Multiple sequence alignment - TraesCS3D01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G124300 chr3D 100.000 6888 0 0 1 6888 81824330 81831217 0.000000e+00 12720.0
1 TraesCS3D01G124300 chr3D 95.918 49 2 0 1604 1652 81825881 81825833 5.730000e-11 80.5
2 TraesCS3D01G124300 chr3D 95.918 49 2 0 1504 1552 81825981 81825933 5.730000e-11 80.5
3 TraesCS3D01G124300 chr3D 93.750 48 3 0 1499 1546 135376530 135376577 9.580000e-09 73.1
4 TraesCS3D01G124300 chr3D 93.333 45 1 2 487 531 598729849 598729891 1.600000e-06 65.8
5 TraesCS3D01G124300 chr3D 100.000 29 0 0 1550 1578 370110041 370110069 3.000000e-03 54.7
6 TraesCS3D01G124300 chr3B 89.068 2415 182 36 3721 6113 128565117 128567471 0.000000e+00 2922.0
7 TraesCS3D01G124300 chr3B 90.976 1640 94 30 1547 3163 128562927 128564535 0.000000e+00 2159.0
8 TraesCS3D01G124300 chr3B 86.320 1462 77 52 1 1412 128561351 128562739 0.000000e+00 1478.0
9 TraesCS3D01G124300 chr3B 89.723 506 32 8 3167 3666 128564600 128565091 4.530000e-176 628.0
10 TraesCS3D01G124300 chr3B 87.603 484 33 13 6405 6888 128568048 128568504 2.830000e-148 536.0
11 TraesCS3D01G124300 chr3B 91.667 168 6 6 1411 1578 128562821 128562980 6.950000e-55 226.0
12 TraesCS3D01G124300 chr3B 93.750 48 3 0 1499 1546 193611696 193611743 9.580000e-09 73.1
13 TraesCS3D01G124300 chr3B 91.667 48 3 1 1611 1658 423810183 423810229 1.600000e-06 65.8
14 TraesCS3D01G124300 chr3B 90.196 51 2 3 487 537 14547048 14547001 5.770000e-06 63.9
15 TraesCS3D01G124300 chr3A 91.836 1825 92 20 4912 6707 97051024 97052820 0.000000e+00 2492.0
16 TraesCS3D01G124300 chr3A 88.719 1179 96 23 3722 4874 97049860 97051027 0.000000e+00 1406.0
17 TraesCS3D01G124300 chr3A 90.665 932 58 13 2750 3672 97048926 97049837 0.000000e+00 1212.0
18 TraesCS3D01G124300 chr3A 87.422 962 50 31 612 1538 97046784 97047709 0.000000e+00 1040.0
19 TraesCS3D01G124300 chr3A 95.833 504 20 1 1655 2158 97047706 97048208 0.000000e+00 813.0
20 TraesCS3D01G124300 chr3A 89.901 505 27 10 1 488 97046242 97046739 4.530000e-176 628.0
21 TraesCS3D01G124300 chr3A 88.202 534 39 10 2282 2795 97048400 97048929 3.530000e-172 616.0
22 TraesCS3D01G124300 chr3A 87.500 160 13 6 6696 6849 97052840 97052998 1.970000e-40 178.0
23 TraesCS3D01G124300 chr3A 95.833 48 2 0 1499 1546 150715886 150715933 2.060000e-10 78.7
24 TraesCS3D01G124300 chr5A 92.100 481 33 2 904 1380 405465708 405466187 0.000000e+00 673.0
25 TraesCS3D01G124300 chr5A 95.556 45 2 0 1608 1652 423051586 423051542 9.580000e-09 73.1
26 TraesCS3D01G124300 chr5A 93.333 45 1 2 487 531 562999159 562999201 1.600000e-06 65.8
27 TraesCS3D01G124300 chr5A 96.774 31 1 0 1550 1580 326662899 326662869 1.200000e-02 52.8
28 TraesCS3D01G124300 chr1A 100.000 43 0 0 1504 1546 568391287 568391245 5.730000e-11 80.5
29 TraesCS3D01G124300 chr1A 97.778 45 1 0 1608 1652 568391243 568391287 2.060000e-10 78.7
30 TraesCS3D01G124300 chr2A 92.157 51 3 1 1496 1546 31969156 31969205 3.450000e-08 71.3
31 TraesCS3D01G124300 chr1B 92.157 51 3 1 1500 1549 150361100 150361150 3.450000e-08 71.3
32 TraesCS3D01G124300 chr7D 91.837 49 3 1 1611 1658 565648074 565648026 4.460000e-07 67.6
33 TraesCS3D01G124300 chr7D 91.489 47 3 1 1607 1653 452702999 452702954 5.770000e-06 63.9
34 TraesCS3D01G124300 chr7A 93.617 47 0 3 487 533 195548892 195548935 4.460000e-07 67.6
35 TraesCS3D01G124300 chr7A 97.059 34 1 0 1608 1641 116786257 116786224 2.680000e-04 58.4
36 TraesCS3D01G124300 chr2D 93.478 46 1 2 487 532 166176352 166176395 4.460000e-07 67.6
37 TraesCS3D01G124300 chr2D 93.333 45 1 2 487 531 398306063 398306105 1.600000e-06 65.8
38 TraesCS3D01G124300 chr2D 100.000 29 0 0 1550 1578 170617950 170617922 3.000000e-03 54.7
39 TraesCS3D01G124300 chr7B 90.385 52 1 4 487 537 646211446 646211494 1.600000e-06 65.8
40 TraesCS3D01G124300 chr7B 93.333 45 1 2 487 531 707898797 707898755 1.600000e-06 65.8
41 TraesCS3D01G124300 chr7B 93.333 45 1 2 487 531 744201303 744201345 1.600000e-06 65.8
42 TraesCS3D01G124300 chr1D 90.698 43 4 0 1610 1652 398872255 398872213 2.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G124300 chr3D 81824330 81831217 6887 False 12720.000000 12720 100.000000 1 6888 1 chr3D.!!$F1 6887
1 TraesCS3D01G124300 chr3B 128561351 128568504 7153 False 1324.833333 2922 89.226167 1 6888 6 chr3B.!!$F3 6887
2 TraesCS3D01G124300 chr3A 97046242 97052998 6756 False 1048.125000 2492 90.009750 1 6849 8 chr3A.!!$F2 6848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 789 0.387565 GGCTCCTCGAATCTCTCACC 59.612 60.000 0.00 0.00 0.00 4.02 F
931 992 0.681564 TCCCTTCTCTGCTCCGTCTC 60.682 60.000 0.00 0.00 0.00 3.36 F
955 1016 1.066152 GGATCTCCGCCTCAAATTTGC 59.934 52.381 13.54 1.01 0.00 3.68 F
1097 1164 1.377202 CCCACCCCACATCGTCAAG 60.377 63.158 0.00 0.00 0.00 3.02 F
2027 2192 1.549203 CCCATGTTAGCAAGCCTTGT 58.451 50.000 6.28 0.00 0.00 3.16 F
3566 3977 1.003580 GCTCCTCAATGTGGTCCAAGA 59.996 52.381 0.00 0.00 0.00 3.02 F
4092 4510 0.179137 CGTCCATCGTGCTGAAGCTA 60.179 55.000 3.61 0.00 42.66 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2606 2883 0.036388 CACCAGCGGTCACCATAACT 60.036 55.000 0.00 0.0 31.02 2.24 R
2701 2985 8.463607 GGATAATAACCTATAGTCTGACAGCTC 58.536 40.741 10.88 0.0 0.00 4.09 R
3046 3389 6.317140 TGCACTCATAAGCTAAGAATGGAAAG 59.683 38.462 0.00 0.0 0.00 2.62 R
3091 3435 6.552445 AAGAACTATAGCACCACTTGATCT 57.448 37.500 0.00 0.0 0.00 2.75 R
3902 4313 0.179034 GCAGGTCCAGGCTCTATTGG 60.179 60.000 0.00 0.0 35.74 3.16 R
5223 5659 2.507484 ACAGCAACTGAAGCATAAGCA 58.493 42.857 0.78 0.0 38.02 3.91 R
6032 6468 0.471617 GTACCTCCAGCATGCCATCT 59.528 55.000 15.66 0.0 31.97 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 54 2.052690 CCCTCCGCTTTCTCCTCGA 61.053 63.158 0.00 0.00 0.00 4.04
50 55 1.395826 CCCTCCGCTTTCTCCTCGAT 61.396 60.000 0.00 0.00 0.00 3.59
370 404 2.812011 CCCACTAGGAGTTTTGTTTCCG 59.188 50.000 0.00 0.00 38.54 4.30
373 407 3.497262 CACTAGGAGTTTTGTTTCCGTCC 59.503 47.826 0.00 0.00 38.54 4.79
403 437 5.476945 ACCTGACCATTAATTTGACCAGAAC 59.523 40.000 0.00 0.00 0.00 3.01
406 440 5.048083 TGACCATTAATTTGACCAGAACTGC 60.048 40.000 0.00 0.00 0.00 4.40
469 503 5.232838 CAGAAATTGGGCTCGCATTTTATTC 59.767 40.000 6.74 0.00 0.00 1.75
497 531 4.963815 CGGCTGCCGTTTCAAAAT 57.036 50.000 31.72 0.00 42.73 1.82
499 533 1.895051 CGGCTGCCGTTTCAAAATAG 58.105 50.000 31.72 0.00 42.73 1.73
501 535 2.097466 CGGCTGCCGTTTCAAAATAGAT 59.903 45.455 31.72 0.00 42.73 1.98
502 536 3.438360 GGCTGCCGTTTCAAAATAGATG 58.562 45.455 1.35 0.00 0.00 2.90
505 539 4.662145 CTGCCGTTTCAAAATAGATGACC 58.338 43.478 0.00 0.00 0.00 4.02
508 542 4.082463 GCCGTTTCAAAATAGATGACCCAA 60.082 41.667 0.00 0.00 0.00 4.12
509 543 5.399013 CCGTTTCAAAATAGATGACCCAAC 58.601 41.667 0.00 0.00 0.00 3.77
510 544 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
511 545 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
512 546 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
513 547 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
524 558 8.871125 AGATGACCCAACTTTATACTATACTGG 58.129 37.037 0.00 0.00 0.00 4.00
525 559 7.983166 TGACCCAACTTTATACTATACTGGT 57.017 36.000 0.00 0.00 0.00 4.00
