Multiple sequence alignment - TraesCS3D01G125700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G125700 chr3D 100.000 3887 0 0 1 3887 84106404 84110290 0.000000e+00 7179.0
1 TraesCS3D01G125700 chr3D 94.382 3311 144 20 591 3887 84115742 84119024 0.000000e+00 5046.0
2 TraesCS3D01G125700 chr3D 93.811 307 17 2 223 528 76233053 76233358 9.840000e-126 460.0
3 TraesCS3D01G125700 chr3D 87.310 197 22 3 39 234 418772601 418772407 5.050000e-54 222.0
4 TraesCS3D01G125700 chr3D 80.224 268 43 5 927 1190 84494401 84494662 3.960000e-45 193.0
5 TraesCS3D01G125700 chr3B 94.852 3322 131 14 576 3887 132524093 132520802 0.000000e+00 5151.0
6 TraesCS3D01G125700 chr3A 95.248 2525 99 8 846 3365 100429783 100432291 0.000000e+00 3978.0
7 TraesCS3D01G125700 chr3A 94.022 2593 108 12 1295 3886 100415324 100417870 0.000000e+00 3886.0
8 TraesCS3D01G125700 chr3A 89.729 701 54 7 606 1297 100408614 100409305 0.000000e+00 880.0
9 TraesCS3D01G125700 chr3A 90.126 476 28 5 3420 3887 100432291 100432755 5.560000e-168 601.0
10 TraesCS3D01G125700 chr3A 83.333 84 12 2 3775 3857 597181169 597181251 4.160000e-10 76.8
11 TraesCS3D01G125700 chr7D 96.610 295 9 1 229 522 40665627 40665333 4.510000e-134 488.0
12 TraesCS3D01G125700 chr7D 95.270 296 12 2 229 523 619514134 619514428 5.880000e-128 468.0
13 TraesCS3D01G125700 chr2D 97.213 287 7 1 231 516 550637230 550636944 5.840000e-133 484.0
14 TraesCS3D01G125700 chr2D 96.864 287 8 1 231 516 628164190 628163904 2.720000e-131 479.0
15 TraesCS3D01G125700 chr2D 86.224 196 25 2 38 232 472024497 472024691 1.090000e-50 211.0
16 TraesCS3D01G125700 chr2D 85.279 197 23 6 38 232 248382379 248382187 8.520000e-47 198.0
17 TraesCS3D01G125700 chr4D 96.575 292 9 1 226 516 509132932 509132641 2.100000e-132 483.0
18 TraesCS3D01G125700 chr4D 95.890 292 11 1 228 518 165707557 165707266 4.550000e-129 472.0
19 TraesCS3D01G125700 chr4D 95.455 44 2 0 3778 3821 75264076 75264119 1.940000e-08 71.3
20 TraesCS3D01G125700 chr1D 95.318 299 11 3 229 524 328578401 328578103 4.550000e-129 472.0
21 TraesCS3D01G125700 chr1D 83.854 192 23 6 38 228 233889805 233889989 3.990000e-40 176.0
22 TraesCS3D01G125700 chr7B 95.286 297 13 1 221 516 14010248 14010544 1.630000e-128 470.0
23 TraesCS3D01G125700 chr7B 84.524 168 25 1 38 205 480230404 480230238 8.640000e-37 165.0
24 TraesCS3D01G125700 chr4A 86.316 190 25 1 44 233 486118736 486118548 5.090000e-49 206.0
25 TraesCS3D01G125700 chr4A 92.391 92 7 0 3772 3863 697388798 697388889 8.760000e-27 132.0
26 TraesCS3D01G125700 chr4B 84.783 184 26 2 46 229 492201973 492202154 2.390000e-42 183.0
27 TraesCS3D01G125700 chr5B 83.854 192 30 1 38 229 512951740 512951930 8.580000e-42 182.0
28 TraesCS3D01G125700 chr5B 97.222 36 1 0 3831 3866 26938157 26938122 1.170000e-05 62.1
29 TraesCS3D01G125700 chr2B 83.590 195 23 7 38 231 153704410 153704224 1.440000e-39 174.0
30 TraesCS3D01G125700 chr2B 91.954 87 6 1 3781 3866 175632114 175632200 1.900000e-23 121.0
31 TraesCS3D01G125700 chr2A 82.741 197 29 4 38 232 288120033 288119840 1.860000e-38 171.0
32 TraesCS3D01G125700 chr2A 91.011 89 7 1 3779 3866 127200301 127200389 6.820000e-23 119.0
33 TraesCS3D01G125700 chr1B 88.636 88 10 0 3779 3866 392829972 392830059 1.480000e-19 108.0
34 TraesCS3D01G125700 chr1A 82.955 88 13 2 3778 3863 372553119 372553206 1.160000e-10 78.7
35 TraesCS3D01G125700 chr7A 81.081 74 8 4 3778 3848 430757322 430757392 2.000000e-03 54.7
36 TraesCS3D01G125700 chr6A 100.000 28 0 0 3777 3804 84072300 84072273 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G125700 chr3D 84106404 84110290 3886 False 7179.0 7179 100.000 1 3887 1 chr3D.!!$F2 3886
1 TraesCS3D01G125700 chr3D 84115742 84119024 3282 False 5046.0 5046 94.382 591 3887 1 chr3D.!!$F3 3296
2 TraesCS3D01G125700 chr3B 132520802 132524093 3291 True 5151.0 5151 94.852 576 3887 1 chr3B.!!$R1 3311
3 TraesCS3D01G125700 chr3A 100415324 100417870 2546 False 3886.0 3886 94.022 1295 3886 1 chr3A.!!$F2 2591
4 TraesCS3D01G125700 chr3A 100429783 100432755 2972 False 2289.5 3978 92.687 846 3887 2 chr3A.!!$F4 3041
5 TraesCS3D01G125700 chr3A 100408614 100409305 691 False 880.0 880 89.729 606 1297 1 chr3A.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.0 0.00 0.00 0.00 6.13 F
333 334 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.0 0.00 0.00 0.00 4.70 F
704 705 0.106918 CCGACTCTACTCCTGCTCCT 60.107 60.0 0.00 0.00 0.00 3.69 F
1585 1602 0.108992 TATTGTGTCCTGGACGTCGC 60.109 55.0 21.15 11.84 34.95 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1328 0.034380 AGCAGCATGACAGCCTGAAT 60.034 50.000 0.00 0.00 39.69 2.57 R
1519 1536 0.034767 TCCCAAGCTGCTTCCATCTG 60.035 55.000 12.82 0.41 0.00 2.90 R
2007 2024 1.043816 CGATAGCCTCCTCACCATGT 58.956 55.000 0.00 0.00 0.00 3.21 R
3435 3455 2.164827 GCTGTTGCACCATGATCATCAA 59.835 45.455 4.86 4.33 39.41 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.202479 GCGCGGGCTGAAATGTTC 60.202 61.111 18.33 0.00 35.83 3.18
25 26 2.098298 CGCGGGCTGAAATGTTCG 59.902 61.111 0.00 0.00 0.00 3.95
26 27 2.202479 GCGGGCTGAAATGTTCGC 60.202 61.111 0.00 0.00 36.51 4.70
27 28 2.485122 CGGGCTGAAATGTTCGCC 59.515 61.111 12.45 12.45 43.64 5.54
29 30 3.680156 GGCTGAAATGTTCGCCCA 58.320 55.556 10.70 0.00 40.79 5.36
30 31 1.508088 GGCTGAAATGTTCGCCCAG 59.492 57.895 10.70 0.00 40.79 4.45
31 32 1.153958 GCTGAAATGTTCGCCCAGC 60.154 57.895 0.00 0.00 42.52 4.85
32 33 1.508088 CTGAAATGTTCGCCCAGCC 59.492 57.895 0.00 0.00 0.00 4.85
33 34 1.228398 TGAAATGTTCGCCCAGCCA 60.228 52.632 0.00 0.00 0.00 4.75
34 35 0.825425 TGAAATGTTCGCCCAGCCAA 60.825 50.000 0.00 0.00 0.00 4.52
35 36 0.388520 GAAATGTTCGCCCAGCCAAC 60.389 55.000 0.00 0.00 0.00 3.77
36 37 1.815817 AAATGTTCGCCCAGCCAACC 61.816 55.000 0.00 0.00 0.00 3.77
81 82 2.126110 GCATTTTCGCGGGTTGGG 60.126 61.111 6.13 0.00 0.00 4.12
82 83 2.631580 GCATTTTCGCGGGTTGGGA 61.632 57.895 6.13 0.00 37.84 4.37
83 84 1.944234 GCATTTTCGCGGGTTGGGAT 61.944 55.000 6.13 0.00 39.56 3.85
84 85 0.179140 CATTTTCGCGGGTTGGGATG 60.179 55.000 6.13 0.00 39.56 3.51
85 86 1.319614 ATTTTCGCGGGTTGGGATGG 61.320 55.000 6.13 0.00 39.56 3.51
86 87 3.929334 TTTCGCGGGTTGGGATGGG 62.929 63.158 6.13 0.00 39.56 4.00
88 89 4.418328 CGCGGGTTGGGATGGGAA 62.418 66.667 0.00 0.00 0.00 3.97
89 90 2.278738 GCGGGTTGGGATGGGAAT 59.721 61.111 0.00 0.00 0.00 3.01
90 91 1.381191 GCGGGTTGGGATGGGAATT 60.381 57.895 0.00 0.00 0.00 2.17
91 92 0.106419 GCGGGTTGGGATGGGAATTA 60.106 55.000 0.00 0.00 0.00 1.40
92 93 1.480498 GCGGGTTGGGATGGGAATTAT 60.480 52.381 0.00 0.00 0.00 1.28
93 94 2.238521 CGGGTTGGGATGGGAATTATG 58.761 52.381 0.00 0.00 0.00 1.90
94 95 1.970640 GGGTTGGGATGGGAATTATGC 59.029 52.381 0.00 0.00 0.00 3.14
95 96 1.970640 GGTTGGGATGGGAATTATGCC 59.029 52.381 0.00 0.00 36.65 4.40
96 97 1.613437 GTTGGGATGGGAATTATGCCG 59.387 52.381 0.00 0.00 40.61 5.69
97 98 0.539438 TGGGATGGGAATTATGCCGC 60.539 55.000 0.00 0.00 40.61 6.53
