Multiple sequence alignment - TraesCS3D01G125600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G125600 chr3D 100.000 4317 0 0 1 4317 84012989 84017305 0.000000e+00 7973
1 TraesCS3D01G125600 chr3D 94.192 396 23 0 288 683 213131326 213131721 4.780000e-169 604
2 TraesCS3D01G125600 chr3D 93.878 392 23 1 295 686 340163980 340163590 1.340000e-164 590
3 TraesCS3D01G125600 chr3D 93.878 392 19 1 292 683 324642217 324642603 1.730000e-163 586
4 TraesCS3D01G125600 chr3D 88.772 285 32 0 1510 1794 84014405 84014689 2.470000e-92 350
5 TraesCS3D01G125600 chr3D 88.772 285 32 0 1417 1701 84014498 84014782 2.470000e-92 350
6 TraesCS3D01G125600 chr3B 94.155 3422 154 19 773 4185 132530766 132527382 0.000000e+00 5169
7 TraesCS3D01G125600 chr3B 89.123 285 31 0 1417 1701 132530032 132529748 5.310000e-94 355
8 TraesCS3D01G125600 chr3B 88.772 285 32 0 1510 1794 132530125 132529841 2.470000e-92 350
9 TraesCS3D01G125600 chr3B 84.718 301 20 9 11 295 132531212 132530922 1.180000e-70 278
10 TraesCS3D01G125600 chr3B 88.830 188 21 0 1603 1790 132530125 132529938 9.340000e-57 231
11 TraesCS3D01G125600 chr3B 87.500 96 11 1 1695 1790 132530125 132530031 4.560000e-20 110
12 TraesCS3D01G125600 chr3A 92.563 2743 109 34 1649 4317 100188919 100191640 0.000000e+00 3847
13 TraesCS3D01G125600 chr3A 94.498 927 33 8 692 1607 100187855 100188774 0.000000e+00 1413
14 TraesCS3D01G125600 chr3A 87.407 270 17 7 24 282 100187601 100187864 1.170000e-75 294
15 TraesCS3D01G125600 chr3A 90.426 188 18 0 1603 1790 100188584 100188771 9.270000e-62 248
16 TraesCS3D01G125600 chr3A 89.474 190 20 0 1510 1699 100188584 100188773 1.550000e-59 241
17 TraesCS3D01G125600 chr4D 94.643 392 21 0 292 683 351223060 351223451 3.690000e-170 608
18 TraesCS3D01G125600 chr6D 94.615 390 20 1 297 686 396473581 396473193 1.720000e-168 603
19 TraesCS3D01G125600 chr2D 94.388 392 22 0 295 686 40642140 40641749 1.720000e-168 603
20 TraesCS3D01G125600 chr2D 94.192 396 22 1 288 683 289551139 289551533 1.720000e-168 603
21 TraesCS3D01G125600 chr1D 93.434 396 26 0 288 683 376846206 376846601 4.810000e-164 588
22 TraesCS3D01G125600 chr5A 93.401 394 26 0 290 683 221627259 221627652 6.220000e-163 584


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G125600 chr3D 84012989 84017305 4316 False 2891.000000 7973 92.514667 1 4317 3 chr3D.!!$F3 4316
1 TraesCS3D01G125600 chr3B 132527382 132531212 3830 True 1082.166667 5169 88.849667 11 4185 6 chr3B.!!$R1 4174
2 TraesCS3D01G125600 chr3A 100187601 100191640 4039 False 1208.600000 3847 90.873600 24 4317 5 chr3A.!!$F1 4293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 332 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.0 0.00 0.0 0.00 4.20 F
513 530 0.108709 CCGGCCCATGATGTTGTTTG 60.109 55.0 0.00 0.0 0.00 2.93 F
1423 1486 0.392327 GAAGCAGCTTCTGGGGAGTC 60.392 60.0 25.51 0.0 37.49 3.36 F
1999 2213 0.772124 TGAAGGCTCCAAGTCCCCTT 60.772 55.0 0.00 0.0 40.23 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2213 0.253044 CCAGAGGCCTTCCGATTCAA 59.747 55.000 6.77 0.0 37.47 2.69 R
2372 2587 0.465460 AGAGCGGCAACTTGGAAACA 60.465 50.000 1.45 0.0 39.83 2.83 R
3203 3422 2.159226 GCTCGCACCTCATACTTGTAGT 60.159 50.000 0.00 0.0 0.00 2.73 R
3957 4185 2.407562 AGCAAATCCACCCCAAAAAGT 58.592 42.857 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 8.041829 TGCACAGCAAATAAATTATGCAAAAT 57.958 26.923 0.00 0.00 42.45 1.82
143 146 4.761745 CGTAATTGTATGCTTCACATCGG 58.238 43.478 0.00 0.00 40.38 4.18
144 147 4.318760 CGTAATTGTATGCTTCACATCGGG 60.319 45.833 0.00 0.00 40.38 5.14
159 162 3.751698 ACATCGGGAAACTCAAGCTAAAC 59.248 43.478 0.00 0.00 0.00 2.01
176 179 7.035840 AGCTAAACCATGAATGCTTAGAATG 57.964 36.000 0.00 0.00 29.91 2.67
177 180 6.830324 AGCTAAACCATGAATGCTTAGAATGA 59.170 34.615 0.00 0.00 29.91 2.57
178 181 7.504911 AGCTAAACCATGAATGCTTAGAATGAT 59.495 33.333 0.00 0.00 29.91 2.45
228 245 3.270027 GTCCAATAATTTGCTTTGGCCC 58.730 45.455 0.00 0.00 39.79 5.80
229 246 3.055167 GTCCAATAATTTGCTTTGGCCCT 60.055 43.478 0.00 0.00 39.79 5.19
256 273 2.837031 AAATAGCCCACGCCCACCTG 62.837 60.000 0.00 0.00 34.57 4.00
298 315 3.710209 AAAAGATCAGTGTCTCAGGGG 57.290 47.619 0.00 0.00 0.00 4.79
299 316 1.577736 AAGATCAGTGTCTCAGGGGG 58.422 55.000 0.00 0.00 0.00 5.40
300 317 0.415429 AGATCAGTGTCTCAGGGGGT 59.585 55.000 0.00 0.00 0.00 4.95
301 318 0.539051 GATCAGTGTCTCAGGGGGTG 59.461 60.000 0.00 0.00 0.00 4.61
302 319 0.178891 ATCAGTGTCTCAGGGGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
303 320 0.399949 TCAGTGTCTCAGGGGGTGTT 60.400 55.000 0.00 0.00 0.00 3.32
304 321 0.474184 CAGTGTCTCAGGGGGTGTTT 59.526 55.000 0.00 0.00 0.00 2.83
305 322 0.474184 AGTGTCTCAGGGGGTGTTTG 59.526 55.000 0.00 0.00 0.00 2.93
306 323 0.182775 GTGTCTCAGGGGGTGTTTGT 59.817 55.000 0.00 0.00 0.00 2.83
307 324 0.923358 TGTCTCAGGGGGTGTTTGTT 59.077 50.000 0.00 0.00 0.00 2.83
308 325 1.286553 TGTCTCAGGGGGTGTTTGTTT 59.713 47.619 0.00 0.00 0.00 2.83
311 328 0.631753 TCAGGGGGTGTTTGTTTCCA 59.368 50.000 0.00 0.00 0.00 3.53
312 329 1.039856 CAGGGGGTGTTTGTTTCCAG 58.960 55.000 0.00 0.00 0.00 3.86
314 331 1.118965 GGGGGTGTTTGTTTCCAGGG 61.119 60.000 0.00 0.00 0.00 4.45
315 332 0.105913 GGGGTGTTTGTTTCCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
316 333 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
317 334 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
318 335 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
320 337 3.196901 GGTGTTTGTTTCCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
321 338 4.323180 GGTGTTTGTTTCCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
322 339 4.629634 GTGTTTGTTTCCAGGGACTTTTTG 59.370 41.667 0.00 0.00 34.60 2.44
323 340 4.188462 GTTTGTTTCCAGGGACTTTTTGG 58.812 43.478 0.00 0.00 34.60 3.28
324 341 3.108847 TGTTTCCAGGGACTTTTTGGT 57.891 42.857 0.00 0.00 34.60 3.67
325 342 2.763448 TGTTTCCAGGGACTTTTTGGTG 59.237 45.455 0.00 0.00 34.60 4.17
326 343 2.764010 GTTTCCAGGGACTTTTTGGTGT 59.236 45.455 0.00 0.00 34.60 4.16
327 344 3.955524 TTCCAGGGACTTTTTGGTGTA 57.044 42.857 0.00 0.00 34.60 2.90
328 345 3.502123 TCCAGGGACTTTTTGGTGTAG 57.498 47.619 0.00 0.00 34.60 2.74
329 346 2.107552 TCCAGGGACTTTTTGGTGTAGG 59.892 50.000 0.00 0.00 34.60 3.18
330 347 2.107552 CCAGGGACTTTTTGGTGTAGGA 59.892 50.000 0.00 0.00 34.60 2.94
331 348 3.435890 CCAGGGACTTTTTGGTGTAGGAA 60.436 47.826 0.00 0.00 34.60 3.36
332 349 3.568430 CAGGGACTTTTTGGTGTAGGAAC 59.432 47.826 0.00 0.00 34.60 3.62
333 350 3.462205 AGGGACTTTTTGGTGTAGGAACT 59.538 43.478 0.00 0.00 38.08 3.01
334 351 4.661709 AGGGACTTTTTGGTGTAGGAACTA 59.338 41.667 0.00 0.00 34.75 2.24
335 352 5.001874 GGGACTTTTTGGTGTAGGAACTAG 58.998 45.833 0.00 0.00 44.14 2.57
336 353 5.221783 GGGACTTTTTGGTGTAGGAACTAGA 60.222 44.000 0.00 0.00 44.14 2.43
337 354 6.293698 GGACTTTTTGGTGTAGGAACTAGAA 58.706 40.000 0.00 0.00 44.14 2.10
338 355 6.769341 GGACTTTTTGGTGTAGGAACTAGAAA 59.231 38.462 0.00 0.00 44.14 2.52
339 356 7.283807 GGACTTTTTGGTGTAGGAACTAGAAAA 59.716 37.037 0.00 0.00 44.14 2.29
340 357 8.584063 ACTTTTTGGTGTAGGAACTAGAAAAA 57.416 30.769 0.00 0.00 44.14 1.94