526 560 9.664777 ATGACCCAACTTTATACTATACTGGTA 57.335 33.333 0.00 0.00 0.00 3.25
546 580 6.550163 TGGTAGTACTACTTTGTCTTCCTCT 58.450 40.000 27.71 0.00 36.36 3.69
560 594 6.913170 TGTCTTCCTCTCAATAAAATTGCAC 58.087 36.000 0.00 0.00 0.00 4.57
578 612 4.688021 TGCACGCCTTTTGTTTTATCTTT 58.312 34.783 0.00 0.00 0.00 2.52
579 613 5.833082 TGCACGCCTTTTGTTTTATCTTTA 58.167 33.333 0.00 0.00 0.00 1.85
580 614 6.273825 TGCACGCCTTTTGTTTTATCTTTAA 58.726 32.000 0.00 0.00 0.00 1.52
622 665 1.034838 TCTCCAAGGAGAGAGAGCGC 61.035 60.000 14.66 0.00 45.26 5.92
627 670 0.530288 AAGGAGAGAGAGCGCTCAAC 59.470 55.000 36.87 28.33 43.81 3.18
704 749 8.567285 AGAGACAGAAAAGAAGAACAGAAAAA 57.433 30.769 0.00 0.00 0.00 1.94
723 768 2.755952 AACAGTGGGAAAAAGAGGCT 57.244 45.000 0.00 0.00 0.00 4.58
744 789 0.387565 GGCTCCTCGAATCTCTCACC 59.612 60.000 0.00 0.00 0.00 4.02
747 792 2.288152 GCTCCTCGAATCTCTCACCATC 60.288 54.545 0.00 0.00 0.00 3.51
749 794 4.393834 CTCCTCGAATCTCTCACCATCTA 58.606 47.826 0.00 0.00 0.00 1.98
778 823 1.676967 CTTCCTTGTCTGCCTGCCC 60.677 63.158 0.00 0.00 0.00 5.36
782 827 3.535629 CTTGTCTGCCTGCCCACGA 62.536 63.158 0.00 0.00 0.00 4.35
789 834 4.335647 CCTGCCCACGACTTGCCT 62.336 66.667 0.00 0.00 0.00 4.75
790 835 2.662596 CTGCCCACGACTTGCCTA 59.337 61.111 0.00 0.00 0.00 3.93
791 836 1.741770 CTGCCCACGACTTGCCTAC 60.742 63.158 0.00 0.00 0.00 3.18
792 837 2.813908 GCCCACGACTTGCCTACG 60.814 66.667 0.00 0.00 0.00 3.51
926 987 2.907236 GCCTCCCTTCTCTGCTCC 59.093 66.667 0.00 0.00 0.00 4.70
931 992 0.681564 TCCCTTCTCTGCTCCGTCTC 60.682 60.000 0.00 0.00 0.00 3.36
955 1016 1.066152 GGATCTCCGCCTCAAATTTGC 59.934 52.381 13.54 1.01 0.00 3.68
1065 1127 1.745489 GCCGGTCATGGTGAAGGTC 60.745 63.158 1.90 0.00 31.58 3.85
1066 1128 1.983224 CCGGTCATGGTGAAGGTCT 59.017 57.895 0.00 0.00 0.00 3.85
1071 1133 3.738281 CGGTCATGGTGAAGGTCTGATAC 60.738 52.174 0.00 0.00 0.00 2.24
1072 1134 3.452627 GGTCATGGTGAAGGTCTGATACT 59.547 47.826 0.00 0.00 0.00 2.12
1073 1135 4.080863 GGTCATGGTGAAGGTCTGATACTT 60.081 45.833 0.00 0.00 0.00 2.24
1089 1156 1.540367 CTTACCTCCCCACCCCACA 60.540 63.158 0.00 0.00 0.00 4.17
1097 1164 1.377202 CCCACCCCACATCGTCAAG 60.377 63.158 0.00 0.00 0.00 3.02
1107 1174 3.368843 CCACATCGTCAAGAATCTCCTGT 60.369 47.826 0.00 0.00 0.00 4.00
1120 1187 8.435982 CAAGAATCTCCTGTCTTTATTATCCCT 58.564 37.037 0.00 0.00 31.66 4.20
1252 1333 6.818233 TGGCGTATTAACCTATCATTGTGTA 58.182 36.000 0.00 0.00 0.00 2.90
1254 1335 7.601130 TGGCGTATTAACCTATCATTGTGTATC 59.399 37.037 0.00 0.00 0.00 2.24
1283 1364 5.070685 GTGTTGTTTGGGAAGATTCTAGGT 58.929 41.667 0.00 0.00 0.00 3.08
1288 1369 7.265599 TGTTTGGGAAGATTCTAGGTGATAA 57.734 36.000 0.00 0.00 0.00 1.75
1293 1374 9.447279 TTGGGAAGATTCTAGGTGATAAGATTA 57.553 33.333 0.00 0.00 0.00 1.75
1335 1416 8.986477 ACAAATGTAAACTAAAATGGATCAGC 57.014 30.769 0.00 0.00 0.00 4.26
1348 1429 6.656632 AATGGATCAGCGAACTCTATCTTA 57.343 37.500 0.00 0.00 0.00 2.10
1509 1674 6.271159 AGGATTGGAGATTGATAAGTACTCCC 59.729 42.308 0.00 0.00 44.29 4.30
1528 1693 4.843728 TCCCTCCGATCCATATTAATTGC 58.156 43.478 0.00 0.00 0.00 3.56
1534 1699 3.684305 CGATCCATATTAATTGCCGCTGA 59.316 43.478 0.00 0.00 0.00 4.26
1535 1700 4.333649 CGATCCATATTAATTGCCGCTGAT 59.666 41.667 0.00 0.00 0.00 2.90
1536 1701 5.163723 CGATCCATATTAATTGCCGCTGATT 60.164 40.000 0.00 0.00 0.00 2.57
1539 1704 7.144722 TCCATATTAATTGCCGCTGATTTAG 57.855 36.000 0.00 0.00 0.00 1.85
1540 1705 6.714810 TCCATATTAATTGCCGCTGATTTAGT 59.285 34.615 0.00 0.00 0.00 2.24
1543 1708 6.935741 ATTAATTGCCGCTGATTTAGTACA 57.064 33.333 0.00 0.00 0.00 2.90
1544 1709 6.745159 TTAATTGCCGCTGATTTAGTACAA 57.255 33.333 0.00 0.00 0.00 2.41
1545 1710 5.637006 AATTGCCGCTGATTTAGTACAAA 57.363 34.783 0.00 0.00 0.00 2.83
1546 1711 4.413495 TTGCCGCTGATTTAGTACAAAC 57.587 40.909 0.00 0.00 0.00 2.93
1547 1712 3.670625 TGCCGCTGATTTAGTACAAACT 58.329 40.909 0.00 0.00 39.91 2.66
1548 1713 3.435327 TGCCGCTGATTTAGTACAAACTG 59.565 43.478 0.00 0.00 36.36 3.16
1549 1714 3.682858 GCCGCTGATTTAGTACAAACTGA 59.317 43.478 0.00 0.00 36.36 3.41
1550 1715 4.332819 GCCGCTGATTTAGTACAAACTGAT 59.667 41.667 0.00 0.00 36.36 2.90
1551 1716 5.163754 GCCGCTGATTTAGTACAAACTGATT 60.164 40.000 0.00 0.00 36.36 2.57
1552 1717 6.036735 GCCGCTGATTTAGTACAAACTGATTA 59.963 38.462 0.00 0.00 36.36 1.75
1553 1718 7.413657 GCCGCTGATTTAGTACAAACTGATTAA 60.414 37.037 0.00 0.00 36.36 1.40
1563 1728 5.046910 ACAAACTGATTAATTGTCGCTGG 57.953 39.130 0.00 0.00 32.02 4.85
1568 1733 6.422776 ACTGATTAATTGTCGCTGGTTTAG 57.577 37.500 0.00 0.00 0.00 1.85
1578 1743 4.877251 TGTCGCTGGTTTAGTACAACTTTT 59.123 37.500 0.00 0.00 0.00 2.27
1579 1744 6.047870 TGTCGCTGGTTTAGTACAACTTTTA 58.952 36.000 0.00 0.00 0.00 1.52
1580 1745 6.707161 TGTCGCTGGTTTAGTACAACTTTTAT 59.293 34.615 0.00 0.00 0.00 1.40
1581 1746 7.227116 TGTCGCTGGTTTAGTACAACTTTTATT 59.773 33.333 0.00 0.00 0.00 1.40
1582 1747 8.071967 GTCGCTGGTTTAGTACAACTTTTATTT 58.928 33.333 0.00 0.00 0.00 1.40
1583 1748 8.284693 TCGCTGGTTTAGTACAACTTTTATTTC 58.715 33.333 0.00 0.00 0.00 2.17
1584 1749 7.536281 CGCTGGTTTAGTACAACTTTTATTTCC 59.464 37.037 0.00 0.00 0.00 3.13
1585 1750 7.811236 GCTGGTTTAGTACAACTTTTATTTCCC 59.189 37.037 0.00 0.00 0.00 3.97
1586 1751 8.999905 TGGTTTAGTACAACTTTTATTTCCCT 57.000 30.769 0.00 0.00 0.00 4.20
1587 1752 8.852135 TGGTTTAGTACAACTTTTATTTCCCTG 58.148 33.333 0.00 0.00 0.00 4.45
1588 1753 8.301720 GGTTTAGTACAACTTTTATTTCCCTGG 58.698 37.037 0.00 0.00 0.00 4.45
1589 1754 8.853126 GTTTAGTACAACTTTTATTTCCCTGGT 58.147 33.333 0.00 0.00 0.00 4.00
1590 1755 8.999905 TTAGTACAACTTTTATTTCCCTGGTT 57.000 30.769 0.00 0.00 0.00 3.67
1592 1757 8.631480 AGTACAACTTTTATTTCCCTGGTTAG 57.369 34.615 0.00 0.00 0.00 2.34
1593 1758 6.911250 ACAACTTTTATTTCCCTGGTTAGG 57.089 37.500 0.00 0.00 44.18 2.69
1594 1759 6.378745 ACAACTTTTATTTCCCTGGTTAGGT 58.621 36.000 0.00 0.00 42.96 3.08
1595 1760 6.842280 ACAACTTTTATTTCCCTGGTTAGGTT 59.158 34.615 0.00 0.00 42.96 3.50
1596 1761 7.346175 ACAACTTTTATTTCCCTGGTTAGGTTT 59.654 33.333 0.00 0.00 42.96 3.27
1597 1762 7.297936 ACTTTTATTTCCCTGGTTAGGTTTG 57.702 36.000 0.00 0.00 42.96 2.93
1598 1763 6.842280 ACTTTTATTTCCCTGGTTAGGTTTGT 59.158 34.615 0.00 0.00 42.96 2.83
1599 1764 8.005976 ACTTTTATTTCCCTGGTTAGGTTTGTA 58.994 33.333 0.00 0.00 42.96 2.41
1600 1765 7.764141 TTTATTTCCCTGGTTAGGTTTGTAC 57.236 36.000 0.00 0.00 42.96 2.90
1601 1766 5.594199 ATTTCCCTGGTTAGGTTTGTACT 57.406 39.130 0.00 0.00 42.96 2.73
1602 1767 6.707273 ATTTCCCTGGTTAGGTTTGTACTA 57.293 37.500 0.00 0.00 42.96 1.82
1603 1768 6.512514 TTTCCCTGGTTAGGTTTGTACTAA 57.487 37.500 0.00 0.00 42.96 2.24
1604 1769 6.512514 TTCCCTGGTTAGGTTTGTACTAAA 57.487 37.500 0.00 0.00 42.96 1.85
1605 1770 6.707273 TCCCTGGTTAGGTTTGTACTAAAT 57.293 37.500 0.00 0.00 42.96 1.40
1606 1771 6.714278 TCCCTGGTTAGGTTTGTACTAAATC 58.286 40.000 0.00 0.00 42.96 2.17
1607 1772 6.272792 TCCCTGGTTAGGTTTGTACTAAATCA 59.727 38.462 0.00 0.00 42.96 2.57
1608 1773 6.373495 CCCTGGTTAGGTTTGTACTAAATCAC 59.627 42.308 0.00 0.00 42.96 3.06
1609 1774 7.166167 CCTGGTTAGGTTTGTACTAAATCACT 58.834 38.462 0.00 0.00 39.39 3.41