98 99 1.586154 GGGATGGGAATTATGCCGCG 61.586 60.000 0.00 0.00 40.61 6.46
99 100 1.210155 GATGGGAATTATGCCGCGC 59.790 57.895 0.00 0.00 40.61 6.86
100 101 2.200170 GATGGGAATTATGCCGCGCC 62.200 60.000 0.00 0.00 40.61 6.53
101 102 3.670377 GGGAATTATGCCGCGCCC 61.670 66.667 0.00 0.00 0.00 6.13
102 103 3.670377 GGAATTATGCCGCGCCCC 61.670 66.667 0.00 0.00 0.00 5.80
103 104 2.904866 GAATTATGCCGCGCCCCA 60.905 61.111 0.00 0.00 0.00 4.96
104 105 3.194272 GAATTATGCCGCGCCCCAC 62.194 63.158 0.00 0.00 0.00 4.61
105 106 4.497984 ATTATGCCGCGCCCCACA 62.498 61.111 0.00 0.00 0.00 4.17
106 107 4.724501 TTATGCCGCGCCCCACAA 62.725 61.111 0.00 0.00 0.00 3.33
107 108 4.724501 TATGCCGCGCCCCACAAA 62.725 61.111 0.00 0.00 0.00 2.83
111 112 3.291383 CCGCGCCCCACAAAAAGA 61.291 61.111 0.00 0.00 0.00 2.52
112 113 2.725008 CGCGCCCCACAAAAAGAA 59.275 55.556 0.00 0.00 0.00 2.52
113 114 1.288752 CGCGCCCCACAAAAAGAAT 59.711 52.632 0.00 0.00 0.00 2.40
114 115 0.319469 CGCGCCCCACAAAAAGAATT 60.319 50.000 0.00 0.00 0.00 2.17
115 116 1.871822 CGCGCCCCACAAAAAGAATTT 60.872 47.619 0.00 0.00 42.41 1.82
116 117 2.608261 CGCGCCCCACAAAAAGAATTTA 60.608 45.455 0.00 0.00 37.28 1.40
117 118 2.734606 GCGCCCCACAAAAAGAATTTAC 59.265 45.455 0.00 0.00 37.28 2.01
118 119 2.983803 CGCCCCACAAAAAGAATTTACG 59.016 45.455 0.00 0.00 37.28 3.18
119 120 3.551250 CGCCCCACAAAAAGAATTTACGT 60.551 43.478 0.00 0.00 37.28 3.57
120 121 3.738791 GCCCCACAAAAAGAATTTACGTG 59.261 43.478 0.00 0.00 37.28 4.49
121 122 4.738243 GCCCCACAAAAAGAATTTACGTGT 60.738 41.667 0.00 0.00 37.28 4.49
122 123 4.979815 CCCCACAAAAAGAATTTACGTGTC 59.020 41.667 0.00 0.00 37.28 3.67
123 124 5.450688 CCCCACAAAAAGAATTTACGTGTCA 60.451 40.000 0.00 0.00 37.28 3.58
124 125 5.685511 CCCACAAAAAGAATTTACGTGTCAG 59.314 40.000 0.00 0.00 37.28 3.51
125 126 6.459024 CCCACAAAAAGAATTTACGTGTCAGA 60.459 38.462 0.00 0.00 37.28 3.27
126 127 6.413818 CCACAAAAAGAATTTACGTGTCAGAC 59.586 38.462 0.00 0.00 37.28 3.51
127 128 6.138546 CACAAAAAGAATTTACGTGTCAGACG 59.861 38.462 0.00 0.00 46.60 4.18
128 129 4.769215 AAAAGAATTTACGTGTCAGACGC 58.231 39.130 3.80 3.80 45.58 5.19
134 135 2.128128 CGTGTCAGACGCGTTTGC 60.128 61.111 25.33 18.35 45.94 3.68
144 145 2.648454 GCGTTTGCGGGGTTTGAT 59.352 55.556 0.00 0.00 38.78 2.57
145 146 1.443702 GCGTTTGCGGGGTTTGATC 60.444 57.895 0.00 0.00 38.78 2.92
146 147 1.154301 CGTTTGCGGGGTTTGATCG 60.154 57.895 0.00 0.00 0.00 3.69
147 148 1.570347 CGTTTGCGGGGTTTGATCGA 61.570 55.000 0.00 0.00 0.00 3.59
148 149 0.168128 GTTTGCGGGGTTTGATCGAG 59.832 55.000 0.00 0.00 0.00 4.04
149 150 1.582610 TTTGCGGGGTTTGATCGAGC 61.583 55.000 0.00 0.00 0.00 5.03
150 151 2.435938 GCGGGGTTTGATCGAGCA 60.436 61.111 0.00 0.00 0.00 4.26
151 152 2.464459 GCGGGGTTTGATCGAGCAG 61.464 63.158 2.57 0.00 0.00 4.24
152 153 2.464459 CGGGGTTTGATCGAGCAGC 61.464 63.158 2.57 0.84 0.00 5.25
153 154 1.377202 GGGGTTTGATCGAGCAGCA 60.377 57.895 2.57 0.00 0.00 4.41
154 155 0.749454 GGGGTTTGATCGAGCAGCAT 60.749 55.000 2.57 0.00 0.00 3.79
155 156 1.098050 GGGTTTGATCGAGCAGCATT 58.902 50.000 2.57 0.00 0.00 3.56
156 157 1.474077 GGGTTTGATCGAGCAGCATTT 59.526 47.619 2.57 0.00 0.00 2.32
157 158 2.094545 GGGTTTGATCGAGCAGCATTTT 60.095 45.455 2.57 0.00 0.00 1.82
158 159 3.174375 GGTTTGATCGAGCAGCATTTTC 58.826 45.455 2.57 0.00 0.00 2.29
159 160 3.119708 GGTTTGATCGAGCAGCATTTTCT 60.120 43.478 2.57 0.00 0.00 2.52
160 161 3.752412 TTGATCGAGCAGCATTTTCTG 57.248 42.857 2.57 0.00 37.15 3.02
168 169 2.574212 GCATTTTCTGCGCCGACG 60.574 61.111 4.18 0.00 41.97 5.12
179 180 4.637970 GCCGACGCGTATTTTGAC 57.362 55.556 13.97 0.00 0.00 3.18
180 181 1.295645 GCCGACGCGTATTTTGACG 60.296 57.895 13.97 9.82 45.70 4.35
181 182 1.342473 CCGACGCGTATTTTGACGG 59.658 57.895 13.97 15.92 43.13 4.79
182 183 1.346378 CCGACGCGTATTTTGACGGT 61.346 55.000 21.02 0.00 43.13 4.83
183 184 0.435769 CGACGCGTATTTTGACGGTT 59.564 50.000 13.97 0.00 43.13 4.44
184 185 1.648191 CGACGCGTATTTTGACGGTTA 59.352 47.619 13.97 0.00 43.13 2.85
185 186 2.279659 CGACGCGTATTTTGACGGTTAT 59.720 45.455 13.97 0.00 43.13 1.89
186 187 3.241741 CGACGCGTATTTTGACGGTTATT 60.242 43.478 13.97 0.00 43.13 1.40
187 188 4.640956 GACGCGTATTTTGACGGTTATTT 58.359 39.130 13.97 0.00 43.13 1.40
188 189 5.033326 ACGCGTATTTTGACGGTTATTTT 57.967 34.783 11.67 0.00 43.13 1.82
189 190 6.163159 ACGCGTATTTTGACGGTTATTTTA 57.837 33.333 11.67 0.00 43.13 1.52
190 191 6.014898 ACGCGTATTTTGACGGTTATTTTAC 58.985 36.000 11.67 0.00 43.13 2.01
191 192 5.165889 CGCGTATTTTGACGGTTATTTTACG 59.834 40.000 0.00 0.00 43.13 3.18
192 193 5.448796 GCGTATTTTGACGGTTATTTTACGG 59.551 40.000 12.44 0.00 43.13 4.02
193 194 5.958949 CGTATTTTGACGGTTATTTTACGGG 59.041 40.000 0.00 0.00 39.19 5.28
194 195 5.963176 ATTTTGACGGTTATTTTACGGGT 57.037 34.783 0.00 0.00 0.00 5.28
195 196 5.764487 TTTTGACGGTTATTTTACGGGTT 57.236 34.783 0.00 0.00 0.00 4.11
196 197 4.745837 TTGACGGTTATTTTACGGGTTG 57.254 40.909 0.00 0.00 0.00 3.77
197 198 2.483491 TGACGGTTATTTTACGGGTTGC 59.517 45.455 0.00 0.00 0.00 4.17
198 199 1.464219 ACGGTTATTTTACGGGTTGCG 59.536 47.619 0.00 0.00 0.00 4.85
199 200 1.202054 CGGTTATTTTACGGGTTGCGG 60.202 52.381 0.00 0.00 0.00 5.69
200 201 1.467883 GGTTATTTTACGGGTTGCGGC 60.468 52.381 0.00 0.00 0.00 6.53
201 202 1.469703 GTTATTTTACGGGTTGCGGCT 59.530 47.619 0.00 0.00 0.00 5.52
202 203 1.823797 TATTTTACGGGTTGCGGCTT 58.176 45.000 0.00 0.00 0.00 4.35
203 204 0.963225 ATTTTACGGGTTGCGGCTTT 59.037 45.000 0.00 0.00 0.00 3.51
204 205 1.602311 TTTTACGGGTTGCGGCTTTA 58.398 45.000 0.00 0.00 0.00 1.85
205 206 1.823797 TTTACGGGTTGCGGCTTTAT 58.176 45.000 0.00 0.00 0.00 1.40
206 207 2.687700 TTACGGGTTGCGGCTTTATA 57.312 45.000 0.00 0.00 0.00 0.98
207 208 2.914695 TACGGGTTGCGGCTTTATAT 57.085 45.000 0.00 0.00 0.00 0.86
208 209 2.914695 ACGGGTTGCGGCTTTATATA 57.085 45.000 0.00 0.00 0.00 0.86
209 210 3.196939 ACGGGTTGCGGCTTTATATAA 57.803 42.857 0.00 0.00 0.00 0.98
210 211 3.135994 ACGGGTTGCGGCTTTATATAAG 58.864 45.455 0.00 0.00 0.00 1.73
211 212 2.482721 CGGGTTGCGGCTTTATATAAGG 59.517 50.000 0.00 0.32 0.00 2.69
212 213 3.483421 GGGTTGCGGCTTTATATAAGGT 58.517 45.455 0.00 0.00 0.00 3.50
213 214 4.644498 GGGTTGCGGCTTTATATAAGGTA 58.356 43.478 0.00 0.00 0.00 3.08
214 215 5.250982 GGGTTGCGGCTTTATATAAGGTAT 58.749 41.667 0.00 0.00 0.00 2.73
215 216 5.123344 GGGTTGCGGCTTTATATAAGGTATG 59.877 44.000 0.00 0.00 0.00 2.39
216 217 5.391629 GGTTGCGGCTTTATATAAGGTATGC 60.392 44.000 0.00 8.15 0.00 3.14
217 218 5.160607 TGCGGCTTTATATAAGGTATGCT 57.839 39.130 0.00 0.00 0.00 3.79
218 219 6.288941 TGCGGCTTTATATAAGGTATGCTA 57.711 37.500 0.00 0.00 0.00 3.49
219 220 6.338146 TGCGGCTTTATATAAGGTATGCTAG 58.662 40.000 0.00 0.00 0.00 3.42
220 221 6.153851 TGCGGCTTTATATAAGGTATGCTAGA 59.846 38.462 0.00 0.00 0.00 2.43
221 222 6.697892 GCGGCTTTATATAAGGTATGCTAGAG 59.302 42.308 6.48 0.00 0.00 2.43
222 223 7.416438 GCGGCTTTATATAAGGTATGCTAGAGA 60.416 40.741 6.48 0.00 0.00 3.10