341 358 8.683615 ACTTTTTGGTGTAGGAACTAGAAAAAG 58.316 33.333 0.00 0.00 44.14 2.27
342 359 8.584063 TTTTTGGTGTAGGAACTAGAAAAAGT 57.416 30.769 0.00 0.00 44.14 2.66
343 360 7.797038 TTTGGTGTAGGAACTAGAAAAAGTC 57.203 36.000 0.00 0.00 44.14 3.01
344 361 5.861727 TGGTGTAGGAACTAGAAAAAGTCC 58.138 41.667 0.00 0.00 44.14 3.85
345 362 5.221783 TGGTGTAGGAACTAGAAAAAGTCCC 60.222 44.000 0.00 0.00 44.14 4.46
346 363 5.012871 GGTGTAGGAACTAGAAAAAGTCCCT 59.987 44.000 0.00 0.00 44.14 4.20
347 364 6.465464 GGTGTAGGAACTAGAAAAAGTCCCTT 60.465 42.308 0.00 0.00 44.14 3.95
348 365 6.996879 GTGTAGGAACTAGAAAAAGTCCCTTT 59.003 38.462 0.00 0.00 44.14 3.11
349 366 7.501559 GTGTAGGAACTAGAAAAAGTCCCTTTT 59.498 37.037 0.00 0.00 44.14 2.27
350 367 8.716779 TGTAGGAACTAGAAAAAGTCCCTTTTA 58.283 33.333 0.00 0.00 44.14 1.52
351 368 9.217278 GTAGGAACTAGAAAAAGTCCCTTTTAG 57.783 37.037 0.00 0.60 44.14 1.85
352 369 8.042286 AGGAACTAGAAAAAGTCCCTTTTAGA 57.958 34.615 0.00 0.00 38.90 2.10
353 370 8.158132 AGGAACTAGAAAAAGTCCCTTTTAGAG 58.842 37.037 0.00 3.92 38.90 2.43
354 371 8.155510 GGAACTAGAAAAAGTCCCTTTTAGAGA 58.844 37.037 0.00 0.00 41.98 3.10
355 372 8.905660 AACTAGAAAAAGTCCCTTTTAGAGAC 57.094 34.615 0.00 0.00 41.98 3.36
356 373 8.265108 ACTAGAAAAAGTCCCTTTTAGAGACT 57.735 34.615 0.00 0.00 41.98 3.24
364 381 8.461249 AAGTCCCTTTTAGAGACTTTTTAACC 57.539 34.615 0.00 0.00 46.08 2.85
365 382 7.580007 AGTCCCTTTTAGAGACTTTTTAACCA 58.420 34.615 0.00 0.00 37.60 3.67
366 383 8.057011 AGTCCCTTTTAGAGACTTTTTAACCAA 58.943 33.333 0.00 0.00 37.60 3.67
367 384 8.689061 GTCCCTTTTAGAGACTTTTTAACCAAA 58.311 33.333 0.00 0.00 0.00 3.28
368 385 8.689061 TCCCTTTTAGAGACTTTTTAACCAAAC 58.311 33.333 0.00 0.00 0.00 2.93
369 386 8.471609 CCCTTTTAGAGACTTTTTAACCAAACA 58.528 33.333 0.00 0.00 0.00 2.83
370 387 9.863845 CCTTTTAGAGACTTTTTAACCAAACAA 57.136 29.630 0.00 0.00 0.00 2.83
374 391 7.334844 AGAGACTTTTTAACCAAACAAGAGG 57.665 36.000 0.00 0.00 0.00 3.69
375 392 7.116736 AGAGACTTTTTAACCAAACAAGAGGA 58.883 34.615 0.00 0.00 0.00 3.71
376 393 7.614192 AGAGACTTTTTAACCAAACAAGAGGAA 59.386 33.333 0.00 0.00 0.00 3.36
377 394 7.544622 AGACTTTTTAACCAAACAAGAGGAAC 58.455 34.615 0.00 0.00 0.00 3.62
379 396 8.584063 ACTTTTTAACCAAACAAGAGGAACTA 57.416 30.769 0.00 0.00 41.55 2.24
380 397 8.464404 ACTTTTTAACCAAACAAGAGGAACTAC 58.536 33.333 0.00 0.00 41.55 2.73
381 398 8.584063 TTTTTAACCAAACAAGAGGAACTACT 57.416 30.769 0.00 0.00 41.55 2.57
382 399 9.683870 TTTTTAACCAAACAAGAGGAACTACTA 57.316 29.630 0.00 0.00 41.55 1.82
383 400 8.897872 TTTAACCAAACAAGAGGAACTACTAG 57.102 34.615 0.00 0.00 41.55 2.57
384 401 5.485209 ACCAAACAAGAGGAACTACTAGG 57.515 43.478 0.00 0.00 41.55 3.02
385 402 5.152934 ACCAAACAAGAGGAACTACTAGGA 58.847 41.667 0.00 0.00 41.55 2.94
386 403 5.605488 ACCAAACAAGAGGAACTACTAGGAA 59.395 40.000 0.00 0.00 41.55 3.36
387 404 5.932883 CCAAACAAGAGGAACTACTAGGAAC 59.067 44.000 0.00 0.00 41.55 3.62
388 405 6.239629 CCAAACAAGAGGAACTACTAGGAACT 60.240 42.308 0.00 0.00 41.55 3.01
389 406 7.039223 CCAAACAAGAGGAACTACTAGGAACTA 60.039 40.741 0.00 0.00 41.55 2.24
390 407 8.365647 CAAACAAGAGGAACTACTAGGAACTAA 58.634 37.037 0.00 0.00 39.34 2.24
391 408 8.488308 AACAAGAGGAACTACTAGGAACTAAA 57.512 34.615 0.00 0.00 39.34 1.85
392 409 8.488308 ACAAGAGGAACTACTAGGAACTAAAA 57.512 34.615 0.00 0.00 39.34 1.52
393 410 8.586744 ACAAGAGGAACTACTAGGAACTAAAAG 58.413 37.037 0.00 0.00 39.34 2.27
394 411 8.586744 CAAGAGGAACTACTAGGAACTAAAAGT 58.413 37.037 0.00 0.00 39.34 2.66
395 412 8.724113 AGAGGAACTACTAGGAACTAAAAGTT 57.276 34.615 0.00 0.00 43.87 2.66
396 413 8.586744 AGAGGAACTACTAGGAACTAAAAGTTG 58.413 37.037 0.00 0.00 42.36 3.16
397 414 7.160049 AGGAACTACTAGGAACTAAAAGTTGC 58.840 38.462 3.39 3.39 45.49 4.17
416 433 9.750125 AAAGTTGCTTTTTAGGACTAAATGAAG 57.250 29.630 5.44 8.14 35.27 3.02
417 434 8.691661 AGTTGCTTTTTAGGACTAAATGAAGA 57.308 30.769 15.36 4.00 35.27 2.87
418 435 9.131791 AGTTGCTTTTTAGGACTAAATGAAGAA 57.868 29.630 15.36 6.63 35.27 2.52
419 436 9.399403 GTTGCTTTTTAGGACTAAATGAAGAAG 57.601 33.333 15.36 11.73 35.27 2.85
420 437 8.918202 TGCTTTTTAGGACTAAATGAAGAAGA 57.082 30.769 15.36 2.27 35.27 2.87
421 438 8.784043 TGCTTTTTAGGACTAAATGAAGAAGAC 58.216 33.333 15.36 8.89 35.27 3.01
422 439 9.004717 GCTTTTTAGGACTAAATGAAGAAGACT 57.995 33.333 15.36 0.00 35.27 3.24
425 442 9.930693 TTTTAGGACTAAATGAAGAAGACTCTC 57.069 33.333 5.44 0.00 35.27 3.20
426 443 8.651589 TTAGGACTAAATGAAGAAGACTCTCA 57.348 34.615 0.00 0.00 0.00 3.27
427 444 7.546250 AGGACTAAATGAAGAAGACTCTCAA 57.454 36.000 0.00 0.00 0.00 3.02
428 445 7.610865 AGGACTAAATGAAGAAGACTCTCAAG 58.389 38.462 0.00 0.00 0.00 3.02
429 446 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
430 447 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
431 448 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
432 449 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
462 479 8.757164 TTTTTGAGACTTTTTGAGACTTTTCC 57.243 30.769 0.00 0.00 30.39 3.13
463 480 7.461182 TTTGAGACTTTTTGAGACTTTTCCA 57.539 32.000 0.00 0.00 30.39 3.53
464 481 7.461182 TTGAGACTTTTTGAGACTTTTCCAA 57.539 32.000 0.00 0.00 30.39 3.53
465 482 6.852664 TGAGACTTTTTGAGACTTTTCCAAC 58.147 36.000 0.00 0.00 30.39 3.77
466 483 6.432783 TGAGACTTTTTGAGACTTTTCCAACA 59.567 34.615 0.00 0.00 30.39 3.33
467 484 7.040062 TGAGACTTTTTGAGACTTTTCCAACAA 60.040 33.333 0.00 0.00 30.39 2.83
468 485 7.840931 AGACTTTTTGAGACTTTTCCAACAAT 58.159 30.769 0.00 0.00 0.00 2.71
469 486 7.761249 AGACTTTTTGAGACTTTTCCAACAATG 59.239 33.333 0.00 0.00 0.00 2.82
470 487 6.313658 ACTTTTTGAGACTTTTCCAACAATGC 59.686 34.615 0.00 0.00 0.00 3.56
471 488 4.320608 TTGAGACTTTTCCAACAATGCC 57.679 40.909 0.00 0.00 0.00 4.40
472 489 2.627699 TGAGACTTTTCCAACAATGCCC 59.372 45.455 0.00 0.00 0.00 5.36
473 490 1.970640 AGACTTTTCCAACAATGCCCC 59.029 47.619 0.00 0.00 0.00 5.80
474 491 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
475 492 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
476 493 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
477 494 0.544120 TTTCCAACAATGCCCCTCCC 60.544 55.000 0.00 0.00 0.00 4.30
478 495 1.442886 TTCCAACAATGCCCCTCCCT 61.443 55.000 0.00 0.00 0.00 4.20
479 496 1.683365 CCAACAATGCCCCTCCCTG 60.683 63.158 0.00 0.00 0.00 4.45
480 497 2.037847 AACAATGCCCCTCCCTGC 59.962 61.111 0.00 0.00 0.00 4.85
481 498 2.855770 AACAATGCCCCTCCCTGCA 61.856 57.895 0.00 0.00 42.52 4.41
482 499 2.757099 CAATGCCCCTCCCTGCAC 60.757 66.667 0.00 0.00 40.88 4.57
483 500 4.066139 AATGCCCCTCCCTGCACC 62.066 66.667 0.00 0.00 40.88 5.01
487 504 3.350163 CCCCTCCCTGCACCCATT 61.350 66.667 0.00 0.00 0.00 3.16
488 505 2.043652 CCCTCCCTGCACCCATTG 60.044 66.667 0.00 0.00 0.00 2.82
509 526 3.891400 CGCCGGCCCATGATGTTG 61.891 66.667 23.46 0.00 0.00 3.33
510 527 2.755469 GCCGGCCCATGATGTTGT 60.755 61.111 18.11 0.00 0.00 3.32
511 528 2.350458 GCCGGCCCATGATGTTGTT 61.350 57.895 18.11 0.00 0.00 2.83
512 529 1.887344 GCCGGCCCATGATGTTGTTT 61.887 55.000 18.11 0.00 0.00 2.83
513 530 0.108709 CCGGCCCATGATGTTGTTTG 60.109 55.000 0.00 0.00 0.00 2.93