1610 1775 7.664318 CCTGGTTAGGTTTGTACTAAATCACTT 59.336 37.037 0.00 0.00 39.39 3.16
1611 1776 8.983702 TGGTTAGGTTTGTACTAAATCACTTT 57.016 30.769 0.00 0.00 32.68 2.66
1612 1777 8.842280 TGGTTAGGTTTGTACTAAATCACTTTG 58.158 33.333 0.00 0.00 32.68 2.77
1613 1778 8.843262 GGTTAGGTTTGTACTAAATCACTTTGT 58.157 33.333 0.00 0.00 32.68 2.83
1625 1790 8.656849 ACTAAATCACTTTGTACTAAATCAGCG 58.343 33.333 0.00 0.00 0.00 5.18
1626 1791 6.422776 AATCACTTTGTACTAAATCAGCGG 57.577 37.500 0.00 0.00 0.00 5.52
1641 1806 6.594788 AATCAGCGGCAATTAATATGGATT 57.405 33.333 1.45 0.00 0.00 3.01
1642 1807 5.375417 TCAGCGGCAATTAATATGGATTG 57.625 39.130 1.45 6.85 36.56 2.67
1676 1841 2.818751 TATGCCCCTGGTTAGGTTTG 57.181 50.000 0.00 0.00 42.96 2.93
1708 1873 3.696548 TGTTTGTGCAAAGTGATACACCA 59.303 39.130 0.00 0.00 34.49 4.17
1717 1882 7.442364 GTGCAAAGTGATACACCACATATCTAT 59.558 37.037 0.00 0.00 39.42 1.98
1758 1923 4.346129 CTGATGTTTTCCTATCAAAGCGC 58.654 43.478 0.00 0.00 33.30 5.92
2027 2192 1.549203 CCCATGTTAGCAAGCCTTGT 58.451 50.000 6.28 0.00 0.00 3.16
2137 2302 3.616956 TTGATCTTAGTGCTGGGAGTG 57.383 47.619 0.00 0.00 0.00 3.51
2141 2306 4.962362 TGATCTTAGTGCTGGGAGTGATAA 59.038 41.667 0.00 0.00 0.00 1.75
2165 2330 6.267817 ACATGAATTGCACTTTATCAATCCG 58.732 36.000 0.00 0.00 32.27 4.18
2261 2426 9.927668 ATTTTGTATTCATGAACCGAGAAAATT 57.072 25.926 11.07 4.92 0.00 1.82
2265 2430 7.812191 TGTATTCATGAACCGAGAAAATTTTGG 59.188 33.333 11.07 6.20 0.00 3.28
2272 2440 3.874543 ACCGAGAAAATTTTGGTTTTGGC 59.125 39.130 8.47 0.00 31.80 4.52
2308 2476 8.567285 AAAATGTGGTCCAGAAAGTTATAGAG 57.433 34.615 0.00 0.00 0.00 2.43
2310 2478 6.681729 TGTGGTCCAGAAAGTTATAGAGTT 57.318 37.500 0.00 0.00 0.00 3.01
2317 2485 9.575783 GTCCAGAAAGTTATAGAGTTGAAGTAG 57.424 37.037 0.00 0.00 0.00 2.57
2339 2507 6.964807 AGCACTTGGATTTCATATGCAATA 57.035 33.333 0.28 0.00 38.39 1.90
2342 2510 7.720957 AGCACTTGGATTTCATATGCAATACTA 59.279 33.333 11.02 3.58 38.39 1.82
2385 2656 8.992835 AAATCATGAGCTAAATTGTTCCTTTC 57.007 30.769 0.09 0.00 0.00 2.62
2433 2704 9.906660 TTAACTGTTTGTTGCTTATTGGATAAG 57.093 29.630 0.00 3.84 41.00 1.73
2434 2705 7.759489 ACTGTTTGTTGCTTATTGGATAAGA 57.241 32.000 10.94 0.00 43.85 2.10
2435 2706 8.353423 ACTGTTTGTTGCTTATTGGATAAGAT 57.647 30.769 10.94 0.00 43.85 2.40
2522 2799 9.442047 CTTATTTCTCTACATTGTCTTCTTGGT 57.558 33.333 0.00 0.00 0.00 3.67
2525 2802 6.282199 TCTCTACATTGTCTTCTTGGTACC 57.718 41.667 4.43 4.43 0.00 3.34
2530 2807 5.248640 ACATTGTCTTCTTGGTACCATGAG 58.751 41.667 24.78 16.86 32.87 2.90
2554 2831 6.049149 GCAGTTAGTGTATCCTTTGCTGATA 58.951 40.000 0.00 0.00 0.00 2.15
2606 2883 7.124901 AGAGAGAATAAGCTAACCAAGTCATCA 59.875 37.037 0.00 0.00 0.00 3.07
2701 2985 4.919754 GCCTCTACTTCTTTTGCATTGTTG 59.080 41.667 0.00 0.00 0.00 3.33
2724 3008 8.630917 GTTGAGCTGTCAGACTATAGGTTATTA 58.369 37.037 3.32 0.00 32.98 0.98
2729 3013 7.628794 GCTGTCAGACTATAGGTTATTATCCCG 60.629 44.444 3.32 0.00 0.00 5.14
2742 3026 9.556772 AGGTTATTATCCCGAATTTATCTCCTA 57.443 33.333 0.00 0.00 0.00 2.94
2814 3155 5.738118 TGTTTTACAACTAGGTTTGTCCG 57.262 39.130 2.23 0.00 40.29 4.79
2853 3194 8.608844 TTACATTGGTTTCTTTTGTGTTTTGT 57.391 26.923 0.00 0.00 0.00 2.83
3163 3568 9.016438 GTGGTCCAAGAAAAATTTATACAGGTA 57.984 33.333 0.00 0.00 0.00 3.08
3214 3619 7.115095 TGCATATTTTACACCGTGCTTAAAAAC 59.885 33.333 9.76 3.86 33.95 2.43
3236 3641 3.617531 CGCAGATTGGTTAGAGAAGGTGT 60.618 47.826 0.00 0.00 0.00 4.16
3246 3651 6.542370 TGGTTAGAGAAGGTGTTGAAAGAAAG 59.458 38.462 0.00 0.00 0.00 2.62
3277 3682 7.664318 CCTATCCCTAAACTTGTTACTGTTGTT 59.336 37.037 0.00 0.00 0.00 2.83
3380 3791 2.280524 GTACGCCTGCACACACCA 60.281 61.111 0.00 0.00 0.00 4.17
3559 3970 5.557891 CTTTCTAAAGCTCCTCAATGTGG 57.442 43.478 0.00 0.00 0.00 4.17
3560 3971 4.640771 TTCTAAAGCTCCTCAATGTGGT 57.359 40.909 0.97 0.00 0.00 4.16
3561 3972 4.207891 TCTAAAGCTCCTCAATGTGGTC 57.792 45.455 0.97 0.00 0.00 4.02
3562 3973 2.206576 AAAGCTCCTCAATGTGGTCC 57.793 50.000 0.97 0.00 0.00 4.46
3563 3974 1.067295 AAGCTCCTCAATGTGGTCCA 58.933 50.000 0.97 0.00 0.00 4.02
3564 3975 1.067295 AGCTCCTCAATGTGGTCCAA 58.933 50.000 0.00 0.00 0.00 3.53
3565 3976 1.004044 AGCTCCTCAATGTGGTCCAAG 59.996 52.381 0.00 0.00 0.00 3.61
3566 3977 1.003580 GCTCCTCAATGTGGTCCAAGA 59.996 52.381 0.00 0.00 0.00 3.02
3567 3978 2.553028 GCTCCTCAATGTGGTCCAAGAA 60.553 50.000 0.00 0.00 0.00 2.52
3568 3979 3.341823 CTCCTCAATGTGGTCCAAGAAG 58.658 50.000 0.00 0.00 0.00 2.85
3584 3995 7.201741 GGTCCAAGAAGCTCTCATATTTAAACC 60.202 40.741 0.00 0.00 0.00 3.27
3608 4019 7.014615 ACCTTTTTCAAAGAAGTGCAGACATAT 59.985 33.333 0.00 0.00 0.00 1.78
3610 4021 8.801715 TTTTTCAAAGAAGTGCAGACATATTC 57.198 30.769 0.00 0.00 0.00 1.75
3611 4022 7.750229 TTTCAAAGAAGTGCAGACATATTCT 57.250 32.000 0.00 0.00 36.68 2.40
3648 4059 5.907197 AAGAATCGCACCTGAATATTACG 57.093 39.130 0.00 0.00 0.00 3.18
3668 4079 8.658499 ATTACGACCTTAAATCATGGTTAGAC 57.342 34.615 0.00 0.00 34.87 2.59
3672 4083 7.664318 ACGACCTTAAATCATGGTTAGACTTTT 59.336 33.333 0.00 0.00 34.87 2.27
3674 4085 8.934023 ACCTTAAATCATGGTTAGACTTTTGA 57.066 30.769 0.00 0.00 30.54 2.69
3675 4086 8.793592 ACCTTAAATCATGGTTAGACTTTTGAC 58.206 33.333 0.00 0.00 30.54 3.18
3676 4087 8.244113 CCTTAAATCATGGTTAGACTTTTGACC 58.756 37.037 0.00 0.00 0.00 4.02
3677 4088 8.934023 TTAAATCATGGTTAGACTTTTGACCT 57.066 30.769 0.00 0.00 33.33 3.85
3678 4089 7.839680 AAATCATGGTTAGACTTTTGACCTT 57.160 32.000 0.00 0.00 33.33 3.50
3679 4090 7.839680 AATCATGGTTAGACTTTTGACCTTT 57.160 32.000 0.00 0.00 33.33 3.11
3680 4091 8.934023 AATCATGGTTAGACTTTTGACCTTTA 57.066 30.769 0.00 0.00 33.33 1.85
3681 4092 7.739498 TCATGGTTAGACTTTTGACCTTTAC 57.261 36.000 0.00 0.00 33.33 2.01
3682 4093 7.284074 TCATGGTTAGACTTTTGACCTTTACA 58.716 34.615 0.00 0.00 33.33 2.41
3684 4095 7.504924 TGGTTAGACTTTTGACCTTTACATG 57.495 36.000 0.00 0.00 33.33 3.21
3685 4096 6.016610 TGGTTAGACTTTTGACCTTTACATGC 60.017 38.462 0.00 0.00 33.33 4.06
3686 4097 4.749245 AGACTTTTGACCTTTACATGCG 57.251 40.909 0.00 0.00 0.00 4.73
3687 4098 3.502211 AGACTTTTGACCTTTACATGCGG 59.498 43.478 0.00 0.00 0.00 5.69
3688 4099 3.219281 ACTTTTGACCTTTACATGCGGT 58.781 40.909 0.00 0.00 0.00 5.68
3689 4100 3.252458 ACTTTTGACCTTTACATGCGGTC 59.748 43.478 13.94 13.94 45.76 4.79
3690 4101 1.816074 TTGACCTTTACATGCGGTCC 58.184 50.000 16.63 4.95 45.13 4.46
3692 4103 1.072489 TGACCTTTACATGCGGTCCAA 59.928 47.619 16.63 2.44 45.13 3.53
3693 4104 1.737793 GACCTTTACATGCGGTCCAAG 59.262 52.381 11.10 0.00 41.00 3.61
3694 4105 1.349688 ACCTTTACATGCGGTCCAAGA 59.650 47.619 0.00 0.00 0.00 3.02
3695 4106 2.224670 ACCTTTACATGCGGTCCAAGAA 60.225 45.455 0.00 0.00 0.00 2.52
3696 4107 2.817258 CCTTTACATGCGGTCCAAGAAA 59.183 45.455 0.00 0.00 0.00 2.52
3697 4108 3.254657 CCTTTACATGCGGTCCAAGAAAA 59.745 43.478 0.00 0.00 0.00 2.29
3698 4109 4.261825 CCTTTACATGCGGTCCAAGAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
3699 4110 5.461032 TTTACATGCGGTCCAAGAAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
3700 4111 5.461032 TTACATGCGGTCCAAGAAAAATT 57.539 34.783 0.00 0.00 0.00 1.82
3701 4112 4.335400 ACATGCGGTCCAAGAAAAATTT 57.665 36.364 0.00 0.00 0.00 1.82
3702 4113 5.461032 ACATGCGGTCCAAGAAAAATTTA 57.539 34.783 0.00 0.00 0.00 1.40
