTTTCC 57.827 33.333 0.00 0.00 30.30 3.13
4633 5468 9.631452 GTCTACTTTCTTTACTGTTAATACCGT 57.369 33.333 0.00 0.00 0.00 4.83
4634 5469 9.630098 TGTCTACTTTCTTTACTGTTAATACCG 57.370 33.333 0.00 0.00 0.00 4.02
4642 5477 9.654663 GATGGTATTGTCTACTTTCTTTACTGT 57.345 33.333 0.00 0.00 0.00 3.55
4643 5478 9.877178 AGATGGTATTGTCTACTTTCTTTACTG 57.123 33.333 0.00 0.00 0.00 2.74
4644 5479 9.877178 CAGATGGTATTGTCTACTTTCTTTACT 57.123 33.333 0.00 0.00 0.00 2.24
4645 5480 9.871238 TCAGATGGTATTGTCTACTTTCTTTAC 57.129 33.333 0.00 0.00 0.00 2.01
4647 5482 9.965902 ATTCAGATGGTATTGTCTACTTTCTTT 57.034 29.630 0.00 0.00 0.00 2.52
4648 5483 9.388506 CATTCAGATGGTATTGTCTACTTTCTT 57.611 33.333 0.00 0.00 0.00 2.52
4649 5484 8.543774 ACATTCAGATGGTATTGTCTACTTTCT 58.456 33.333 0.00 0.00 37.60 2.52
4650 5485 8.607459 CACATTCAGATGGTATTGTCTACTTTC 58.393 37.037 0.00 0.00 37.60 2.62
4651 5486 7.066284 GCACATTCAGATGGTATTGTCTACTTT 59.934 37.037 0.00 0.00 37.60 2.66
4652 5487 6.540189 GCACATTCAGATGGTATTGTCTACTT 59.460 38.462 0.00 0.00 37.60 2.24
4653 5488 6.051717 GCACATTCAGATGGTATTGTCTACT 58.948 40.000 0.00 0.00 37.60 2.57
4654 5489 5.817296 TGCACATTCAGATGGTATTGTCTAC 59.183 40.000 0.00 0.00 37.60 2.59
4655 5490 5.988287 TGCACATTCAGATGGTATTGTCTA 58.012 37.500 0.00 0.00 37.60 2.59
4656 5491 4.847198 TGCACATTCAGATGGTATTGTCT 58.153 39.130 0.00 0.00 37.60 3.41
4657 5492 5.066893 ACATGCACATTCAGATGGTATTGTC 59.933 40.000 0.00 0.00 37.60 3.18
4658 5493 4.951715 ACATGCACATTCAGATGGTATTGT 59.048 37.500 0.00 0.00 37.60 2.71
4659 5494 5.278604 CACATGCACATTCAGATGGTATTG 58.721 41.667 0.00 0.00 37.60 1.90
4660 5495 4.340097 CCACATGCACATTCAGATGGTATT 59.660 41.667 0.00 0.00 37.60 1.89
4661 5496 3.887110 CCACATGCACATTCAGATGGTAT 59.113 43.478 0.00 0.00 37.60 2.73
4662 5497 3.054508 TCCACATGCACATTCAGATGGTA 60.055 43.478 0.00 0.00 37.60 3.25
4663 5498 2.097036 CCACATGCACATTCAGATGGT 58.903 47.619 0.00 0.00 37.60 3.55
4664 5499 2.371306 TCCACATGCACATTCAGATGG 58.629 47.619 0.00 0.00 37.60 3.51
4665 5500 4.338400 AGAATCCACATGCACATTCAGATG 59.662 41.667 11.61 0.00 39.25 2.90
4666 5501 4.533815 AGAATCCACATGCACATTCAGAT 58.466 39.130 11.61 0.00 0.00 2.90
4667 5502 3.959293 AGAATCCACATGCACATTCAGA 58.041 40.909 11.61 0.00 0.00 3.27