514 531 0.108709 CGGCCCATGATGTTGTTTGG 60.109 55.000 0.00 0.00 0.00 3.28
515 532 0.975887 GGCCCATGATGTTGTTTGGT 59.024 50.000 0.00 0.00 0.00 3.67
516 533 1.347378 GGCCCATGATGTTGTTTGGTT 59.653 47.619 0.00 0.00 0.00 3.67
517 534 2.415776 GCCCATGATGTTGTTTGGTTG 58.584 47.619 0.00 0.00 0.00 3.77
518 535 2.224257 GCCCATGATGTTGTTTGGTTGT 60.224 45.455 0.00 0.00 0.00 3.32
519 536 3.743899 GCCCATGATGTTGTTTGGTTGTT 60.744 43.478 0.00 0.00 0.00 2.83
520 537 4.502259 GCCCATGATGTTGTTTGGTTGTTA 60.502 41.667 0.00 0.00 0.00 2.41
521 538 5.792741 CCCATGATGTTGTTTGGTTGTTAT 58.207 37.500 0.00 0.00 0.00 1.89
522 539 6.229733 CCCATGATGTTGTTTGGTTGTTATT 58.770 36.000 0.00 0.00 0.00 1.40
523 540 6.709846 CCCATGATGTTGTTTGGTTGTTATTT 59.290 34.615 0.00 0.00 0.00 1.40
524 541 7.228308 CCCATGATGTTGTTTGGTTGTTATTTT 59.772 33.333 0.00 0.00 0.00 1.82
525 542 8.619546 CCATGATGTTGTTTGGTTGTTATTTTT 58.380 29.630 0.00 0.00 0.00 1.94
526 543 9.649024 CATGATGTTGTTTGGTTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
527 544 9.612066 ATGATGTTGTTTGGTTGTTATTTTTCT 57.388 25.926 0.00 0.00 0.00 2.52
528 545 8.877779 TGATGTTGTTTGGTTGTTATTTTTCTG 58.122 29.630 0.00 0.00 0.00 3.02
529 546 8.785329 ATGTTGTTTGGTTGTTATTTTTCTGT 57.215 26.923 0.00 0.00 0.00 3.41
530 547 9.877178 ATGTTGTTTGGTTGTTATTTTTCTGTA 57.123 25.926 0.00 0.00 0.00 2.74
531 548 9.877178 TGTTGTTTGGTTGTTATTTTTCTGTAT 57.123 25.926 0.00 0.00 0.00 2.29
538 555 9.675464 TGGTTGTTATTTTTCTGTATACTAGGG 57.325 33.333 4.17 0.00 0.00 3.53
539 556 9.117183 GGTTGTTATTTTTCTGTATACTAGGGG 57.883 37.037 4.17 0.00 0.00 4.79
540 557 9.676861 GTTGTTATTTTTCTGTATACTAGGGGT 57.323 33.333 4.17 0.00 0.00 4.95
546 563 9.847224 ATTTTTCTGTATACTAGGGGTAACATG 57.153 33.333 4.17 0.00 39.74 3.21
547 564 6.989155 TTCTGTATACTAGGGGTAACATGG 57.011 41.667 4.17 0.00 39.74 3.66
548 565 6.034442 TCTGTATACTAGGGGTAACATGGT 57.966 41.667 4.17 0.00 39.74 3.55
549 566 6.073314 TCTGTATACTAGGGGTAACATGGTC 58.927 44.000 4.17 0.00 39.74 4.02
550 567 5.779636 TGTATACTAGGGGTAACATGGTCA 58.220 41.667 4.17 0.00 39.74 4.02
551 568 6.387127 TGTATACTAGGGGTAACATGGTCAT 58.613 40.000 4.17 0.00 39.74 3.06
552 569 6.847567 TGTATACTAGGGGTAACATGGTCATT 59.152 38.462 4.17 0.00 39.74 2.57
553 570 6.841781 ATACTAGGGGTAACATGGTCATTT 57.158 37.500 0.00 0.00 39.74 2.32
554 571 7.941053 ATACTAGGGGTAACATGGTCATTTA 57.059 36.000 0.00 0.00 39.74 1.40
555 572 6.645884 ACTAGGGGTAACATGGTCATTTAA 57.354 37.500 0.00 0.00 39.74 1.52
556 573 7.220890 ACTAGGGGTAACATGGTCATTTAAT 57.779 36.000 0.00 0.00 39.74 1.40
557 574 8.339720 ACTAGGGGTAACATGGTCATTTAATA 57.660 34.615 0.00 0.00 39.74 0.98
558 575 8.783903 ACTAGGGGTAACATGGTCATTTAATAA 58.216 33.333 0.00 0.00 39.74 1.40
559 576 7.891498 AGGGGTAACATGGTCATTTAATAAC 57.109 36.000 0.00 0.00 39.74 1.89
560 577 6.837048 AGGGGTAACATGGTCATTTAATAACC 59.163 38.462 0.00 0.00 39.74 2.85
561 578 6.837048 GGGGTAACATGGTCATTTAATAACCT 59.163 38.462 0.00 0.00 39.74 3.50
562 579 7.343574 GGGGTAACATGGTCATTTAATAACCTT 59.656 37.037 0.00 0.00 39.74 3.50
563 580 8.410912 GGGTAACATGGTCATTTAATAACCTTC 58.589 37.037 0.00 0.00 39.74 3.46
564 581 8.962679 GGTAACATGGTCATTTAATAACCTTCA 58.037 33.333 0.00 0.00 34.05 3.02
566 583 7.645058 ACATGGTCATTTAATAACCTTCAGG 57.355 36.000 0.00 0.00 42.17 3.86
567 584 6.607198 ACATGGTCATTTAATAACCTTCAGGG 59.393 38.462 0.00 0.00 40.27 4.45
568 585 6.395780 TGGTCATTTAATAACCTTCAGGGA 57.604 37.500 0.00 0.00 40.27 4.20
569 586 6.423182 TGGTCATTTAATAACCTTCAGGGAG 58.577 40.000 0.00 0.00 40.27 4.30
570 587 5.828328 GGTCATTTAATAACCTTCAGGGAGG 59.172 44.000 0.00 0.00 42.75 4.30
571 588 5.828328 GTCATTTAATAACCTTCAGGGAGGG 59.172 44.000 0.00 0.00 41.31 4.30
572 589 5.734140 TCATTTAATAACCTTCAGGGAGGGA 59.266 40.000 1.02 0.00 41.31 4.20
573 590 5.446260 TTTAATAACCTTCAGGGAGGGAC 57.554 43.478 1.02 0.00 41.31 4.46
574 591 2.972153 ATAACCTTCAGGGAGGGACT 57.028 50.000 1.02 0.00 41.31 3.85
575 592 4.363546 AATAACCTTCAGGGAGGGACTA 57.636 45.455 1.02 0.00 41.31 2.59
576 593 2.255770 AACCTTCAGGGAGGGACTAG 57.744 55.000 1.02 0.00 41.31 2.57
577 594 1.394532 ACCTTCAGGGAGGGACTAGA 58.605 55.000 0.00 0.00 41.31 2.43
578 595 1.289530 ACCTTCAGGGAGGGACTAGAG 59.710 57.143 0.00 0.00 41.31 2.43
579 596 1.571457 CCTTCAGGGAGGGACTAGAGA 59.429 57.143 0.00 0.00 41.55 3.10
580 597 2.661718 CTTCAGGGAGGGACTAGAGAC 58.338 57.143 0.00 0.00 41.55 3.36
581 598 1.988539 TCAGGGAGGGACTAGAGACT 58.011 55.000 0.00 0.00 41.55 3.24
582 599 2.289467 TCAGGGAGGGACTAGAGACTT 58.711 52.381 0.00 0.00 41.55 3.01
583 600 2.655407 TCAGGGAGGGACTAGAGACTTT 59.345 50.000 0.00 0.00 41.55 2.66
584 601 3.077695 TCAGGGAGGGACTAGAGACTTTT 59.922 47.826 0.00 0.00 41.55 2.27
585 602 3.841255 CAGGGAGGGACTAGAGACTTTTT 59.159 47.826 0.00 0.00 41.55 1.94
586 603 5.024118 CAGGGAGGGACTAGAGACTTTTTA 58.976 45.833 0.00 0.00 41.55 1.52
587 604 5.128008 CAGGGAGGGACTAGAGACTTTTTAG 59.872 48.000 0.00 0.00 41.55 1.85
588 605 5.024785 GGGAGGGACTAGAGACTTTTTAGT 58.975 45.833 0.00 0.00 41.55 2.24
589 606 5.127519 GGGAGGGACTAGAGACTTTTTAGTC 59.872 48.000 0.00 11.42 41.55 2.59
597 614 9.993454 GACTAGAGACTTTTTAGTCCCTAAAAA 57.007 33.333 16.68 16.68 46.72 1.94
598 615 9.775854 ACTAGAGACTTTTTAGTCCCTAAAAAC 57.224 33.333 14.65 8.75 45.19 2.43
599 616 9.774413 CTAGAGACTTTTTAGTCCCTAAAAACA 57.226 33.333 14.65 1.10 45.19 2.83
601 618 9.470399 AGAGACTTTTTAGTCCCTAAAAACAAA 57.530 29.630 14.65 0.26 45.19 2.83
602 619 9.512435 GAGACTTTTTAGTCCCTAAAAACAAAC 57.488 33.333 14.65 8.65 45.19 2.93
603 620 9.027202 AGACTTTTTAGTCCCTAAAAACAAACA 57.973 29.630 14.65 0.00 45.19 2.83
604 621 9.642327 GACTTTTTAGTCCCTAAAAACAAACAA 57.358 29.630 14.65 0.00 45.19 2.83
605 622 9.647797 ACTTTTTAGTCCCTAAAAACAAACAAG 57.352 29.630 14.65 8.34 45.19 3.16
606 623 9.093970 CTTTTTAGTCCCTAAAAACAAACAAGG 57.906 33.333 14.65 3.51 45.19 3.61
607 624 7.957992 TTTAGTCCCTAAAAACAAACAAGGA 57.042 32.000 0.00 0.00 33.67 3.36
608 625 7.576861 TTAGTCCCTAAAAACAAACAAGGAG 57.423 36.000 0.00 0.00 0.00 3.69
609 626 4.893524 AGTCCCTAAAAACAAACAAGGAGG 59.106 41.667 0.00 0.00 0.00 4.30
610 627 4.038763 GTCCCTAAAAACAAACAAGGAGGG 59.961 45.833 0.00 0.00 43.29 4.30
611 628 4.219919 CCCTAAAAACAAACAAGGAGGGA 58.780 43.478 0.00 0.00 44.48 4.20
612 629 4.038763 CCCTAAAAACAAACAAGGAGGGAC 59.961 45.833 0.00 0.00 44.48 4.46
613 630 6.160801 CCCTAAAAACAAACAAGGAGGGACT 61.161 44.000 0.00 0.00 44.48 3.85
614 631 5.362717 CCTAAAAACAAACAAGGAGGGACTT 59.637 40.000 0.00 0.00 41.55 3.01
615 632 5.755409 AAAAACAAACAAGGAGGGACTTT 57.245 34.783 0.00 0.00 41.55 2.66
616 633 5.755409 AAAACAAACAAGGAGGGACTTTT 57.245 34.783 0.00 0.00 41.55 2.27
617 634 5.755409 AAACAAACAAGGAGGGACTTTTT 57.245 34.783 0.00 0.00 41.55 1.94
618 635 6.860790 AAACAAACAAGGAGGGACTTTTTA 57.139 33.333 0.00 0.00 41.55 1.52
619 636 6.465439 AACAAACAAGGAGGGACTTTTTAG 57.535 37.500 0.00 0.00 41.55 1.85
620 637 4.893524 ACAAACAAGGAGGGACTTTTTAGG 59.106 41.667 0.00 0.00 41.55 2.69
621 638 5.137551 CAAACAAGGAGGGACTTTTTAGGA 58.862 41.667 0.00 0.00 41.55 2.94
622 639 5.397553 AACAAGGAGGGACTTTTTAGGAA 57.602 39.130 0.00 0.00 41.55 3.36
623 640 5.600669 ACAAGGAGGGACTTTTTAGGAAT 57.399 39.130 0.00 0.00 41.55 3.01