223 224 8.634444 CGGCTTTATATAAGGTATGCTAGAGAT 58.366 37.037 6.48 0.00 0.00 2.75
224 225 9.757227 GGCTTTATATAAGGTATGCTAGAGATG 57.243 37.037 6.48 0.00 0.00 2.90
225 226 9.255304 GCTTTATATAAGGTATGCTAGAGATGC 57.745 37.037 6.48 0.00 0.00 3.91
228 229 9.928618 TTATATAAGGTATGCTAGAGATGCTCT 57.071 33.333 0.00 2.22 43.83 4.09
230 231 9.928618 ATATAAGGTATGCTAGAGATGCTCTAA 57.071 33.333 5.75 0.00 41.74 2.10
231 232 6.588719 AAGGTATGCTAGAGATGCTCTAAG 57.411 41.667 5.75 2.42 41.74 2.18
232 233 5.886609 AGGTATGCTAGAGATGCTCTAAGA 58.113 41.667 5.75 0.00 41.74 2.10
233 234 5.945784 AGGTATGCTAGAGATGCTCTAAGAG 59.054 44.000 5.75 0.00 41.74 2.85
251 252 8.926092 TCTAAGAGCAAGTATAATAGAGCTGA 57.074 34.615 0.00 0.00 31.61 4.26
252 253 9.008965 TCTAAGAGCAAGTATAATAGAGCTGAG 57.991 37.037 0.00 0.00 31.61 3.35
253 254 7.595819 AAGAGCAAGTATAATAGAGCTGAGT 57.404 36.000 0.00 0.00 31.61 3.41
254 255 7.214467 AGAGCAAGTATAATAGAGCTGAGTC 57.786 40.000 0.00 0.00 31.61 3.36
255 256 6.775142 AGAGCAAGTATAATAGAGCTGAGTCA 59.225 38.462 0.00 0.00 31.61 3.41
256 257 6.980593 AGCAAGTATAATAGAGCTGAGTCAG 58.019 40.000 16.21 16.21 34.12 3.51
269 270 4.662468 CTGAGTCAGCAGGCTATAAGAA 57.338 45.455 7.33 0.00 32.26 2.52
270 271 5.016051 CTGAGTCAGCAGGCTATAAGAAA 57.984 43.478 7.33 0.00 32.26 2.52
271 272 5.609423 CTGAGTCAGCAGGCTATAAGAAAT 58.391 41.667 7.33 0.00 32.26 2.17
272 273 6.731292 TGAGTCAGCAGGCTATAAGAAATA 57.269 37.500 0.00 0.00 0.00 1.40
273 274 7.124573 TGAGTCAGCAGGCTATAAGAAATAA 57.875 36.000 0.00 0.00 0.00 1.40
274 275 7.564793 TGAGTCAGCAGGCTATAAGAAATAAA 58.435 34.615 0.00 0.00 0.00 1.40
275 276 7.495934 TGAGTCAGCAGGCTATAAGAAATAAAC 59.504 37.037 0.00 0.00 0.00 2.01
276 277 7.569240 AGTCAGCAGGCTATAAGAAATAAACT 58.431 34.615 0.00 0.00 0.00 2.66
277 278 8.705594 AGTCAGCAGGCTATAAGAAATAAACTA 58.294 33.333 0.00 0.00 0.00 2.24
278 279 8.983724 GTCAGCAGGCTATAAGAAATAAACTAG 58.016 37.037 0.00 0.00 0.00 2.57
279 280 8.705594 TCAGCAGGCTATAAGAAATAAACTAGT 58.294 33.333 0.00 0.00 0.00 2.57
280 281 9.982651 CAGCAGGCTATAAGAAATAAACTAGTA 57.017 33.333 0.00 0.00 0.00 1.82
300 301 8.643324 ACTAGTATATTTCTGCTTAGTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
301 302 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
302 303 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
303 304 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
304 305 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
305 306 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
306 307 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
307 308 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
308 309 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
309 310 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
310 311 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
311 312 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
312 313 5.729510 CTTAGTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
313 314 3.863086 AGTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
314 315 3.837731 AGTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
315 316 3.835395 GTTGGAGGAAAGAGAAGAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
316 317 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
317 318 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
318 319 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
319 320 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
320 321 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
321 322 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
322 323 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
323 324 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
324 325 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
325 326 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
326 327 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
327 328 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
328 329 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
329 330 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
330 331 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
331 332 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
332 333 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
333 334 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
334 335 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
335 336 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
336 337 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
337 338 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
338 339 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
339 340 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
340 341 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
341 342 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
342 343 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
343 344 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
349 350 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
350 351 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
351 352 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
359 360 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
360 361 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
361 362 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
379 380 2.751166 GCTCTAGGCACTTTGTGAGA 57.249 50.000 1.52 0.00 41.75 3.27
380 381 3.045601 GCTCTAGGCACTTTGTGAGAA 57.954 47.619 1.52 0.00 41.75 2.87
381 382 3.604582 GCTCTAGGCACTTTGTGAGAAT 58.395 45.455 1.52 0.00 41.75 2.40
382 383 3.373439 GCTCTAGGCACTTTGTGAGAATG 59.627 47.826 1.52 0.00 41.75 2.67
383 384 4.825422 CTCTAGGCACTTTGTGAGAATGA 58.175 43.478 1.52 0.00 41.75 2.57
384 385 5.227569 TCTAGGCACTTTGTGAGAATGAA 57.772 39.130 1.52 0.00 41.75 2.57
385 386 5.620206 TCTAGGCACTTTGTGAGAATGAAA 58.380 37.500 1.52 0.00 41.75 2.69
386 387 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
387 388 3.571401 AGGCACTTTGTGAGAATGAAAGG 59.429 43.478 1.52 0.00 35.23 3.11
388 389 3.319122 GGCACTTTGTGAGAATGAAAGGT 59.681 43.478 1.52 0.00 35.23 3.50
389 390 4.293415 GCACTTTGTGAGAATGAAAGGTG 58.707 43.478 1.52 0.00 35.23 4.00
390 391 4.794003 GCACTTTGTGAGAATGAAAGGTGG 60.794 45.833 1.52 0.00 35.23 4.61
391 392 4.580167 CACTTTGTGAGAATGAAAGGTGGA 59.420 41.667 0.00 0.00 35.23 4.02
392 393 5.242393 CACTTTGTGAGAATGAAAGGTGGAT 59.758 40.000 0.00 0.00 35.23 3.41
393 394 5.474876 ACTTTGTGAGAATGAAAGGTGGATC 59.525 40.000 0.00 0.00 0.00 3.36
394 395 4.639078 TGTGAGAATGAAAGGTGGATCA 57.361 40.909 0.00 0.00 0.00 2.92
395 396 4.326826 TGTGAGAATGAAAGGTGGATCAC 58.673 43.478 0.00 0.00 37.05 3.06
396 397 4.202451 TGTGAGAATGAAAGGTGGATCACA 60.202 41.667 0.00 0.00 42.38 3.58
397 398 4.946157 GTGAGAATGAAAGGTGGATCACAT 59.054 41.667 0.00 0.00 36.64 3.21
398 399 6.115446 GTGAGAATGAAAGGTGGATCACATA 58.885 40.000 0.00 0.00 36.64 2.29
