Multiple sequence alignment - TraesCS3D01G125400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G125400 chr3D 100.000 5178 0 0 1 5178 83915435 83920612 0.000000e+00 9563.0
1 TraesCS3D01G125400 chr3D 92.237 219 7 4 1 214 480421075 480420862 8.430000e-78 302.0
2 TraesCS3D01G125400 chr3D 91.534 189 16 0 4979 5167 83940060 83940248 1.430000e-65 261.0
3 TraesCS3D01G125400 chr3A 91.923 4816 252 65 414 5178 100010939 100015668 0.000000e+00 6612.0
4 TraesCS3D01G125400 chr3A 86.921 367 28 10 993 1359 243662405 243662751 1.350000e-105 394.0
5 TraesCS3D01G125400 chr3A 82.828 198 27 6 4834 5030 40842814 40842623 2.480000e-38 171.0
6 TraesCS3D01G125400 chr3B 92.996 3384 158 27 1829 5178 132629011 132625673 0.000000e+00 4863.0
7 TraesCS3D01G125400 chr3B 92.213 2440 150 17 1833 4247 131518213 131515789 0.000000e+00 3417.0
8 TraesCS3D01G125400 chr3B 90.378 873 48 21 901 1742 132629875 132629008 0.000000e+00 1114.0
9 TraesCS3D01G125400 chr3B 89.593 884 59 15 904 1777 131519071 131518211 0.000000e+00 1092.0
10 TraesCS3D01G125400 chr3B 91.783 718 37 9 4466 5178 131515592 131514892 0.000000e+00 979.0
11 TraesCS3D01G125400 chr3B 84.085 377 34 19 427 781 132630242 132629870 1.790000e-89 340.0
12 TraesCS3D01G125400 chr3B 91.837 49 4 0 860 908 131521571 131521523 9.300000e-08 69.4
13 TraesCS3D01G125400 chr2B 88.253 664 56 14 1561 2217 73147924 73147276 0.000000e+00 774.0
14 TraesCS3D01G125400 chr2B 87.817 197 16 5 1154 1349 73149397 73149208 1.880000e-54 224.0
15 TraesCS3D01G125400 chr6A 84.866 522 50 17 1395 1897 571222713 571222202 2.780000e-137 499.0
16 TraesCS3D01G125400 chr6A 91.000 100 4 3 1217 1316 154348798 154348892 4.210000e-26 130.0
17 TraesCS3D01G125400 chr4A 84.866 522 50 17 1395 1897 10028565 10028054 2.780000e-137 499.0
18 TraesCS3D01G125400 chr4A 84.971 519 44 20 1395 1894 703784462 703784965 3.600000e-136 496.0
19 TraesCS3D01G125400 chr4A 95.146 103 5 0 1395 1497 727041057 727041159 4.150000e-36 163.0
20 TraesCS3D01G125400 chr1B 84.200 519 53 17 1395 1894 562247646 562248154 1.300000e-130 477.0
21 TraesCS3D01G125400 chr1B 80.914 372 56 6 1724 2092 198561913 198562272 3.950000e-71 279.0
22 TraesCS3D01G125400 chr1B 89.130 92 10 0 1331 1422 76550354 76550263 1.180000e-21 115.0
23 TraesCS3D01G125400 chr1A 83.525 522 53 20 1395 1897 417204690 417204183 1.700000e-124 457.0
24 TraesCS3D01G125400 chr7A 85.946 370 30 9 996 1365 623777167 623776820 4.900000e-100 375.0
25 TraesCS3D01G125400 chr2A 85.946 370 31 12 996 1365 606238603 606238255 4.900000e-100 375.0
26 TraesCS3D01G125400 chr5A 94.811 212 11 0 1 212 523664217 523664428 1.070000e-86 331.0
27 TraesCS3D01G125400 chr5A 91.743 218 12 2 1 213 611674306 611674090 1.090000e-76 298.0
28 TraesCS3D01G125400 chr2D 86.139 303 38 2 1793 2092 628886239 628886540 1.800000e-84 324.0
29 TraesCS3D01G125400 chr2D 83.065 372 47 7 1724 2092 628886647 628887005 1.800000e-84 324.0
30 TraesCS3D01G125400 chr2D 82.828 198 27 6 4834 5030 575973939 575974130 2.480000e-38 171.0
31 TraesCS3D01G125400 chr1D 93.396 212 9 1 1 212 393035078 393035284 5.040000e-80 309.0
32 TraesCS3D01G125400 chr1D 91.703 229 6 8 1 223 188464305 188464526 6.510000e-79 305.0
33 TraesCS3D01G125400 chr1D 83.838 198 24 7 4834 5030 452252614 452252804 1.150000e-41 182.0
34 TraesCS3D01G125400 chr5D 91.928 223 13 1 1 223 477961017 477960800 1.810000e-79 307.0
35 TraesCS3D01G125400 chr5D 91.892 222 8 4 1 212 124568906 124569127 8.430000e-78 302.0
36 TraesCS3D01G125400 chr5D 86.364 198 20 6 4834 5030 9074171 9073980 5.250000e-50 209.0
37 TraesCS3D01G125400 chr4D 92.694 219 6 2 1 214 113170286 113170499 1.810000e-79 307.0
38 TraesCS3D01G125400 chr7D 92.273 220 7 4 1 215 161430573 161430787 2.340000e-78 303.0
39 TraesCS3D01G125400 chr7D 86.700 203 23 2 4877 5078 101575476 101575277 6.750000e-54 222.0
40 TraesCS3D01G125400 chr7D 85.859 198 21 6 4834 5030 83321961 83321770 2.440000e-48 204.0
41 TraesCS3D01G125400 chr7B 92.818 181 9 2 992 1172 74047679 74047855 5.140000e-65 259.0
42 TraesCS3D01G125400 chr7B 92.090 177 10 2 996 1172 74053946 74053774 4.000000e-61 246.0
43 TraesCS3D01G125400 chr7B 90.960 177 12 4 996 1172 657584472 657584300 8.670000e-58 235.0
44 TraesCS3D01G125400 chr7B 92.233 103 8 0 1395 1497 660137411 660137513 4.180000e-31 147.0
45 TraesCS3D01G125400 chr7B 85.294 68 8 2 5015 5081 126162095 126162161 9.300000e-08 69.4
46 TraesCS3D01G125400 chr7B 86.441 59 6 2 5024 5081 126192873 126192816 4.330000e-06 63.9
47 TraesCS3D01G125400 chr5B 92.090 177 10 2 996 1172 538080628 538080456 4.000000e-61 246.0
48 TraesCS3D01G125400 chr4B 91.000 100 4 4 1217 1316 134407221 134407315 4.210000e-26 130.0
49 TraesCS3D01G125400 chr6D 85.417 96 10 4 1992 2087 33783230 33783139 4.270000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G125400 chr3D 83915435 83920612 5177 False 9563.000000 9563 100.0000 1 5178 1 chr3D.!!$F1 5177
1 TraesCS3D01G125400 chr3A 100010939 100015668 4729 False 6612.000000 6612 91.9230 414 5178 1 chr3A.!!$F1 4764
2 TraesCS3D01G125400 chr3B 132625673 132630242 4569 True 2105.666667 4863 89.1530 427 5178 3 chr3B.!!$R2 4751
3 TraesCS3D01G125400 chr3B 131514892 131521571 6679 True 1389.350000 3417 91.3565 860 5178 4 chr3B.!!$R1 4318
4 TraesCS3D01G125400 chr2B 73147276 73149397 2121 True 499.000000 774 88.0350 1154 2217 2 chr2B.!!$R1 1063
5 TraesCS3D01G125400 chr6A 571222202 571222713 511 True 499.000000 499 84.8660 1395 1897 1 chr6A.!!$R1 502
6 TraesCS3D01G125400 chr4A 10028054 10028565 511 True 499.000000 499 84.8660 1395 1897 1 chr4A.!!$R1 502
7 TraesCS3D01G125400 chr4A 703784462 703784965 503 False 496.000000 496 84.9710 1395 1894 1 chr4A.!!$F1 499