3703 4114 6.036577 ACATGCGGTCCAAGAAAAATTTAT 57.963 33.333 0.00 0.00 0.00 1.40
3704 4115 7.164230 ACATGCGGTCCAAGAAAAATTTATA 57.836 32.000 0.00 0.00 0.00 0.98
3705 4116 7.033185 ACATGCGGTCCAAGAAAAATTTATAC 58.967 34.615 0.00 0.00 0.00 1.47
3706 4117 6.576662 TGCGGTCCAAGAAAAATTTATACA 57.423 33.333 0.00 0.00 0.00 2.29
3707 4118 6.616947 TGCGGTCCAAGAAAAATTTATACAG 58.383 36.000 0.00 0.00 0.00 2.74
3708 4119 6.033966 GCGGTCCAAGAAAAATTTATACAGG 58.966 40.000 0.00 0.00 0.00 4.00
3709 4120 6.349860 GCGGTCCAAGAAAAATTTATACAGGT 60.350 38.462 0.00 0.00 0.00 4.00
3710 4121 7.248437 CGGTCCAAGAAAAATTTATACAGGTC 58.752 38.462 0.00 0.00 0.00 3.85
3711 4122 7.248437 GGTCCAAGAAAAATTTATACAGGTCG 58.752 38.462 0.00 0.00 0.00 4.79
3712 4123 6.745907 GTCCAAGAAAAATTTATACAGGTCGC 59.254 38.462 0.00 0.00 0.00 5.19
3713 4124 6.657541 TCCAAGAAAAATTTATACAGGTCGCT 59.342 34.615 0.00 0.00 0.00 4.93
3714 4125 7.175990 TCCAAGAAAAATTTATACAGGTCGCTT 59.824 33.333 0.00 0.00 0.00 4.68
3715 4126 7.273381 CCAAGAAAAATTTATACAGGTCGCTTG 59.727 37.037 0.00 0.00 0.00 4.01
3716 4127 7.681939 AGAAAAATTTATACAGGTCGCTTGA 57.318 32.000 0.00 0.00 0.00 3.02
3717 4128 8.106247 AGAAAAATTTATACAGGTCGCTTGAA 57.894 30.769 0.00 0.00 0.00 2.69
3718 4129 8.573035 AGAAAAATTTATACAGGTCGCTTGAAA 58.427 29.630 0.00 0.00 0.00 2.69
3719 4130 9.353999 GAAAAATTTATACAGGTCGCTTGAAAT 57.646 29.630 0.00 0.00 0.00 2.17
3726 4137 3.003689 ACAGGTCGCTTGAAATCAAACTG 59.996 43.478 0.00 0.00 35.15 3.16
3730 4141 5.705441 AGGTCGCTTGAAATCAAACTGAATA 59.295 36.000 0.00 0.00 35.15 1.75
3865 4276 7.270047 AGCTAATTAACTGCTAATTACACCGA 58.730 34.615 0.00 0.00 40.15 4.69
3871 4282 5.455056 ACTGCTAATTACACCGATAGAGG 57.545 43.478 0.00 0.00 39.76 3.69
3902 4313 8.494016 AGTAAAGGTAATGCTAATGAACAGAC 57.506 34.615 0.00 0.00 0.00 3.51
3904 4315 5.435686 AGGTAATGCTAATGAACAGACCA 57.564 39.130 0.00 0.00 31.31 4.02
3911 4322 5.118990 TGCTAATGAACAGACCAATAGAGC 58.881 41.667 0.00 0.00 0.00 4.09
3912 4323 4.513318 GCTAATGAACAGACCAATAGAGCC 59.487 45.833 0.00 0.00 0.00 4.70
3930 4341 3.321950 AGCCTGGACCTGCTAAGATAAT 58.678 45.455 7.24 0.00 35.69 1.28
3931 4342 3.718956 AGCCTGGACCTGCTAAGATAATT 59.281 43.478 7.24 0.00 35.69 1.40
3933 4344 4.444876 GCCTGGACCTGCTAAGATAATTGA 60.445 45.833 0.00 0.00 0.00 2.57
3934 4345 5.684704 CCTGGACCTGCTAAGATAATTGAA 58.315 41.667 0.00 0.00 0.00 2.69
3943 4354 8.877779 CCTGCTAAGATAATTGAAATCTATCCG 58.122 37.037 0.00 0.00 33.32 4.18
3948 4359 6.773638 AGATAATTGAAATCTATCCGGTGCT 58.226 36.000 0.00 0.00 31.88 4.40
3957 4368 1.873591 CTATCCGGTGCTATGGTTTGC 59.126 52.381 0.00 0.00 0.00 3.68
4049 4467 4.956075 AGGATTGATGTTTTGGGTCATACC 59.044 41.667 0.00 0.00 37.60 2.73
4056 4474 5.249780 TGTTTTGGGTCATACCACACTAT 57.750 39.130 0.00 0.00 41.02 2.12
4061 4479 3.841255 TGGGTCATACCACACTATCAACA 59.159 43.478 0.00 0.00 41.02 3.33
4063 4481 4.081087 GGGTCATACCACACTATCAACACT 60.081 45.833 0.00 0.00 41.02 3.55
4078 4496 2.203182 ACTTCTGTCCCCCGTCCA 59.797 61.111 0.00 0.00 0.00 4.02
4082 4500 3.075005 CTGTCCCCCGTCCATCGT 61.075 66.667 0.00 0.00 37.94 3.73
4084 4502 4.832608 GTCCCCCGTCCATCGTGC 62.833 72.222 0.00 0.00 37.94 5.34
4091 4509 1.446792 CGTCCATCGTGCTGAAGCT 60.447 57.895 3.61 0.00 42.66 3.74
4092 4510 0.179137 CGTCCATCGTGCTGAAGCTA 60.179 55.000 3.61 0.00 42.66 3.32
4110 4528 2.747467 GCTAGCATCTTGGCCTCATTGA 60.747 50.000 10.63 0.00 0.00 2.57
4111 4529 2.519771 AGCATCTTGGCCTCATTGAA 57.480 45.000 3.32 0.00 0.00 2.69
4129 4547 3.667087 GCCTGTGACATTTGGCGA 58.333 55.556 0.00 0.00 35.79 5.54
4191 4616 2.368980 GCGTGATTGCGTCCTTTATC 57.631 50.000 0.00 0.00 0.00 1.75
4192 4617 1.933853 GCGTGATTGCGTCCTTTATCT 59.066 47.619 0.00 0.00 0.00 1.98
4214 4639 7.707624 TCTGGATGCTAGTGATTTTCATTTT 57.292 32.000 0.00 0.00 0.00 1.82
4215 4640 7.541162 TCTGGATGCTAGTGATTTTCATTTTG 58.459 34.615 0.00 0.00 0.00 2.44
4216 4641 7.177216 TCTGGATGCTAGTGATTTTCATTTTGT 59.823 33.333 0.00 0.00 0.00 2.83
4217 4642 8.347004 TGGATGCTAGTGATTTTCATTTTGTA 57.653 30.769 0.00 0.00 0.00 2.41
4218 4643 8.801299 TGGATGCTAGTGATTTTCATTTTGTAA 58.199 29.630 0.00 0.00 0.00 2.41
4230 4655 8.715191 TTTTCATTTTGTAATATCATGGCCAC 57.285 30.769 8.16 0.00 0.00 5.01
4245 4670 2.811317 CACGAGCCTCGCTTGGTC 60.811 66.667 15.20 0.00 45.12 4.02
4270 4703 1.673665 CAAGCAGGTGTGAGGGAGC 60.674 63.158 0.00 0.00 0.00 4.70
4278 4711 2.930562 GTGAGGGAGCTGGGTGGT 60.931 66.667 0.00 0.00 0.00 4.16
4279 4712 2.930019 TGAGGGAGCTGGGTGGTG 60.930 66.667 0.00 0.00 0.00 4.17
4288 4721 0.181114 GCTGGGTGGTGCATCTATCA 59.819 55.000 0.00 0.00 0.00 2.15
4327 4762 4.589908 ACATCTACCTTTTGATGGTGTCC 58.410 43.478 7.69 0.00 42.96 4.02
4332 4767 6.074648 TCTACCTTTTGATGGTGTCCAAAAT 58.925 36.000 0.00 0.00 40.24 1.82
4359 4794 4.662278 CCCTCCAAATCACTTAAAGGTCA 58.338 43.478 0.00 0.00 0.00 4.02
4388 4823 5.783875 ACTAACAGGTTAGCCTTTAGGAGAA 59.216 40.000 16.89 0.00 44.18 2.87
4400 4835 6.544931 AGCCTTTAGGAGAACGTTTTAAAAGT 59.455 34.615 0.46 0.00 37.39 2.66
4403 4838 8.400186 CCTTTAGGAGAACGTTTTAAAAGTGAA 58.600 33.333 0.46 0.00 37.39 3.18
4420 4855 6.394345 AAGTGAAGGGATTAGAATGAACCT 57.606 37.500 0.00 0.00 0.00 3.50
4497 4932 6.769822 AGCAATCCCAGATTAGTCTTGTTATG 59.230 38.462 0.00 0.00 30.42 1.90
4591 5026 9.880157 AATCAATATTTGGTTCATTTTCTCCTG 57.120 29.630 0.00 0.00 0.00 3.86
4655 5090 7.896811 TGTACTTGACTGACTCAATAGTTGAT 58.103 34.615 0.00 0.00 38.26 2.57
4840 5275 7.201839 GGCGTTCAATTCCCCTATATTTTGTAA 60.202 37.037 0.00 0.00 0.00 2.41
4873 5308 8.882736 TGTATTATAGAGTGCTTGTGTTTCATG 58.117 33.333 0.00 0.00 0.00 3.07
4943 5378 8.650714 GTCTTTTGCAATGGTTTTAGATTCATC 58.349 33.333 0.00 0.00 0.00 2.92
4972 5407 6.094048 GCACAGAAAATGGCTAATCTTCTACA 59.906 38.462 0.00 0.00 0.00 2.74
5044 5479 8.801882 TTATGCTTTGGCTACAGTATAACTTT 57.198 30.769 3.26 0.00 39.59 2.66
5050 5485 8.492673 TTTGGCTACAGTATAACTTTGATCTG 57.507 34.615 0.00 0.00 0.00 2.90
5062 5498 6.771188 AACTTTGATCTGAACTCAGTTACG 57.229 37.500 6.61 0.00 44.12 3.18
5223 5659 8.515414 GTGTACCATGCTCTTTTCTATCTTTTT 58.485 33.333 0.00 0.00 0.00 1.94
5305 5741 4.213482 CCTGTCCTGCACAAGTACTTTAAC 59.787 45.833 5.07 0.00 33.31 2.01
5316 5752 9.252962 GCACAAGTACTTTAACTGTTACTAAGA 57.747 33.333 15.38 1.70 0.00 2.10
5338 5774 5.531287 AGACAATACTTTTGGACCAGTGAAC 59.469 40.000 0.00 0.00 0.00 3.18
5339 5775 5.197451 ACAATACTTTTGGACCAGTGAACA 58.803 37.500 0.00 0.00 0.00 3.18
5346 5782 6.323739 ACTTTTGGACCAGTGAACACATTATT 59.676 34.615 7.68 0.00 0.00 1.40
5500 5936 6.069905 TCCTTAAGGTGCAAGATAACATACCA 60.070 38.462 21.04 0.00 36.34 3.25
5681 6117 2.683768 CCATCTACCTCTGGGCTAAGT 58.316 52.381 0.00 0.00 35.63 2.24
5869 6305 1.612726 GGATTGCAAGAGCTGGTGACT 60.613 52.381 4.94 0.00 42.74 3.41
5997 6433 4.410228 TGGGATTAGTTCATTCAGAGGAGG 59.590 45.833 0.00 0.00 0.00 4.30
6023 6459 6.949352 AAGCACCATATATCCAAGTCTTTG 57.051 37.500 0.00 0.00 0.00 2.77
6024 6460 6.006275 AGCACCATATATCCAAGTCTTTGT 57.994 37.500 0.00 0.00 32.21 2.83
6025 6461 7.136822 AGCACCATATATCCAAGTCTTTGTA 57.863 36.000 0.00 0.00 32.21 2.41
6026 6462 7.749666 AGCACCATATATCCAAGTCTTTGTAT 58.250 34.615 0.00 0.00 32.21 2.29