399 400 6.599244 GTGAGAATGAAAGGTGGATCACATAA 59.401 38.462 0.00 0.00 36.64 1.90
400 401 7.284034 GTGAGAATGAAAGGTGGATCACATAAT 59.716 37.037 0.00 0.00 36.64 1.28
401 402 8.493607 TGAGAATGAAAGGTGGATCACATAATA 58.506 33.333 0.00 0.00 35.86 0.98
402 403 9.342308 GAGAATGAAAGGTGGATCACATAATAA 57.658 33.333 0.00 0.00 35.86 1.40
403 404 9.699410 AGAATGAAAGGTGGATCACATAATAAA 57.301 29.630 0.00 0.00 35.86 1.40
456 457 9.672673 ATTATACATGTTGACTATAAGATGGGC 57.327 33.333 2.30 0.00 36.09 5.36
457 458 5.636903 ACATGTTGACTATAAGATGGGCT 57.363 39.130 0.00 0.00 36.09 5.19
458 459 5.371526 ACATGTTGACTATAAGATGGGCTG 58.628 41.667 0.00 0.00 36.09 4.85
459 460 5.104360 ACATGTTGACTATAAGATGGGCTGT 60.104 40.000 0.00 0.00 36.09 4.40
460 461 6.099701 ACATGTTGACTATAAGATGGGCTGTA 59.900 38.462 0.00 0.00 36.09 2.74
461 462 6.161855 TGTTGACTATAAGATGGGCTGTAG 57.838 41.667 0.00 0.00 0.00 2.74
462 463 5.897250 TGTTGACTATAAGATGGGCTGTAGA 59.103 40.000 0.00 0.00 0.00 2.59
463 464 6.554982 TGTTGACTATAAGATGGGCTGTAGAT 59.445 38.462 0.00 0.00 0.00 1.98
464 465 6.596309 TGACTATAAGATGGGCTGTAGATG 57.404 41.667 0.00 0.00 0.00 2.90
465 466 6.314917 TGACTATAAGATGGGCTGTAGATGA 58.685 40.000 0.00 0.00 0.00 2.92
466 467 6.209589 TGACTATAAGATGGGCTGTAGATGAC 59.790 42.308 0.00 0.00 0.00 3.06
467 468 6.077993 ACTATAAGATGGGCTGTAGATGACA 58.922 40.000 0.00 0.00 36.35 3.58
468 469 6.728164 ACTATAAGATGGGCTGTAGATGACAT 59.272 38.462 0.00 0.00 37.45 3.06
469 470 3.766068 AGATGGGCTGTAGATGACATG 57.234 47.619 0.00 0.00 37.45 3.21
470 471 2.371179 AGATGGGCTGTAGATGACATGG 59.629 50.000 0.00 0.00 37.45 3.66
471 472 0.181114 TGGGCTGTAGATGACATGGC 59.819 55.000 0.00 0.00 37.45 4.40
472 473 0.181114 GGGCTGTAGATGACATGGCA 59.819 55.000 2.18 2.18 37.45 4.92
473 474 1.303309 GGCTGTAGATGACATGGCAC 58.697 55.000 1.45 0.00 37.45 5.01
474 475 1.303309 GCTGTAGATGACATGGCACC 58.697 55.000 1.45 0.00 37.45 5.01
475 476 1.575244 CTGTAGATGACATGGCACCG 58.425 55.000 1.45 0.00 37.45 4.94
476 477 0.461870 TGTAGATGACATGGCACCGC 60.462 55.000 1.45 0.00 31.20 5.68
477 478 3.776680 TGTAGATGACATGGCACCGCC 62.777 57.143 1.45 0.00 40.59 6.13
486 487 2.508928 GGCACCGCCTTATAGCCA 59.491 61.111 0.00 0.00 46.69 4.75
487 488 1.598130 GGCACCGCCTTATAGCCAG 60.598 63.158 0.00 0.00 46.69 4.85
488 489 2.254464 GCACCGCCTTATAGCCAGC 61.254 63.158 0.00 0.00 0.00 4.85
489 490 1.146041 CACCGCCTTATAGCCAGCA 59.854 57.895 0.00 0.00 0.00 4.41
490 491 0.882042 CACCGCCTTATAGCCAGCAG 60.882 60.000 0.00 0.00 0.00 4.24
491 492 1.963338 CCGCCTTATAGCCAGCAGC 60.963 63.158 0.00 0.00 44.25 5.25
509 510 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
510 511 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
511 512 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
512 513 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
513 514 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
514 515 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
515 516 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
516 517 7.363880 GCTGGCTATACTATTAACCATGCTCTA 60.364 40.741 0.00 0.00 0.00 2.43
517 518 8.430573 TGGCTATACTATTAACCATGCTCTAA 57.569 34.615 0.00 0.00 0.00 2.10
518 519 8.531982 TGGCTATACTATTAACCATGCTCTAAG 58.468 37.037 0.00 0.00 0.00 2.18
519 520 8.532819 GGCTATACTATTAACCATGCTCTAAGT 58.467 37.037 0.00 0.00 0.00 2.24
520 521 9.360093 GCTATACTATTAACCATGCTCTAAGTG 57.640 37.037 0.00 0.00 0.00 3.16
521 522 9.862371 CTATACTATTAACCATGCTCTAAGTGG 57.138 37.037 0.00 0.00 38.96 4.00
523 524 6.349300 ACTATTAACCATGCTCTAAGTGGTG 58.651 40.000 0.00 0.00 45.10 4.17
524 525 4.901197 TTAACCATGCTCTAAGTGGTGA 57.099 40.909 0.00 0.00 45.10 4.02
525 526 3.340814 AACCATGCTCTAAGTGGTGAG 57.659 47.619 0.00 0.00 45.10 3.51
526 527 1.556911 ACCATGCTCTAAGTGGTGAGG 59.443 52.381 0.00 0.00 44.21 3.86
527 528 1.833630 CCATGCTCTAAGTGGTGAGGA 59.166 52.381 0.00 0.00 35.27 3.71
528 529 2.237143 CCATGCTCTAAGTGGTGAGGAA 59.763 50.000 0.00 0.00 34.52 3.36
529 530 3.529533 CATGCTCTAAGTGGTGAGGAAG 58.470 50.000 0.00 0.00 34.52 3.46
530 531 1.902508 TGCTCTAAGTGGTGAGGAAGG 59.097 52.381 0.00 0.00 0.00 3.46
531 532 1.406205 GCTCTAAGTGGTGAGGAAGGC 60.406 57.143 0.00 0.00 0.00 4.35
532 533 0.895530 TCTAAGTGGTGAGGAAGGCG 59.104 55.000 0.00 0.00 0.00 5.52
533 534 0.895530 CTAAGTGGTGAGGAAGGCGA 59.104 55.000 0.00 0.00 0.00 5.54
534 535 0.895530 TAAGTGGTGAGGAAGGCGAG 59.104 55.000 0.00 0.00 0.00 5.03
535 536 1.831652 AAGTGGTGAGGAAGGCGAGG 61.832 60.000 0.00 0.00 0.00 4.63
536 537 3.003173 TGGTGAGGAAGGCGAGGG 61.003 66.667 0.00 0.00 0.00 4.30
537 538 4.475135 GGTGAGGAAGGCGAGGGC 62.475 72.222 0.00 0.00 38.90 5.19
538 539 4.821589 GTGAGGAAGGCGAGGGCG 62.822 72.222 0.00 0.00 41.24 6.13
540 541 4.821589 GAGGAAGGCGAGGGCGTG 62.822 72.222 0.00 0.00 41.24 5.34
563 564 3.031457 GCGACGCGTGTACACCAA 61.031 61.111 20.70 0.00 0.00 3.67
564 565 2.587679 GCGACGCGTGTACACCAAA 61.588 57.895 20.70 0.00 0.00 3.28
565 566 1.925771 CGACGCGTGTACACCAAAA 59.074 52.632 20.70 0.00 0.00 2.44
566 567 0.111442 CGACGCGTGTACACCAAAAG 60.111 55.000 20.70 6.93 0.00 2.27
567 568 0.233848 GACGCGTGTACACCAAAAGG 59.766 55.000 20.70 6.21 0.00 3.11
568 569 1.082366 CGCGTGTACACCAAAAGGC 60.082 57.895 20.11 14.64 0.00 4.35
569 570 1.284715 GCGTGTACACCAAAAGGCC 59.715 57.895 20.11 0.00 0.00 5.19
570 571 1.170290 GCGTGTACACCAAAAGGCCT 61.170 55.000 20.11 0.00 0.00 5.19
571 572 1.878948 GCGTGTACACCAAAAGGCCTA 60.879 52.381 20.11 0.00 0.00 3.93
572 573 1.802365 CGTGTACACCAAAAGGCCTAC 59.198 52.381 20.11 0.00 0.00 3.18
573 574 2.156917 GTGTACACCAAAAGGCCTACC 58.843 52.381 15.42 0.00 0.00 3.18
574 575 1.270947 TGTACACCAAAAGGCCTACCG 60.271 52.381 5.16 0.00 42.76 4.02
579 580 1.165270 CCAAAAGGCCTACCGAAGTG 58.835 55.000 5.16 0.00 42.76 3.16
583 584 0.323957 AAGGCCTACCGAAGTGTTCC 59.676 55.000 5.16 0.00 42.76 3.62
589 590 0.604578 TACCGAAGTGTTCCTTCCCG 59.395 55.000 0.00 0.00 45.75 5.14
692 693 3.432588 CGTCCAGCGACCGACTCT 61.433 66.667 0.00 0.00 44.77 3.24
704 705 0.106918 CCGACTCTACTCCTGCTCCT 60.107 60.000 0.00 0.00 0.00 3.69
717 718 4.821589 CTCCTCCGCTCCCGTTGC 62.822 72.222 0.00 0.00 0.00 4.17
773 780 1.079543 CTAGTCTGCTGCCGCTGTT 60.080 57.895 0.70 0.00 36.58 3.16
831 841 1.226717 GTCCATCTCGTCGGCTGAC 60.227 63.158 16.12 16.12 41.91 3.51
889 902 4.246206 CGAGACGATGCCGCGGTA 62.246 66.667 28.70 25.02 39.95 4.02
1311 1328 1.597742 GTCACAAGAGAAGCAGGCAA 58.402 50.000 0.00 0.00 0.00 4.52
1345 1362 2.773661 TGCTGCTCTTTCCTGGATATGA 59.226 45.455 0.00 0.00 0.00 2.15
1506 1523 3.736252 AGAATGCGCTCGTTGATATGTAC 59.264 43.478 9.73 0.00 0.00 2.90
1585 1602 0.108992 TATTGTGTCCTGGACGTCGC 60.109 55.000 21.15 11.84 34.95 5.19
2007 2024 2.158623 ACTTGGTCTTGCAGTGAATGGA 60.159 45.455 0.00 0.00 0.00 3.41
2532 2549 4.518970 ACAATTCACGAATTTGTAGCTGGT 59.481 37.500 0.00 0.00 38.84 4.00
2601 2618 4.566987 AGGTACTCACGGATTTGAAGAAC 58.433 43.478 0.00 0.00 0.00 3.01