8 TraesCS3D01G125400 chr1B 562247646 562248154 508 False 477.000000 477 84.2000 1395 1894 1 chr1B.!!$F2 499
9 TraesCS3D01G125400 chr1A 417204183 417204690 507 True 457.000000 457 83.5250 1395 1897 1 chr1A.!!$R1 502
10 TraesCS3D01G125400 chr2D 628886239 628887005 766 False 324.000000 324 84.6020 1724 2092 2 chr2D.!!$F2 368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.036765 TACTCGCTGGCCATTCGTTT 60.037 50.0 21.87 14.48 0.00 3.60 F
1663 5316 0.034059 ACAAGCTGGAGTTCCTCGTG 59.966 55.0 0.00 3.26 36.82 4.35 F
2307 5989 0.246086 ACTCGCTGAGGCAAAGAGAG 59.754 55.0 15.28 15.28 44.39 3.20 F
3266 6957 0.390866 ATGCAAGCCAGACAGTCTCG 60.391 55.0 0.00 0.00 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 5709 0.531974 GGCGCATACCGATCAAAGGA 60.532 55.000 10.83 0.0 40.02 3.36 R
2867 6555 0.251077 CCTGTTTCAGAGGGCTGCTT 60.251 55.000 0.00 0.0 42.01 3.91 R
3680 7374 0.106268 TTGGTGTGCCATGGTGAGTT 60.106 50.000 14.67 0.0 45.56 3.01 R
4463 8252 1.060308 CGGCGCTCAATGTTTACCG 59.940 57.895 7.64 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.376176 CCCGGCCCGAACACGTAA 62.376 66.667 3.71 0.00 0.00 3.18
18 19 2.357275 CCGGCCCGAACACGTAAA 60.357 61.111 3.71 0.00 0.00 2.01
19 20 1.960250 CCGGCCCGAACACGTAAAA 60.960 57.895 3.71 0.00 0.00 1.52
20 21 1.494189 CGGCCCGAACACGTAAAAG 59.506 57.895 0.00 0.00 0.00 2.27
22 23 1.208358 GCCCGAACACGTAAAAGCC 59.792 57.895 0.00 0.00 0.00 4.35
23 24 1.871077 CCCGAACACGTAAAAGCCC 59.129 57.895 0.00 0.00 0.00 5.19
24 25 1.494189 CCGAACACGTAAAAGCCCG 59.506 57.895 0.00 0.00 0.00 6.13
25 26 1.223417 CCGAACACGTAAAAGCCCGT 61.223 55.000 0.00 0.00 37.90 5.28
26 27 0.162294 CGAACACGTAAAAGCCCGTC 59.838 55.000 0.00 0.00 34.59 4.79
27 28 0.514255 GAACACGTAAAAGCCCGTCC 59.486 55.000 0.00 0.00 34.59 4.79
28 29 1.223417 AACACGTAAAAGCCCGTCCG 61.223 55.000 0.00 0.00 34.59 4.79
68 69 3.690487 TCCTTCAGGAAAACGCGAA 57.310 47.368 15.93 0.00 42.18 4.70
69 70 1.956297 TCCTTCAGGAAAACGCGAAA 58.044 45.000 15.93 0.00 42.18 3.46
73 74 1.288350 TCAGGAAAACGCGAAAACGA 58.712 45.000 15.93 0.00 36.70 3.85
74 75 1.868498 TCAGGAAAACGCGAAAACGAT 59.132 42.857 15.93 0.00 36.70 3.73
76 77 1.069500 AGGAAAACGCGAAAACGATGG 60.069 47.619 15.93 0.00 36.70 3.51
77 78 1.323791 GAAAACGCGAAAACGATGGG 58.676 50.000 15.93 0.00 36.70 4.00
78 79 0.662077 AAAACGCGAAAACGATGGGC 60.662 50.000 15.93 0.00 36.70 5.36
79 80 2.466520 AAACGCGAAAACGATGGGCC 62.467 55.000 15.93 0.00 36.70 5.80
82 83 3.505184 CGAAAACGATGGGCCCGG 61.505 66.667 19.37 11.81 0.00 5.73
83 84 3.138128 GAAAACGATGGGCCCGGG 61.138 66.667 19.09 19.09 0.00 5.73
100 101 4.851179 GCCCGGCCCGGTCTTTAG 62.851 72.222 22.94 5.34 46.80 1.85
102 103 4.851179 CCGGCCCGGTCTTTAGGC 62.851 72.222 15.86 0.00 46.37 3.93
103 104 3.782443 CGGCCCGGTCTTTAGGCT 61.782 66.667 0.00 0.00 46.31 4.58
104 105 2.189784 GGCCCGGTCTTTAGGCTC 59.810 66.667 0.00 0.00 46.31 4.70
105 106 2.666098 GGCCCGGTCTTTAGGCTCA 61.666 63.158 0.00 0.00 46.31 4.26
106 107 1.298667 GCCCGGTCTTTAGGCTCAA 59.701 57.895 0.00 0.00 43.62 3.02
107 108 0.322187 GCCCGGTCTTTAGGCTCAAA 60.322 55.000 0.00 0.00 43.62 2.69
108 109 1.884928 GCCCGGTCTTTAGGCTCAAAA 60.885 52.381 0.00 0.00 43.62 2.44
109 110 2.723273 CCCGGTCTTTAGGCTCAAAAT 58.277 47.619 0.00 0.00 0.00 1.82
110 111 2.683362 CCCGGTCTTTAGGCTCAAAATC 59.317 50.000 0.00 0.00 0.00 2.17
111 112 3.610911 CCGGTCTTTAGGCTCAAAATCT 58.389 45.455 0.00 0.00 0.00 2.40
112 113 4.383770 CCCGGTCTTTAGGCTCAAAATCTA 60.384 45.833 0.00 0.00 0.00 1.98
114 115 4.811557 CGGTCTTTAGGCTCAAAATCTAGG 59.188 45.833 0.00 0.00 0.00 3.02
115 116 4.576873 GGTCTTTAGGCTCAAAATCTAGGC 59.423 45.833 0.00 0.00 38.50 3.93
117 118 3.577805 TTAGGCTCAAAATCTAGGCCC 57.422 47.619 0.00 0.00 43.36 5.80
118 119 0.181350 AGGCTCAAAATCTAGGCCCG 59.819 55.000 0.00 0.00 43.36 6.13
119 120 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
120 121 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
121 122 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
166 167 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
167 168 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
170 171 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
212 213 2.193248 GCCCATGGCCAGGACTAC 59.807 66.667 21.32 0.65 44.06 2.73
215 216 1.443407 CCATGGCCAGGACTACTCG 59.557 63.158 21.32 0.00 0.00 4.18
216 217 1.227380 CATGGCCAGGACTACTCGC 60.227 63.158 13.35 0.00 0.00 5.03
218 219 1.680522 ATGGCCAGGACTACTCGCTG 61.681 60.000 13.05 0.00 0.00 5.18
220 221 2.496817 CCAGGACTACTCGCTGGC 59.503 66.667 0.00 0.00 31.79 4.85
222 223 2.037367 AGGACTACTCGCTGGCCA 59.963 61.111 4.71 4.71 0.00 5.36
223 224 1.381872 AGGACTACTCGCTGGCCAT 60.382 57.895 5.51 0.00 0.00 4.40
224 225 0.978146 AGGACTACTCGCTGGCCATT 60.978 55.000 5.51 0.00 0.00 3.16
225 226 0.530870 GGACTACTCGCTGGCCATTC 60.531 60.000 5.51 0.00 0.00 2.67
226 227 0.872021 GACTACTCGCTGGCCATTCG 60.872 60.000 18.26 18.26 0.00 3.34
227 228 1.141881 CTACTCGCTGGCCATTCGT 59.858 57.895 21.87 12.96 0.00 3.85
228 229 0.460284 CTACTCGCTGGCCATTCGTT 60.460 55.000 21.87 14.75 0.00 3.85
229 230 0.036765 TACTCGCTGGCCATTCGTTT 60.037 50.000 21.87 14.48 0.00 3.60
230 231 1.135315 CTCGCTGGCCATTCGTTTG 59.865 57.895 21.87 12.60 0.00 2.93
231 232 2.179018 CGCTGGCCATTCGTTTGG 59.821 61.111 5.51 0.00 39.94 3.28
232 233 2.573340 GCTGGCCATTCGTTTGGG 59.427 61.111 5.51 0.00 37.24 4.12
237 238 4.128388 CCATTCGTTTGGGCGGGC 62.128 66.667 0.00 0.00 32.80 6.13
238 239 4.128388 CATTCGTTTGGGCGGGCC 62.128 66.667 14.65 14.65 0.00 5.80
239 240 4.669809 ATTCGTTTGGGCGGGCCA 62.670 61.111 20.63 20.63 37.98 5.36
263 264 2.024871 CTGTCGTCCGATCGCCTC 59.975 66.667 10.32 0.95 0.00 4.70
264 265 2.437895 TGTCGTCCGATCGCCTCT 60.438 61.111 10.32 0.00 0.00 3.69