6027 6463 7.880195 AGCACCATATATCCAAGTCTTTGTATC 59.120 37.037 0.00 0.00 32.21 2.24
6028 6464 7.661437 GCACCATATATCCAAGTCTTTGTATCA 59.339 37.037 0.00 0.00 32.21 2.15
6050 6489 2.101640 TAGATGGCATGCTGGAGGTA 57.898 50.000 18.92 0.00 0.00 3.08
6085 6524 4.082787 CGGCAATTGGTGTACTGAGAATTT 60.083 41.667 7.72 0.00 0.00 1.82
6102 6541 6.997476 TGAGAATTTGGGCAAAATAAAAAGCT 59.003 30.769 0.00 0.00 37.51 3.74
6191 6647 9.444600 AAGTGAAATACGACAATTATAAGGTGT 57.555 29.630 4.65 4.65 0.00 4.16
6202 6658 7.878036 ACAATTATAAGGTGTTTTTACACGCT 58.122 30.769 0.00 0.00 41.26 5.07
6208 6664 2.544277 GGTGTTTTTACACGCTTTCCCC 60.544 50.000 0.00 0.00 41.26 4.81
6212 6668 0.393820 TTTACACGCTTTCCCCGAGT 59.606 50.000 0.00 0.00 34.18 4.18
6213 6669 0.393820 TTACACGCTTTCCCCGAGTT 59.606 50.000 0.00 0.00 32.19 3.01
6217 6673 2.033194 CGCTTTCCCCGAGTTGTCC 61.033 63.158 0.00 0.00 0.00 4.02
6239 6700 2.031120 TGTTTCCTGTTCTTGGCTTGG 58.969 47.619 0.00 0.00 0.00 3.61
6251 6712 2.205022 TGGCTTGGAGTTTCATCAGG 57.795 50.000 0.00 0.00 0.00 3.86
6271 6732 2.031870 GGCCTGGAAACTGAAAACACT 58.968 47.619 0.00 0.00 0.00 3.55
6276 6737 2.159254 TGGAAACTGAAAACACTGCAGC 60.159 45.455 15.27 0.00 33.03 5.25
6303 6764 2.424557 AGCTGACAGAACTGATGCTTG 58.575 47.619 6.65 0.00 33.34 4.01
6308 6769 1.081892 CAGAACTGATGCTTGGACGG 58.918 55.000 0.00 0.00 0.00 4.79
6340 6801 4.097892 ACCAGGTGTTTTCTGAACATGAAC 59.902 41.667 0.00 0.00 34.36 3.18
6371 6832 3.963383 AGTAACTTGGTCGTTTTGCTG 57.037 42.857 0.00 0.00 0.00 4.41
6372 6833 2.032924 AGTAACTTGGTCGTTTTGCTGC 59.967 45.455 0.00 0.00 0.00 5.25
6409 7133 5.718130 TCTGCTACCTGCCTAGTTAGTTTTA 59.282 40.000 0.00 0.00 42.00 1.52
6448 7172 9.444600 TTCTGTTTTACTTTAGTTCTTCACAGT 57.555 29.630 0.00 0.00 31.75 3.55
6462 7186 4.856487 TCTTCACAGTTTTTGCTGTTTTCG 59.144 37.500 0.00 0.00 46.45 3.46
6494 7218 2.118313 AAATCTCCCGTTTAACCCCG 57.882 50.000 0.00 0.00 0.00 5.73
6499 7223 3.071575 CCGTTTAACCCCGGGTCT 58.928 61.111 21.85 8.43 40.54 3.85
6503 7227 2.224042 CCGTTTAACCCCGGGTCTATAC 60.224 54.545 21.85 13.61 40.54 1.47
6526 7250 4.808414 TTTGATCCTACACTGACAGGAG 57.192 45.455 7.51 1.42 44.06 3.69
6587 7311 6.211184 ACCAATGCAAATCCAGATTTACAAGA 59.789 34.615 9.48 0.00 37.53 3.02
6622 7346 6.902341 TGCAATCTCAACTCAACTAATGAAC 58.098 36.000 0.00 0.00 37.67 3.18
6646 7370 1.748493 TGTTGTTGTGCCCTCTGAAAC 59.252 47.619 0.00 0.00 0.00 2.78
6652 7376 2.733956 TGTGCCCTCTGAAACAAAAGT 58.266 42.857 0.00 0.00 0.00 2.66
6669 7393 9.699703 AAACAAAAGTTAATGTTGTTGTACTGT 57.300 25.926 1.58 0.00 42.96 3.55
6671 7395 9.777575 ACAAAAGTTAATGTTGTTGTACTGTAC 57.222 29.630 10.98 10.98 31.52 2.90
6672 7396 9.997482 CAAAAGTTAATGTTGTTGTACTGTACT 57.003 29.630 17.98 0.00 0.00 2.73
6681 7405 9.772973 ATGTTGTTGTACTGTACTATTGAAGAA 57.227 29.630 17.98 6.51 0.00 2.52
6762 7517 1.230635 CCTGAACAGTGGTTGCGGAG 61.231 60.000 0.00 0.00 37.36 4.63
6776 7531 2.820973 GGAGCCAGCTGCCTCTAG 59.179 66.667 22.77 2.85 42.71 2.43
6813 7568 4.379243 CTGAGGCGTCAGGGCGTT 62.379 66.667 25.34 0.00 45.85 4.84
6820 7575 3.365265 GTCAGGGCGTTGCTTGGG 61.365 66.667 0.00 0.00 0.00 4.12
6829 7590 0.886490 CGTTGCTTGGGCTCTTCACT 60.886 55.000 0.00 0.00 39.59 3.41
6830 7591 0.877743 GTTGCTTGGGCTCTTCACTC 59.122 55.000 0.00 0.00 39.59 3.51
6853 7614 4.084171 CCATGCATTTGTAGCGAGTATCAG 60.084 45.833 0.00 0.00 33.17 2.90
6862 7623 3.138205 AGCGAGTATCAGTTTCAGTCG 57.862 47.619 0.00 0.00 38.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 54 1.202903 ACTCTATCTACCCCGCACGAT 60.203 52.381 0.00 0.00 0.00 3.73
50 55 0.182061 ACTCTATCTACCCCGCACGA 59.818 55.000 0.00 0.00 0.00 4.35
370 404 5.722021 ATTAATGGTCAGGTTTTGTGGAC 57.278 39.130 0.00 0.00 0.00 4.02
373 407 6.423604 GGTCAAATTAATGGTCAGGTTTTGTG 59.576 38.462 0.00 0.00 0.00 3.33
403 437 4.481112 GGCATTTCACGCGGGCAG 62.481 66.667 12.47 0.00 0.00 4.85
469 503 2.639286 GCAGCCGTTTGGTGTCAG 59.361 61.111 0.00 0.00 44.44 3.51
498 532 8.871125 CCAGTATAGTATAAAGTTGGGTCATCT 58.129 37.037 0.00 0.00 0.00 2.90
499 533 8.648693 ACCAGTATAGTATAAAGTTGGGTCATC 58.351 37.037 12.35 0.00 0.00 2.92
501 535 7.983166 ACCAGTATAGTATAAAGTTGGGTCA 57.017 36.000 12.35 0.00 0.00 4.02
502 536 9.140874 ACTACCAGTATAGTATAAAGTTGGGTC 57.859 37.037 12.35 0.00 33.50 4.46
515 549 9.972106 AAGACAAAGTAGTACTACCAGTATAGT 57.028 33.333 25.97 15.88 38.89 2.12
517 551 9.401058 GGAAGACAAAGTAGTACTACCAGTATA 57.599 37.037 25.97 0.00 36.75 1.47
518 552 8.114743 AGGAAGACAAAGTAGTACTACCAGTAT 58.885 37.037 25.97 17.11 36.75 2.12
519 553 7.465116 AGGAAGACAAAGTAGTACTACCAGTA 58.535 38.462 25.97 0.00 36.75 2.74
520 554 6.313324 AGGAAGACAAAGTAGTACTACCAGT 58.687 40.000 25.97 21.29 36.75 4.00
521 555 6.660094 AGAGGAAGACAAAGTAGTACTACCAG 59.340 42.308 25.97 18.69 36.75 4.00
522 556 6.550163 AGAGGAAGACAAAGTAGTACTACCA 58.450 40.000 25.97 0.00 36.75 3.25
523 557 6.658391 TGAGAGGAAGACAAAGTAGTACTACC 59.342 42.308 25.97 12.61 36.75 3.18
524 558 7.684937 TGAGAGGAAGACAAAGTAGTACTAC 57.315 40.000 23.03 23.03 36.35 2.73
525 559 8.880991 ATTGAGAGGAAGACAAAGTAGTACTA 57.119 34.615 2.50 0.00 0.00 1.82
526 560 7.784470 ATTGAGAGGAAGACAAAGTAGTACT 57.216 36.000 0.00 0.00 0.00 2.73
539 573 4.795278 GCGTGCAATTTTATTGAGAGGAAG 59.205 41.667 3.70 0.00 0.00 3.46
546 580 5.053145 ACAAAAGGCGTGCAATTTTATTGA 58.947 33.333 3.70 0.00 0.00 2.57
605 639 1.000270 AGCGCTCTCTCTCCTTGGA 60.000 57.895 2.64 0.00 0.00 3.53
611 645 0.525761 AGTGTTGAGCGCTCTCTCTC 59.474 55.000 35.27 23.58 40.03 3.20
620 663 3.118956 AGGAGAAGGATAAGTGTTGAGCG 60.119 47.826 0.00 0.00 0.00 5.03
622 665 4.714308 AGGAGGAGAAGGATAAGTGTTGAG 59.286 45.833 0.00 0.00 0.00 3.02
627 670 3.640967 CTGGAGGAGGAGAAGGATAAGTG 59.359 52.174 0.00 0.00 0.00 3.16
704 749 2.310538 CAGCCTCTTTTTCCCACTGTT 58.689 47.619 0.00 0.00 0.00 3.16
705 750 1.479389 CCAGCCTCTTTTTCCCACTGT 60.479 52.381 0.00 0.00 0.00 3.55
723 768 0.033109 TGAGAGATTCGAGGAGCCCA 60.033 55.000 0.00 0.00 0.00 5.36
744 789 1.001406 GGAAGCCACGGGAGATAGATG 59.999 57.143 0.00 0.00 0.00 2.90
747 792 1.123928 AAGGAAGCCACGGGAGATAG 58.876 55.000 0.00 0.00 0.00 2.08
749 794 1.201429 ACAAGGAAGCCACGGGAGAT 61.201 55.000 0.00 0.00 0.00 2.75
787 832 2.511600 CCGAAGGCAAGGCGTAGG 60.512 66.667 0.00 0.00 46.14 3.18
944 1005 1.643310 TTGGGGAGGCAAATTTGAGG 58.357 50.000 22.31 0.00 0.00 3.86
953 1014 3.023116 CTGGGGATTGGGGAGGCA 61.023 66.667 0.00 0.00 0.00 4.75
955 1016 1.615262 GAACTGGGGATTGGGGAGG 59.385 63.158 0.00 0.00 0.00 4.30
1065 1127 2.047830 GGGTGGGGAGGTAAGTATCAG 58.952 57.143 0.00 0.00 0.00 2.90
1066 1128 1.344701 GGGGTGGGGAGGTAAGTATCA 60.345 57.143 0.00 0.00 0.00 2.15
1071 1133 0.919289 ATGTGGGGTGGGGAGGTAAG 60.919 60.000 0.00 0.00 0.00 2.34
1072 1134 0.917333 GATGTGGGGTGGGGAGGTAA 60.917 60.000 0.00 0.00 0.00 2.85
1073 1135 1.307517 GATGTGGGGTGGGGAGGTA 60.308 63.158 0.00 0.00 0.00 3.08
1089 1156 5.413309 AAAGACAGGAGATTCTTGACGAT 57.587 39.130 0.00 0.00 32.26 3.73
1120 1187 7.339466 GGAGCCTCCAAATAAGACAAGAAATTA 59.661 37.037 5.69 0.00 36.28 1.40
1252 1333 3.593442 TCCCAAACAACACAGGAAGAT 57.407 42.857 0.00 0.00 0.00 2.40
1254 1335 3.715628 CTTCCCAAACAACACAGGAAG 57.284 47.619 2.92 2.92 45.49 3.46
1283 1364 9.109393 CTTTCTTTCCATTCCGTAATCTTATCA 57.891 33.333 0.00 0.00 0.00 2.15