2607 2624 1.737793 ACGGATTTGAAGAACGATGGC 59.262 47.619 0.00 0.00 0.00 4.40
2806 2823 9.027129 CAATTAAATTGATCACCAAGCTGTATG 57.973 33.333 0.00 0.00 42.83 2.39
3060 3077 3.202818 TCTCACACCAATGGAAGCCATAT 59.797 43.478 6.16 0.00 44.40 1.78
3100 3117 3.902218 GGATCATCCCCAAACATCTTGA 58.098 45.455 0.00 0.00 0.00 3.02
3151 3168 7.537715 TGATTGTTATATTGACAGTTTGGCAG 58.462 34.615 0.00 0.00 36.33 4.85
3154 3171 7.144722 TGTTATATTGACAGTTTGGCAGAAG 57.855 36.000 0.00 0.00 36.33 2.85
3158 3175 1.939934 TGACAGTTTGGCAGAAGTTCG 59.060 47.619 0.00 0.00 28.05 3.95
3161 3178 2.549754 ACAGTTTGGCAGAAGTTCGATG 59.450 45.455 0.00 0.00 0.00 3.84
3180 3197 8.932791 GTTCGATGAAAAGAAAGGTGAGTTATA 58.067 33.333 0.00 0.00 0.00 0.98
3209 3226 7.660112 TGTCATGCAATCTGTATTCTTTTTGT 58.340 30.769 0.00 0.00 0.00 2.83
3381 3400 0.978907 TGATTCACTGGCTCTGCAGA 59.021 50.000 17.19 17.19 0.00 4.26
3590 3617 1.350071 TCCCGTTGCCTAGTTGGTAA 58.650 50.000 0.00 0.00 38.10 2.85
3600 3627 5.719173 TGCCTAGTTGGTAATTGAATTTGC 58.281 37.500 0.00 0.00 38.35 3.68
3637 3664 7.907214 ACATTGACCTACTTTGATTGTAGAC 57.093 36.000 0.00 0.00 39.61 2.59
3678 3705 7.877612 TGTTCATAGTTGCTCAGTAAATCTTGA 59.122 33.333 0.00 0.00 0.00 3.02
3679 3706 8.721478 GTTCATAGTTGCTCAGTAAATCTTGAA 58.279 33.333 0.00 0.00 0.00 2.69
3680 3707 8.846943 TCATAGTTGCTCAGTAAATCTTGAAA 57.153 30.769 0.00 0.00 0.00 2.69
3681 3708 8.939929 TCATAGTTGCTCAGTAAATCTTGAAAG 58.060 33.333 0.00 0.00 0.00 2.62
3682 3709 8.725148 CATAGTTGCTCAGTAAATCTTGAAAGT 58.275 33.333 0.00 0.00 0.00 2.66
3683 3710 7.573968 AGTTGCTCAGTAAATCTTGAAAGTT 57.426 32.000 0.00 0.00 0.00 2.66
3684 3711 7.420800 AGTTGCTCAGTAAATCTTGAAAGTTG 58.579 34.615 0.00 0.00 0.00 3.16
3719 3746 7.575414 TGAAACAGCCACTCTATTTAAAACA 57.425 32.000 0.00 0.00 0.00 2.83
3755 3782 7.335924 ACACCATGGTATAAGTTATTCACACAC 59.664 37.037 19.28 0.00 0.00 3.82
3768 3795 4.258206 CACACCTTTGTGCCCACT 57.742 55.556 0.00 0.00 46.60 4.00
3778 3805 2.949177 TGTGCCCACTGTTGTTAGAT 57.051 45.000 0.00 0.00 0.00 1.98
3779 3806 4.359434 TTGTGCCCACTGTTGTTAGATA 57.641 40.909 0.00 0.00 0.00 1.98
3780 3807 3.670625 TGTGCCCACTGTTGTTAGATAC 58.329 45.455 0.00 0.00 0.00 2.24
3805 3832 9.364653 ACTACCTCCGTATCAAAATATAAGACT 57.635 33.333 0.00 0.00 0.00 3.24
3844 3871 8.502161 AATTGAAGTGCAAAAACGTCTTATAC 57.498 30.769 0.00 0.00 40.48 1.47
3878 3906 8.804204 CGGAGGGAGTAATACATACTTTTATCT 58.196 37.037 0.00 0.00 45.00 1.98
3880 3908 9.930693 GAGGGAGTAATACATACTTTTATCTGG 57.069 37.037 0.00 0.00 45.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.212900 ATTTCAGCCCGCGCTTTTCC 62.213 55.000 5.56 0.00 45.55 3.13
2 3 1.072666 CATTTCAGCCCGCGCTTTTC 61.073 55.000 5.56 0.00 45.55 2.29
3 4 1.080569 CATTTCAGCCCGCGCTTTT 60.081 52.632 5.56 0.00 45.55 2.27
4 5 1.805428 AACATTTCAGCCCGCGCTTT 61.805 50.000 5.56 0.00 45.55 3.51
5 6 2.200170 GAACATTTCAGCCCGCGCTT 62.200 55.000 5.56 0.00 45.55 4.68
7 8 2.202479 GAACATTTCAGCCCGCGC 60.202 61.111 0.00 0.00 0.00 6.86
8 9 2.098298 CGAACATTTCAGCCCGCG 59.902 61.111 0.00 0.00 0.00 6.46
9 10 2.202479 GCGAACATTTCAGCCCGC 60.202 61.111 0.00 0.00 35.91 6.13
10 11 2.485122 GGCGAACATTTCAGCCCG 59.515 61.111 9.33 0.00 40.79 6.13
12 13 1.508088 CTGGGCGAACATTTCAGCC 59.492 57.895 11.12 11.12 43.64 4.85
13 14 1.153958 GCTGGGCGAACATTTCAGC 60.154 57.895 0.00 0.00 42.89 4.26
14 15 1.243342 TGGCTGGGCGAACATTTCAG 61.243 55.000 0.00 0.00 0.00 3.02
15 16 0.825425 TTGGCTGGGCGAACATTTCA 60.825 50.000 0.00 0.00 0.00 2.69
16 17 0.388520 GTTGGCTGGGCGAACATTTC 60.389 55.000 11.37 0.00 44.46 2.17
17 18 1.665442 GTTGGCTGGGCGAACATTT 59.335 52.632 11.37 0.00 44.46 2.32
18 19 2.275380 GGTTGGCTGGGCGAACATT 61.275 57.895 16.43 0.00 46.30 2.71
19 20 2.676471 GGTTGGCTGGGCGAACAT 60.676 61.111 16.43 0.00 46.30 2.71
55 56 2.882132 CGAAAATGCGGGTTCCCC 59.118 61.111 1.93 0.00 41.09 4.81
56 57 2.180769 GCGAAAATGCGGGTTCCC 59.819 61.111 0.00 0.00 0.00 3.97
64 65 1.944234 ATCCCAACCCGCGAAAATGC 61.944 55.000 8.23 0.00 0.00 3.56
65 66 0.179140 CATCCCAACCCGCGAAAATG 60.179 55.000 8.23 0.32 0.00 2.32
66 67 1.319614 CCATCCCAACCCGCGAAAAT 61.320 55.000 8.23 0.00 0.00 1.82
67 68 1.974343 CCATCCCAACCCGCGAAAA 60.974 57.895 8.23 0.00 0.00 2.29
68 69 2.360600 CCATCCCAACCCGCGAAA 60.361 61.111 8.23 0.00 0.00 3.46
69 70 4.418328 CCCATCCCAACCCGCGAA 62.418 66.667 8.23 0.00 0.00 4.70
71 72 3.714487 ATTCCCATCCCAACCCGCG 62.714 63.158 0.00 0.00 0.00 6.46
72 73 0.106419 TAATTCCCATCCCAACCCGC 60.106 55.000 0.00 0.00 0.00 6.13
73 74 2.238521 CATAATTCCCATCCCAACCCG 58.761 52.381 0.00 0.00 0.00 5.28
74 75 1.970640 GCATAATTCCCATCCCAACCC 59.029 52.381 0.00 0.00 0.00 4.11
75 76 1.970640 GGCATAATTCCCATCCCAACC 59.029 52.381 0.00 0.00 0.00 3.77
76 77 1.613437 CGGCATAATTCCCATCCCAAC 59.387 52.381 0.00 0.00 0.00 3.77
77 78 1.993956 CGGCATAATTCCCATCCCAA 58.006 50.000 0.00 0.00 0.00 4.12
78 79 0.539438 GCGGCATAATTCCCATCCCA 60.539 55.000 0.00 0.00 0.00 4.37
79 80 1.586154 CGCGGCATAATTCCCATCCC 61.586 60.000 0.00 0.00 0.00 3.85
80 81 1.875963 CGCGGCATAATTCCCATCC 59.124 57.895 0.00 0.00 0.00 3.51
81 82 1.210155 GCGCGGCATAATTCCCATC 59.790 57.895 8.83 0.00 0.00 3.51
82 83 2.268076 GGCGCGGCATAATTCCCAT 61.268 57.895 29.32 0.00 0.00 4.00
83 84 2.904866 GGCGCGGCATAATTCCCA 60.905 61.111 29.32 0.00 0.00 4.37
84 85 3.670377 GGGCGCGGCATAATTCCC 61.670 66.667 34.30 16.68 0.00 3.97
85 86 3.670377 GGGGCGCGGCATAATTCC 61.670 66.667 34.30 20.66 0.00 3.01
86 87 2.904866 TGGGGCGCGGCATAATTC 60.905 61.111 34.30 15.35 0.00 2.17
87 88 3.216292 GTGGGGCGCGGCATAATT 61.216 61.111 34.30 0.00 0.00 1.40
88 89 4.497984 TGTGGGGCGCGGCATAAT 62.498 61.111 34.30 0.00 0.00 1.28
89 90 4.724501 TTGTGGGGCGCGGCATAA 62.725 61.111 34.30 18.88 0.00 1.90
90 91 4.724501 TTTGTGGGGCGCGGCATA 62.725 61.111 34.30 19.28 0.00 3.14
94 95 2.153547 ATTCTTTTTGTGGGGCGCGG 62.154 55.000 8.83 0.00 0.00 6.46
95 96 0.319469 AATTCTTTTTGTGGGGCGCG 60.319 50.000 0.00 0.00 0.00 6.86
96 97 1.877637 AAATTCTTTTTGTGGGGCGC 58.122 45.000 0.00 0.00 0.00 6.53
97 98 2.983803 CGTAAATTCTTTTTGTGGGGCG 59.016 45.455 0.00 0.00 0.00 6.13
98 99 3.738791 CACGTAAATTCTTTTTGTGGGGC 59.261 43.478 0.00 0.00 31.51 5.80
99 100 4.939271 ACACGTAAATTCTTTTTGTGGGG 58.061 39.130 0.00 0.00 35.74 4.96
100 101 5.583495 TGACACGTAAATTCTTTTTGTGGG 58.417 37.500 0.00 0.00 35.74 4.61
101 102 6.413818 GTCTGACACGTAAATTCTTTTTGTGG 59.586 38.462 2.24 0.00 35.74 4.17
102 103 6.138546 CGTCTGACACGTAAATTCTTTTTGTG 59.861 38.462 8.73 0.00 44.07 3.33
103 104 6.189567 CGTCTGACACGTAAATTCTTTTTGT 58.810 36.000 8.73 0.00 44.07 2.83
104 105 6.639709 CGTCTGACACGTAAATTCTTTTTG 57.360 37.500 8.73 0.00 44.07 2.44
127 128 1.443702 GATCAAACCCCGCAAACGC 60.444 57.895 0.00 0.00 38.22 4.84
128 129 1.154301 CGATCAAACCCCGCAAACG 60.154 57.895 0.00 0.00 39.67 3.60
129 130 0.168128 CTCGATCAAACCCCGCAAAC 59.832 55.000 0.00 0.00 0.00 2.93
130 131 1.582610 GCTCGATCAAACCCCGCAAA 61.583 55.000 0.00 0.00 0.00 3.68
131 132 2.038269 GCTCGATCAAACCCCGCAA 61.038 57.895 0.00 0.00 0.00 4.85