266 267 2.124860 TCGTCCGATCGCCTCTGA 60.125 61.111 10.32 0.00 0.00 3.27
267 268 1.747745 TCGTCCGATCGCCTCTGAA 60.748 57.895 10.32 0.00 0.00 3.02
268 269 1.298713 CGTCCGATCGCCTCTGAAG 60.299 63.158 10.32 0.00 0.00 3.02
269 270 1.590259 GTCCGATCGCCTCTGAAGC 60.590 63.158 10.32 0.00 0.00 3.86
270 271 2.279784 CCGATCGCCTCTGAAGCC 60.280 66.667 10.32 0.00 0.00 4.35
271 272 2.496341 CGATCGCCTCTGAAGCCA 59.504 61.111 0.26 0.00 0.00 4.75
272 273 1.880340 CGATCGCCTCTGAAGCCAC 60.880 63.158 0.26 0.00 0.00 5.01
274 275 4.742201 TCGCCTCTGAAGCCACGC 62.742 66.667 0.00 0.00 0.00 5.34
276 277 2.437359 GCCTCTGAAGCCACGCAT 60.437 61.111 0.00 0.00 0.00 4.73
277 278 2.758089 GCCTCTGAAGCCACGCATG 61.758 63.158 0.00 0.00 0.00 4.06
278 279 1.078918 CCTCTGAAGCCACGCATGA 60.079 57.895 0.00 0.00 0.00 3.07
281 282 2.554142 CTCTGAAGCCACGCATGATTA 58.446 47.619 0.00 0.00 0.00 1.75
282 283 2.279741 TCTGAAGCCACGCATGATTAC 58.720 47.619 0.00 0.00 0.00 1.89
283 284 1.004610 CTGAAGCCACGCATGATTACG 60.005 52.381 0.00 0.00 0.00 3.18
284 285 1.286501 GAAGCCACGCATGATTACGA 58.713 50.000 0.00 0.00 0.00 3.43
285 286 1.867233 GAAGCCACGCATGATTACGAT 59.133 47.619 0.00 0.00 0.00 3.73
287 288 2.677199 AGCCACGCATGATTACGATAG 58.323 47.619 0.00 0.00 46.19 2.08
288 289 1.726791 GCCACGCATGATTACGATAGG 59.273 52.381 0.00 0.00 43.77 2.57
289 290 1.726791 CCACGCATGATTACGATAGGC 59.273 52.381 0.00 0.00 43.77 3.93
290 291 2.610479 CCACGCATGATTACGATAGGCT 60.610 50.000 0.00 0.00 43.77 4.58
292 293 3.059884 ACGCATGATTACGATAGGCTTG 58.940 45.455 0.00 0.00 43.77 4.01
293 294 2.159787 CGCATGATTACGATAGGCTTGC 60.160 50.000 0.00 0.00 43.77 4.01
294 295 2.159787 GCATGATTACGATAGGCTTGCG 60.160 50.000 0.00 0.00 43.77 4.85
296 297 0.435008 GATTACGATAGGCTTGCGCG 59.565 55.000 0.00 0.00 43.77 6.86
317 318 2.432628 GGAGTTGGTGGCGTCGAG 60.433 66.667 0.00 0.00 0.00 4.04
319 320 1.300697 GAGTTGGTGGCGTCGAGTT 60.301 57.895 0.00 0.00 0.00 3.01
320 321 1.557443 GAGTTGGTGGCGTCGAGTTG 61.557 60.000 0.00 0.00 0.00 3.16
322 323 3.818121 TTGGTGGCGTCGAGTTGGG 62.818 63.158 0.00 0.00 0.00 4.12
325 326 4.373116 TGGCGTCGAGTTGGGCTC 62.373 66.667 0.00 0.00 40.77 4.70
341 342 3.989698 CTCGTGCTCACCGCGGATT 62.990 63.158 35.90 7.50 46.91 3.01
343 344 2.785258 GTGCTCACCGCGGATTTC 59.215 61.111 35.90 18.00 43.27 2.17
345 346 1.302112 TGCTCACCGCGGATTTCAA 60.302 52.632 35.90 9.78 43.27 2.69
346 347 0.886938 TGCTCACCGCGGATTTCAAA 60.887 50.000 35.90 7.94 43.27 2.69
347 348 0.454452 GCTCACCGCGGATTTCAAAC 60.454 55.000 35.90 8.58 0.00 2.93
348 349 0.168128 CTCACCGCGGATTTCAAACC 59.832 55.000 35.90 0.00 0.00 3.27
353 354 2.483288 CGGATTTCAAACCGGCCG 59.517 61.111 21.04 21.04 44.59 6.13
358 359 1.538075 GATTTCAAACCGGCCGAAAGA 59.462 47.619 30.73 16.03 32.54 2.52
360 361 1.390565 TTCAAACCGGCCGAAAGAAA 58.609 45.000 30.73 12.49 0.00 2.52
361 362 0.664224 TCAAACCGGCCGAAAGAAAC 59.336 50.000 30.73 0.00 0.00 2.78
362 363 0.382515 CAAACCGGCCGAAAGAAACA 59.617 50.000 30.73 0.00 0.00 2.83
363 364 1.104630 AAACCGGCCGAAAGAAACAA 58.895 45.000 30.73 0.00 0.00 2.83
364 365 1.104630 AACCGGCCGAAAGAAACAAA 58.895 45.000 30.73 0.00 0.00 2.83
365 366 0.382873 ACCGGCCGAAAGAAACAAAC 59.617 50.000 30.73 0.00 0.00 2.93
366 367 0.318360 CCGGCCGAAAGAAACAAACC 60.318 55.000 30.73 0.00 0.00 3.27
367 368 0.382515 CGGCCGAAAGAAACAAACCA 59.617 50.000 24.07 0.00 0.00 3.67
368 369 1.000717 CGGCCGAAAGAAACAAACCAT 60.001 47.619 24.07 0.00 0.00 3.55
369 370 2.672714 GGCCGAAAGAAACAAACCATC 58.327 47.619 0.00 0.00 0.00 3.51
370 371 2.315901 GCCGAAAGAAACAAACCATCG 58.684 47.619 0.00 0.00 0.00 3.84
371 372 2.031508 GCCGAAAGAAACAAACCATCGA 60.032 45.455 0.00 0.00 0.00 3.59
373 374 4.794169 CCGAAAGAAACAAACCATCGATT 58.206 39.130 0.00 0.00 0.00 3.34
375 376 5.689961 CCGAAAGAAACAAACCATCGATTTT 59.310 36.000 0.00 0.00 0.00 1.82
376 377 6.858993 CCGAAAGAAACAAACCATCGATTTTA 59.141 34.615 0.00 0.00 0.00 1.52
377 378 7.380065 CCGAAAGAAACAAACCATCGATTTTAA 59.620 33.333 0.00 0.00 0.00 1.52
378 379 8.747666 CGAAAGAAACAAACCATCGATTTTAAA 58.252 29.630 0.00 0.00 0.00 1.52
381 382 8.757164 AGAAACAAACCATCGATTTTAAATCC 57.243 30.769 11.53 0.00 0.00 3.01
382 383 8.585018 AGAAACAAACCATCGATTTTAAATCCT 58.415 29.630 11.53 0.00 0.00 3.24
383 384 8.532977 AAACAAACCATCGATTTTAAATCCTG 57.467 30.769 11.53 9.26 0.00 3.86
384 385 7.227049 ACAAACCATCGATTTTAAATCCTGT 57.773 32.000 11.53 2.18 0.00 4.00
385 386 7.312899 ACAAACCATCGATTTTAAATCCTGTC 58.687 34.615 11.53 0.00 0.00 3.51
386 387 7.176690 ACAAACCATCGATTTTAAATCCTGTCT 59.823 33.333 11.53 0.00 0.00 3.41
387 388 8.673711 CAAACCATCGATTTTAAATCCTGTCTA 58.326 33.333 11.53 0.00 0.00 2.59
388 389 8.801882 AACCATCGATTTTAAATCCTGTCTAA 57.198 30.769 11.53 0.00 0.00 2.10
389 390 8.801882 ACCATCGATTTTAAATCCTGTCTAAA 57.198 30.769 11.53 0.00 0.00 1.85
390 391 9.238368 ACCATCGATTTTAAATCCTGTCTAAAA 57.762 29.630 11.53 0.00 0.00 1.52
473 474 1.632948 CCACTCTGCATGCTGTGTCG 61.633 60.000 23.95 16.67 0.00 4.35
522 524 4.546829 ATGCCAACTCATCAAAGCATTT 57.453 36.364 0.00 0.00 37.68 2.32
526 528 3.368739 CCAACTCATCAAAGCATTTCCCC 60.369 47.826 0.00 0.00 35.03 4.81
536 538 2.026641 AGCATTTCCCCACATCAATCG 58.973 47.619 0.00 0.00 0.00 3.34
547 549 5.767665 CCCCACATCAATCGGTAATTAATCA 59.232 40.000 0.00 0.00 0.00 2.57
567 570 7.678947 AATCATCGCCATAAATAAGGAGAAG 57.321 36.000 0.00 0.00 37.27 2.85
575 578 8.926710 CGCCATAAATAAGGAGAAGTAATACAG 58.073 37.037 0.00 0.00 0.00 2.74
592 595 9.565090 AGTAATACAGGTATACAATCTCGTACA 57.435 33.333 5.01 0.00 0.00 2.90
597 600 4.888239 AGGTATACAATCTCGTACAGCACT 59.112 41.667 5.01 0.00 0.00 4.40
621 657 1.714899 GCCAGTTGTGCACAGAACGT 61.715 55.000 20.59 3.99 39.29 3.99
623 659 1.526887 CCAGTTGTGCACAGAACGTAG 59.473 52.381 20.59 11.26 39.29 3.51