1288 1369 6.472887 TGTCTTTCTTTCCATTCCGTAATCT 58.527 36.000 0.00 0.00 0.00 2.40
1293 1374 5.301805 ACATTTGTCTTTCTTTCCATTCCGT 59.698 36.000 0.00 0.00 0.00 4.69
1348 1429 8.603242 ACTTACACGTTGAAAGATTTACAGAT 57.397 30.769 7.98 0.00 0.00 2.90
1509 1674 3.063997 GCGGCAATTAATATGGATCGGAG 59.936 47.826 0.00 0.00 0.00 4.63
1528 1693 6.422776 AATCAGTTTGTACTAAATCAGCGG 57.577 37.500 0.00 0.00 31.96 5.52
1534 1699 9.769093 GCGACAATTAATCAGTTTGTACTAAAT 57.231 29.630 0.00 0.00 33.92 1.40
1535 1700 8.995220 AGCGACAATTAATCAGTTTGTACTAAA 58.005 29.630 0.00 0.00 33.92 1.85
1536 1701 8.440059 CAGCGACAATTAATCAGTTTGTACTAA 58.560 33.333 0.00 0.00 33.92 2.24
1539 1704 6.021596 CCAGCGACAATTAATCAGTTTGTAC 58.978 40.000 0.00 0.00 33.92 2.90
1540 1705 5.703592 ACCAGCGACAATTAATCAGTTTGTA 59.296 36.000 0.00 0.00 33.92 2.41
1543 1708 5.705609 AACCAGCGACAATTAATCAGTTT 57.294 34.783 0.00 0.00 0.00 2.66
1544 1709 5.705609 AAACCAGCGACAATTAATCAGTT 57.294 34.783 0.00 0.00 0.00 3.16
1545 1710 5.938125 ACTAAACCAGCGACAATTAATCAGT 59.062 36.000 0.00 0.00 0.00 3.41
1546 1711 6.422776 ACTAAACCAGCGACAATTAATCAG 57.577 37.500 0.00 0.00 0.00 2.90
1547 1712 6.874664 TGTACTAAACCAGCGACAATTAATCA 59.125 34.615 0.00 0.00 0.00 2.57
1548 1713 7.298507 TGTACTAAACCAGCGACAATTAATC 57.701 36.000 0.00 0.00 0.00 1.75
1549 1714 7.389607 AGTTGTACTAAACCAGCGACAATTAAT 59.610 33.333 0.00 0.00 36.39 1.40
1550 1715 6.707161 AGTTGTACTAAACCAGCGACAATTAA 59.293 34.615 0.00 0.00 36.39 1.40
1551 1716 6.225318 AGTTGTACTAAACCAGCGACAATTA 58.775 36.000 0.00 0.00 36.39 1.40
1552 1717 5.061179 AGTTGTACTAAACCAGCGACAATT 58.939 37.500 0.00 0.00 36.39 2.32
1553 1718 4.638304 AGTTGTACTAAACCAGCGACAAT 58.362 39.130 0.00 0.00 36.39 2.71
1563 1728 8.853126 ACCAGGGAAATAAAAGTTGTACTAAAC 58.147 33.333 0.00 0.00 0.00 2.01
1568 1733 7.823665 CCTAACCAGGGAAATAAAAGTTGTAC 58.176 38.462 0.00 0.00 38.41 2.90
1585 1750 8.617290 AAGTGATTTAGTACAAACCTAACCAG 57.383 34.615 0.00 0.00 0.00 4.00
1586 1751 8.842280 CAAAGTGATTTAGTACAAACCTAACCA 58.158 33.333 0.00 0.00 0.00 3.67
1587 1752 8.843262 ACAAAGTGATTTAGTACAAACCTAACC 58.157 33.333 0.00 0.00 0.00 2.85
1599 1764 8.656849 CGCTGATTTAGTACAAAGTGATTTAGT 58.343 33.333 0.00 0.00 0.00 2.24
1600 1765 8.116753 CCGCTGATTTAGTACAAAGTGATTTAG 58.883 37.037 0.00 0.00 0.00 1.85
1601 1766 7.413657 GCCGCTGATTTAGTACAAAGTGATTTA 60.414 37.037 0.00 0.00 0.00 1.40
1602 1767 6.622896 GCCGCTGATTTAGTACAAAGTGATTT 60.623 38.462 0.00 0.00 0.00 2.17
1603 1768 5.163754 GCCGCTGATTTAGTACAAAGTGATT 60.164 40.000 0.00 0.00 0.00 2.57
1604 1769 4.332819 GCCGCTGATTTAGTACAAAGTGAT 59.667 41.667 0.00 0.00 0.00 3.06
1605 1770 3.682858 GCCGCTGATTTAGTACAAAGTGA 59.317 43.478 0.00 0.00 0.00 3.41
1606 1771 3.435327 TGCCGCTGATTTAGTACAAAGTG 59.565 43.478 0.00 0.00 0.00 3.16
1607 1772 3.670625 TGCCGCTGATTTAGTACAAAGT 58.329 40.909 0.00 0.00 0.00 2.66
1608 1773 4.678509 TTGCCGCTGATTTAGTACAAAG 57.321 40.909 0.00 0.00 0.00 2.77
1609 1774 5.637006 AATTGCCGCTGATTTAGTACAAA 57.363 34.783 0.00 0.00 0.00 2.83
1610 1775 6.745159 TTAATTGCCGCTGATTTAGTACAA 57.255 33.333 0.00 0.00 0.00 2.41
1611 1776 6.935741 ATTAATTGCCGCTGATTTAGTACA 57.064 33.333 0.00 0.00 0.00 2.90
1612 1777 7.962918 CCATATTAATTGCCGCTGATTTAGTAC 59.037 37.037 0.00 0.00 0.00 2.73
1613 1778 7.880713 TCCATATTAATTGCCGCTGATTTAGTA 59.119 33.333 0.00 0.00 0.00 1.82
1614 1779 6.714810 TCCATATTAATTGCCGCTGATTTAGT 59.285 34.615 0.00 0.00 0.00 2.24
1625 1790 5.332743 TCCCTCCAATCCATATTAATTGCC 58.667 41.667 0.00 0.00 32.65 4.52
1626 1791 6.012745 ACTCCCTCCAATCCATATTAATTGC 58.987 40.000 0.00 0.00 32.65 3.56
1641 1806 4.291249 GGGGCATAAATTATACTCCCTCCA 59.709 45.833 13.27 0.00 32.98 3.86
1642 1807 4.540502 AGGGGCATAAATTATACTCCCTCC 59.459 45.833 11.63 2.08 39.11 4.30
1676 1841 6.091441 TCACTTTGCACAAACACCATTTTAAC 59.909 34.615 0.00 0.00 0.00 2.01
1708 1873 8.718102 ACGCTTCTGTTACAAAATAGATATGT 57.282 30.769 0.00 0.00 33.44 2.29
1717 1882 4.695396 TCAGGTACGCTTCTGTTACAAAA 58.305 39.130 0.00 0.00 33.13 2.44
2006 2171 0.324645 AAGGCTTGCTAACATGGGGG 60.325 55.000 0.00 0.00 0.00 5.40
2014 2179 4.829064 CTTTGTGTACAAGGCTTGCTAA 57.171 40.909 26.45 10.12 37.15 3.09
2027 2192 1.466950 GCATGCTAACGGCTTTGTGTA 59.533 47.619 11.37 0.00 42.39 2.90
2108 2273 5.757320 CCAGCACTAAGATCAAATACCTCTG 59.243 44.000 0.00 0.00 0.00 3.35
2141 2306 6.095300 TCGGATTGATAAAGTGCAATTCATGT 59.905 34.615 0.00 0.00 35.05 3.21
2215 2380 9.005777 ACAAAATAGTTATCGTAAACACATGGT 57.994 29.630 0.00 0.00 0.00 3.55
2248 2413 5.503357 GCCAAAACCAAAATTTTCTCGGTTC 60.503 40.000 19.08 7.88 39.00 3.62
2252 2417 3.799420 TCGCCAAAACCAAAATTTTCTCG 59.201 39.130 0.00 0.00 29.17 4.04
2265 2430 1.314730 TTCAGAGGGTTCGCCAAAAC 58.685 50.000 0.00 0.00 39.65 2.43
2272 2440 2.484264 GACCACATTTTCAGAGGGTTCG 59.516 50.000 0.00 0.00 0.00 3.95
2308 2476 5.689383 TGAAATCCAAGTGCTACTTCAAC 57.311 39.130 0.00 0.00 36.03 3.18
2310 2478 6.038603 GCATATGAAATCCAAGTGCTACTTCA 59.961 38.462 6.97 0.00 36.03 3.02
2317 2485 6.742109 AGTATTGCATATGAAATCCAAGTGC 58.258 36.000 12.46 0.00 38.73 4.40
2339 2507 6.801539 TTTCGAAAGCTGATGAACAATAGT 57.198 33.333 6.47 0.00 0.00 2.12
2342 2510 6.258230 TGATTTCGAAAGCTGATGAACAAT 57.742 33.333 24.88 0.00 0.00 2.71
2348 2619 4.035324 AGCTCATGATTTCGAAAGCTGATG 59.965 41.667 24.88 20.13 38.58 3.07
2475 2752 4.436079 AGGATAGGGTTAACAAGAGTGGT 58.564 43.478 8.10 0.00 0.00 4.16
2477 2754 9.110502 GAAATAAGGATAGGGTTAACAAGAGTG 57.889 37.037 8.10 0.00 0.00 3.51
2488 2765 8.568617 ACAATGTAGAGAAATAAGGATAGGGT 57.431 34.615 0.00 0.00 0.00 4.34
2522 2799 5.208890 AGGATACACTAACTGCTCATGGTA 58.791 41.667 0.00 0.00 41.41 3.25
2525 2802 5.220739 GCAAAGGATACACTAACTGCTCATG 60.221 44.000 0.00 0.00 41.41 3.07
2530 2807 4.253685 TCAGCAAAGGATACACTAACTGC 58.746 43.478 0.00 0.00 41.41 4.40
2554 2831 5.482006 GAAGCTGCAAACAATCCCTAAAAT 58.518 37.500 1.02 0.00 0.00 1.82
2606 2883 0.036388 CACCAGCGGTCACCATAACT 60.036 55.000 0.00 0.00 31.02 2.24
2701 2985 8.463607 GGATAATAACCTATAGTCTGACAGCTC 58.536 40.741 10.88 0.00 0.00 4.09
3046 3389 6.317140 TGCACTCATAAGCTAAGAATGGAAAG 59.683 38.462 0.00 0.00 0.00 2.62
3054 3397 6.878317 AGTACATTGCACTCATAAGCTAAGA 58.122 36.000 0.00 0.00 0.00 2.10
3090 3434 7.661536 AAGAACTATAGCACCACTTGATCTA 57.338 36.000 0.00 0.00 0.00 1.98
3091 3435 6.552445 AAGAACTATAGCACCACTTGATCT 57.448 37.500 0.00 0.00 0.00 2.75
3101 3445 7.492669 TCATAACAGAGCAAAGAACTATAGCAC 59.507 37.037 0.00 0.00 0.00 4.40
3105 3449 9.973450 GAGATCATAACAGAGCAAAGAACTATA 57.027 33.333 0.00 0.00 0.00 1.31
3110 3454 7.840931 TGTAGAGATCATAACAGAGCAAAGAA 58.159 34.615 0.00 0.00 0.00 2.52
3163 3568 8.785946 CATCCCAAACAAATTAAATTTCAAGCT 58.214 29.630 0.00 0.00 0.00 3.74
3214 3619 2.932614 CACCTTCTCTAACCAATCTGCG 59.067 50.000 0.00 0.00 0.00 5.18
3236 3641 6.713731 AGGGATAGGGTTACTTTCTTTCAA 57.286 37.500 0.00 0.00 0.00 2.69
3246 3651 7.767659 CAGTAACAAGTTTAGGGATAGGGTTAC 59.232 40.741 0.00 0.00 38.69 2.50
3292 3697 3.379688 GCTTGGGAATAAAAGCTCCAGAG 59.620 47.826 0.29 0.00 44.33 3.35
3322 3727 2.655407 AGAGGGGAGAGAGTTAACCTGA 59.345 50.000 0.88 0.00 0.00 3.86
3380 3791 2.645838 AACTCCATGTTGAGTGTGCT 57.354 45.000 5.51 0.00 44.68 4.40