132 133 2.435938 GCTCGATCAAACCCCGCA 60.436 61.111 0.00 0.00 0.00 5.69
133 134 2.435938 TGCTCGATCAAACCCCGC 60.436 61.111 0.00 0.00 0.00 6.13
134 135 2.464459 GCTGCTCGATCAAACCCCG 61.464 63.158 0.00 0.00 0.00 5.73
135 136 0.749454 ATGCTGCTCGATCAAACCCC 60.749 55.000 0.00 0.00 0.00 4.95
136 137 1.098050 AATGCTGCTCGATCAAACCC 58.902 50.000 0.00 0.00 0.00 4.11
137 138 2.927553 AAATGCTGCTCGATCAAACC 57.072 45.000 0.00 0.00 0.00 3.27
138 139 3.850273 CAGAAAATGCTGCTCGATCAAAC 59.150 43.478 0.00 0.00 0.00 2.93
139 140 4.087510 CAGAAAATGCTGCTCGATCAAA 57.912 40.909 0.00 0.00 0.00 2.69
140 141 3.752412 CAGAAAATGCTGCTCGATCAA 57.248 42.857 0.00 0.00 0.00 2.57
162 163 1.295645 CGTCAAAATACGCGTCGGC 60.296 57.895 18.63 0.43 35.87 5.54
163 164 1.342473 CCGTCAAAATACGCGTCGG 59.658 57.895 18.63 17.66 41.51 4.79
164 165 0.435769 AACCGTCAAAATACGCGTCG 59.564 50.000 18.63 11.64 41.51 5.12
165 166 3.912708 ATAACCGTCAAAATACGCGTC 57.087 42.857 18.63 0.00 41.51 5.19
166 167 4.666928 AAATAACCGTCAAAATACGCGT 57.333 36.364 19.17 19.17 41.51 6.01
167 168 5.165889 CGTAAAATAACCGTCAAAATACGCG 59.834 40.000 3.53 3.53 41.51 6.01
168 169 5.448796 CCGTAAAATAACCGTCAAAATACGC 59.551 40.000 0.00 0.00 41.51 4.42
169 170 5.958949 CCCGTAAAATAACCGTCAAAATACG 59.041 40.000 0.00 0.00 42.49 3.06
170 171 6.841119 ACCCGTAAAATAACCGTCAAAATAC 58.159 36.000 0.00 0.00 0.00 1.89
171 172 7.303998 CAACCCGTAAAATAACCGTCAAAATA 58.696 34.615 0.00 0.00 0.00 1.40
172 173 5.963176 ACCCGTAAAATAACCGTCAAAAT 57.037 34.783 0.00 0.00 0.00 1.82
173 174 5.517904 CAACCCGTAAAATAACCGTCAAAA 58.482 37.500 0.00 0.00 0.00 2.44
174 175 4.556302 GCAACCCGTAAAATAACCGTCAAA 60.556 41.667 0.00 0.00 0.00 2.69
175 176 3.058363 GCAACCCGTAAAATAACCGTCAA 60.058 43.478 0.00 0.00 0.00 3.18
176 177 2.483491 GCAACCCGTAAAATAACCGTCA 59.517 45.455 0.00 0.00 0.00 4.35
177 178 2.474361 CGCAACCCGTAAAATAACCGTC 60.474 50.000 0.00 0.00 0.00 4.79
178 179 1.464219 CGCAACCCGTAAAATAACCGT 59.536 47.619 0.00 0.00 0.00 4.83
179 180 1.202054 CCGCAACCCGTAAAATAACCG 60.202 52.381 0.00 0.00 34.38 4.44
180 181 1.467883 GCCGCAACCCGTAAAATAACC 60.468 52.381 0.00 0.00 34.38 2.85
181 182 1.469703 AGCCGCAACCCGTAAAATAAC 59.530 47.619 0.00 0.00 34.38 1.89
182 183 1.823797 AGCCGCAACCCGTAAAATAA 58.176 45.000 0.00 0.00 34.38 1.40
183 184 1.823797 AAGCCGCAACCCGTAAAATA 58.176 45.000 0.00 0.00 34.38 1.40
184 185 0.963225 AAAGCCGCAACCCGTAAAAT 59.037 45.000 0.00 0.00 34.38 1.82
185 186 1.602311 TAAAGCCGCAACCCGTAAAA 58.398 45.000 0.00 0.00 34.38 1.52
186 187 1.823797 ATAAAGCCGCAACCCGTAAA 58.176 45.000 0.00 0.00 34.38 2.01
187 188 2.687700 TATAAAGCCGCAACCCGTAA 57.312 45.000 0.00 0.00 34.38 3.18
188 189 2.914695 ATATAAAGCCGCAACCCGTA 57.085 45.000 0.00 0.00 34.38 4.02
189 190 2.914695 TATATAAAGCCGCAACCCGT 57.085 45.000 0.00 0.00 34.38 5.28
190 191 2.482721 CCTTATATAAAGCCGCAACCCG 59.517 50.000 0.00 0.00 0.00 5.28
191 192 3.483421 ACCTTATATAAAGCCGCAACCC 58.517 45.455 0.00 0.00 0.00 4.11
192 193 5.391629 GCATACCTTATATAAAGCCGCAACC 60.392 44.000 0.00 0.00 0.00 3.77
193 194 5.411669 AGCATACCTTATATAAAGCCGCAAC 59.588 40.000 0.00 0.00 0.00 4.17
194 195 5.556915 AGCATACCTTATATAAAGCCGCAA 58.443 37.500 0.00 0.00 0.00 4.85
195 196 5.160607 AGCATACCTTATATAAAGCCGCA 57.839 39.130 0.00 0.00 0.00 5.69
196 197 6.570692 TCTAGCATACCTTATATAAAGCCGC 58.429 40.000 0.00 0.00 0.00 6.53
197 198 7.997482 TCTCTAGCATACCTTATATAAAGCCG 58.003 38.462 0.00 0.00 0.00 5.52
198 199 9.757227 CATCTCTAGCATACCTTATATAAAGCC 57.243 37.037 0.00 0.00 0.00 4.35
199 200 9.255304 GCATCTCTAGCATACCTTATATAAAGC 57.745 37.037 0.00 0.00 0.00 3.51
225 226 9.008965 TCAGCTCTATTATACTTGCTCTTAGAG 57.991 37.037 4.63 4.63 36.09 2.43
226 227 8.926092 TCAGCTCTATTATACTTGCTCTTAGA 57.074 34.615 0.00 0.00 0.00 2.10
227 228 8.792633 ACTCAGCTCTATTATACTTGCTCTTAG 58.207 37.037 0.00 0.00 0.00 2.18
228 229 8.698973 ACTCAGCTCTATTATACTTGCTCTTA 57.301 34.615 0.00 0.00 0.00 2.10
229 230 7.286546 TGACTCAGCTCTATTATACTTGCTCTT 59.713 37.037 0.00 0.00 0.00 2.85
230 231 6.775142 TGACTCAGCTCTATTATACTTGCTCT 59.225 38.462 0.00 0.00 0.00 4.09
231 232 6.976088 TGACTCAGCTCTATTATACTTGCTC 58.024 40.000 0.00 0.00 0.00 4.26
232 233 6.968263 TGACTCAGCTCTATTATACTTGCT 57.032 37.500 0.00 0.00 0.00 3.91
248 249 4.662468 TTCTTATAGCCTGCTGACTCAG 57.338 45.455 0.97 1.21 34.12 3.35
249 250 5.620738 ATTTCTTATAGCCTGCTGACTCA 57.379 39.130 0.97 0.00 0.00 3.41
250 251 7.713073 AGTTTATTTCTTATAGCCTGCTGACTC 59.287 37.037 0.97 0.00 0.00 3.36
251 252 7.569240 AGTTTATTTCTTATAGCCTGCTGACT 58.431 34.615 0.97 0.00 0.00 3.41
252 253 7.793927 AGTTTATTTCTTATAGCCTGCTGAC 57.206 36.000 0.97 0.00 0.00 3.51
253 254 8.705594 ACTAGTTTATTTCTTATAGCCTGCTGA 58.294 33.333 0.97 0.00 0.00 4.26
254 255 8.894768 ACTAGTTTATTTCTTATAGCCTGCTG 57.105 34.615 0.97 0.00 0.00 4.41
274 275 8.643324 CCTCCAACTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
275 276 8.861086 TCCTCCAACTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
276 277 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
277 278 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
278 279 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
279 280 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
280 281 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
281 282 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
282 283 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
283 284 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
284 285 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
285 286 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
286 287 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
287 288 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
288 289 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
289 290 5.482175 TCCTCTTCTCTTTCCTCCAACTAAG 59.518 44.000 0.00 0.00 0.00 2.18
290 291 5.403512 TCCTCTTCTCTTTCCTCCAACTAA 58.596 41.667 0.00 0.00 0.00 2.24
291 292 5.011982 TCCTCTTCTCTTTCCTCCAACTA 57.988 43.478 0.00 0.00 0.00 2.24
292 293 3.837731 CTCCTCTTCTCTTTCCTCCAACT 59.162 47.826 0.00 0.00 0.00 3.16
293 294 3.835395 TCTCCTCTTCTCTTTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
294 295 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
295 296 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
296 297 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
297 298 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
298 299 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
299 300 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
300 301 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
301 302 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
302 303 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
303 304 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
304 305 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