629 665 2.092882 GCACAGAACGTAGTCGCCC 61.093 63.158 0.00 0.00 45.00 6.13
630 666 1.445582 CACAGAACGTAGTCGCCCC 60.446 63.158 0.00 0.00 45.00 5.80
631 667 2.202570 CAGAACGTAGTCGCCCCG 60.203 66.667 0.00 0.00 45.00 5.73
633 669 4.125695 GAACGTAGTCGCCCCGCT 62.126 66.667 0.00 0.00 45.00 5.52
637 673 3.766691 GTAGTCGCCCCGCTCCAA 61.767 66.667 0.00 0.00 0.00 3.53
638 674 3.458163 TAGTCGCCCCGCTCCAAG 61.458 66.667 0.00 0.00 0.00 3.61
639 675 3.949885 TAGTCGCCCCGCTCCAAGA 62.950 63.158 0.00 0.00 0.00 3.02
640 676 4.162690 GTCGCCCCGCTCCAAGAT 62.163 66.667 0.00 0.00 0.00 2.40
641 677 3.849951 TCGCCCCGCTCCAAGATC 61.850 66.667 0.00 0.00 0.00 2.75
653 689 2.924290 CTCCAAGATCGGACGAAGAAAC 59.076 50.000 0.00 0.00 0.00 2.78
696 732 3.957586 CCACCAGCCAGCCTCACA 61.958 66.667 0.00 0.00 0.00 3.58
775 812 4.825679 CTCCTCCCCCTCCCCACC 62.826 77.778 0.00 0.00 0.00 4.61
821 858 2.259818 CCGTTGCGCAGAGAGACT 59.740 61.111 11.31 0.00 0.00 3.24
823 860 2.148982 CGTTGCGCAGAGAGACTCG 61.149 63.158 11.31 3.31 35.36 4.18
824 861 2.126307 TTGCGCAGAGAGACTCGC 60.126 61.111 11.31 0.00 41.61 5.03
825 862 2.919494 TTGCGCAGAGAGACTCGCA 61.919 57.895 11.31 6.53 45.39 5.10
826 863 2.579249 GCGCAGAGAGACTCGCAG 60.579 66.667 0.30 1.49 41.24 5.18
827 864 2.101965 CGCAGAGAGACTCGCAGG 59.898 66.667 9.00 1.62 35.36 4.85
828 865 2.202730 GCAGAGAGACTCGCAGGC 60.203 66.667 9.00 7.89 35.36 4.85
829 866 2.999485 GCAGAGAGACTCGCAGGCA 61.999 63.158 14.79 0.00 35.36 4.75
841 878 2.747855 CAGGCAAACGCTCCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
887 924 1.275010 TCAGCTGTATTTCACCGCTCA 59.725 47.619 14.67 0.00 43.46 4.26
918 3415 2.093816 GCACACCTCAGTCATCATCAGA 60.094 50.000 0.00 0.00 0.00 3.27
943 3440 0.249489 GATCCCGATTCCCGACACAG 60.249 60.000 0.00 0.00 41.76 3.66
964 3477 2.688507 CAGTCAACATTGCTCCGTAGT 58.311 47.619 0.00 0.00 0.00 2.73
965 3478 2.413112 CAGTCAACATTGCTCCGTAGTG 59.587 50.000 0.00 0.00 0.00 2.74
966 3479 1.732259 GTCAACATTGCTCCGTAGTGG 59.268 52.381 0.00 0.00 40.09 4.00
967 3480 1.346395 TCAACATTGCTCCGTAGTGGT 59.654 47.619 0.00 0.00 39.52 4.16
968 3481 2.563620 TCAACATTGCTCCGTAGTGGTA 59.436 45.455 0.00 0.00 39.52 3.25
970 3483 2.176889 ACATTGCTCCGTAGTGGTACT 58.823 47.619 0.00 0.00 39.52 2.73
971 3484 3.359033 ACATTGCTCCGTAGTGGTACTA 58.641 45.455 0.00 0.00 39.52 1.82
973 3486 2.048444 TGCTCCGTAGTGGTACTAGG 57.952 55.000 0.00 0.00 39.52 3.02
974 3487 1.283029 TGCTCCGTAGTGGTACTAGGT 59.717 52.381 0.00 0.00 35.45 3.08
975 3488 2.505407 TGCTCCGTAGTGGTACTAGGTA 59.495 50.000 0.00 0.00 35.45 3.08
976 3489 3.137533 GCTCCGTAGTGGTACTAGGTAG 58.862 54.545 0.00 3.42 35.45 3.18
977 3490 3.432890 GCTCCGTAGTGGTACTAGGTAGT 60.433 52.174 0.00 0.00 35.45 2.73
978 3491 4.202264 GCTCCGTAGTGGTACTAGGTAGTA 60.202 50.000 0.00 0.00 35.45 1.82
986 3499 2.533266 TACTAGGTAGTACTCCGGCG 57.467 55.000 0.00 0.00 37.73 6.46
987 3500 0.179034 ACTAGGTAGTACTCCGGCGG 60.179 60.000 22.51 22.51 34.13 6.13
988 3501 1.513836 CTAGGTAGTACTCCGGCGGC 61.514 65.000 23.83 7.19 0.00 6.53
989 3502 4.261781 GGTAGTACTCCGGCGGCG 62.262 72.222 26.12 26.12 0.00 6.46
990 3503 4.261781 GTAGTACTCCGGCGGCGG 62.262 72.222 41.57 41.57 0.00 6.13
1184 3710 3.081409 TACCTGCCCGCCTTCTCC 61.081 66.667 0.00 0.00 0.00 3.71
1205 3745 4.537433 GCAGATCCGCTCGCCCTT 62.537 66.667 0.00 0.00 0.00 3.95
1208 3748 2.028337 GATCCGCTCGCCCTTCTC 59.972 66.667 0.00 0.00 0.00 2.87
1209 3749 2.443016 ATCCGCTCGCCCTTCTCT 60.443 61.111 0.00 0.00 0.00 3.10
1210 3750 2.414840 GATCCGCTCGCCCTTCTCTC 62.415 65.000 0.00 0.00 0.00 3.20
1211 3751 4.214327 CCGCTCGCCCTTCTCTCC 62.214 72.222 0.00 0.00 0.00 3.71
1212 3752 3.144193 CGCTCGCCCTTCTCTCCT 61.144 66.667 0.00 0.00 0.00 3.69
1214 3754 2.791868 GCTCGCCCTTCTCTCCTCC 61.792 68.421 0.00 0.00 0.00 4.30
1431 3973 4.913126 GGGAACGTGCTCTACCTG 57.087 61.111 0.00 0.00 0.00 4.00
1497 4338 1.745489 CCCCTGCGCCAGTAAGAAC 60.745 63.158 4.18 0.00 0.00 3.01
1500 4341 0.517316 CCTGCGCCAGTAAGAACAAC 59.483 55.000 4.18 0.00 0.00 3.32
1502 4343 1.461127 CTGCGCCAGTAAGAACAACTC 59.539 52.381 4.18 0.00 0.00 3.01
1503 4344 0.438830 GCGCCAGTAAGAACAACTCG 59.561 55.000 0.00 0.00 0.00 4.18
1504 4345 1.779569 CGCCAGTAAGAACAACTCGT 58.220 50.000 0.00 0.00 0.00 4.18
1512 4353 5.981315 CAGTAAGAACAACTCGTTTACCTGA 59.019 40.000 0.00 0.00 38.19 3.86
1514 4355 4.931661 AGAACAACTCGTTTACCTGAGA 57.068 40.909 0.00 0.00 38.19 3.27
1527 4368 5.808366 TTACCTGAGATGTCTGTTCTGTT 57.192 39.130 0.00 0.00 0.00 3.16
1532 4373 5.184864 CCTGAGATGTCTGTTCTGTTAGTCT 59.815 44.000 0.00 0.00 0.00 3.24
1536 4377 4.585955 TGTCTGTTCTGTTAGTCTGTCC 57.414 45.455 0.00 0.00 0.00 4.02
1663 5316 0.034059 ACAAGCTGGAGTTCCTCGTG 59.966 55.000 0.00 3.26 36.82 4.35
1760 5413 1.530655 TGACCTCCTGTCTGACGCA 60.531 57.895 2.98 0.00 44.75 5.24
1762 5415 2.262915 CCTCCTGTCTGACGCACC 59.737 66.667 2.98 0.00 0.00 5.01
1763 5416 2.574018 CCTCCTGTCTGACGCACCA 61.574 63.158 2.98 0.00 0.00 4.17
1773 5435 4.722700 ACGCACCATGCTGACCCC 62.723 66.667 0.00 0.00 42.25 4.95
1775 5437 4.408821 GCACCATGCTGACCCCGA 62.409 66.667 0.00 0.00 40.96 5.14
1776 5438 2.436646 CACCATGCTGACCCCGAC 60.437 66.667 0.00 0.00 0.00 4.79
1777 5439 2.607750 ACCATGCTGACCCCGACT 60.608 61.111 0.00 0.00 0.00 4.18
1778 5440 1.305802 ACCATGCTGACCCCGACTA 60.306 57.895 0.00 0.00 0.00 2.59
1779 5441 1.144057 CCATGCTGACCCCGACTAC 59.856 63.158 0.00 0.00 0.00 2.73
1780 5442 1.144057 CATGCTGACCCCGACTACC 59.856 63.158 0.00 0.00 0.00 3.18
1796 5458 1.886542 CTACCCAAACAGGTTTCAGGC 59.113 52.381 9.36 0.00 41.58 4.85
1835 5506 1.529865 GAAACTGTACGTGCAGGAACC 59.470 52.381 32.48 17.14 40.59 3.62
1930 5601 3.427425 CCGCACCATTTCGCCGAA 61.427 61.111 0.00 0.00 0.00 4.30