3512 3923 6.239945 CACAAACAAACAAATGCAAGTACAC 58.760 36.000 0.00 0.00 0.00 2.90
3513 3924 5.163913 GCACAAACAAACAAATGCAAGTACA 60.164 36.000 0.00 0.00 33.27 2.90
3514 3925 5.063312 AGCACAAACAAACAAATGCAAGTAC 59.937 36.000 0.00 0.00 35.51 2.73
3556 3967 2.777832 ATGAGAGCTTCTTGGACCAC 57.222 50.000 0.00 0.00 0.00 4.16
3557 3968 5.441718 AAATATGAGAGCTTCTTGGACCA 57.558 39.130 0.00 0.00 0.00 4.02
3558 3969 7.201741 GGTTTAAATATGAGAGCTTCTTGGACC 60.202 40.741 0.00 0.00 0.00 4.46
3559 3970 7.554476 AGGTTTAAATATGAGAGCTTCTTGGAC 59.446 37.037 0.00 0.00 0.00 4.02
3560 3971 7.633789 AGGTTTAAATATGAGAGCTTCTTGGA 58.366 34.615 0.00 0.00 0.00 3.53
3561 3972 7.872113 AGGTTTAAATATGAGAGCTTCTTGG 57.128 36.000 0.00 0.00 0.00 3.61
3584 3995 8.807667 AATATGTCTGCACTTCTTTGAAAAAG 57.192 30.769 0.00 0.00 0.00 2.27
3618 4029 5.957842 TCAGGTGCGATTCTTTGTTTTAT 57.042 34.783 0.00 0.00 0.00 1.40
3619 4030 5.759506 TTCAGGTGCGATTCTTTGTTTTA 57.240 34.783 0.00 0.00 0.00 1.52
3627 4038 4.982916 GTCGTAATATTCAGGTGCGATTCT 59.017 41.667 0.00 0.00 0.00 2.40
3630 4041 3.321111 AGGTCGTAATATTCAGGTGCGAT 59.679 43.478 0.00 0.00 0.00 4.58
3633 4044 6.913873 TTTAAGGTCGTAATATTCAGGTGC 57.086 37.500 0.00 0.00 0.00 5.01
3648 4059 9.010029 TCAAAAGTCTAACCATGATTTAAGGTC 57.990 33.333 0.00 0.00 33.74 3.85
3668 4079 3.915437 ACCGCATGTAAAGGTCAAAAG 57.085 42.857 0.00 0.00 31.69 2.27
3674 4085 1.349688 TCTTGGACCGCATGTAAAGGT 59.650 47.619 0.00 0.00 41.63 3.50
3675 4086 2.107950 TCTTGGACCGCATGTAAAGG 57.892 50.000 0.00 0.00 0.00 3.11
3676 4087 4.497473 TTTTCTTGGACCGCATGTAAAG 57.503 40.909 0.00 0.00 0.00 1.85
3677 4088 4.920640 TTTTTCTTGGACCGCATGTAAA 57.079 36.364 0.00 0.00 0.00 2.01
3678 4089 5.461032 AATTTTTCTTGGACCGCATGTAA 57.539 34.783 0.00 0.00 0.00 2.41
3679 4090 5.461032 AAATTTTTCTTGGACCGCATGTA 57.539 34.783 0.00 0.00 0.00 2.29
3680 4091 4.335400 AAATTTTTCTTGGACCGCATGT 57.665 36.364 0.00 0.00 0.00 3.21
3681 4092 7.032580 TGTATAAATTTTTCTTGGACCGCATG 58.967 34.615 0.00 0.00 0.00 4.06
3682 4093 7.164230 TGTATAAATTTTTCTTGGACCGCAT 57.836 32.000 0.00 0.00 0.00 4.73
3684 4095 6.033966 CCTGTATAAATTTTTCTTGGACCGC 58.966 40.000 0.00 0.00 0.00 5.68
3685 4096 7.153217 ACCTGTATAAATTTTTCTTGGACCG 57.847 36.000 0.00 0.00 0.00 4.79
3686 4097 7.248437 CGACCTGTATAAATTTTTCTTGGACC 58.752 38.462 0.00 0.00 0.00 4.46
3687 4098 6.745907 GCGACCTGTATAAATTTTTCTTGGAC 59.254 38.462 0.00 0.00 0.00 4.02
3688 4099 6.657541 AGCGACCTGTATAAATTTTTCTTGGA 59.342 34.615 0.00 0.00 0.00 3.53
3689 4100 6.852664 AGCGACCTGTATAAATTTTTCTTGG 58.147 36.000 0.00 0.00 0.00 3.61
3690 4101 8.020819 TCAAGCGACCTGTATAAATTTTTCTTG 58.979 33.333 0.00 0.00 0.00 3.02
3692 4103 7.681939 TCAAGCGACCTGTATAAATTTTTCT 57.318 32.000 0.00 0.00 0.00 2.52
3693 4104 8.736751 TTTCAAGCGACCTGTATAAATTTTTC 57.263 30.769 0.00 0.00 0.00 2.29
3694 4105 9.353999 GATTTCAAGCGACCTGTATAAATTTTT 57.646 29.630 0.00 0.00 0.00 1.94
3695 4106 8.519526 TGATTTCAAGCGACCTGTATAAATTTT 58.480 29.630 0.00 0.00 0.00 1.82
3696 4107 8.050778 TGATTTCAAGCGACCTGTATAAATTT 57.949 30.769 0.00 0.00 0.00 1.82
3697 4108 7.624360 TGATTTCAAGCGACCTGTATAAATT 57.376 32.000 0.00 0.00 0.00 1.82
3698 4109 7.624360 TTGATTTCAAGCGACCTGTATAAAT 57.376 32.000 0.00 0.00 0.00 1.40
3699 4110 7.174253 AGTTTGATTTCAAGCGACCTGTATAAA 59.826 33.333 2.15 0.00 41.15 1.40
3700 4111 6.653320 AGTTTGATTTCAAGCGACCTGTATAA 59.347 34.615 2.15 0.00 41.15 0.98
3701 4112 6.092122 CAGTTTGATTTCAAGCGACCTGTATA 59.908 38.462 2.15 0.00 41.15 1.47
3702 4113 5.003804 AGTTTGATTTCAAGCGACCTGTAT 58.996 37.500 2.15 0.00 41.15 2.29
3703 4114 4.213270 CAGTTTGATTTCAAGCGACCTGTA 59.787 41.667 2.15 0.00 41.15 2.74
3704 4115 3.003689 CAGTTTGATTTCAAGCGACCTGT 59.996 43.478 2.15 0.00 41.15 4.00
3705 4116 3.250762 TCAGTTTGATTTCAAGCGACCTG 59.749 43.478 2.15 0.00 41.15 4.00
3706 4117 3.476552 TCAGTTTGATTTCAAGCGACCT 58.523 40.909 2.15 0.00 41.15 3.85
3707 4118 3.896648 TCAGTTTGATTTCAAGCGACC 57.103 42.857 2.15 0.00 41.15 4.79
3708 4119 9.000018 GTATTATTCAGTTTGATTTCAAGCGAC 58.000 33.333 2.15 0.00 41.15 5.19
3709 4120 8.726068 TGTATTATTCAGTTTGATTTCAAGCGA 58.274 29.630 2.15 1.17 41.15 4.93
3710 4121 8.894409 TGTATTATTCAGTTTGATTTCAAGCG 57.106 30.769 2.15 0.00 41.15 4.68
3763 4174 8.707938 ATTCCAAAATAGCTTAAAGCATTCAC 57.292 30.769 0.00 0.00 45.56 3.18
3764 4175 9.801873 GTATTCCAAAATAGCTTAAAGCATTCA 57.198 29.630 0.00 0.00 45.56 2.57
3765 4176 9.801873 TGTATTCCAAAATAGCTTAAAGCATTC 57.198 29.630 0.00 0.00 45.56 2.67
3768 4179 8.965819 TGATGTATTCCAAAATAGCTTAAAGCA 58.034 29.630 0.00 0.00 45.56 3.91
3769 4180 9.455847 CTGATGTATTCCAAAATAGCTTAAAGC 57.544 33.333 0.00 0.00 42.84 3.51
3808 4219 9.116067 ACTACTGTTTTAAGACAATGCTAAACA 57.884 29.630 0.03 0.00 35.13 2.83
3809 4220 9.382244 CACTACTGTTTTAAGACAATGCTAAAC 57.618 33.333 0.03 0.00 0.00 2.01
3830 4241 9.760077 TTAGCAGTTAATTAGCTTATCCACTAC 57.240 33.333 0.00 0.00 39.68 2.73
3860 4271 5.450688 CCTTTACTCAGAACCTCTATCGGTG 60.451 48.000 0.00 0.00 37.36 4.94
3862 4273 4.645588 ACCTTTACTCAGAACCTCTATCGG 59.354 45.833 0.00 0.00 0.00 4.18
3863 4274 5.838531 ACCTTTACTCAGAACCTCTATCG 57.161 43.478 0.00 0.00 0.00 2.92
3865 4276 7.345914 AGCATTACCTTTACTCAGAACCTCTAT 59.654 37.037 0.00 0.00 0.00 1.98
3871 4282 8.718102 TCATTAGCATTACCTTTACTCAGAAC 57.282 34.615 0.00 0.00 0.00 3.01
3902 4313 0.179034 GCAGGTCCAGGCTCTATTGG 60.179 60.000 0.00 0.00 35.74 3.16
3904 4315 2.478872 TAGCAGGTCCAGGCTCTATT 57.521 50.000 10.99 0.00 41.41 1.73
3911 4322 5.296151 TCAATTATCTTAGCAGGTCCAGG 57.704 43.478 0.00 0.00 0.00 4.45
3912 4323 7.718753 AGATTTCAATTATCTTAGCAGGTCCAG 59.281 37.037 0.00 0.00 0.00 3.86
3930 4341 4.102524 ACCATAGCACCGGATAGATTTCAA 59.897 41.667 9.46 0.00 0.00 2.69
3931 4342 3.646162 ACCATAGCACCGGATAGATTTCA 59.354 43.478 9.46 0.00 0.00 2.69
3933 4344 4.706842 AACCATAGCACCGGATAGATTT 57.293 40.909 9.46 0.00 0.00 2.17
3934 4345 4.389374 CAAACCATAGCACCGGATAGATT 58.611 43.478 9.46 0.00 0.00 2.40
3941 4352 1.677300 TGGCAAACCATAGCACCGG 60.677 57.895 0.00 0.00 42.67 5.28
3957 4368 7.554118 TGAGCAGGAGAATCTAACTAAATTTGG 59.446 37.037 0.00 0.00 33.73 3.28
3972 4384 3.513912 TCCGAAGTTTATGAGCAGGAGAA 59.486 43.478 0.00 0.00 0.00 2.87
4022 4440 4.089361 GACCCAAAACATCAATCCTCCTT 58.911 43.478 0.00 0.00 0.00 3.36
4025 4443 5.067805 GGTATGACCCAAAACATCAATCCTC 59.932 44.000 0.00 0.00 30.04 3.71
4049 4467 3.997021 GGGACAGAAGTGTTGATAGTGTG 59.003 47.826 0.00 0.00 36.88 3.82
4056 4474 1.052124 ACGGGGGACAGAAGTGTTGA 61.052 55.000 0.00 0.00 36.88 3.18
4061 4479 1.229529 ATGGACGGGGGACAGAAGT 60.230 57.895 0.00 0.00 0.00 3.01
4063 4481 2.355986 CGATGGACGGGGGACAGAA 61.356 63.158 0.00 0.00 38.46 3.02
4084 4502 1.134159 AGGCCAAGATGCTAGCTTCAG 60.134 52.381 26.96 19.58 0.00 3.02
4091 4509 3.548770 CTTCAATGAGGCCAAGATGCTA 58.451 45.455 5.01 0.00 0.00 3.49
4092 4510 2.376109 CTTCAATGAGGCCAAGATGCT 58.624 47.619 5.01 0.00 0.00 3.79
4110 4528 0.537143 TCGCCAAATGTCACAGGCTT 60.537 50.000 5.10 0.00 44.85 4.35
4111 4529 1.073025 TCGCCAAATGTCACAGGCT 59.927 52.632 5.10 0.00 44.85 4.58
4174 4593 3.531538 TCCAGATAAAGGACGCAATCAC 58.468 45.455 0.00 0.00 0.00 3.06
4187 4612 8.985315 AATGAAAATCACTAGCATCCAGATAA 57.015 30.769 0.00 0.00 0.00 1.75