305 306 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
306 307 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
307 308 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
308 309 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
309 310 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
310 311 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
311 312 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
312 313 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
313 314 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
314 315 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
315 316 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
316 317 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
317 318 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
318 319 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
319 320 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
320 321 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
321 322 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
322 323 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
323 324 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
324 325 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
325 326 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
326 327 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
332 333 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
333 334 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
334 335 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
342 343 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
343 344 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
344 345 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
360 361 2.751166 TCTCACAAAGTGCCTAGAGC 57.249 50.000 0.00 0.00 44.14 4.09
361 362 4.825422 TCATTCTCACAAAGTGCCTAGAG 58.175 43.478 0.00 0.00 32.98 2.43
362 363 4.890158 TCATTCTCACAAAGTGCCTAGA 57.110 40.909 0.00 0.00 32.98 2.43
363 364 5.106396 CCTTTCATTCTCACAAAGTGCCTAG 60.106 44.000 0.00 0.00 32.98 3.02
364 365 4.761739 CCTTTCATTCTCACAAAGTGCCTA 59.238 41.667 0.00 0.00 32.98 3.93
365 366 3.571401 CCTTTCATTCTCACAAAGTGCCT 59.429 43.478 0.00 0.00 32.98 4.75
366 367 3.319122 ACCTTTCATTCTCACAAAGTGCC 59.681 43.478 0.00 0.00 32.98 5.01
367 368 4.293415 CACCTTTCATTCTCACAAAGTGC 58.707 43.478 0.00 0.00 32.98 4.40
368 369 4.580167 TCCACCTTTCATTCTCACAAAGTG 59.420 41.667 0.00 0.00 34.45 3.16
369 370 4.792068 TCCACCTTTCATTCTCACAAAGT 58.208 39.130 0.00 0.00 0.00 2.66
370 371 5.474532 TGATCCACCTTTCATTCTCACAAAG 59.525 40.000 0.00 0.00 0.00 2.77
371 372 5.241506 GTGATCCACCTTTCATTCTCACAAA 59.758 40.000 0.00 0.00 33.66 2.83
372 373 4.761739 GTGATCCACCTTTCATTCTCACAA 59.238 41.667 0.00 0.00 33.66 3.33
373 374 4.202451 TGTGATCCACCTTTCATTCTCACA 60.202 41.667 0.00 0.00 39.36 3.58
374 375 4.326826 TGTGATCCACCTTTCATTCTCAC 58.673 43.478 0.00 0.00 32.73 3.51
375 376 4.639078 TGTGATCCACCTTTCATTCTCA 57.361 40.909 0.00 0.00 32.73 3.27
376 377 7.814264 ATTATGTGATCCACCTTTCATTCTC 57.186 36.000 0.00 0.00 32.73 2.87
377 378 9.699410 TTTATTATGTGATCCACCTTTCATTCT 57.301 29.630 0.00 0.00 32.73 2.40
430 431 9.672673 GCCCATCTTATAGTCAACATGTATAAT 57.327 33.333 0.00 0.00 0.00 1.28
431 432 8.880244 AGCCCATCTTATAGTCAACATGTATAA 58.120 33.333 0.00 0.00 0.00 0.98
432 433 8.314021 CAGCCCATCTTATAGTCAACATGTATA 58.686 37.037 0.00 0.00 0.00 1.47
433 434 7.164122 CAGCCCATCTTATAGTCAACATGTAT 58.836 38.462 0.00 0.00 0.00 2.29
434 435 6.099701 ACAGCCCATCTTATAGTCAACATGTA 59.900 38.462 0.00 0.00 0.00 2.29
435 436 5.104360 ACAGCCCATCTTATAGTCAACATGT 60.104 40.000 0.00 0.00 0.00 3.21
436 437 5.371526 ACAGCCCATCTTATAGTCAACATG 58.628 41.667 0.00 0.00 0.00 3.21
437 438 5.636903 ACAGCCCATCTTATAGTCAACAT 57.363 39.130 0.00 0.00 0.00 2.71
438 439 5.897250 TCTACAGCCCATCTTATAGTCAACA 59.103 40.000 0.00 0.00 0.00 3.33
439 440 6.406692 TCTACAGCCCATCTTATAGTCAAC 57.593 41.667 0.00 0.00 0.00 3.18
440 441 6.782494 TCATCTACAGCCCATCTTATAGTCAA 59.218 38.462 0.00 0.00 0.00 3.18
441 442 6.209589 GTCATCTACAGCCCATCTTATAGTCA 59.790 42.308 0.00 0.00 0.00 3.41
442 443 6.209589 TGTCATCTACAGCCCATCTTATAGTC 59.790 42.308 0.00 0.00 33.01 2.59
443 444 6.077993 TGTCATCTACAGCCCATCTTATAGT 58.922 40.000 0.00 0.00 33.01 2.12
444 445 6.596309 TGTCATCTACAGCCCATCTTATAG 57.404 41.667 0.00 0.00 33.01 1.31
445 446 6.070596 CCATGTCATCTACAGCCCATCTTATA 60.071 42.308 0.00 0.00 42.70 0.98
446 447 5.280368 CCATGTCATCTACAGCCCATCTTAT 60.280 44.000 0.00 0.00 42.70 1.73
447 448 4.040829 CCATGTCATCTACAGCCCATCTTA 59.959 45.833 0.00 0.00 42.70 2.10
448 449 3.181447 CCATGTCATCTACAGCCCATCTT 60.181 47.826 0.00 0.00 42.70 2.40
449 450 2.371179 CCATGTCATCTACAGCCCATCT 59.629 50.000 0.00 0.00 42.70 2.90
450 451 2.775890 CCATGTCATCTACAGCCCATC 58.224 52.381 0.00 0.00 42.70 3.51
451 452 1.202855 GCCATGTCATCTACAGCCCAT 60.203 52.381 0.00 0.00 42.70 4.00
452 453 0.181114 GCCATGTCATCTACAGCCCA 59.819 55.000 0.00 0.00 42.70 5.36
453 454 0.181114 TGCCATGTCATCTACAGCCC 59.819 55.000 0.00 0.00 42.70 5.19
454 455 1.303309 GTGCCATGTCATCTACAGCC 58.697 55.000 0.00 0.00 42.70 4.85
455 456 1.303309 GGTGCCATGTCATCTACAGC 58.697 55.000 0.00 0.00 42.70 4.40
456 457 1.575244 CGGTGCCATGTCATCTACAG 58.425 55.000 0.00 0.00 42.70 2.74
457 458 0.461870 GCGGTGCCATGTCATCTACA 60.462 55.000 0.00 0.00 43.86 2.74
458 459 2.311294 GCGGTGCCATGTCATCTAC 58.689 57.895 0.00 0.00 0.00 2.59
459 460 4.855105 GCGGTGCCATGTCATCTA 57.145 55.556 0.00 0.00 0.00 1.98
470 471 4.049393 CTGGCTATAAGGCGGTGC 57.951 61.111 1.33 0.00 44.78 5.01
474 475 3.647824 GCTGCTGGCTATAAGGCG 58.352 61.111 0.00 0.00 44.78 5.52
487 488 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
488 489 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
489 490 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
490 491 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
491 492 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
492 493 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
493 494 8.532819 ACTTAGAGCATGGTTAATAGTATAGCC 58.467 37.037 0.00 0.00 0.00 3.93
494 495 9.360093 CACTTAGAGCATGGTTAATAGTATAGC 57.640 37.037 0.00 0.00 0.00 2.97
495 496 9.862371 CCACTTAGAGCATGGTTAATAGTATAG 57.138 37.037 0.00 0.00 0.00 1.31
496 497 9.375974 ACCACTTAGAGCATGGTTAATAGTATA 57.624 33.333 0.00 0.00 44.51 1.47
497 498 8.150945 CACCACTTAGAGCATGGTTAATAGTAT 58.849 37.037 0.00 0.00 44.51 2.12
498 499 7.343574 TCACCACTTAGAGCATGGTTAATAGTA 59.656 37.037 0.00 0.00 44.51 1.82
499 500 6.156256 TCACCACTTAGAGCATGGTTAATAGT 59.844 38.462 0.00 0.00 44.51 2.12
500 501 6.582636 TCACCACTTAGAGCATGGTTAATAG 58.417 40.000 0.00 0.00 44.51 1.73
501 502 6.408092 CCTCACCACTTAGAGCATGGTTAATA 60.408 42.308 0.00 0.00 44.51 0.98
502 503 5.431765 CTCACCACTTAGAGCATGGTTAAT 58.568 41.667 0.00 0.00 44.51 1.40
503 504 4.323485 CCTCACCACTTAGAGCATGGTTAA 60.323 45.833 0.00 0.00 44.51 2.01