2006 5677 0.804989 CAACTCGGTGCTCAAATCCC 59.195 55.000 0.00 0.00 0.00 3.85
2057 5729 0.531974 TCCTTTGATCGGTATGCGCC 60.532 55.000 4.18 0.00 0.00 6.53
2121 5797 4.797800 TCTGCATATGAGAGCTATGGAC 57.202 45.455 6.97 0.00 0.00 4.02
2189 5868 1.122019 AAGGACGAGAACCTGGCAGT 61.122 55.000 14.43 0.00 37.85 4.40
2307 5989 0.246086 ACTCGCTGAGGCAAAGAGAG 59.754 55.000 15.28 15.28 44.39 3.20
2341 6023 1.202734 AGCAAGCTGAGCTCACTGAAA 60.203 47.619 13.74 0.00 38.25 2.69
2705 6393 1.991264 CAGAGAGCAATGTGTGACTCG 59.009 52.381 0.00 0.00 37.31 4.18
2867 6555 3.764434 ACTTGCCAGAAAGAGTATCGAGA 59.236 43.478 0.00 0.00 42.67 4.04
2917 6605 2.030027 TTCTTGGAGGAGGCTCAGAA 57.970 50.000 17.69 12.96 0.00 3.02
3041 6732 2.649742 TCCCAAGAAGGTCCATCTCT 57.350 50.000 0.00 0.00 34.66 3.10
3068 6759 5.758296 TGATGAAAACAGGAGTTACACTGAC 59.242 40.000 12.65 3.97 36.84 3.51
3111 6802 0.931005 GAAGCTAGAACAATCGGCGG 59.069 55.000 7.21 0.00 35.43 6.13
3266 6957 0.390866 ATGCAAGCCAGACAGTCTCG 60.391 55.000 0.00 0.00 0.00 4.04
3377 7068 2.821969 ACCAGTGCAAAAGGATGATGAC 59.178 45.455 7.28 0.00 0.00 3.06
3504 7198 3.319122 ACAAGAAGGAAATGAAGTGGCAC 59.681 43.478 10.29 10.29 0.00 5.01
3626 7320 3.325870 TGAGATCACCGAATGTGTTGAC 58.674 45.455 0.00 0.00 45.61 3.18
3647 7341 4.825422 ACGAGATCACTGAATGTGTTGAT 58.175 39.130 0.00 0.00 46.27 2.57
3659 7353 3.782889 TGTGTTGATGAGATCGTCGAT 57.217 42.857 7.63 7.63 34.69 3.59
3669 7363 0.591741 GATCGTCGATGTCGGTGGTC 60.592 60.000 13.54 0.00 40.29 4.02
3677 7371 2.048127 GTCGGTGGTCAGAGTGCC 60.048 66.667 0.00 0.00 0.00 5.01
3680 7374 4.314440 GGTGGTCAGAGTGCCGCA 62.314 66.667 0.00 0.00 37.02 5.69
3742 7436 4.788925 TCAAGGAGGAGAAAGTGGAAAA 57.211 40.909 0.00 0.00 0.00 2.29
3758 7452 5.015178 AGTGGAAAAGAAGATATGGTTCCCA 59.985 40.000 0.00 0.00 38.19 4.37
3767 7461 1.887797 TATGGTTCCCAAGGTCCGAT 58.112 50.000 0.00 0.00 36.95 4.18
3819 7513 1.767681 CTCCTTCCAAGATCCTGGGAG 59.232 57.143 11.40 11.40 41.34 4.30
3854 7548 2.594303 TGTGCAGGCAGGAAACCG 60.594 61.111 0.00 0.00 0.00 4.44
3956 7650 0.321919 AGCAGGCGATCAAGAAAGCA 60.322 50.000 0.00 0.00 0.00 3.91
3972 7666 2.867109 AGCAGTACACAAATGAGGCT 57.133 45.000 0.00 0.00 0.00 4.58
4009 7706 6.420604 GTGTTTATTCTTTTCCATGTGGTGTG 59.579 38.462 0.00 0.00 36.34 3.82
4011 7708 6.723298 TTATTCTTTTCCATGTGGTGTGTT 57.277 33.333 0.00 0.00 36.34 3.32
4012 7709 7.825331 TTATTCTTTTCCATGTGGTGTGTTA 57.175 32.000 0.00 0.00 36.34 2.41
4014 7711 6.723298 TTCTTTTCCATGTGGTGTGTTATT 57.277 33.333 0.00 0.00 36.34 1.40
4021 7719 7.531857 TCCATGTGGTGTGTTATTATTTGTT 57.468 32.000 0.00 0.00 36.34 2.83
4071 7773 6.760770 AGCTGAATAAGTTAGTGATGAGCTTC 59.239 38.462 0.00 0.00 28.78 3.86
4078 7780 4.530161 AGTTAGTGATGAGCTTCCAGACTT 59.470 41.667 0.00 0.00 0.00 3.01
4081 7786 3.834813 AGTGATGAGCTTCCAGACTTGTA 59.165 43.478 0.00 0.00 0.00 2.41
4099 7804 5.246203 ACTTGTATCTGAAGTTCTGCCTGTA 59.754 40.000 4.17 0.00 28.94 2.74
4131 7836 5.072600 TGTGGTTAGTTTAGTGATCACCCTT 59.927 40.000 22.21 6.78 0.00 3.95
4232 7963 5.865085 TGTTTCTGTGAGTAAGGCATAGTT 58.135 37.500 0.00 0.00 0.00 2.24
4237 7968 5.932303 TCTGTGAGTAAGGCATAGTTTGAAC 59.068 40.000 0.00 0.00 0.00 3.18
4244 7975 5.695851 AAGGCATAGTTTGAACAACTCTG 57.304 39.130 0.00 0.00 0.00 3.35
4246 7977 4.757149 AGGCATAGTTTGAACAACTCTGTC 59.243 41.667 0.00 0.00 33.45 3.51
4247 7978 4.757149 GGCATAGTTTGAACAACTCTGTCT 59.243 41.667 0.00 0.00 33.45 3.41
4248 7979 5.334414 GGCATAGTTTGAACAACTCTGTCTG 60.334 44.000 0.00 0.00 33.45 3.51
4249 7980 5.466728 GCATAGTTTGAACAACTCTGTCTGA 59.533 40.000 0.00 0.00 33.45 3.27
4333 8064 1.730121 GCAATCAGATTGGCGTGTGTG 60.730 52.381 22.25 0.00 40.57 3.82
4357 8099 8.454106 GTGCTACTATTTCATGATTTGTGAAGT 58.546 33.333 0.00 0.00 36.96 3.01
4463 8252 5.648526 GGAGAGACAAATTAAGAAGAACCCC 59.351 44.000 0.00 0.00 0.00 4.95
4464 8253 5.246307 AGAGACAAATTAAGAAGAACCCCG 58.754 41.667 0.00 0.00 0.00 5.73
4582 8384 2.437359 CTCGCCCTGCCCTTCTTG 60.437 66.667 0.00 0.00 0.00 3.02
4684 8501 1.078848 GAACCAGAGCGTGCTCCAT 60.079 57.895 17.76 1.49 43.70 3.41
4696 8513 1.976474 GCTCCATTTGAACCCGCCA 60.976 57.895 0.00 0.00 0.00 5.69
4697 8514 1.531739 GCTCCATTTGAACCCGCCAA 61.532 55.000 0.00 0.00 0.00 4.52
4698 8515 0.243636 CTCCATTTGAACCCGCCAAC 59.756 55.000 0.00 0.00 0.00 3.77
4699 8516 1.080839 CCATTTGAACCCGCCAACG 60.081 57.895 0.00 0.00 39.67 4.10
4700 8517 1.732683 CATTTGAACCCGCCAACGC 60.733 57.895 0.00 0.00 38.22 4.84
4701 8518 2.926420 ATTTGAACCCGCCAACGCC 61.926 57.895 0.00 0.00 38.22 5.68
4821 8647 1.674764 CTGGCGGATGAGAGCTGTCT 61.675 60.000 12.66 0.00 34.86 3.41
5056 8882 0.035630 AGAAGAGCACCTGCATCACC 60.036 55.000 0.00 0.00 45.16 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.871077 GGGCTTTTACGTGTTCGGG 59.129 57.895 0.00 0.00 41.85 5.14
6 7 1.223417 ACGGGCTTTTACGTGTTCGG 61.223 55.000 0.00 0.00 42.39 4.30
7 8 0.162294 GACGGGCTTTTACGTGTTCG 59.838 55.000 0.00 0.00 44.24 3.95
8 9 0.514255 GGACGGGCTTTTACGTGTTC 59.486 55.000 0.00 0.00 44.24 3.18
9 10 1.223417 CGGACGGGCTTTTACGTGTT 61.223 55.000 0.00 0.00 44.24 3.32
10 11 1.665599 CGGACGGGCTTTTACGTGT 60.666 57.895 0.00 0.00 44.24 4.49
11 12 2.385091 CCGGACGGGCTTTTACGTG 61.385 63.158 0.00 0.00 44.24 4.49
43 44 2.741486 TTTTCCTGAAGGACGGGCCG 62.741 60.000 27.06 27.06 45.39 6.13
44 45 1.074248 TTTTCCTGAAGGACGGGCC 59.926 57.895 0.00 0.00 45.39 5.80
45 46 1.574702 CGTTTTCCTGAAGGACGGGC 61.575 60.000 0.00 0.00 45.39 6.13
46 47 1.574702 GCGTTTTCCTGAAGGACGGG 61.575 60.000 15.05 0.00 45.39 5.28
47 48 1.866925 GCGTTTTCCTGAAGGACGG 59.133 57.895 15.05 0.00 45.39 4.79
48 49 0.942410 TCGCGTTTTCCTGAAGGACG 60.942 55.000 5.77 1.64 45.39 4.79
50 51 1.956297 TTTCGCGTTTTCCTGAAGGA 58.044 45.000 5.77 0.00 43.73 3.36