624 641 5.965486 ACAAGGAGGGACTTTTTAGGAATT 58.035 37.500 0.00 0.00 41.55 2.17
625 642 7.098845 ACAAGGAGGGACTTTTTAGGAATTA 57.901 36.000 0.00 0.00 41.55 1.40
626 643 7.175797 ACAAGGAGGGACTTTTTAGGAATTAG 58.824 38.462 0.00 0.00 41.55 1.73
627 644 6.328782 AGGAGGGACTTTTTAGGAATTAGG 57.671 41.667 0.00 0.00 41.55 2.69
628 645 5.193930 AGGAGGGACTTTTTAGGAATTAGGG 59.806 44.000 0.00 0.00 41.55 3.53
629 646 5.193124 GGAGGGACTTTTTAGGAATTAGGGA 59.807 44.000 0.00 0.00 41.55 4.20
630 647 6.075949 AGGGACTTTTTAGGAATTAGGGAC 57.924 41.667 0.00 0.00 27.25 4.46
631 648 5.796399 AGGGACTTTTTAGGAATTAGGGACT 59.204 40.000 0.00 0.00 38.08 3.85
632 649 6.277283 AGGGACTTTTTAGGAATTAGGGACTT 59.723 38.462 0.00 0.00 34.75 3.01
633 650 6.952358 GGGACTTTTTAGGAATTAGGGACTTT 59.048 38.462 0.00 0.00 41.75 2.66
634 651 7.453752 GGGACTTTTTAGGAATTAGGGACTTTT 59.546 37.037 0.00 0.00 41.75 2.27
635 652 8.867097 GGACTTTTTAGGAATTAGGGACTTTTT 58.133 33.333 0.00 0.00 41.75 1.94
641 658 8.873186 TTAGGAATTAGGGACTTTTTAGTTGG 57.127 34.615 0.00 0.00 41.75 3.77
642 659 6.253758 AGGAATTAGGGACTTTTTAGTTGGG 58.746 40.000 0.00 0.00 41.75 4.12
643 660 6.046286 AGGAATTAGGGACTTTTTAGTTGGGA 59.954 38.462 0.00 0.00 41.75 4.37
644 661 6.152323 GGAATTAGGGACTTTTTAGTTGGGAC 59.848 42.308 0.00 0.00 41.75 4.46
645 662 5.917545 TTAGGGACTTTTTAGTTGGGACT 57.082 39.130 0.00 0.00 41.75 3.85
646 663 7.578458 ATTAGGGACTTTTTAGTTGGGACTA 57.422 36.000 0.00 0.00 41.75 2.59
647 664 5.500546 AGGGACTTTTTAGTTGGGACTAG 57.499 43.478 0.00 0.00 35.67 2.57
648 665 5.160386 AGGGACTTTTTAGTTGGGACTAGA 58.840 41.667 0.00 0.00 35.67 2.43
649 666 5.609708 AGGGACTTTTTAGTTGGGACTAGAA 59.390 40.000 0.00 0.00 35.67 2.10
650 667 6.102174 AGGGACTTTTTAGTTGGGACTAGAAA 59.898 38.462 0.00 3.34 39.04 2.52
651 668 6.774170 GGGACTTTTTAGTTGGGACTAGAAAA 59.226 38.462 0.00 5.68 40.10 2.29
652 669 7.286087 GGGACTTTTTAGTTGGGACTAGAAAAA 59.714 37.037 0.00 0.00 40.10 1.94
653 670 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
654 671 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
656 673 9.731819 CTTTTTAGTTGGGACTAGAAAAAGTTC 57.268 33.333 13.78 0.00 41.32 3.01
657 674 9.470399 TTTTTAGTTGGGACTAGAAAAAGTTCT 57.530 29.630 0.00 0.00 46.18 3.01
660 677 9.774413 TTAGTTGGGACTAGAAAAAGTTCTAAG 57.226 33.333 0.00 0.00 44.05 2.18
661 678 8.030913 AGTTGGGACTAGAAAAAGTTCTAAGA 57.969 34.615 0.00 0.00 44.05 2.10
662 679 7.932491 AGTTGGGACTAGAAAAAGTTCTAAGAC 59.068 37.037 0.00 0.00 44.05 3.01
663 680 7.613551 TGGGACTAGAAAAAGTTCTAAGACT 57.386 36.000 0.00 0.00 44.05 3.24
664 681 8.030913 TGGGACTAGAAAAAGTTCTAAGACTT 57.969 34.615 0.00 0.00 44.05 3.01
665 682 9.151177 TGGGACTAGAAAAAGTTCTAAGACTTA 57.849 33.333 0.00 0.00 44.05 2.24
672 689 9.847224 AGAAAAAGTTCTAAGACTTATGAACCA 57.153 29.630 21.38 0.00 42.53 3.67
676 693 8.974060 AAGTTCTAAGACTTATGAACCAAACA 57.026 30.769 21.38 0.00 38.06 2.83
677 694 8.608844 AGTTCTAAGACTTATGAACCAAACAG 57.391 34.615 21.38 2.14 39.45 3.16
678 695 7.661847 AGTTCTAAGACTTATGAACCAAACAGG 59.338 37.037 21.38 0.00 45.67 4.00
679 696 6.472887 TCTAAGACTTATGAACCAAACAGGG 58.527 40.000 0.00 0.00 43.89 4.45
680 697 3.421844 AGACTTATGAACCAAACAGGGC 58.578 45.455 0.00 0.00 43.89 5.19
681 698 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
682 699 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
721 738 2.158385 AGACCACCCAAGTGCCATAAAA 60.158 45.455 0.00 0.00 43.09 1.52
727 744 3.456277 ACCCAAGTGCCATAAAACCAAAA 59.544 39.130 0.00 0.00 0.00 2.44
728 745 4.103943 ACCCAAGTGCCATAAAACCAAAAT 59.896 37.500 0.00 0.00 0.00 1.82
729 746 5.308237 ACCCAAGTGCCATAAAACCAAAATA 59.692 36.000 0.00 0.00 0.00 1.40
730 747 5.874261 CCCAAGTGCCATAAAACCAAAATAG 59.126 40.000 0.00 0.00 0.00 1.73
731 748 5.874261 CCAAGTGCCATAAAACCAAAATAGG 59.126 40.000 0.00 0.00 0.00 2.57
733 750 6.530019 AGTGCCATAAAACCAAAATAGGAG 57.470 37.500 0.00 0.00 0.00 3.69
945 1008 2.583593 GCCGCACTCCTAGCTTCG 60.584 66.667 0.00 0.00 0.00 3.79
1376 1439 4.719369 GCTCGTGAACGCCGACCT 62.719 66.667 0.00 0.00 39.60 3.85
1422 1485 1.682257 GAAGCAGCTTCTGGGGAGT 59.318 57.895 25.51 0.00 37.49 3.85
1423 1486 0.392327 GAAGCAGCTTCTGGGGAGTC 60.392 60.000 25.51 0.00 37.49 3.36
1434 1497 1.075600 GGGGAGTCTGGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
1455 1518 6.158344 AGGAGATGAAGAAAGATGAGGTGATT 59.842 38.462 0.00 0.00 0.00 2.57
1458 1521 5.152623 TGAAGAAAGATGAGGTGATTCGT 57.847 39.130 0.00 0.00 0.00 3.85
1481 1544 1.001248 TCGAAAGGGAGATCGGGGT 59.999 57.895 0.00 0.00 39.45 4.95
1642 1705 6.827762 GGAAATGAAGAAAGATGAGGTGATCT 59.172 38.462 0.00 0.00 33.91 2.75
1739 1905 4.808414 AGAAAGATGAGGTGATTCGTCA 57.192 40.909 0.00 0.00 43.54 4.35
1872 2038 5.727791 GCAGAATAAATTCAATCACGCGACT 60.728 40.000 15.93 0.00 39.23 4.18
1999 2213 0.772124 TGAAGGCTCCAAGTCCCCTT 60.772 55.000 0.00 0.00 40.23 3.95
2004 2218 1.272704 GGCTCCAAGTCCCCTTTGAAT 60.273 52.381 0.00 0.00 0.00 2.57
2065 2279 2.179377 AGGTACCGCCCCATAACTTA 57.821 50.000 6.18 0.00 38.26 2.24
2133 2347 8.248945 TGTTCCTGTATTACTGCTAGACTTTAC 58.751 37.037 0.00 0.00 0.00 2.01
2151 2365 9.751542 AGACTTTACGAACAATATAAGGATCTG 57.248 33.333 0.00 0.00 0.00 2.90
2195 2409 9.358406 TGATCAATGATGCATTATAAAGAAGGT 57.642 29.630 4.14 0.00 32.35 3.50
2196 2410 9.837525 GATCAATGATGCATTATAAAGAAGGTC 57.162 33.333 4.14 0.00 32.35 3.85
2197 2411 8.169977 TCAATGATGCATTATAAAGAAGGTCC 57.830 34.615 4.14 0.00 32.35 4.46
2198 2412 7.231317 TCAATGATGCATTATAAAGAAGGTCCC 59.769 37.037 4.14 0.00 32.35 4.46
2199 2413 6.266131 TGATGCATTATAAAGAAGGTCCCT 57.734 37.500 0.00 0.00 0.00 4.20
2200 2414 7.387265 TGATGCATTATAAAGAAGGTCCCTA 57.613 36.000 0.00 0.00 0.00 3.53
2201 2415 7.988937 TGATGCATTATAAAGAAGGTCCCTAT 58.011 34.615 0.00 0.00 0.00 2.57
2202 2416 9.111519 TGATGCATTATAAAGAAGGTCCCTATA 57.888 33.333 0.00 0.00 0.00 1.31
2203 2417 9.959721 GATGCATTATAAAGAAGGTCCCTATAA 57.040 33.333 0.00 0.00 0.00 0.98
2236 2450 5.947228 TTTGCCAGTATCTCTTTTCTGTG 57.053 39.130 0.00 0.00 0.00 3.66
2270 2484 6.960992 CACATAACATGGACGTGTCTTAAATG 59.039 38.462 0.00 2.86 33.60 2.32
2363 2578 9.384764 GCTACTTGAGTTTTCTTATCCAGTATT 57.615 33.333 0.00 0.00 0.00 1.89
2381 2596 8.410141 TCCAGTATTACACTTTTTGTTTCCAAG 58.590 33.333 0.00 0.00 39.91 3.61
2443 2659 9.190858 TGTACTTTTTGTGCAAATATGATCAAC 57.809 29.630 0.00 0.00 38.31 3.18
2483 2701 9.317936 CTGATAAATGTCAGTTTGCTAGTATCA 57.682 33.333 0.00 0.00 40.54 2.15
2553 2772 5.776173 AGGAGTTACTGATTCCGTATCTG 57.224 43.478 0.00 0.00 39.07 2.90
2557 2776 7.175293 AGGAGTTACTGATTCCGTATCTGTATC 59.825 40.741 12.20 11.61 43.16 2.24
2931 3150 4.220821 CCCTACAACTAGAGAAGAAGCACA 59.779 45.833 0.00 0.00 0.00 4.57
3203 3422 2.634600 GCCGTGTAAATGGTGATGGTA 58.365 47.619 0.00 0.00 0.00 3.25
3376 3595 6.051717 GTGTATTGTCACAGCATAGATCCTT 58.948 40.000 0.00 0.00 38.12 3.36
3447 3666 5.064707 ACATACACGTCATCATTAAGGTTGC 59.935 40.000 0.00 0.00 0.00 4.17
3630 3851 1.691196 TTGTTGCCCCTGAGAAACAG 58.309 50.000 0.00 0.00 45.36 3.16
3657 3878 6.377146 TCAAAATAACATGGAAGGAAGCTACC 59.623 38.462 0.00 0.00 0.00 3.18
3674 3895 3.364664 GCTACCGAACCTTTTACAGTTGC 60.365 47.826 0.00 0.00 0.00 4.17