504 505 3.197766 CCTCACCACTTAGAGCATGGTTA 59.802 47.826 0.00 0.00 44.51 2.85
505 506 2.026822 CCTCACCACTTAGAGCATGGTT 60.027 50.000 0.00 0.00 44.51 3.67
507 508 1.833630 TCCTCACCACTTAGAGCATGG 59.166 52.381 0.00 0.00 39.57 3.66
508 509 3.529533 CTTCCTCACCACTTAGAGCATG 58.470 50.000 0.00 0.00 0.00 4.06
509 510 2.503356 CCTTCCTCACCACTTAGAGCAT 59.497 50.000 0.00 0.00 0.00 3.79
510 511 1.902508 CCTTCCTCACCACTTAGAGCA 59.097 52.381 0.00 0.00 0.00 4.26
511 512 1.406205 GCCTTCCTCACCACTTAGAGC 60.406 57.143 0.00 0.00 0.00 4.09
512 513 1.134965 CGCCTTCCTCACCACTTAGAG 60.135 57.143 0.00 0.00 0.00 2.43
513 514 0.895530 CGCCTTCCTCACCACTTAGA 59.104 55.000 0.00 0.00 0.00 2.10
514 515 0.895530 TCGCCTTCCTCACCACTTAG 59.104 55.000 0.00 0.00 0.00 2.18
515 516 0.895530 CTCGCCTTCCTCACCACTTA 59.104 55.000 0.00 0.00 0.00 2.24
516 517 1.674057 CTCGCCTTCCTCACCACTT 59.326 57.895 0.00 0.00 0.00 3.16
517 518 2.286523 CCTCGCCTTCCTCACCACT 61.287 63.158 0.00 0.00 0.00 4.00
518 519 2.266055 CCTCGCCTTCCTCACCAC 59.734 66.667 0.00 0.00 0.00 4.16
519 520 3.003173 CCCTCGCCTTCCTCACCA 61.003 66.667 0.00 0.00 0.00 4.17
520 521 4.475135 GCCCTCGCCTTCCTCACC 62.475 72.222 0.00 0.00 0.00 4.02
521 522 4.821589 CGCCCTCGCCTTCCTCAC 62.822 72.222 0.00 0.00 0.00 3.51
523 524 4.821589 CACGCCCTCGCCTTCCTC 62.822 72.222 0.00 0.00 39.84 3.71
546 547 2.091776 TTTTGGTGTACACGCGTCGC 62.092 55.000 19.41 7.29 0.00 5.19
547 548 0.111442 CTTTTGGTGTACACGCGTCG 60.111 55.000 19.41 8.08 0.00 5.12
548 549 0.233848 CCTTTTGGTGTACACGCGTC 59.766 55.000 19.41 6.48 34.07 5.19
549 550 1.778027 GCCTTTTGGTGTACACGCGT 61.778 55.000 19.41 5.58 42.99 6.01
550 551 1.082366 GCCTTTTGGTGTACACGCG 60.082 57.895 19.41 3.53 42.99 6.01
551 552 1.170290 AGGCCTTTTGGTGTACACGC 61.170 55.000 19.41 15.05 42.99 5.34
552 553 1.802365 GTAGGCCTTTTGGTGTACACG 59.198 52.381 12.58 5.97 42.99 4.49
553 554 2.156917 GGTAGGCCTTTTGGTGTACAC 58.843 52.381 12.58 18.01 42.99 2.90
554 555 1.270947 CGGTAGGCCTTTTGGTGTACA 60.271 52.381 12.58 0.00 42.99 2.90
555 556 1.002315 TCGGTAGGCCTTTTGGTGTAC 59.998 52.381 12.58 0.00 42.99 2.90
556 557 1.350071 TCGGTAGGCCTTTTGGTGTA 58.650 50.000 12.58 0.00 42.99 2.90
557 558 0.475044 TTCGGTAGGCCTTTTGGTGT 59.525 50.000 12.58 0.00 42.99 4.16
558 559 1.165270 CTTCGGTAGGCCTTTTGGTG 58.835 55.000 12.58 0.00 42.99 4.17
559 560 0.769247 ACTTCGGTAGGCCTTTTGGT 59.231 50.000 12.58 0.00 42.99 3.67
560 561 1.165270 CACTTCGGTAGGCCTTTTGG 58.835 55.000 12.58 0.00 44.18 3.28
561 562 1.892209 ACACTTCGGTAGGCCTTTTG 58.108 50.000 12.58 0.00 0.00 2.44
562 563 2.501261 GAACACTTCGGTAGGCCTTTT 58.499 47.619 12.58 0.00 0.00 2.27
563 564 1.271217 GGAACACTTCGGTAGGCCTTT 60.271 52.381 12.58 0.00 0.00 3.11
564 565 0.323957 GGAACACTTCGGTAGGCCTT 59.676 55.000 12.58 0.00 0.00 4.35
565 566 0.544595 AGGAACACTTCGGTAGGCCT 60.545 55.000 11.78 11.78 0.00 5.19
566 567 0.323957 AAGGAACACTTCGGTAGGCC 59.676 55.000 0.00 0.00 32.85 5.19
567 568 1.723220 GAAGGAACACTTCGGTAGGC 58.277 55.000 0.00 0.00 45.51 3.93
579 580 2.046217 GGACAGCCGGGAAGGAAC 60.046 66.667 2.18 0.00 45.00 3.62
686 687 1.305201 GAGGAGCAGGAGTAGAGTCG 58.695 60.000 0.00 0.00 0.00 4.18
692 693 1.454111 GAGCGGAGGAGCAGGAGTA 60.454 63.158 0.00 0.00 40.15 2.59
743 744 1.178276 CAGACTAGAAGACACGGGCT 58.822 55.000 0.00 0.00 0.00 5.19
773 780 1.287815 CACGCCTGGTCTACGAACA 59.712 57.895 0.00 0.00 0.00 3.18
874 887 2.104331 CTTACCGCGGCATCGTCT 59.896 61.111 28.58 6.16 38.89 4.18
968 982 4.922026 GCCGAACCACCACCGTGT 62.922 66.667 0.00 0.00 38.41 4.49
1311 1328 0.034380 AGCAGCATGACAGCCTGAAT 60.034 50.000 0.00 0.00 39.69 2.57
1345 1362 2.360350 CACAACGCCAGCCCTCAT 60.360 61.111 0.00 0.00 0.00 2.90
1470 1487 2.208431 GCATTCTCCACCTTGAGATCG 58.792 52.381 0.00 0.00 40.89 3.69
1473 1490 0.391661 GCGCATTCTCCACCTTGAGA 60.392 55.000 0.30 0.00 39.58 3.27
1519 1536 0.034767 TCCCAAGCTGCTTCCATCTG 60.035 55.000 12.82 0.41 0.00 2.90
1585 1602 7.493367 CCTAGTCTTACAAACCCAGAGATTAG 58.507 42.308 0.00 0.00 0.00 1.73
1857 1874 5.008019 CCCGACAAAAGTATCCATCTTGATG 59.992 44.000 3.77 3.77 0.00 3.07
1948 1965 8.391106 CCAAGTAAATTTATCTCTACTGTGCAC 58.609 37.037 10.75 10.75 0.00 4.57
2007 2024 1.043816 CGATAGCCTCCTCACCATGT 58.956 55.000 0.00 0.00 0.00 3.21
2601 2618 3.667497 ACATCAGGTACATAGCCATCG 57.333 47.619 0.00 0.00 0.00 3.84
2607 2624 4.583489 ACCTCGGTTACATCAGGTACATAG 59.417 45.833 0.00 0.00 37.50 2.23
2806 2823 3.259374 TCCCTCACAACAATCTCTCTCAC 59.741 47.826 0.00 0.00 0.00 3.51
2964 2981 8.286800 CAGTGCATCATTTGAAATGAAAAATGT 58.713 29.630 22.72 4.33 42.06 2.71
3060 3077 9.342308 GATGATCCCAAATGAGAACTTAACATA 57.658 33.333 0.00 0.00 0.00 2.29
3100 3117 5.344743 TTCGGCAACAGAGAAGATTAGAT 57.655 39.130 0.00 0.00 0.00 1.98
3151 3168 6.017852 ACTCACCTTTCTTTTCATCGAACTTC 60.018 38.462 0.00 0.00 0.00 3.01
3154 3171 5.674933 ACTCACCTTTCTTTTCATCGAAC 57.325 39.130 0.00 0.00 0.00 3.95
3158 3175 8.268850 TGCTATAACTCACCTTTCTTTTCATC 57.731 34.615 0.00 0.00 0.00 2.92
3161 3178 8.045176 ACATGCTATAACTCACCTTTCTTTTC 57.955 34.615 0.00 0.00 0.00 2.29
3381 3400 6.560003 AAAGAATTTCCCCACTGAAACTTT 57.440 33.333 0.00 0.00 37.08 2.66
3435 3455 2.164827 GCTGTTGCACCATGATCATCAA 59.835 45.455 4.86 4.33 39.41 2.57
3590 3617 8.211116 TGTTTTGAGTTCATTGCAAATTCAAT 57.789 26.923 1.71 0.00 33.92 2.57
3600 3627 7.651808 AGTAGGTCAATGTTTTGAGTTCATTG 58.348 34.615 9.81 9.81 42.41 2.82
3623 3650 8.950210 CATGGTGAAATAGTCTACAATCAAAGT 58.050 33.333 0.00 0.00 0.00 2.66
3637 3664 7.325660 ACTATGAACAAGCATGGTGAAATAG 57.674 36.000 0.00 5.20 38.36 1.73
3678 3705 8.611757 GGCTGTTTCATAAAATGTTTCAACTTT 58.388 29.630 0.00 0.00 0.00 2.66
3679 3706 7.768120 TGGCTGTTTCATAAAATGTTTCAACTT 59.232 29.630 0.00 0.00 0.00 2.66
3680 3707 7.224557 GTGGCTGTTTCATAAAATGTTTCAACT 59.775 33.333 0.00 0.00 0.00 3.16
3681 3708 7.224557 AGTGGCTGTTTCATAAAATGTTTCAAC 59.775 33.333 0.00 0.00 0.00 3.18
3682 3709 7.271511 AGTGGCTGTTTCATAAAATGTTTCAA 58.728 30.769 0.00 0.00 0.00 2.69
3683 3710 6.815089 AGTGGCTGTTTCATAAAATGTTTCA 58.185 32.000 0.00 0.00 0.00 2.69
3684 3711 7.147976 AGAGTGGCTGTTTCATAAAATGTTTC 58.852 34.615 0.00 0.00 0.00 2.78
3694 3721 8.082242 GTGTTTTAAATAGAGTGGCTGTTTCAT 58.918 33.333 0.00 0.00 38.62 2.57
3697 3724 7.341445 TGTGTTTTAAATAGAGTGGCTGTTT 57.659 32.000 0.00 0.00 40.47 2.83
3730 3757 7.201696 GGTGTGTGAATAACTTATACCATGGTG 60.202 40.741 28.17 13.05 0.00 4.17
3755 3782 0.823460 AACAACAGTGGGCACAAAGG 59.177 50.000 0.00 0.00 0.00 3.11
3768 3795 7.056006 TGATACGGAGGTAGTATCTAACAACA 58.944 38.462 14.78 0.00 46.34 3.33
3779 3806 9.364653 AGTCTTATATTTTGATACGGAGGTAGT 57.635 33.333 0.00 0.00 30.81 2.73
3805 3832 5.291614 GCACTTCAATTTGAACTGCAGAAAA 59.708 36.000 25.81 17.20 42.12 2.29
3809 3836 3.708890 TGCACTTCAATTTGAACTGCAG 58.291 40.909 27.87 13.48 44.90 4.41
3844 3871 4.403432 TGTATTACTCCCTCCGTACCAAAG 59.597 45.833 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.