51 52 2.381589 GTTTTCGCGTTTTCCTGAAGG 58.618 47.619 5.77 0.00 0.00 3.46
52 53 2.034076 CGTTTTCGCGTTTTCCTGAAG 58.966 47.619 5.77 0.00 36.22 3.02
54 55 1.288350 TCGTTTTCGCGTTTTCCTGA 58.712 45.000 5.77 0.00 43.73 3.86
55 56 1.969256 CATCGTTTTCGCGTTTTCCTG 59.031 47.619 5.77 0.00 43.73 3.86
56 57 1.069500 CCATCGTTTTCGCGTTTTCCT 60.069 47.619 5.77 0.00 43.73 3.36
57 58 1.323791 CCATCGTTTTCGCGTTTTCC 58.676 50.000 5.77 0.00 43.73 3.13
58 59 1.323791 CCCATCGTTTTCGCGTTTTC 58.676 50.000 5.77 0.00 43.73 2.29
59 60 0.662077 GCCCATCGTTTTCGCGTTTT 60.662 50.000 5.77 0.00 43.73 2.43
60 61 1.081708 GCCCATCGTTTTCGCGTTT 60.082 52.632 5.77 0.00 43.73 3.60
61 62 2.559330 GCCCATCGTTTTCGCGTT 59.441 55.556 5.77 0.00 43.73 4.84
62 63 3.428282 GGCCCATCGTTTTCGCGT 61.428 61.111 5.77 0.00 43.73 6.01
63 64 4.174129 GGGCCCATCGTTTTCGCG 62.174 66.667 19.95 0.00 43.73 5.87
64 65 4.174129 CGGGCCCATCGTTTTCGC 62.174 66.667 24.92 0.00 43.73 4.70
65 66 3.505184 CCGGGCCCATCGTTTTCG 61.505 66.667 24.92 3.62 45.64 3.46
86 87 3.735037 GAGCCTAAAGACCGGGCCG 62.735 68.421 21.46 21.46 46.31 6.13
87 88 2.189784 GAGCCTAAAGACCGGGCC 59.810 66.667 1.76 0.00 46.31 5.80
88 89 0.322187 TTTGAGCCTAAAGACCGGGC 60.322 55.000 6.32 0.52 45.57 6.13
89 90 2.194201 TTTTGAGCCTAAAGACCGGG 57.806 50.000 6.32 0.00 0.00 5.73
90 91 3.610911 AGATTTTGAGCCTAAAGACCGG 58.389 45.455 0.00 0.00 0.00 5.28
91 92 4.811557 CCTAGATTTTGAGCCTAAAGACCG 59.188 45.833 0.00 0.00 0.00 4.79
92 93 4.576873 GCCTAGATTTTGAGCCTAAAGACC 59.423 45.833 0.00 0.00 0.00 3.85
93 94 4.576873 GGCCTAGATTTTGAGCCTAAAGAC 59.423 45.833 0.00 0.00 40.57 3.01
94 95 4.385310 GGGCCTAGATTTTGAGCCTAAAGA 60.385 45.833 0.84 0.00 43.36 2.52
95 96 3.885901 GGGCCTAGATTTTGAGCCTAAAG 59.114 47.826 0.84 0.00 43.36 1.85
96 97 3.684413 CGGGCCTAGATTTTGAGCCTAAA 60.684 47.826 0.84 0.00 43.36 1.85
98 99 1.416401 CGGGCCTAGATTTTGAGCCTA 59.584 52.381 0.84 0.00 43.36 3.93
99 100 0.181350 CGGGCCTAGATTTTGAGCCT 59.819 55.000 0.84 0.00 43.36 4.58
100 101 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
102 103 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
103 104 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
150 151 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
152 153 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
196 197 1.832912 GAGTAGTCCTGGCCATGGG 59.167 63.158 15.13 4.96 0.00 4.00
198 199 1.227380 GCGAGTAGTCCTGGCCATG 60.227 63.158 5.51 2.84 38.85 3.66
199 200 1.381872 AGCGAGTAGTCCTGGCCAT 60.382 57.895 5.51 0.00 45.27 4.40
201 202 2.496817 CAGCGAGTAGTCCTGGCC 59.503 66.667 0.00 0.00 45.27 5.36
202 203 2.496817 CCAGCGAGTAGTCCTGGC 59.503 66.667 17.18 5.30 44.56 4.85
203 204 2.496817 GCCAGCGAGTAGTCCTGG 59.503 66.667 21.79 21.79 46.95 4.45
204 205 1.680522 ATGGCCAGCGAGTAGTCCTG 61.681 60.000 13.05 8.37 0.00 3.86
205 206 0.978146 AATGGCCAGCGAGTAGTCCT 60.978 55.000 13.05 0.00 0.00 3.85
207 208 0.872021 CGAATGGCCAGCGAGTAGTC 60.872 60.000 22.28 0.00 0.00 2.59
208 209 1.141881 CGAATGGCCAGCGAGTAGT 59.858 57.895 22.28 0.00 0.00 2.73
210 211 0.036765 AAACGAATGGCCAGCGAGTA 60.037 50.000 30.32 0.00 0.00 2.59
212 213 1.135315 CAAACGAATGGCCAGCGAG 59.865 57.895 30.32 18.11 0.00 5.03
215 216 2.573340 CCCAAACGAATGGCCAGC 59.427 61.111 13.05 4.74 39.26 4.85
216 217 2.573340 GCCCAAACGAATGGCCAG 59.427 61.111 13.05 0.00 39.30 4.85
218 219 4.128388 CCGCCCAAACGAATGGCC 62.128 66.667 0.00 0.00 42.29 5.36
220 221 4.128388 GCCCGCCCAAACGAATGG 62.128 66.667 0.00 0.00 40.35 3.16
222 223 4.669809 TGGCCCGCCCAAACGAAT 62.670 61.111 0.00 0.00 41.82 3.34
245 246 4.194720 AGGCGATCGGACGACAGC 62.195 66.667 18.30 12.70 44.44 4.40
246 247 2.024871 GAGGCGATCGGACGACAG 59.975 66.667 18.30 0.00 44.44 3.51
247 248 2.437895 AGAGGCGATCGGACGACA 60.438 61.111 18.30 0.00 44.44 4.35
248 249 1.989966 TTCAGAGGCGATCGGACGAC 61.990 60.000 18.30 0.00 42.10 4.34
249 250 1.715862 CTTCAGAGGCGATCGGACGA 61.716 60.000 18.30 0.00 31.34 4.20
251 252 1.590259 GCTTCAGAGGCGATCGGAC 60.590 63.158 18.30 0.00 31.34 4.79
252 253 2.786495 GGCTTCAGAGGCGATCGGA 61.786 63.158 18.30 1.68 38.80 4.55
253 254 2.279784 GGCTTCAGAGGCGATCGG 60.280 66.667 18.30 0.00 38.80 4.18
260 261 0.463295 ATCATGCGTGGCTTCAGAGG 60.463 55.000 5.98 0.00 0.00 3.69
261 262 1.376543 AATCATGCGTGGCTTCAGAG 58.623 50.000 5.98 0.00 0.00 3.35
263 264 1.004610 CGTAATCATGCGTGGCTTCAG 60.005 52.381 5.98 0.00 0.00 3.02
264 265 1.006086 CGTAATCATGCGTGGCTTCA 58.994 50.000 5.98 0.00 0.00 3.02
266 267 1.953559 ATCGTAATCATGCGTGGCTT 58.046 45.000 5.98 3.15 35.99 4.35
267 268 2.610479 CCTATCGTAATCATGCGTGGCT 60.610 50.000 5.98 0.00 35.99 4.75
268 269 1.726791 CCTATCGTAATCATGCGTGGC 59.273 52.381 5.98 0.00 35.99 5.01
269 270 1.726791 GCCTATCGTAATCATGCGTGG 59.273 52.381 5.98 0.00 35.99 4.94
270 271 2.677199 AGCCTATCGTAATCATGCGTG 58.323 47.619 0.00 0.00 35.99 5.34
271 272 3.059884 CAAGCCTATCGTAATCATGCGT 58.940 45.455 0.00 0.00 35.99 5.24
272 273 2.159787 GCAAGCCTATCGTAATCATGCG 60.160 50.000 0.00 0.00 35.85 4.73
274 275 3.712162 CGCAAGCCTATCGTAATCATG 57.288 47.619 0.00 0.00 0.00 3.07
299 300 3.934391 CTCGACGCCACCAACTCCC 62.934 68.421 0.00 0.00 0.00 4.30
300 301 2.432628 CTCGACGCCACCAACTCC 60.433 66.667 0.00 0.00 0.00 3.85
301 302 1.300697 AACTCGACGCCACCAACTC 60.301 57.895 0.00 0.00 0.00 3.01
302 303 1.594293 CAACTCGACGCCACCAACT 60.594 57.895 0.00 0.00 0.00 3.16
303 304 2.604174 CCAACTCGACGCCACCAAC 61.604 63.158 0.00 0.00 0.00 3.77
304 305 2.280524 CCAACTCGACGCCACCAA 60.281 61.111 0.00 0.00 0.00 3.67
305 306 4.308458 CCCAACTCGACGCCACCA 62.308 66.667 0.00 0.00 0.00 4.17
307 308 4.681978 AGCCCAACTCGACGCCAC 62.682 66.667 0.00 0.00 0.00 5.01
308 309 4.373116 GAGCCCAACTCGACGCCA 62.373 66.667 0.00 0.00 35.18 5.69