3702 3923 0.111061 TCATGGCCTGTTGCTTCTGT 59.889 50.000 3.32 0.00 40.92 3.41
3708 3929 2.360801 GGCCTGTTGCTTCTGTTGTTTA 59.639 45.455 0.00 0.00 40.92 2.01
3710 3931 3.066760 GCCTGTTGCTTCTGTTGTTTACT 59.933 43.478 0.00 0.00 36.87 2.24
3711 3932 4.274950 GCCTGTTGCTTCTGTTGTTTACTA 59.725 41.667 0.00 0.00 36.87 1.82
3720 3941 9.502091 TGCTTCTGTTGTTTACTATTACTTCAT 57.498 29.630 0.00 0.00 0.00 2.57
3810 4038 5.346181 AGCAAACTCAGGATCTACTTACC 57.654 43.478 0.00 0.00 0.00 2.85
3848 4076 8.836413 CAGAGAGTTTGTGTTTGGAGTTTTATA 58.164 33.333 0.00 0.00 0.00 0.98
3856 4084 6.877322 TGTGTTTGGAGTTTTATAGAGTAGGC 59.123 38.462 0.00 0.00 0.00 3.93
3903 4131 9.098355 GATTTCACAATGTTACTAGTATCAGCA 57.902 33.333 16.62 8.85 0.00 4.41
3944 4172 4.634004 TGTAGCCATCTTGTGTAAAATCCG 59.366 41.667 0.00 0.00 0.00 4.18
3945 4173 3.950397 AGCCATCTTGTGTAAAATCCGA 58.050 40.909 0.00 0.00 0.00 4.55
3947 4175 4.949856 AGCCATCTTGTGTAAAATCCGATT 59.050 37.500 0.00 0.00 0.00 3.34
3948 4176 5.418840 AGCCATCTTGTGTAAAATCCGATTT 59.581 36.000 0.17 0.17 0.00 2.17
3957 4185 8.568676 TGTGTAAAATCCGATTTAGAATGGAA 57.431 30.769 6.79 0.00 33.48 3.53
4013 4242 2.250924 CCCTTTCCAGCTTGTCCATTT 58.749 47.619 0.00 0.00 0.00 2.32
4026 4255 4.916041 TGTCCATTTGATCCTGAGACTT 57.084 40.909 0.00 0.00 0.00 3.01
4027 4256 4.582869 TGTCCATTTGATCCTGAGACTTG 58.417 43.478 0.00 0.00 0.00 3.16
4067 4304 0.687920 TAACTCGGGTGGTTGCATCA 59.312 50.000 0.00 0.00 0.00 3.07
4118 4359 3.149196 GAGTCTGGTTGCTCAATTTCCA 58.851 45.455 0.00 0.00 0.00 3.53
4135 4376 1.349627 CATGTGCTTCATCGACGCC 59.650 57.895 0.00 0.00 34.09 5.68
4144 4385 2.279582 TCATCGACGCCTCTTTCTTC 57.720 50.000 0.00 0.00 0.00 2.87
4161 4402 2.094494 TCTTCTCCACGCACTCATCTTC 60.094 50.000 0.00 0.00 0.00 2.87
4191 4432 8.458573 TTTTCTCAGCTGTTTCCTATTTTGTA 57.541 30.769 14.67 0.00 0.00 2.41
4207 4448 5.437289 TTTTGTAGTCTTGATTGCTGGTG 57.563 39.130 0.00 0.00 0.00 4.17
4208 4449 4.350368 TTGTAGTCTTGATTGCTGGTGA 57.650 40.909 0.00 0.00 0.00 4.02
4209 4450 3.664107 TGTAGTCTTGATTGCTGGTGAC 58.336 45.455 0.00 0.00 0.00 3.67
4210 4451 3.324846 TGTAGTCTTGATTGCTGGTGACT 59.675 43.478 0.00 0.00 38.21 3.41
4211 4452 2.775890 AGTCTTGATTGCTGGTGACTG 58.224 47.619 0.00 0.00 34.09 3.51
4212 4453 1.808945 GTCTTGATTGCTGGTGACTGG 59.191 52.381 0.00 0.00 0.00 4.00
4213 4454 1.171308 CTTGATTGCTGGTGACTGGG 58.829 55.000 0.00 0.00 0.00 4.45
4214 4455 0.478072 TTGATTGCTGGTGACTGGGT 59.522 50.000 0.00 0.00 0.00 4.51
4227 4468 4.020839 GGTGACTGGGTAACTGCTAAGTAA 60.021 45.833 0.00 0.00 34.77 2.24
4229 4470 5.638234 GTGACTGGGTAACTGCTAAGTAAAG 59.362 44.000 0.00 0.00 34.77 1.85
4242 4483 2.998316 AGTAAAGATGGCCTGCTCTC 57.002 50.000 3.32 0.00 0.00 3.20
4275 4516 5.827797 TCTTCTTCTGCTATTGGTGTTGTTT 59.172 36.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.731819 CGGCGTATGAATAACTATTATGTCTAT 57.268 33.333 0.00 0.00 0.00 1.98
98 99 5.567534 CGCGTTTCTACAACTAATTTTGCAT 59.432 36.000 0.00 0.00 0.00 3.96
106 107 6.768029 ACAATTACGCGTTTCTACAACTAA 57.232 33.333 20.78 0.62 0.00 2.24
119 122 3.649870 TGTGAAGCATACAATTACGCG 57.350 42.857 3.53 3.53 0.00 6.01
143 146 5.705609 TTCATGGTTTAGCTTGAGTTTCC 57.294 39.130 0.00 0.00 0.00 3.13
144 147 5.574443 GCATTCATGGTTTAGCTTGAGTTTC 59.426 40.000 0.00 0.00 0.00 2.78
159 162 9.976511 ATGTTTTATCATTCTAAGCATTCATGG 57.023 29.630 0.00 0.00 0.00 3.66
228 245 2.555199 CGTGGGCTATTTTGGAGAGAG 58.445 52.381 0.00 0.00 0.00 3.20
229 246 1.406887 GCGTGGGCTATTTTGGAGAGA 60.407 52.381 0.00 0.00 35.83 3.10
284 301 0.399949 AACACCCCCTGAGACACTGA 60.400 55.000 0.00 0.00 0.00 3.41
295 312 1.118965 CCCTGGAAACAAACACCCCC 61.119 60.000 0.00 0.00 42.06 5.40
296 313 0.105913 TCCCTGGAAACAAACACCCC 60.106 55.000 0.00 0.00 42.06 4.95
297 314 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
298 315 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
299 316 4.465632 AAAAGTCCCTGGAAACAAACAC 57.534 40.909 0.00 0.00 42.06 3.32
300 317 4.323104 CCAAAAAGTCCCTGGAAACAAACA 60.323 41.667 0.00 0.00 42.06 2.83
301 318 4.188462 CCAAAAAGTCCCTGGAAACAAAC 58.812 43.478 0.00 0.00 42.06 2.93
302 319 3.841255 ACCAAAAAGTCCCTGGAAACAAA 59.159 39.130 0.00 0.00 42.06 2.83
303 320 3.196685 CACCAAAAAGTCCCTGGAAACAA 59.803 43.478 0.00 0.00 42.06 2.83
304 321 2.763448 CACCAAAAAGTCCCTGGAAACA 59.237 45.455 0.00 0.00 39.59 2.83
305 322 2.764010 ACACCAAAAAGTCCCTGGAAAC 59.236 45.455 0.00 0.00 34.16 2.78
306 323 3.108847 ACACCAAAAAGTCCCTGGAAA 57.891 42.857 0.00 0.00 34.16 3.13
307 324 2.838637 ACACCAAAAAGTCCCTGGAA 57.161 45.000 0.00 0.00 34.16 3.53
308 325 2.107552 CCTACACCAAAAAGTCCCTGGA 59.892 50.000 0.00 0.00 34.16 3.86
311 328 3.462205 AGTTCCTACACCAAAAAGTCCCT 59.538 43.478 0.00 0.00 0.00 4.20
312 329 3.828921 AGTTCCTACACCAAAAAGTCCC 58.171 45.455 0.00 0.00 0.00 4.46
314 331 7.797038 TTTCTAGTTCCTACACCAAAAAGTC 57.203 36.000 0.00 0.00 0.00 3.01
315 332 8.584063 TTTTTCTAGTTCCTACACCAAAAAGT 57.416 30.769 0.00 0.00 0.00 2.66
316 333 8.683615 ACTTTTTCTAGTTCCTACACCAAAAAG 58.316 33.333 13.11 13.11 38.89 2.27
317 334 8.584063 ACTTTTTCTAGTTCCTACACCAAAAA 57.416 30.769 0.00 0.00 0.00 1.94
318 335 7.283807 GGACTTTTTCTAGTTCCTACACCAAAA 59.716 37.037 0.00 0.00 0.00 2.44
320 337 6.293698 GGACTTTTTCTAGTTCCTACACCAA 58.706 40.000 0.00 0.00 0.00 3.67
321 338 5.221783 GGGACTTTTTCTAGTTCCTACACCA 60.222 44.000 0.00 0.00 40.21 4.17
322 339 5.243981 GGGACTTTTTCTAGTTCCTACACC 58.756 45.833 0.00 0.00 40.21 4.16
341 358 7.812690 TGGTTAAAAAGTCTCTAAAAGGGAC 57.187 36.000 0.00 0.00 0.00 4.46
342 359 8.689061 GTTTGGTTAAAAAGTCTCTAAAAGGGA 58.311 33.333 0.00 0.00 0.00 4.20
343 360 8.471609 TGTTTGGTTAAAAAGTCTCTAAAAGGG 58.528 33.333 0.00 0.00 0.00 3.95
344 361 9.863845 TTGTTTGGTTAAAAAGTCTCTAAAAGG 57.136 29.630 0.00 0.00 0.00 3.11
348 365 8.899771 CCTCTTGTTTGGTTAAAAAGTCTCTAA 58.100 33.333 0.00 0.00 0.00 2.10
349 366 8.269317 TCCTCTTGTTTGGTTAAAAAGTCTCTA 58.731 33.333 0.00 0.00 0.00 2.43
350 367 7.116736 TCCTCTTGTTTGGTTAAAAAGTCTCT 58.883 34.615 0.00 0.00 0.00 3.10
351 368 7.329588 TCCTCTTGTTTGGTTAAAAAGTCTC 57.670 36.000 0.00 0.00 0.00 3.36
352 369 7.396339 AGTTCCTCTTGTTTGGTTAAAAAGTCT 59.604 33.333 0.00 0.00 0.00 3.24
353 370 7.544622 AGTTCCTCTTGTTTGGTTAAAAAGTC 58.455 34.615 0.00 0.00 0.00 3.01
354 371 7.476540 AGTTCCTCTTGTTTGGTTAAAAAGT 57.523 32.000 0.00 0.00 0.00 2.66
355 372 8.683615 AGTAGTTCCTCTTGTTTGGTTAAAAAG 58.316 33.333 0.00 0.00 0.00 2.27
356 373 8.584063 AGTAGTTCCTCTTGTTTGGTTAAAAA 57.416 30.769 0.00 0.00 0.00 1.94
357 374 9.333724 CTAGTAGTTCCTCTTGTTTGGTTAAAA 57.666 33.333 0.00 0.00 0.00 1.52
358 375 7.935210 CCTAGTAGTTCCTCTTGTTTGGTTAAA 59.065 37.037 0.00 0.00 0.00 1.52
359 376 7.290714 TCCTAGTAGTTCCTCTTGTTTGGTTAA 59.709 37.037 0.00 0.00 0.00 2.01
360 377 6.783977 TCCTAGTAGTTCCTCTTGTTTGGTTA 59.216 38.462 0.00 0.00 0.00 2.85
361 378 5.605488 TCCTAGTAGTTCCTCTTGTTTGGTT 59.395 40.000 0.00 0.00 0.00 3.67
362 379 5.152934 TCCTAGTAGTTCCTCTTGTTTGGT 58.847 41.667 0.00 0.00 0.00 3.67
363 380 5.740290 TCCTAGTAGTTCCTCTTGTTTGG 57.260 43.478 0.00 0.00 0.00 3.28
364 381 6.760291 AGTTCCTAGTAGTTCCTCTTGTTTG 58.240 40.000 0.00 0.00 0.00 2.93