4191 4616 7.318141 ACAAAATGAAAATCACTAGCATCCAG 58.682 34.615 0.00 0.00 0.00 3.86
4192 4617 7.230849 ACAAAATGAAAATCACTAGCATCCA 57.769 32.000 0.00 0.00 0.00 3.41
4214 4639 2.766313 GCTCGTGGCCATGATATTACA 58.234 47.619 27.70 4.03 34.27 2.41
4230 4655 3.417275 ATCGACCAAGCGAGGCTCG 62.417 63.158 31.40 31.40 44.26 5.03
4245 4670 2.534298 CTCACACCTGCTTGTAGATCG 58.466 52.381 0.00 0.00 0.00 3.69
4270 4703 2.945080 ATGATAGATGCACCACCCAG 57.055 50.000 0.00 0.00 0.00 4.45
4306 4739 4.588899 TGGACACCATCAAAAGGTAGATG 58.411 43.478 0.00 0.00 40.94 2.90
4310 4745 6.739331 AATTTTGGACACCATCAAAAGGTA 57.261 33.333 0.00 0.00 43.28 3.08
4327 4762 6.041423 AGTGATTTGGAGGGCTTAATTTTG 57.959 37.500 0.00 0.00 0.00 2.44
4332 4767 5.714806 CCTTTAAGTGATTTGGAGGGCTTAA 59.285 40.000 0.00 0.00 0.00 1.85
4388 4823 8.454570 TTCTAATCCCTTCACTTTTAAAACGT 57.545 30.769 0.00 0.00 0.00 3.99
4400 4835 6.387192 TTCAGGTTCATTCTAATCCCTTCA 57.613 37.500 0.00 0.00 0.00 3.02
4403 4838 5.946486 GGATTCAGGTTCATTCTAATCCCT 58.054 41.667 0.00 0.00 37.48 4.20
4417 4852 2.644299 TCACTCAACATGGGATTCAGGT 59.356 45.455 0.00 0.00 42.77 4.00
4420 4855 6.065976 ACTAATCACTCAACATGGGATTCA 57.934 37.500 0.00 0.00 31.28 2.57
4591 5026 3.062774 GCGATGTAGAGAAAGGACAAAGC 59.937 47.826 0.00 0.00 0.00 3.51
4655 5090 6.424509 GCAAAACCAAGATCAACATTCATGAA 59.575 34.615 11.26 11.26 0.00 2.57
4773 5208 9.802039 TCAAGTATACAAGAATTTACTGGGTTT 57.198 29.630 5.50 0.00 0.00 3.27
4840 5275 8.400947 CACAAGCACTCTATAATACAAATTGCT 58.599 33.333 0.00 0.00 0.00 3.91
4856 5291 2.780065 TGCATGAAACACAAGCACTC 57.220 45.000 0.00 0.00 46.01 3.51
4943 5378 3.921119 TTAGCCATTTTCTGTGCAGTG 57.079 42.857 0.00 0.00 0.00 3.66
4972 5407 9.801873 GCACCACACACAATTTATTTATAGAAT 57.198 29.630 0.00 0.00 0.00 2.40
5022 5457 6.234920 TCAAAGTTATACTGTAGCCAAAGCA 58.765 36.000 0.00 0.00 43.56 3.91
5023 5458 6.737254 TCAAAGTTATACTGTAGCCAAAGC 57.263 37.500 0.00 0.00 40.32 3.51
5044 5479 6.368791 CCAATTTCGTAACTGAGTTCAGATCA 59.631 38.462 15.63 0.00 46.59 2.92
5050 5485 5.008316 ACCAACCAATTTCGTAACTGAGTTC 59.992 40.000 0.00 0.00 0.00 3.01
5062 5498 4.100963 ACCTGGAAAAGACCAACCAATTTC 59.899 41.667 0.00 0.00 39.59 2.17
5223 5659 2.507484 ACAGCAACTGAAGCATAAGCA 58.493 42.857 0.78 0.00 38.02 3.91
5305 5741 8.718734 GGTCCAAAAGTATTGTCTTAGTAACAG 58.281 37.037 0.00 0.00 0.00 3.16
5316 5752 5.067283 GTGTTCACTGGTCCAAAAGTATTGT 59.933 40.000 0.00 0.00 0.00 2.71
5346 5782 6.150474 GCAGAGTGGCTTTGGTTACTTATAAA 59.850 38.462 0.00 0.00 0.00 1.40
5365 5801 6.346477 TCTTACTTACACAGATTGCAGAGT 57.654 37.500 0.00 0.00 0.00 3.24
5368 5804 7.547019 TCATCTTCTTACTTACACAGATTGCAG 59.453 37.037 0.00 0.00 0.00 4.41
5500 5936 2.569059 CCGATGATGGAAGCACAGATT 58.431 47.619 0.00 0.00 30.93 2.40
5681 6117 5.475909 AGTCGTCTGAACAGTTATCTGGTAA 59.524 40.000 5.80 0.00 42.23 2.85
5869 6305 4.287326 TGTTGTTACTGTACCATCCCATCA 59.713 41.667 0.00 0.00 0.00 3.07
5997 6433 7.573968 AAGACTTGGATATATGGTGCTTTTC 57.426 36.000 0.00 0.00 0.00 2.29
6023 6459 5.922053 TCCAGCATGCCATCTATATGATAC 58.078 41.667 15.66 0.00 31.84 2.24
6024 6460 5.071384 CCTCCAGCATGCCATCTATATGATA 59.929 44.000 15.66 0.00 31.84 2.15
6025 6461 4.141459 CCTCCAGCATGCCATCTATATGAT 60.141 45.833 15.66 0.00 31.84 2.45
6026 6462 3.199289 CCTCCAGCATGCCATCTATATGA 59.801 47.826 15.66 0.00 31.84 2.15
6027 6463 3.054582 ACCTCCAGCATGCCATCTATATG 60.055 47.826 15.66 2.94 31.97 1.78
6028 6464 3.187942 ACCTCCAGCATGCCATCTATAT 58.812 45.455 15.66 0.00 31.97 0.86
6030 6466 1.442773 ACCTCCAGCATGCCATCTAT 58.557 50.000 15.66 0.00 31.97 1.98
6031 6467 1.694150 GTACCTCCAGCATGCCATCTA 59.306 52.381 15.66 0.00 31.97 1.98
6032 6468 0.471617 GTACCTCCAGCATGCCATCT 59.528 55.000 15.66 0.00 31.97 2.90
6033 6469 0.536006 GGTACCTCCAGCATGCCATC 60.536 60.000 15.66 0.00 35.97 3.51
6034 6470 1.533711 GGTACCTCCAGCATGCCAT 59.466 57.895 15.66 0.00 35.97 4.40
6035 6471 2.998097 GGTACCTCCAGCATGCCA 59.002 61.111 15.66 0.00 35.97 4.92
6050 6489 0.544120 AATTGCCGTTCCCATTGGGT 60.544 50.000 21.31 0.00 44.74 4.51
6062 6501 2.093306 TCTCAGTACACCAATTGCCG 57.907 50.000 0.00 0.00 0.00 5.69
6085 6524 5.157940 TGCATAGCTTTTTATTTTGCCCA 57.842 34.783 0.00 0.00 0.00 5.36
6102 6541 0.978667 TACCGAACAGGGGCTGCATA 60.979 55.000 0.50 0.00 46.96 3.14
6191 6647 1.874872 CTCGGGGAAAGCGTGTAAAAA 59.125 47.619 0.00 0.00 0.00 1.94
6202 6658 1.070105 CACGGACAACTCGGGGAAA 59.930 57.895 0.00 0.00 0.00 3.13
6208 6664 0.859232 CAGGAAACACGGACAACTCG 59.141 55.000 0.00 0.00 0.00 4.18
6212 6668 2.680841 CAAGAACAGGAAACACGGACAA 59.319 45.455 0.00 0.00 0.00 3.18
6213 6669 2.285083 CAAGAACAGGAAACACGGACA 58.715 47.619 0.00 0.00 0.00 4.02
6217 6673 1.308998 AGCCAAGAACAGGAAACACG 58.691 50.000 0.00 0.00 0.00 4.49
6239 6700 0.620556 TCCAGGCCCTGATGAAACTC 59.379 55.000 13.74 0.00 32.44 3.01
6251 6712 2.031870 AGTGTTTTCAGTTTCCAGGCC 58.968 47.619 0.00 0.00 0.00 5.19
6276 6737 5.691305 GCATCAGTTCTGTCAGCTATAGAAG 59.309 44.000 3.21 0.00 36.15 2.85
6291 6752 1.079503 GTCCGTCCAAGCATCAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
6308 6769 1.385528 AAACACCTGGTCGGTTTGTC 58.614 50.000 12.84 0.00 46.37 3.18
6340 6801 3.757745 CCAAGTTACTAAACATGGGCG 57.242 47.619 0.00 0.00 46.20 6.13
6350 6811 3.249080 GCAGCAAAACGACCAAGTTACTA 59.751 43.478 0.00 0.00 33.41 1.82
6371 6832 1.063166 GCAGAACTTAGGCATGCGC 59.937 57.895 12.44 0.00 37.44 6.09
6372 6833 1.594862 GTAGCAGAACTTAGGCATGCG 59.405 52.381 12.44 0.00 41.69 4.73
6448 7172 7.357951 ACAAATTCTTCGAAAACAGCAAAAA 57.642 28.000 0.00 0.00 0.00 1.94
6450 7174 6.959671 AACAAATTCTTCGAAAACAGCAAA 57.040 29.167 0.00 0.00 0.00 3.68
6462 7186 8.812147 AAACGGGAGATTTTAACAAATTCTTC 57.188 30.769 0.00 0.00 32.35 2.87
6494 7218 7.069578 TCAGTGTAGGATCAAAAGTATAGACCC 59.930 40.741 0.00 0.00 0.00 4.46
6499 7223 7.618117 TCCTGTCAGTGTAGGATCAAAAGTATA 59.382 37.037 12.80 0.00 38.15 1.47
6503 7227 5.152623 TCCTGTCAGTGTAGGATCAAAAG 57.847 43.478 12.80 0.00 38.15 2.27
6605 7329 8.465999 ACAACATTTGTTCATTAGTTGAGTTGA 58.534 29.630 9.73 0.00 42.22 3.18
6622 7346 2.361757 TCAGAGGGCACAACAACATTTG 59.638 45.455 0.00 0.00 0.00 2.32
6646 7370 9.997482 AGTACAGTACAACAACATTAACTTTTG 57.003 29.630 13.37 0.00 0.00 2.44
6737 7492 0.182775 AACCACTGTTCAGGGGACAC 59.817 55.000 25.45 0.00 0.00 3.67
6762 7517 1.071128 CCATCTAGAGGCAGCTGGC 59.929 63.158 31.58 31.58 43.74 4.85
6776 7531 2.027745 AGCGTCATGGGATCATACCATC 60.028 50.000 0.00 0.00 45.33 3.51
6811 7566 0.877743 GAGTGAAGAGCCCAAGCAAC 59.122 55.000 0.00 0.00 43.56 4.17
6813 7568 1.376466 GGAGTGAAGAGCCCAAGCA 59.624 57.895 0.00 0.00 43.56 3.91
6814 7569 0.034670 ATGGAGTGAAGAGCCCAAGC 60.035 55.000 0.00 0.00 40.32 4.01
6815 7570 1.747709 CATGGAGTGAAGAGCCCAAG 58.252 55.000 0.00 0.00 31.77 3.61
6817 7572 1.300963 GCATGGAGTGAAGAGCCCA 59.699 57.895 0.00 0.00 0.00 5.36
6820 7575 2.490903 ACAAATGCATGGAGTGAAGAGC 59.509 45.455 0.00 0.00 0.00 4.09
6829 7590 2.401583 ACTCGCTACAAATGCATGGA 57.598 45.000 0.00 0.00 0.00 3.41
6830 7591 3.809279 TGATACTCGCTACAAATGCATGG 59.191 43.478 0.00 0.00 0.00 3.66
6853 7614 3.181546 CGTACGATGAAACCGACTGAAAC 60.182 47.826 10.44 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.