315 316 2.029844 GTGAGCACGAGCCCAACTC 61.030 63.158 0.00 0.00 43.56 3.01
317 318 3.050275 GGTGAGCACGAGCCCAAC 61.050 66.667 0.00 0.00 43.56 3.77
328 329 0.454452 GTTTGAAATCCGCGGTGAGC 60.454 55.000 27.15 14.02 43.95 4.26
329 330 0.168128 GGTTTGAAATCCGCGGTGAG 59.832 55.000 27.15 0.00 0.00 3.51
330 331 1.570347 CGGTTTGAAATCCGCGGTGA 61.570 55.000 27.15 7.11 40.28 4.02
331 332 1.154301 CGGTTTGAAATCCGCGGTG 60.154 57.895 27.15 0.00 40.28 4.94
332 333 2.329614 CCGGTTTGAAATCCGCGGT 61.330 57.895 27.15 10.00 44.63 5.68
334 335 2.202427 GCCGGTTTGAAATCCGCG 60.202 61.111 1.90 0.00 44.63 6.46
335 336 2.180769 GGCCGGTTTGAAATCCGC 59.819 61.111 1.90 3.66 44.63 5.54
336 337 1.579084 TTCGGCCGGTTTGAAATCCG 61.579 55.000 27.83 4.73 45.42 4.18
337 338 0.599060 TTTCGGCCGGTTTGAAATCC 59.401 50.000 27.83 0.00 0.00 3.01
338 339 1.538075 TCTTTCGGCCGGTTTGAAATC 59.462 47.619 27.83 0.00 31.78 2.17
339 340 1.611519 TCTTTCGGCCGGTTTGAAAT 58.388 45.000 27.83 0.00 31.78 2.17
341 342 1.065851 GTTTCTTTCGGCCGGTTTGAA 59.934 47.619 27.83 20.30 0.00 2.69
343 344 0.382515 TGTTTCTTTCGGCCGGTTTG 59.617 50.000 27.83 13.37 0.00 2.93
345 346 1.104630 TTTGTTTCTTTCGGCCGGTT 58.895 45.000 27.83 0.00 0.00 4.44
346 347 0.382873 GTTTGTTTCTTTCGGCCGGT 59.617 50.000 27.83 0.00 0.00 5.28
347 348 0.318360 GGTTTGTTTCTTTCGGCCGG 60.318 55.000 27.83 9.82 0.00 6.13
348 349 0.382515 TGGTTTGTTTCTTTCGGCCG 59.617 50.000 22.12 22.12 0.00 6.13
351 352 3.889196 TCGATGGTTTGTTTCTTTCGG 57.111 42.857 0.00 0.00 0.00 4.30
352 353 6.747659 AAAATCGATGGTTTGTTTCTTTCG 57.252 33.333 0.00 0.00 0.00 3.46
358 359 8.147704 ACAGGATTTAAAATCGATGGTTTGTTT 58.852 29.630 0.00 0.00 0.00 2.83
360 361 7.176690 AGACAGGATTTAAAATCGATGGTTTGT 59.823 33.333 0.00 0.00 0.00 2.83
361 362 7.538575 AGACAGGATTTAAAATCGATGGTTTG 58.461 34.615 0.00 0.00 0.00 2.93
362 363 7.703058 AGACAGGATTTAAAATCGATGGTTT 57.297 32.000 0.00 0.00 0.00 3.27
363 364 8.801882 TTAGACAGGATTTAAAATCGATGGTT 57.198 30.769 0.00 0.00 0.00 3.67
364 365 8.801882 TTTAGACAGGATTTAAAATCGATGGT 57.198 30.769 0.00 0.00 0.00 3.55
395 396 6.041409 TCCACACAGCTGGATTTAAAATCAAA 59.959 34.615 19.93 0.00 35.23 2.69
397 398 5.048083 GTCCACACAGCTGGATTTAAAATCA 60.048 40.000 19.93 0.00 42.50 2.57
398 399 5.402398 GTCCACACAGCTGGATTTAAAATC 58.598 41.667 19.93 0.00 42.50 2.17
401 402 3.153919 GGTCCACACAGCTGGATTTAAA 58.846 45.455 19.93 0.00 42.50 1.52
402 403 2.790433 GGTCCACACAGCTGGATTTAA 58.210 47.619 19.93 0.00 42.50 1.52
403 404 1.338674 CGGTCCACACAGCTGGATTTA 60.339 52.381 19.93 0.00 42.50 1.40
404 405 0.606401 CGGTCCACACAGCTGGATTT 60.606 55.000 19.93 0.00 42.50 2.17
405 406 1.003355 CGGTCCACACAGCTGGATT 60.003 57.895 19.93 0.00 42.50 3.01
406 407 2.665000 CGGTCCACACAGCTGGAT 59.335 61.111 19.93 1.80 42.50 3.41
407 408 3.625897 CCGGTCCACACAGCTGGA 61.626 66.667 19.93 3.01 38.05 3.86
409 410 4.320456 AGCCGGTCCACACAGCTG 62.320 66.667 13.48 13.48 33.55 4.24
430 431 2.876550 GCCGCGGAGTTTTATTTAGGAT 59.123 45.455 33.48 0.00 0.00 3.24
473 474 0.666274 TCATCCGTGCGTGTCAGAAC 60.666 55.000 0.00 0.00 0.00 3.01
522 524 3.943671 AATTACCGATTGATGTGGGGA 57.056 42.857 0.00 0.00 0.00 4.81
526 528 6.738200 GCGATGATTAATTACCGATTGATGTG 59.262 38.462 0.00 0.00 0.00 3.21
547 549 9.654663 GTATTACTTCTCCTTATTTATGGCGAT 57.345 33.333 0.00 0.00 0.00 4.58
567 570 9.823098 CTGTACGAGATTGTATACCTGTATTAC 57.177 37.037 0.00 0.00 0.00 1.89
575 578 5.184340 AGTGCTGTACGAGATTGTATACC 57.816 43.478 0.00 0.00 0.00 2.73
592 595 2.007049 GCACAACTGGCGTATAGTGCT 61.007 52.381 12.90 0.00 46.31 4.40
597 600 1.273886 TCTGTGCACAACTGGCGTATA 59.726 47.619 21.98 0.00 0.00 1.47
621 657 3.458163 CTTGGAGCGGGGCGACTA 61.458 66.667 0.00 0.00 0.00 2.59
623 659 4.162690 ATCTTGGAGCGGGGCGAC 62.163 66.667 0.00 0.00 0.00 5.19
630 666 0.867753 CTTCGTCCGATCTTGGAGCG 60.868 60.000 0.00 0.00 41.31 5.03
631 667 0.456221 TCTTCGTCCGATCTTGGAGC 59.544 55.000 0.00 0.00 39.14 4.70
633 669 2.670229 CGTTTCTTCGTCCGATCTTGGA 60.670 50.000 0.00 0.00 35.04 3.53
636 672 1.992170 CCGTTTCTTCGTCCGATCTT 58.008 50.000 0.00 0.00 0.00 2.40
637 673 0.458025 GCCGTTTCTTCGTCCGATCT 60.458 55.000 0.00 0.00 0.00 2.75
638 674 1.740043 CGCCGTTTCTTCGTCCGATC 61.740 60.000 0.00 0.00 0.00 3.69
639 675 1.804326 CGCCGTTTCTTCGTCCGAT 60.804 57.895 0.00 0.00 0.00 4.18
640 676 2.429571 CGCCGTTTCTTCGTCCGA 60.430 61.111 0.00 0.00 0.00 4.55
641 677 2.713894 GACGCCGTTTCTTCGTCCG 61.714 63.158 0.00 0.00 44.62 4.79
778 815 3.537874 GATGGGGACGGACGGGAG 61.538 72.222 0.00 0.00 0.00 4.30
821 858 4.314440 AGGAGCGTTTGCCTGCGA 62.314 61.111 0.00 0.00 44.31 5.10
823 860 3.435186 GGAGGAGCGTTTGCCTGC 61.435 66.667 0.00 0.00 44.31 4.85
824 861 2.747855 GGGAGGAGCGTTTGCCTG 60.748 66.667 0.00 0.00 44.31 4.85
825 862 4.035102 GGGGAGGAGCGTTTGCCT 62.035 66.667 0.00 0.00 44.31 4.75
826 863 3.978571 GAGGGGAGGAGCGTTTGCC 62.979 68.421 0.00 0.00 44.31 4.52
827 864 2.436824 GAGGGGAGGAGCGTTTGC 60.437 66.667 0.00 0.00 43.24 3.68
828 865 2.269241 GGAGGGGAGGAGCGTTTG 59.731 66.667 0.00 0.00 0.00 2.93
829 866 3.391382 CGGAGGGGAGGAGCGTTT 61.391 66.667 0.00 0.00 0.00 3.60
897 934 2.093816 TCTGATGATGACTGAGGTGTGC 60.094 50.000 0.00 0.00 0.00 4.57
918 3415 1.686325 CGGGAATCGGGATCAGGTGT 61.686 60.000 0.00 0.00 34.75 4.16
943 3440 1.394917 CTACGGAGCAATGTTGACTGC 59.605 52.381 0.00 0.00 38.91 4.40
967 3480 1.070758 CCGCCGGAGTACTACCTAGTA 59.929 57.143 5.05 0.00 37.73 1.82
968 3481 0.179034 CCGCCGGAGTACTACCTAGT 60.179 60.000 5.05 0.00 40.24 2.57
970 3483 1.526917 GCCGCCGGAGTACTACCTA 60.527 63.158 7.68 0.00 0.00 3.08
971 3484 2.832201 GCCGCCGGAGTACTACCT 60.832 66.667 7.68 0.00 0.00 3.08
994 3507 2.279517 GAACGCCGCCATCGATCT 60.280 61.111 0.00 0.00 38.10 2.75