365 382 6.997942 AGTTCCTAGTAGTTCCTCTTGTTT 57.002 37.500 0.00 0.00 0.00 2.83
366 383 8.488308 TTTAGTTCCTAGTAGTTCCTCTTGTT 57.512 34.615 0.00 0.00 0.00 2.83
367 384 8.488308 TTTTAGTTCCTAGTAGTTCCTCTTGT 57.512 34.615 0.00 0.00 0.00 3.16
368 385 8.586744 ACTTTTAGTTCCTAGTAGTTCCTCTTG 58.413 37.037 0.00 0.00 0.00 3.02
369 386 8.724113 ACTTTTAGTTCCTAGTAGTTCCTCTT 57.276 34.615 0.00 0.00 0.00 2.85
370 387 8.586744 CAACTTTTAGTTCCTAGTAGTTCCTCT 58.413 37.037 0.00 0.00 36.03 3.69
371 388 7.331440 GCAACTTTTAGTTCCTAGTAGTTCCTC 59.669 40.741 0.00 0.00 36.03 3.71
372 389 7.016366 AGCAACTTTTAGTTCCTAGTAGTTCCT 59.984 37.037 0.00 0.00 36.03 3.36
373 390 7.160049 AGCAACTTTTAGTTCCTAGTAGTTCC 58.840 38.462 0.00 0.00 36.03 3.62
374 391 8.604640 AAGCAACTTTTAGTTCCTAGTAGTTC 57.395 34.615 0.00 0.00 36.03 3.01
375 392 8.975663 AAAGCAACTTTTAGTTCCTAGTAGTT 57.024 30.769 0.00 0.00 36.03 2.24
376 393 8.975663 AAAAGCAACTTTTAGTTCCTAGTAGT 57.024 30.769 3.57 0.00 41.17 2.73
379 396 8.847196 CCTAAAAAGCAACTTTTAGTTCCTAGT 58.153 33.333 17.43 0.00 41.98 2.57
380 397 9.063615 TCCTAAAAAGCAACTTTTAGTTCCTAG 57.936 33.333 17.43 3.71 41.98 3.02
381 398 8.843262 GTCCTAAAAAGCAACTTTTAGTTCCTA 58.157 33.333 17.43 0.00 41.98 2.94
382 399 7.560262 AGTCCTAAAAAGCAACTTTTAGTTCCT 59.440 33.333 17.43 10.81 41.98 3.36
383 400 7.713750 AGTCCTAAAAAGCAACTTTTAGTTCC 58.286 34.615 17.43 9.50 41.98 3.62
390 407 9.750125 CTTCATTTAGTCCTAAAAAGCAACTTT 57.250 29.630 3.78 0.00 38.38 2.66
391 408 9.131791 TCTTCATTTAGTCCTAAAAAGCAACTT 57.868 29.630 3.78 0.00 38.38 2.66
392 409 8.691661 TCTTCATTTAGTCCTAAAAAGCAACT 57.308 30.769 3.78 0.00 38.38 3.16
393 410 9.399403 CTTCTTCATTTAGTCCTAAAAAGCAAC 57.601 33.333 3.78 0.00 38.38 4.17
394 411 9.349713 TCTTCTTCATTTAGTCCTAAAAAGCAA 57.650 29.630 3.78 2.07 38.38 3.91
395 412 8.784043 GTCTTCTTCATTTAGTCCTAAAAAGCA 58.216 33.333 3.78 0.00 38.38 3.91
396 413 9.004717 AGTCTTCTTCATTTAGTCCTAAAAAGC 57.995 33.333 3.78 1.36 38.38 3.51
399 416 9.930693 GAGAGTCTTCTTCATTTAGTCCTAAAA 57.069 33.333 3.78 0.00 34.83 1.52
400 417 9.090103 TGAGAGTCTTCTTCATTTAGTCCTAAA 57.910 33.333 0.00 2.21 35.26 1.85
401 418 8.651589 TGAGAGTCTTCTTCATTTAGTCCTAA 57.348 34.615 0.00 0.00 32.53 2.69
402 419 8.651589 TTGAGAGTCTTCTTCATTTAGTCCTA 57.348 34.615 0.00 0.00 32.53 2.94
403 420 7.310361 CCTTGAGAGTCTTCTTCATTTAGTCCT 60.310 40.741 0.00 0.00 32.53 3.85
404 421 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
405 422 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
406 423 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
407 424 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
408 425 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
409 426 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
437 454 8.364142 TGGAAAAGTCTCAAAAAGTCTCAAAAA 58.636 29.630 0.00 0.00 0.00 1.94
438 455 7.891561 TGGAAAAGTCTCAAAAAGTCTCAAAA 58.108 30.769 0.00 0.00 0.00 2.44
439 456 7.461182 TGGAAAAGTCTCAAAAAGTCTCAAA 57.539 32.000 0.00 0.00 0.00 2.69
440 457 7.040062 TGTTGGAAAAGTCTCAAAAAGTCTCAA 60.040 33.333 0.00 0.00 0.00 3.02
441 458 6.432783 TGTTGGAAAAGTCTCAAAAAGTCTCA 59.567 34.615 0.00 0.00 0.00 3.27
442 459 6.852664 TGTTGGAAAAGTCTCAAAAAGTCTC 58.147 36.000 0.00 0.00 0.00 3.36
443 460 6.834168 TGTTGGAAAAGTCTCAAAAAGTCT 57.166 33.333 0.00 0.00 0.00 3.24
444 461 7.464577 GCATTGTTGGAAAAGTCTCAAAAAGTC 60.465 37.037 0.00 0.00 0.00 3.01
445 462 6.313658 GCATTGTTGGAAAAGTCTCAAAAAGT 59.686 34.615 0.00 0.00 0.00 2.66
446 463 6.238184 GGCATTGTTGGAAAAGTCTCAAAAAG 60.238 38.462 0.00 0.00 0.00 2.27
447 464 5.584251 GGCATTGTTGGAAAAGTCTCAAAAA 59.416 36.000 0.00 0.00 0.00 1.94
448 465 5.115480 GGCATTGTTGGAAAAGTCTCAAAA 58.885 37.500 0.00 0.00 0.00 2.44
449 466 4.442753 GGGCATTGTTGGAAAAGTCTCAAA 60.443 41.667 0.00 0.00 0.00 2.69
450 467 3.069443 GGGCATTGTTGGAAAAGTCTCAA 59.931 43.478 0.00 0.00 0.00 3.02
451 468 2.627699 GGGCATTGTTGGAAAAGTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
452 469 2.029020 GGGGCATTGTTGGAAAAGTCTC 60.029 50.000 0.00 0.00 0.00 3.36
453 470 1.970640 GGGGCATTGTTGGAAAAGTCT 59.029 47.619 0.00 0.00 0.00 3.24
454 471 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
455 472 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
456 473 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
457 474 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
458 475 0.544120 GGGAGGGGCATTGTTGGAAA 60.544 55.000 0.00 0.00 0.00 3.13
459 476 1.078347 GGGAGGGGCATTGTTGGAA 59.922 57.895 0.00 0.00 0.00 3.53
460 477 1.856873 AGGGAGGGGCATTGTTGGA 60.857 57.895 0.00 0.00 0.00 3.53
461 478 1.683365 CAGGGAGGGGCATTGTTGG 60.683 63.158 0.00 0.00 0.00 3.77
462 479 2.353610 GCAGGGAGGGGCATTGTTG 61.354 63.158 0.00 0.00 0.00 3.33
463 480 2.037847 GCAGGGAGGGGCATTGTT 59.962 61.111 0.00 0.00 0.00 2.83
464 481 3.267233 TGCAGGGAGGGGCATTGT 61.267 61.111 0.00 0.00 34.58 2.71
465 482 2.757099 GTGCAGGGAGGGGCATTG 60.757 66.667 0.00 0.00 42.75 2.82
466 483 4.066139 GGTGCAGGGAGGGGCATT 62.066 66.667 0.00 0.00 42.75 3.56
470 487 3.350163 AATGGGTGCAGGGAGGGG 61.350 66.667 0.00 0.00 0.00 4.79
471 488 2.043652 CAATGGGTGCAGGGAGGG 60.044 66.667 0.00 0.00 0.00 4.30
492 509 3.891400 CAACATCATGGGCCGGCG 61.891 66.667 22.54 6.52 0.00 6.46
493 510 1.887344 AAACAACATCATGGGCCGGC 61.887 55.000 21.18 21.18 0.00 6.13
494 511 0.108709 CAAACAACATCATGGGCCGG 60.109 55.000 0.00 0.00 0.00 6.13
495 512 0.108709 CCAAACAACATCATGGGCCG 60.109 55.000 0.00 0.00 0.00 6.13
496 513 0.975887 ACCAAACAACATCATGGGCC 59.024 50.000 0.00 0.00 37.26 5.80
497 514 2.224257 ACAACCAAACAACATCATGGGC 60.224 45.455 0.00 0.00 37.26 5.36
498 515 3.749665 ACAACCAAACAACATCATGGG 57.250 42.857 0.00 0.00 37.26 4.00
499 516 7.727331 AAATAACAACCAAACAACATCATGG 57.273 32.000 0.00 0.00 38.91 3.66
500 517 9.649024 GAAAAATAACAACCAAACAACATCATG 57.351 29.630 0.00 0.00 0.00 3.07
501 518 9.612066 AGAAAAATAACAACCAAACAACATCAT 57.388 25.926 0.00 0.00 0.00 2.45
502 519 8.877779 CAGAAAAATAACAACCAAACAACATCA 58.122 29.630 0.00 0.00 0.00 3.07
503 520 8.878769 ACAGAAAAATAACAACCAAACAACATC 58.121 29.630 0.00 0.00 0.00 3.06
504 521 8.785329 ACAGAAAAATAACAACCAAACAACAT 57.215 26.923 0.00 0.00 0.00 2.71
505 522 9.877178 ATACAGAAAAATAACAACCAAACAACA 57.123 25.926 0.00 0.00 0.00 3.33
512 529 9.675464 CCCTAGTATACAGAAAAATAACAACCA 57.325 33.333 5.50 0.00 0.00 3.67
513 530 9.117183 CCCCTAGTATACAGAAAAATAACAACC 57.883 37.037 5.50 0.00 0.00 3.77
514 531 9.676861 ACCCCTAGTATACAGAAAAATAACAAC 57.323 33.333 5.50 0.00 0.00 3.32
520 537 9.847224 CATGTTACCCCTAGTATACAGAAAAAT 57.153 33.333 5.50 0.00 30.65 1.82
521 538 8.269317 CCATGTTACCCCTAGTATACAGAAAAA 58.731 37.037 5.50 0.00 30.65 1.94
522 539 7.403813 ACCATGTTACCCCTAGTATACAGAAAA 59.596 37.037 5.50 0.00 30.65 2.29
523 540 6.904654 ACCATGTTACCCCTAGTATACAGAAA 59.095 38.462 5.50 0.00 30.65 2.52
524 541 6.446451 ACCATGTTACCCCTAGTATACAGAA 58.554 40.000 5.50 0.00 30.65 3.02
525 542 6.034442 ACCATGTTACCCCTAGTATACAGA 57.966 41.667 5.50 0.00 30.65 3.41
526 543 5.836898 TGACCATGTTACCCCTAGTATACAG 59.163 44.000 5.50 0.84 30.65 2.74