4668 5503 5.823209 TTAGAATCCACATGCACATTCAG 57.177 39.130 11.61 0.00 0.00 3.02
4669 5504 5.711506 ACTTTAGAATCCACATGCACATTCA 59.288 36.000 11.61 0.00 0.00 2.57
4670 5505 6.199937 ACTTTAGAATCCACATGCACATTC 57.800 37.500 0.00 0.00 0.00 2.67
4671 5506 7.701539 TTACTTTAGAATCCACATGCACATT 57.298 32.000 0.00 0.00 0.00 2.71
4672 5507 7.701539 TTTACTTTAGAATCCACATGCACAT 57.298 32.000 0.00 0.00 0.00 3.21
4673 5508 7.517614 TTTTACTTTAGAATCCACATGCACA 57.482 32.000 0.00 0.00 0.00 4.57
4674 5509 7.009540 GCATTTTACTTTAGAATCCACATGCAC 59.990 37.037 0.00 0.00 33.80 4.57
4675 5510 7.035004 GCATTTTACTTTAGAATCCACATGCA 58.965 34.615 0.00 0.00 33.80 3.96
4676 5511 7.260603 AGCATTTTACTTTAGAATCCACATGC 58.739 34.615 0.00 0.00 33.80 4.06
4677 5512 8.680903 AGAGCATTTTACTTTAGAATCCACATG 58.319 33.333 0.00 0.00 0.00 3.21
4678 5513 8.814038 AGAGCATTTTACTTTAGAATCCACAT 57.186 30.769 0.00 0.00 0.00 3.21
4679 5514 8.635765 AAGAGCATTTTACTTTAGAATCCACA 57.364 30.769 0.00 0.00 0.00 4.17
4689 5524 9.841295 TCCCGTAATATAAGAGCATTTTACTTT 57.159 29.630 0.00 0.00 0.00 2.66
4690 5525 9.269453 GTCCCGTAATATAAGAGCATTTTACTT 57.731 33.333 0.00 0.00 0.00 2.24
4691 5526 8.426489 TGTCCCGTAATATAAGAGCATTTTACT 58.574 33.333 0.00 0.00 0.00 2.24
4692 5527 8.597662 TGTCCCGTAATATAAGAGCATTTTAC 57.402 34.615 0.00 0.00 0.00 2.01
4693 5528 8.644216 TCTGTCCCGTAATATAAGAGCATTTTA 58.356 33.333 0.00 0.00 0.00 1.52
4700 5535 5.322754 TCCCTCTGTCCCGTAATATAAGAG 58.677 45.833 0.00 0.00 0.00 2.85
4710 5545 2.177233 ACATATACTCCCTCTGTCCCGT 59.823 50.000 0.00 0.00 0.00 5.28
4711 5546 2.877866 ACATATACTCCCTCTGTCCCG 58.122 52.381 0.00 0.00 0.00 5.14
4712 5547 5.477637 GTCTAACATATACTCCCTCTGTCCC 59.522 48.000 0.00 0.00 0.00 4.46
4713 5548 5.477637 GGTCTAACATATACTCCCTCTGTCC 59.522 48.000 0.00 0.00 0.00 4.02
4715 5550 5.395611 GGGTCTAACATATACTCCCTCTGT 58.604 45.833 0.00 0.00 0.00 3.41
4716 5551 4.459685 CGGGTCTAACATATACTCCCTCTG 59.540 50.000 0.00 0.00 0.00 3.35
4717 5552 4.353191 TCGGGTCTAACATATACTCCCTCT 59.647 45.833 0.00 0.00 0.00 3.69
4718 5553 4.660168 TCGGGTCTAACATATACTCCCTC 58.340 47.826 0.00 0.00 0.00 4.30
4721 5556 6.585695 TCAATCGGGTCTAACATATACTCC 57.414 41.667 0.00 0.00 0.00 3.85
4727 5562 7.876068 GGTTCAATATCAATCGGGTCTAACATA 59.124 37.037 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.