1233 3775 1.807165 CACGCACCAGACCAGATCG 60.807 63.158 0.00 0.00 0.00 3.69
1497 4338 4.623167 CAGACATCTCAGGTAAACGAGTTG 59.377 45.833 0.00 0.00 35.83 3.16
1500 4341 4.442375 ACAGACATCTCAGGTAAACGAG 57.558 45.455 0.00 0.00 0.00 4.18
1502 4343 4.623167 CAGAACAGACATCTCAGGTAAACG 59.377 45.833 0.00 0.00 0.00 3.60
1503 4344 5.542779 ACAGAACAGACATCTCAGGTAAAC 58.457 41.667 0.00 0.00 0.00 2.01
1504 4345 5.808366 ACAGAACAGACATCTCAGGTAAA 57.192 39.130 0.00 0.00 0.00 2.01
1512 4353 5.047660 GGACAGACTAACAGAACAGACATCT 60.048 44.000 0.00 0.00 0.00 2.90
1514 4355 4.835615 AGGACAGACTAACAGAACAGACAT 59.164 41.667 0.00 0.00 0.00 3.06
1527 4368 6.013379 AGAATTCAGTTCAGAGGACAGACTA 58.987 40.000 8.44 0.00 39.39 2.59
1532 4373 5.485620 CATCAGAATTCAGTTCAGAGGACA 58.514 41.667 8.44 0.00 36.58 4.02
1536 4377 4.333095 CCAGCATCAGAATTCAGTTCAGAG 59.667 45.833 8.44 0.00 39.39 3.35
1663 5316 4.408821 TGCAGATCCCACCACGGC 62.409 66.667 0.00 0.00 0.00 5.68
1699 5352 1.478510 GCGAAGATGGAGAGGAACTGA 59.521 52.381 0.00 0.00 41.55 3.41
1760 5413 1.305802 TAGTCGGGGTCAGCATGGT 60.306 57.895 0.00 0.00 36.16 3.55
1762 5415 1.144057 GGTAGTCGGGGTCAGCATG 59.856 63.158 0.00 0.00 37.54 4.06
1763 5416 2.064581 GGGTAGTCGGGGTCAGCAT 61.065 63.158 0.00 0.00 0.00 3.79
1773 5435 2.806244 CTGAAACCTGTTTGGGTAGTCG 59.194 50.000 0.00 0.00 38.87 4.18
1774 5436 3.146847 CCTGAAACCTGTTTGGGTAGTC 58.853 50.000 0.00 0.00 38.87 2.59
1775 5437 2.751816 GCCTGAAACCTGTTTGGGTAGT 60.752 50.000 0.00 0.00 38.87 2.73
1776 5438 1.886542 GCCTGAAACCTGTTTGGGTAG 59.113 52.381 0.00 0.00 38.87 3.18
1777 5439 1.816183 CGCCTGAAACCTGTTTGGGTA 60.816 52.381 0.00 0.00 38.87 3.69
1778 5440 1.106944 CGCCTGAAACCTGTTTGGGT 61.107 55.000 0.00 0.00 42.05 4.51
1779 5441 0.821711 TCGCCTGAAACCTGTTTGGG 60.822 55.000 0.00 3.93 41.11 4.12
1780 5442 1.028905 TTCGCCTGAAACCTGTTTGG 58.971 50.000 0.00 0.00 42.93 3.28
1796 5458 2.672714 TCAGAACAATCCGTCAGTTCG 58.327 47.619 0.00 0.00 44.67 3.95
1930 5601 3.425659 GAGGCCCACTTTCTTCTTCATT 58.574 45.455 0.00 0.00 0.00 2.57
1975 5646 2.050350 CGAGTTGTCCGAGCCCCTA 61.050 63.158 0.00 0.00 0.00 3.53
2006 5677 0.532862 ACTGGTCTGTTGGCGTCAAG 60.533 55.000 0.75 0.00 32.92 3.02
2038 5709 0.531974 GGCGCATACCGATCAAAGGA 60.532 55.000 10.83 0.00 40.02 3.36
2057 5729 9.635520 AAATTAATGCAAGAAATTCTCTGACAG 57.364 29.630 0.00 0.00 33.37 3.51
2121 5797 1.740025 GGAAAAGCAGTCCCTCAATCG 59.260 52.381 0.00 0.00 0.00 3.34
2307 5989 1.082690 CTTGCTTCTTCTTCGCCTCC 58.917 55.000 0.00 0.00 0.00 4.30
2341 6023 1.759445 CTCGGTCACCTCATTCTCCAT 59.241 52.381 0.00 0.00 0.00 3.41
2535 6220 4.276926 AGAAACTAGCAGCTCTTGGTTTTG 59.723 41.667 0.00 0.00 38.70 2.44
2705 6393 4.170723 CGGAGCTCGGTTTCAGAC 57.829 61.111 12.89 0.00 34.75 3.51
2867 6555 0.251077 CCTGTTTCAGAGGGCTGCTT 60.251 55.000 0.00 0.00 42.01 3.91
2917 6605 6.094603 GGAAATGTTGTATGCATCTGAAGTCT 59.905 38.462 0.19 0.00 0.00 3.24
3068 6759 0.809385 TTACCGACGCTCTTCCTCTG 59.191 55.000 0.00 0.00 0.00 3.35
3111 6802 0.317436 CTACGATGCCGCTCTCTGAC 60.317 60.000 0.00 0.00 39.95 3.51
3266 6957 1.002502 CGAGGGGGTCCTTGGAAAC 60.003 63.158 0.00 0.00 45.05 2.78
3323 7014 4.682334 TGGTACCTCGGCGTCCCA 62.682 66.667 14.36 4.25 0.00 4.37
3377 7068 0.926155 CACGTCGAGGATGAAGCATG 59.074 55.000 12.85 0.00 0.00 4.06
3647 7341 0.377203 CACCGACATCGACGATCTCA 59.623 55.000 7.54 0.00 43.02 3.27
3659 7353 2.734591 GCACTCTGACCACCGACA 59.265 61.111 0.00 0.00 0.00 4.35
3669 7363 2.320587 GGTGAGTTGCGGCACTCTG 61.321 63.158 23.33 0.00 43.32 3.35
3677 7371 2.260154 TGTGCCATGGTGAGTTGCG 61.260 57.895 14.67 0.00 0.00 4.85
3680 7374 0.106268 TTGGTGTGCCATGGTGAGTT 60.106 50.000 14.67 0.00 45.56 3.01
3767 7461 2.059786 CCGGAAACCCCTACCGCTA 61.060 63.158 0.00 0.00 44.45 4.26
3819 7513 0.817013 CAGTCTGAGCCTCTCCTCAC 59.183 60.000 0.00 0.00 36.96 3.51
3854 7548 3.310860 ATCGTCGCCACCCACCTTC 62.311 63.158 0.00 0.00 0.00 3.46
3956 7650 5.939764 TGAGATAGCCTCATTTGTGTACT 57.060 39.130 0.00 0.00 46.38 2.73
3972 7666 5.957771 AGAATAAACACAGGGCTGAGATA 57.042 39.130 0.00 0.00 0.00 1.98
4071 7773 4.629200 GCAGAACTTCAGATACAAGTCTGG 59.371 45.833 4.28 0.00 44.51 3.86
4078 7780 5.016831 TCTACAGGCAGAACTTCAGATACA 58.983 41.667 0.00 0.00 0.00 2.29
4099 7804 8.691661 ATCACTAAACTAACCACAAATGTTCT 57.308 30.769 0.00 0.00 0.00 3.01
4222 7953 5.133221 ACAGAGTTGTTCAAACTATGCCTT 58.867 37.500 11.61 0.00 41.67 4.35
4232 7963 4.024893 GCGAAATCAGACAGAGTTGTTCAA 60.025 41.667 0.00 0.00 37.76 2.69
4237 7968 4.461405 CTTTGCGAAATCAGACAGAGTTG 58.539 43.478 0.00 0.00 34.14 3.16
4244 7975 4.223320 TCAAACCTTTGCGAAATCAGAC 57.777 40.909 0.00 0.00 38.05 3.51
4246 7977 4.858935 TCTTCAAACCTTTGCGAAATCAG 58.141 39.130 0.00 0.00 38.05 2.90
4247 7978 4.909696 TCTTCAAACCTTTGCGAAATCA 57.090 36.364 0.00 0.00 38.05 2.57
4248 7979 5.281727 AGTTCTTCAAACCTTTGCGAAATC 58.718 37.500 0.00 0.00 38.05 2.17
4249 7980 5.067805 AGAGTTCTTCAAACCTTTGCGAAAT 59.932 36.000 0.00 0.00 38.05 2.17
4463 8252 1.060308 CGGCGCTCAATGTTTACCG 59.940 57.895 7.64 0.00 0.00 4.02
4464 8253 1.226295 GCGGCGCTCAATGTTTACC 60.226 57.895 26.86 0.00 0.00 2.85
4684 8501 3.597728 GGCGTTGGCGGGTTCAAA 61.598 61.111 0.00 0.00 41.24 2.69
4771 8597 1.200760 ACATGTCTGGGCTGCAGGTA 61.201 55.000 17.12 0.00 0.00 3.08
4822 8648 2.778299 TCGGACATTTTCCAACTCTGG 58.222 47.619 0.00 0.00 46.29 3.86
4824 8650 4.286297 TCATCGGACATTTTCCAACTCT 57.714 40.909 0.00 0.00 46.29 3.24
4843 8669 2.203788 AGGCTCCAGGTCCGTTCA 60.204 61.111 0.00 0.00 0.00 3.18
4849 8675 4.459089 GTCGCCAGGCTCCAGGTC 62.459 72.222 10.54 0.00 0.00 3.85
5107 8933 3.003763 GACCCCCGGAAGCTGTCT 61.004 66.667 0.73 0.00 0.00 3.41
5149 8976 4.176752 GGCGCCGGGAAAGAGGAT 62.177 66.667 12.58 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.