527 544 5.779636 TGACCATGTTACCCCTAGTATACA 58.220 41.667 5.50 0.00 0.00 2.29
528 545 6.930068 ATGACCATGTTACCCCTAGTATAC 57.070 41.667 0.00 0.00 0.00 1.47
529 546 7.941053 AAATGACCATGTTACCCCTAGTATA 57.059 36.000 0.00 0.00 0.00 1.47
530 547 6.841781 AAATGACCATGTTACCCCTAGTAT 57.158 37.500 0.00 0.00 0.00 2.12
531 548 7.752518 TTAAATGACCATGTTACCCCTAGTA 57.247 36.000 0.00 0.00 0.00 1.82
532 549 6.645884 TTAAATGACCATGTTACCCCTAGT 57.354 37.500 0.00 0.00 0.00 2.57
533 550 9.063615 GTTATTAAATGACCATGTTACCCCTAG 57.936 37.037 0.00 0.00 0.00 3.02
534 551 8.000127 GGTTATTAAATGACCATGTTACCCCTA 59.000 37.037 0.00 0.00 38.68 3.53
535 552 6.837048 GGTTATTAAATGACCATGTTACCCCT 59.163 38.462 0.00 0.00 38.68 4.79
536 553 6.837048 AGGTTATTAAATGACCATGTTACCCC 59.163 38.462 6.26 0.00 41.10 4.95
537 554 7.891498 AGGTTATTAAATGACCATGTTACCC 57.109 36.000 6.26 0.00 41.10 3.69
538 555 8.962679 TGAAGGTTATTAAATGACCATGTTACC 58.037 33.333 6.26 0.00 41.10 2.85
540 557 9.184523 CCTGAAGGTTATTAAATGACCATGTTA 57.815 33.333 6.26 0.00 41.10 2.41
541 558 7.124147 CCCTGAAGGTTATTAAATGACCATGTT 59.876 37.037 6.26 0.00 41.10 2.71
542 559 6.607198 CCCTGAAGGTTATTAAATGACCATGT 59.393 38.462 6.26 0.00 41.10 3.21
543 560 6.833416 TCCCTGAAGGTTATTAAATGACCATG 59.167 38.462 6.26 0.00 41.10 3.66
544 561 6.980577 TCCCTGAAGGTTATTAAATGACCAT 58.019 36.000 6.26 0.00 41.10 3.55
545 562 6.395780 TCCCTGAAGGTTATTAAATGACCA 57.604 37.500 6.26 0.00 41.10 4.02
546 563 5.828328 CCTCCCTGAAGGTTATTAAATGACC 59.172 44.000 0.00 0.00 39.09 4.02
547 564 5.828328 CCCTCCCTGAAGGTTATTAAATGAC 59.172 44.000 0.00 0.00 36.75 3.06
548 565 5.734140 TCCCTCCCTGAAGGTTATTAAATGA 59.266 40.000 0.00 0.00 36.75 2.57
549 566 5.828328 GTCCCTCCCTGAAGGTTATTAAATG 59.172 44.000 0.00 0.00 36.75 2.32
550 567 5.736616 AGTCCCTCCCTGAAGGTTATTAAAT 59.263 40.000 0.00 0.00 36.75 1.40
551 568 5.105853 AGTCCCTCCCTGAAGGTTATTAAA 58.894 41.667 0.00 0.00 36.75 1.52
552 569 4.706616 AGTCCCTCCCTGAAGGTTATTAA 58.293 43.478 0.00 0.00 36.75 1.40
553 570 4.363546 AGTCCCTCCCTGAAGGTTATTA 57.636 45.455 0.00 0.00 36.75 0.98
554 571 3.222394 AGTCCCTCCCTGAAGGTTATT 57.778 47.619 0.00 0.00 36.75 1.40
555 572 2.972153 AGTCCCTCCCTGAAGGTTAT 57.028 50.000 0.00 0.00 36.75 1.89
556 573 2.931088 TCTAGTCCCTCCCTGAAGGTTA 59.069 50.000 0.00 0.00 36.75 2.85
557 574 1.722851 TCTAGTCCCTCCCTGAAGGTT 59.277 52.381 0.00 0.00 36.75 3.50
558 575 1.289530 CTCTAGTCCCTCCCTGAAGGT 59.710 57.143 0.00 0.00 36.75 3.50
559 576 1.571457 TCTCTAGTCCCTCCCTGAAGG 59.429 57.143 0.00 0.00 36.08 3.46
560 577 2.243736 AGTCTCTAGTCCCTCCCTGAAG 59.756 54.545 0.00 0.00 0.00 3.02
561 578 2.289467 AGTCTCTAGTCCCTCCCTGAA 58.711 52.381 0.00 0.00 0.00 3.02
562 579 1.988539 AGTCTCTAGTCCCTCCCTGA 58.011 55.000 0.00 0.00 0.00 3.86
563 580 2.838637 AAGTCTCTAGTCCCTCCCTG 57.161 55.000 0.00 0.00 0.00 4.45
564 581 3.856747 AAAAGTCTCTAGTCCCTCCCT 57.143 47.619 0.00 0.00 0.00 4.20
565 582 5.024785 ACTAAAAAGTCTCTAGTCCCTCCC 58.975 45.833 0.00 0.00 0.00 4.30
566 583 6.211587 GACTAAAAAGTCTCTAGTCCCTCC 57.788 45.833 0.00 0.00 36.91 4.30
585 602 6.066032 CCTCCTTGTTTGTTTTTAGGGACTA 58.934 40.000 0.00 0.00 41.75 2.59
586 603 4.893524 CCTCCTTGTTTGTTTTTAGGGACT 59.106 41.667 0.00 0.00 46.37 3.85
587 604 4.038763 CCCTCCTTGTTTGTTTTTAGGGAC 59.961 45.833 0.00 0.00 44.39 4.46
588 605 4.219919 CCCTCCTTGTTTGTTTTTAGGGA 58.780 43.478 0.00 0.00 44.39 4.20
589 606 4.038763 GTCCCTCCTTGTTTGTTTTTAGGG 59.961 45.833 0.00 0.00 43.23 3.53
590 607 4.893524 AGTCCCTCCTTGTTTGTTTTTAGG 59.106 41.667 0.00 0.00 0.00 2.69
591 608 6.465439 AAGTCCCTCCTTGTTTGTTTTTAG 57.535 37.500 0.00 0.00 0.00 1.85
592 609 6.860790 AAAGTCCCTCCTTGTTTGTTTTTA 57.139 33.333 0.00 0.00 0.00 1.52
593 610 5.755409 AAAGTCCCTCCTTGTTTGTTTTT 57.245 34.783 0.00 0.00 0.00 1.94
594 611 5.755409 AAAAGTCCCTCCTTGTTTGTTTT 57.245 34.783 0.00 0.00 0.00 2.43
595 612 5.755409 AAAAAGTCCCTCCTTGTTTGTTT 57.245 34.783 0.00 0.00 0.00 2.83
596 613 5.362717 CCTAAAAAGTCCCTCCTTGTTTGTT 59.637 40.000 0.00 0.00 0.00 2.83
597 614 4.893524 CCTAAAAAGTCCCTCCTTGTTTGT 59.106 41.667 0.00 0.00 0.00 2.83
598 615 5.137551 TCCTAAAAAGTCCCTCCTTGTTTG 58.862 41.667 0.00 0.00 0.00 2.93
599 616 5.397553 TCCTAAAAAGTCCCTCCTTGTTT 57.602 39.130 0.00 0.00 0.00 2.83
600 617 5.397553 TTCCTAAAAAGTCCCTCCTTGTT 57.602 39.130 0.00 0.00 0.00 2.83
601 618 5.600669 ATTCCTAAAAAGTCCCTCCTTGT 57.399 39.130 0.00 0.00 0.00 3.16
602 619 6.603599 CCTAATTCCTAAAAAGTCCCTCCTTG 59.396 42.308 0.00 0.00 0.00 3.61
603 620 6.297653 CCCTAATTCCTAAAAAGTCCCTCCTT 60.298 42.308 0.00 0.00 0.00 3.36
604 621 5.193930 CCCTAATTCCTAAAAAGTCCCTCCT 59.806 44.000 0.00 0.00 0.00 3.69
605 622 5.193124 TCCCTAATTCCTAAAAAGTCCCTCC 59.807 44.000 0.00 0.00 0.00 4.30
606 623 6.069556 AGTCCCTAATTCCTAAAAAGTCCCTC 60.070 42.308 0.00 0.00 0.00 4.30
607 624 5.796399 AGTCCCTAATTCCTAAAAAGTCCCT 59.204 40.000 0.00 0.00 0.00 4.20
608 625 6.075949 AGTCCCTAATTCCTAAAAAGTCCC 57.924 41.667 0.00 0.00 0.00 4.46
609 626 8.418597 AAAAGTCCCTAATTCCTAAAAAGTCC 57.581 34.615 0.00 0.00 0.00 3.85
615 632 9.304335 CCAACTAAAAAGTCCCTAATTCCTAAA 57.696 33.333 0.00 0.00 0.00 1.85
616 633 7.891712 CCCAACTAAAAAGTCCCTAATTCCTAA 59.108 37.037 0.00 0.00 0.00 2.69
617 634 7.240194 TCCCAACTAAAAAGTCCCTAATTCCTA 59.760 37.037 0.00 0.00 0.00 2.94
618 635 6.046286 TCCCAACTAAAAAGTCCCTAATTCCT 59.954 38.462 0.00 0.00 0.00 3.36
619 636 6.152323 GTCCCAACTAAAAAGTCCCTAATTCC 59.848 42.308 0.00 0.00 0.00 3.01
620 637 6.946583 AGTCCCAACTAAAAAGTCCCTAATTC 59.053 38.462 0.00 0.00 32.59 2.17
621 638 6.860034 AGTCCCAACTAAAAAGTCCCTAATT 58.140 36.000 0.00 0.00 32.59 1.40
622 639 6.464530 AGTCCCAACTAAAAAGTCCCTAAT 57.535 37.500 0.00 0.00 32.59 1.73
623 640 5.917545 AGTCCCAACTAAAAAGTCCCTAA 57.082 39.130 0.00 0.00 32.59 2.69
624 641 6.325352 TCTAGTCCCAACTAAAAAGTCCCTA 58.675 40.000 0.00 0.00 37.53 3.53
625 642 5.160386 TCTAGTCCCAACTAAAAAGTCCCT 58.840 41.667 0.00 0.00 37.53 4.20
626 643 5.494390 TCTAGTCCCAACTAAAAAGTCCC 57.506 43.478 0.00 0.00 37.53 4.46
627 644 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
629 646 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
630 647 9.731819 GAACTTTTTCTAGTCCCAACTAAAAAG 57.268 33.333 16.94 16.94 45.72 2.27
631 648 9.470399 AGAACTTTTTCTAGTCCCAACTAAAAA 57.530 29.630 0.00 0.00 40.54 1.94
634 651 9.774413 CTTAGAACTTTTTCTAGTCCCAACTAA 57.226 33.333 0.00 0.00 43.72 2.24
635 652 9.151177 TCTTAGAACTTTTTCTAGTCCCAACTA 57.849 33.333 0.00 0.00 43.72 2.24
636 653 7.932491 GTCTTAGAACTTTTTCTAGTCCCAACT 59.068 37.037 0.00 0.00 43.72 3.16
637 654 7.932491 AGTCTTAGAACTTTTTCTAGTCCCAAC 59.068 37.037 0.00 0.00 43.72 3.77
638 655 8.030913 AGTCTTAGAACTTTTTCTAGTCCCAA 57.969 34.615 0.00 0.00 43.72 4.12
639 656 7.613551 AGTCTTAGAACTTTTTCTAGTCCCA 57.386 36.000 0.00 0.00 43.72 4.37
646 663 9.847224 TGGTTCATAAGTCTTAGAACTTTTTCT 57.153 29.630 21.42 0.00 44.70 2.52
650 667 9.403583 TGTTTGGTTCATAAGTCTTAGAACTTT 57.596 29.630 21.42 0.00 40.01 2.66
651 668 8.974060 TGTTTGGTTCATAAGTCTTAGAACTT 57.026 30.769 21.42 6.79 42.10 2.66
652 669 7.661847 CCTGTTTGGTTCATAAGTCTTAGAACT 59.338 37.037 21.42 0.00 40.05 3.01
653 670 7.094762 CCCTGTTTGGTTCATAAGTCTTAGAAC 60.095 40.741 17.71 17.71 39.59 3.01
654 671 6.940298 CCCTGTTTGGTTCATAAGTCTTAGAA 59.060 38.462 0.00 0.54 0.00 2.10
655 672 6.472887 CCCTGTTTGGTTCATAAGTCTTAGA 58.527 40.000 0.00 0.00 0.00 2.10
656 673 5.123979 GCCCTGTTTGGTTCATAAGTCTTAG 59.876 44.000 0.00 0.00 0.00 2.18
657 674 5.007682 GCCCTGTTTGGTTCATAAGTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
658 675 3.826729 GCCCTGTTTGGTTCATAAGTCTT 59.173 43.478 0.00 0.00 0.00 3.01
659 676 3.421844 GCCCTGTTTGGTTCATAAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
660 677 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
661 678 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
662 679 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
663 680 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
664 681 4.390129 TTTAGGCCCTGTTTGGTTCATA 57.610 40.909 0.00 0.00 0.00 2.15
665 682 2.990740 TTAGGCCCTGTTTGGTTCAT 57.009 45.000 0.00 0.00 0.00 2.57
666 683 2.757894 TTTAGGCCCTGTTTGGTTCA 57.242 45.000 0.00 0.00 0.00 3.18
721 738 5.726793 ACCAGAGATGTACTCCTATTTTGGT 59.273 40.000 0.00 0.00 45.96 3.67
727 744 5.396057 AGTGACCAGAGATGTACTCCTAT 57.604 43.478 0.00 0.00 45.96 2.57
728 745 4.864483 AGTGACCAGAGATGTACTCCTA 57.136 45.455 0.00 0.00 45.96 2.94
729 746 3.748645 AGTGACCAGAGATGTACTCCT 57.251 47.619 0.00 0.00 45.96 3.69
730 747 4.382147 GGAAAGTGACCAGAGATGTACTCC 60.382 50.000 0.00 0.00 45.96 3.85
731 748 4.220821 TGGAAAGTGACCAGAGATGTACTC 59.779 45.833 0.00 0.00 45.22 2.59
733 750 4.537135 TGGAAAGTGACCAGAGATGTAC 57.463 45.455 0.00 0.00 33.22 2.90
780 833 4.153475 AGAGCGCGCTTTTTCAAAACTATA 59.847 37.500 36.87 0.00 0.00 1.31
846 909 1.678724 GGTTAGGGTTGGTGGCGTA 59.321 57.895 0.00 0.00 0.00 4.42
927 990 2.579201 GAAGCTAGGAGTGCGGCA 59.421 61.111 0.00 0.00 35.28 5.69
996 1059 2.418083 CGCCTTGCCCTCCATTTCC 61.418 63.158 0.00 0.00 0.00 3.13
1267 1330 2.583520 CTCCTCCAGCTGGCTCAC 59.416 66.667 28.91 0.00 34.44 3.51
1422 1485 3.765432 TTCTTCATCTCCTCCTCCAGA 57.235 47.619 0.00 0.00 0.00 3.86
1423 1486 4.029520 TCTTTCTTCATCTCCTCCTCCAG 58.970 47.826 0.00 0.00 0.00 3.86
1434 1497 5.814705 ACGAATCACCTCATCTTTCTTCATC 59.185 40.000 0.00 0.00 0.00 2.92
1455 1518 2.674033 TCCCTTTCGAGCCGACGA 60.674 61.111 0.00 0.00 40.55 4.20
1458 1521 1.725557 CGATCTCCCTTTCGAGCCGA 61.726 60.000 0.00 0.00 37.55 5.54
1481 1544 3.370209 CCTTGACATCTCAGCATCCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
1642 1705 4.082523 CTCCCTTTCGAGCCGGCA 62.083 66.667 31.54 4.59 0.00 5.69
1739 1905 1.484240 CCCCAATCTCTCTTTCGAGCT 59.516 52.381 0.00 0.00 37.19 4.09
1872 2038 6.591448 CAGACTTGAGATGCTTGTATTGTGTA 59.409 38.462 0.00 0.00 0.00 2.90
1999 2213 0.253044 CCAGAGGCCTTCCGATTCAA 59.747 55.000 6.77 0.00 37.47 2.69
2004 2218 1.229209 ACTTCCAGAGGCCTTCCGA 60.229 57.895 6.77 0.00 37.47 4.55
2188 2402 5.193728 TGGCATTCTTTATAGGGACCTTCTT 59.806 40.000 0.00 0.00 0.00 2.52
2189 2403 4.726825 TGGCATTCTTTATAGGGACCTTCT 59.273 41.667 0.00 0.00 0.00 2.85
2190 2404 5.048846 TGGCATTCTTTATAGGGACCTTC 57.951 43.478 0.00 0.00 0.00 3.46
2191 2405 5.466127 TTGGCATTCTTTATAGGGACCTT 57.534 39.130 0.00 0.00 0.00 3.50
2192 2406 5.669798 ATTGGCATTCTTTATAGGGACCT 57.330 39.130 0.00 0.00 0.00 3.85
2193 2407 6.515832 CAAATTGGCATTCTTTATAGGGACC 58.484 40.000 0.00 0.00 0.00 4.46
2194 2408 5.985530 GCAAATTGGCATTCTTTATAGGGAC 59.014 40.000 0.00 0.00 0.00 4.46
2195 2409 5.070313 GGCAAATTGGCATTCTTTATAGGGA 59.930 40.000 14.91 0.00 43.14 4.20
2196 2410 5.299949 GGCAAATTGGCATTCTTTATAGGG 58.700 41.667 14.91 0.00 43.14 3.53
2236 2450 4.449068 CGTCCATGTTATGTGCTAGGATTC 59.551 45.833 0.00 0.00 0.00 2.52
2372 2587 0.465460 AGAGCGGCAACTTGGAAACA 60.465 50.000 1.45 0.00 39.83 2.83
2381 2596 6.364945 AGATTCTTAAATTAGAGCGGCAAC 57.635 37.500 1.45 0.00 0.00 4.17
2443 2659 7.334171 TGACATTTATCAGGATATAATGCACCG 59.666 37.037 15.88 0.00 32.01 4.94
2483 2701 6.013379 TCAGGTGATAGGATTGACAGAAAAGT 60.013 38.462 0.00 0.00 0.00 2.66
2897 3116 5.338632 TCTAGTTGTAGGGTTCCTGATCAA 58.661 41.667 0.00 0.00 34.61 2.57
2898 3117 4.942944 TCTAGTTGTAGGGTTCCTGATCA 58.057 43.478 0.00 0.00 34.61 2.92
3203 3422 2.159226 GCTCGCACCTCATACTTGTAGT 60.159 50.000 0.00 0.00 0.00 2.73
3447 3666 6.347969 CCACAAACTGACACTGTAATGATCAG 60.348 42.308 0.09 0.00 42.07 2.90
3630 3851 6.691508 AGCTTCCTTCCATGTTATTTTGAAC 58.308 36.000 0.00 0.00 0.00 3.18
3674 3895 3.928375 GCAACAGGCCATGAATTTAAGTG 59.072 43.478 5.01 0.00 36.11 3.16
3810 4038 6.652481 ACACAAACTCTCTGATCCAATAACAG 59.348 38.462 0.00 0.00 0.00 3.16
3848 4076 4.385825 TGTTTCACAAATTCGCCTACTCT 58.614 39.130 0.00 0.00 0.00 3.24
3944 4172 6.873605 CACCCCAAAAAGTTCCATTCTAAATC 59.126 38.462 0.00 0.00 0.00 2.17
3945 4173 6.239858 CCACCCCAAAAAGTTCCATTCTAAAT 60.240 38.462 0.00 0.00 0.00 1.40
3947 4175 4.591072 CCACCCCAAAAAGTTCCATTCTAA 59.409 41.667 0.00 0.00 0.00 2.10
3948 4176 4.140900 TCCACCCCAAAAAGTTCCATTCTA 60.141 41.667 0.00 0.00 0.00 2.10
3954 4182 3.738982 CAAATCCACCCCAAAAAGTTCC 58.261 45.455 0.00 0.00 0.00 3.62
3957 4185 2.407562 AGCAAATCCACCCCAAAAAGT 58.592 42.857 0.00 0.00 0.00 2.66
4013 4242 2.619931 TGGAACCAAGTCTCAGGATCA 58.380 47.619 0.00 0.00 0.00 2.92
4026 4255 3.593442 AACTGTCCTGAATTGGAACCA 57.407 42.857 0.00 0.00 37.93 3.67
4027 4256 4.937201 AAAACTGTCCTGAATTGGAACC 57.063 40.909 0.00 0.00 37.93 3.62
4097 4334 3.149196 TGGAAATTGAGCAACCAGACTC 58.851 45.455 0.00 0.00 0.00 3.36
4098 4335 3.228188 TGGAAATTGAGCAACCAGACT 57.772 42.857 0.00 0.00 0.00 3.24
4099 4336 3.256631 ACATGGAAATTGAGCAACCAGAC 59.743 43.478 0.00 0.00 34.08 3.51
4106 4347 2.892215 TGAAGCACATGGAAATTGAGCA 59.108 40.909 0.00 0.00 33.77 4.26
4107 4348 3.581024 TGAAGCACATGGAAATTGAGC 57.419 42.857 0.00 0.00 0.00 4.26
4118 4359 0.807667 GAGGCGTCGATGAAGCACAT 60.808 55.000 9.31 0.00 38.70 3.21
4135 4376 2.288457 TGAGTGCGTGGAGAAGAAAGAG 60.288 50.000 0.00 0.00 0.00 2.85
4144 4385 0.171231 TCGAAGATGAGTGCGTGGAG 59.829 55.000 0.00 0.00 0.00 3.86
4161 4402 7.721286 ATAGGAAACAGCTGAGAAAATATCG 57.279 36.000 23.35 0.00 0.00 2.92
4191 4432 2.551721 CCAGTCACCAGCAATCAAGACT 60.552 50.000 0.00 0.00 36.84 3.24
4207 4448 6.034161 TCTTTACTTAGCAGTTACCCAGTC 57.966 41.667 0.00 0.00 34.06 3.51
4208 4449 6.407202 CATCTTTACTTAGCAGTTACCCAGT 58.593 40.000 0.00 0.00 34.06 4.00
4209 4450 5.817816 CCATCTTTACTTAGCAGTTACCCAG 59.182 44.000 0.00 0.00 34.06 4.45
4210 4451 5.741011 CCATCTTTACTTAGCAGTTACCCA 58.259 41.667 0.00 0.00 34.06 4.51
4211 4452 4.575236 GCCATCTTTACTTAGCAGTTACCC 59.425 45.833 0.00 0.00 34.06 3.69
4212 4453 4.575236 GGCCATCTTTACTTAGCAGTTACC 59.425 45.833 0.00 0.00 34.06 2.85
4213 4454 5.294552 CAGGCCATCTTTACTTAGCAGTTAC 59.705 44.000 5.01 0.00 34.06 2.50
4214 4455 5.428253 CAGGCCATCTTTACTTAGCAGTTA 58.572 41.667 5.01 0.00 34.06 2.24
4227 4468 0.106335 CATCGAGAGCAGGCCATCTT 59.894 55.000 5.01 0.00 0.00 2.40
4229 4470 1.960250 GCATCGAGAGCAGGCCATC 60.960 63.158 5.01 0.00 0.00 3.51
4242 4483 2.823984 AGCAGAAGAAGAGATGCATCG 58.176 47.619 20.67 4.68 41.14 3.84
4275 4516 5.895636 TCTTCTGCAAAGACACAAGAAAA 57.104 34.783 7.09 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.